HHsearch results for GI: 254780398 and protein with PDBid: 1yub_A
>1yub_A Ermam, rRNA methyltransferase; MLS antibiotics; NMR {Streptococcus pneumoniae} SCOP: c.66.1.24
Probab=100.00 E-value=0 Score=444.92 Aligned_cols=239 Identities=21% Similarity=0.320 Sum_probs=210.1
Q ss_pred CCCCCCCCCCCCHHHHHHHHHHCCCCCCCEEEEECCCCCHHHHHHHHCCCCEEEEECCCCCCHHHHHHHHHHHHCCCCCC
Q ss_conf 43365841123989999999971989998799975898823467750235259984255430368878753220012200
Q gi|254780398|r 21 PKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQHPNRLEII 100 (284)
Q Consensus 21 p~k~lGQnFL~d~~i~~~iv~~~~~~~~~~VlEIGpG~G~LT~~Ll~~~~~~v~aiEiD~~~~~~l~~~~~~~~~~~~ii 100 (284)
-+++||||||+|++++++|++.+++.++|.|||||||+|+||..|+++ +++|+|||+|+++++.|++.+...+ +++++
T Consensus 3 ~~~k~GQnFL~d~~i~~~Iv~~~~~~~~d~VlEIGpG~G~LT~~L~~~-~~~v~aiE~D~~l~~~l~~~~~~~~-n~~ii 80 (245)
T 1yub_A 3 KNIKYSQNFLTSEKVLNQIIKQLNLKETDTVYEIGTGKGHLTTKLAKI-SKQVTSIELDSHLFNLSSEKLKLNT-RVTLI 80 (245)
T ss_dssp CCCCSCCCBCCCTTTHHHHHHHCCCCSSEEEEECSCCCSSCSHHHHHH-SSEEEESSSSCSSSSSSSCTTTTCS-EEEEC
T ss_pred CCCCCCCCCCCCHHHHHHHHHHCCCCCCCEEEEECCCHHHHHHHHHHC-CCCCEEECCCHHHHHHHHHHHHCCC-CCHHH
T ss_conf 998878714789899999999458999996899799735999999961-6500403404466898875541134-00022
Q ss_pred HHHHCCCCHHHHCCCCCCEEEEECCCHHHHHHHHHHHHHHHCCCCCCCHHHHEEEHHHHHHHHHCCCHHHHHHHHHHHCC
Q ss_conf 00000143155213322201120232246788999998520100000011020334478875301231233234543201
Q gi|254780398|r 101 QDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGW 180 (284)
Q Consensus 101 ~~Dal~~d~~~~~~~~~~~~vvgNLPYnIss~Il~~ll~~~~~~~~~~~~vlmvQkEvA~Rl~a~pg~k~Yg~LSv~~q~ 180 (284)
++|++++|++. ..+++|||||||||||+|+.+++... .+..+++|+|||||+|+++ .||+|||++|+
T Consensus 81 ~~D~l~~~~~~----~~~~~vv~NLPY~Iss~il~~ll~~~----~~~~~~~m~QkEva~ri~~-----~yg~Lsv~~q~ 147 (245)
T 1yub_A 81 HQDILQFQFPN----KQRYKIVGNIPYHLSTQIIKKVVFES----RASDIYLIVEEGFYKRTLD-----IHRTLGLLLHT 147 (245)
T ss_dssp CSCCTTTTCCC----SSEEEEEEECCSSSCHHHHHHHHHHC----CCEEEEEEEESSHHHHHHC-----GGGSHHHHTTT
T ss_pred HCCHHCCCCCC----CCCEEEEECCCHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHH-----CCCCCHHHHHH
T ss_conf 01100014445----78656871675787648999998721----2788899999999998752-----15460688762
Q ss_pred CCCEEEECCCCCCEECCCCCCCEEEEEECCCCCCCC-CCHHHHHHHHHHHHCCCCHHHHHHHHHCCCHHHHHHCCCCCCC
Q ss_conf 332012000110000105787578873012588553-4767899999999727313899987631817899978777465
Q gi|254780398|r 181 RTKATMMFDISPHVFFPSPKVTSTVIHFIPHLNPIP-CCLESLKKITQEAFGKRRKTLRQSLKRLGGENLLHQAGIETNL 259 (284)
Q Consensus 181 ~~~v~~~~~V~~~~F~P~PkVdS~vi~l~pk~~~~~-~~~~~~~~~~~~~F~~RRK~l~~~L~~~~~~~~l~~~~i~~~~ 259 (284)
+|+++.+++|||++|+|+|||||+||+++|+..+.. ...+.|+.+++.+|++|||++.+... ..+.++.++++
T Consensus 148 ~~~i~~~~~V~~~~F~P~PKVdSavi~i~~k~~~~~~~~~~~~~~~~~~~f~~~rk~l~~~~~---~~~~~~~~~~~--- 221 (245)
T 1yub_A 148 QVSIQQLLKLPAECFHPKPKVNSVLIKLTRHTTDVPDKYWKLYTYFVSKWVNREYRQLFTKNQ---FHQAMKHAKVN--- 221 (245)
T ss_dssp TBCCCEEEEECCTTSBSSCCSCEEEEEECBCSCSSCHHHHHHHHHHHHHHHHTCHHHHCSSSH---HHHHHHHTTCS---
T ss_pred CCEEEEEEEECHHHCCCCCCCEEEEEEEEECCCCCCHHHHHHHHHHHHHHHCCHHHHHHCHHH---HHHHHHHCCCC---
T ss_conf 201226007562315589984389999994799986368999999999998105777503348---99999876899---
Q ss_pred CHHCCCHHHHHHHHHHHHHCC
Q ss_conf 712089999999999986364
Q gi|254780398|r 260 RAENLSIEDFCRITNILTDNQ 280 (284)
Q Consensus 260 R~e~Ls~~~~~~L~~~l~~~~ 280 (284)
|+++|+++||++|++.+....
T Consensus 222 ~~~~ls~~e~~~l~~~~~~~~ 242 (245)
T 1yub_A 222 NLSTITYEQVLSIFNSYLLFN 242 (245)
T ss_dssp CTTSCCSHHHHHHHHHHHHHT
T ss_pred CCCCCCHHHHHHHHHHHHHHC
T ss_conf 966389999999999999853