HHsearch results for GI: 254780398 and protein with PDBid: 2ih2_A
>2ih2_A Modification methylase TAQI; DNA, DNA methyltransferase, target base partner, 5- methylpyrimidin-2(1H)-ONE, base flipping; HET: 5PY 6MA NEA; 1.61A {Thermus aquaticus} SCOP: c.66.1.27 d.287.1.1 PDB: 2ibs_A* 2ibt_A* 2ih4_A* 2ih5_A* 2jg3_A* 2np6_A* 2np7_A* 1aqj_A* 1aqi_A* 2adm_A* 1g38_A*
Probab=99.09 E-value=7.2e-10 Score=80.34 Aligned_cols=102 Identities=19% Similarity=0.192 Sum_probs=79.7
Q ss_pred HHHHCCCCCCCCCCCCCCCCHHHHHHHHHHCCCCCCCEEEEECCCCCHHHHHHHHCC--CCEEEEECCCCCCHHHHHHHH
Q ss_conf 999818984336584112398999999997198999879997589882346775023--525998425543036887875
Q gi|254780398|r 13 ILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLG--ARKVIVIEKDQQFFPILKDIS 90 (284)
Q Consensus 13 ll~~~~~~p~k~lGQnFL~d~~i~~~iv~~~~~~~~~~VlEIGpG~G~LT~~Ll~~~--~~~v~aiEiD~~~~~~l~~~~ 90 (284)
+|....=-.+|++||.| +...+++.|++.+...+++.|+|-+||.|.+-.+++++. ..+++++|+|+..++.++
T Consensus 6 ~~~~~s~~~~k~~G~~y-TP~~i~~~~~~~l~~~~~~~IlDPacGsG~FL~~~~~~~~~~~~i~G~did~~~~~la~--- 81 (421)
T 2ih2_A 6 LLSLPSNSAPRSLGRVE-TPPEVVDFMVSLAEAPRGGRVLEPACAHGPFLRAFREAHGTAYRFVGVEIDPKALDLPP--- 81 (421)
T ss_dssp ---------------CC-CCHHHHHHHHHHCCCCTTCEEEEETCTTCHHHHHHHHHHCSCSEEEEEESCTTTCCCCT---
T ss_pred HHHHHHHHCCCCCCEEC-CCHHHHHHHHHHCCCCCCCEEEECCCCHHHHHHHHHHHCCCCCEEEEEECCHHHHHHHH---
T ss_conf 64211001334298788-91999999999478999699996877646999999986776786999979899999999---
Q ss_pred HHHHCCCCCCHHHHCCCCHHHHCCCCCCEEEEECCCHH
Q ss_conf 32200122000000014315521332220112023224
Q gi|254780398|r 91 SQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYN 128 (284)
Q Consensus 91 ~~~~~~~~ii~~Dal~~d~~~~~~~~~~~~vvgNLPYn 128 (284)
..+++++|++..++.+-++ .||||.||.
T Consensus 82 -----~~~i~~~D~l~~~~~~~fD-----~VigNPPy~ 109 (421)
T 2ih2_A 82 -----WAEGILADFLLWEPGEAFD-----LILGNPPYG 109 (421)
T ss_dssp -----TEEEEESCGGGCCCSSCEE-----EEEECCCCC
T ss_pred -----HHHHHHCCCCCCCCCCCCC-----EEEECCCCC
T ss_conf -----7427737733368545777-----787257655