Query         gi|254780398|ref|YP_003064811.1| dimethyladenosine transferase [Candidatus Liberibacter asiaticus str. psy62]
Match_columns 284
No_of_seqs    140 out of 3131
Neff          6.6 
Searched_HMMs 23785
Date          Mon May 30 10:39:50 2011
Command       /home/congqian_1/programs/hhpred/hhsearch -i 254780398.hhm -d /home/congqian_1/database/pdb/pdb70.hhm 

 No Hit                             Prob E-value P-value  Score    SS Cols Query HMM  Template HMM
  1 3gru_A Dimethyladenosine trans 100.0       0       0  535.1  19.5  253   16-279    19-288 (295)
  2 3fut_A Dimethyladenosine trans 100.0       0       0  522.6  23.0  259    6-278     6-269 (271)
  3 1zq9_A Probable dimethyladenos 100.0       0       0  519.2  19.9  248   21-279     2-280 (285)
  4 1qyr_A KSGA, high level kasuga 100.0       0       0  516.1  20.7  248   27-279     1-251 (252)
  5 2h1r_A Dimethyladenosine trans 100.0       0       0  510.3  20.4  253   16-279    11-292 (299)
  6 3ftd_A Dimethyladenosine trans 100.0       0       0  511.9  18.5  246   18-279     2-247 (249)
  7 1qam_A ERMC' methyltransferase 100.0       0       0  474.8  20.6  238   20-278     3-241 (244)
  8 1i4w_A Mitochondrial replicati 100.0       0       0  442.9  17.2  269    1-278    11-332 (353)
  9 1yub_A Ermam, rRNA methyltrans 100.0       0       0  444.9  13.5  239   21-280     3-242 (245)
 10 1wy7_A Hypothetical protein PH  99.5   2E-14 8.3E-19  108.7   8.9  118    6-131     4-126 (207)
 11 1ne2_A Hypothetical protein TA  99.2 2.8E-10 1.2E-14   82.8  13.4  108   10-129    10-122 (200)
 12 1dus_A MJ0882; hypothetical pr  99.2 1.7E-10 7.3E-15   84.2   9.6  108   24-139    31-141 (194)
 13 2ih2_A Modification methylase   99.1 7.2E-10   3E-14   80.3  10.2  102   13-128     6-109 (421)
 14 3lpm_A Putative methyltransfer  99.1 2.9E-10 1.2E-14   82.8   7.1  102   26-132    30-134 (259)
 15 2ozv_A Hypothetical protein AT  99.0 4.2E-10 1.8E-14   81.8   6.6  102   27-131    19-129 (260)
 16 2yvl_A TRMI protein, hypotheti  99.0 2.3E-09 9.5E-14   77.2   8.4   93   30-127    74-168 (248)
 17 1jg1_A PIMT;, protein-L-isoasp  99.0 2.1E-09 8.9E-14   77.4   8.0   82   26-108    71-153 (235)
 18 2qm3_A Predicted methyltransfe  98.9 5.6E-09 2.4E-13   74.8   9.5  113   17-132   140-256 (373)
 19 2f8l_A Hypothetical protein LM  98.9 1.6E-08 6.8E-13   71.9  11.7  178   18-212    98-306 (344)
 20 1vbf_A 231AA long hypothetical  98.9 4.5E-09 1.9E-13   75.4   8.5   77   29-107    52-128 (231)
 21 1xxl_A YCGJ protein; structura  98.9   3E-09 1.3E-13   76.5   7.2   77   33-110     7-84  (239)
 22 1l3i_A Precorrin-6Y methyltran  98.9 1.1E-08 4.5E-13   73.0   9.2  103   31-138    17-121 (192)
 23 1yb2_A Hypothetical protein TA  98.9 2.8E-09 1.2E-13   76.6   6.1   87   36-127    99-189 (275)
 24 1wzn_A SAM-dependent methyltra  98.9 5.1E-09 2.1E-13   75.0   7.2   77   34-111    28-104 (252)
 25 1dl5_A Protein-L-isoaspartate   98.8   1E-08 4.2E-13   73.2   7.9   82   29-110    57-141 (317)
 26 2b3t_A Protein methyltransfera  98.8 1.1E-08 4.7E-13   72.9   7.3  104   23-132    76-191 (276)
 27 1i9g_A Hypothetical protein RV  98.8 1.9E-08 7.9E-13   71.5   8.4  169   30-215    82-264 (280)
 28 3evz_A Methyltransferase; NYSG  98.8 9.5E-09   4E-13   73.3   6.6   98   28-130    36-136 (230)
 29 3mti_A RRNA methylase; SAM-dep  98.8 1.7E-08 7.3E-13   71.7   7.9   91   35-130    11-102 (185)
 30 3kkz_A Uncharacterized protein  98.8 1.1E-08 4.7E-13   72.9   6.8   80   32-111    30-112 (267)
 31 2esr_A Methyltransferase; stru  98.8 7.5E-09 3.1E-13   74.0   5.9   94   35-131    18-114 (177)
 32 2yxd_A Probable cobalt-precorr  98.8 1.4E-08 6.1E-13   72.2   7.3   77   30-107    18-95  (183)
 33 2fyt_A Protein arginine N-meth  98.8 9.9E-09 4.2E-13   73.2   6.4   89   22-110    33-128 (340)
 34 3e05_A Precorrin-6Y C5,15-meth  98.8 6.8E-08 2.9E-12   68.0  10.6  128   30-163    23-152 (204)
 35 2yxe_A Protein-L-isoaspartate   98.8 1.9E-08   8E-13   71.5   7.7   82   25-107    56-140 (215)
 36 3fpf_A Mtnas, putative unchara  98.8 1.6E-08 6.9E-13   71.9   7.2  101   33-139   108-210 (298)
 37 3b3f_A Histone-arginine methyl  98.8 1.2E-08 4.9E-13   72.8   6.2   94   13-112    11-112 (341)
 38 2pwy_A TRNA (adenine-N(1)-)-me  98.8 2.4E-08   1E-12   70.8   7.8   93   31-127    80-176 (258)
 39 1vl5_A Unknown conserved prote  98.8 1.5E-08 6.3E-13   72.1   6.6   91   36-130    26-117 (260)
 40 3gnl_A Uncharacterized protein  98.8 1.6E-07 6.7E-12   65.7  11.9   97   37-138    13-112 (244)
 41 3mb5_A SAM-dependent methyltra  98.7 3.7E-08 1.6E-12   69.7   8.1   94   30-128    76-173 (255)
 42 1o54_A SAM-dependent O-methylt  98.7 4.5E-08 1.9E-12   69.2   8.4   93   30-127    95-191 (277)
 43 3gdh_A Trimethylguanosine synt  98.7   1E-08 4.4E-13   73.1   5.0   93   31-129    61-156 (241)
 44 2p8j_A S-adenosylmethionine-de  98.7 1.9E-08 7.8E-13   71.5   6.2   85   27-111     3-87  (209)
 45 3ccf_A Cyclopropane-fatty-acyl  98.7 1.6E-08 6.6E-13   72.0   5.7   70   37-111    47-116 (279)
 46 2frn_A Hypothetical protein PH  98.7   1E-08 4.3E-13   73.2   4.7   85   37-128   117-203 (278)
 47 3ege_A Putative methyltransfer  98.7 1.1E-08 4.7E-13   72.9   4.9   87   31-127    18-104 (261)
 48 2fhp_A Methylase, putative; al  98.7 6.3E-08 2.7E-12   68.3   8.7  109   32-141    28-142 (187)
 49 2pbf_A Protein-L-isoaspartate   98.7 5.3E-08 2.2E-12   68.7   8.3   85   25-110    57-155 (227)
 50 3dlc_A Putative S-adenosyl-L-m  98.7 1.8E-08 7.4E-13   71.7   5.7   90   33-127    30-121 (219)
 51 2nxc_A L11 mtase, ribosomal pr  98.7 6.1E-08 2.6E-12   68.3   8.4   88   45-138   118-205 (254)
 52 3f4k_A Putative methyltransfer  98.7 3.4E-08 1.4E-12   69.9   7.1   86   23-111    24-112 (257)
 53 3dtn_A Putative methyltransfer  98.7   3E-08 1.2E-12   70.3   6.6   75   36-111    32-108 (234)
 54 2yqz_A Hypothetical protein TT  98.7 3.8E-08 1.6E-12   69.6   6.9   89   35-128    26-115 (263)
 55 1nw3_A Histone methyltransfera  98.7 5.5E-08 2.3E-12   68.6   7.6   94   31-125   139-243 (416)
 56 2okc_A Type I restriction enzy  98.7 2.6E-07 1.1E-11   64.4  11.1  183   13-212   138-358 (445)
 57 3lec_A NADB-rossmann superfami  98.7 1.1E-07 4.4E-12   66.9   8.9   98   36-138    12-112 (230)
 58 1r18_A Protein-L-isoaspartate(  98.7 8.3E-08 3.5E-12   67.5   8.2   83   25-108    61-158 (227)
 59 2o57_A Putative sarcosine dime  98.7 4.4E-08 1.8E-12   69.2   6.7   79   33-111    68-148 (297)
 60 3bkx_A SAM-dependent methyltra  98.7 9.8E-08 4.1E-12   67.1   8.4   93   37-129    33-135 (275)
 61 3lbf_A Protein-L-isoaspartate   98.7   1E-07 4.4E-12   66.9   8.5   80   25-106    56-136 (210)
 62 3d2l_A SAM-dependent methyltra  98.7 5.7E-08 2.4E-12   68.5   7.1   74   34-111    22-95  (243)
 63 3b3j_A Histone-arginine methyl  98.6 4.9E-08 2.1E-12   68.9   6.7   83   29-112   136-224 (480)
 64 1xtp_A LMAJ004091AAA; SGPP, st  98.6 9.7E-08 4.1E-12   67.1   8.0  104   32-139    78-181 (254)
 65 3kr9_A SAM-dependent methyltra  98.6 1.1E-07 4.7E-12   66.7   8.2   97   36-137     6-105 (225)
 66 3hm2_A Precorrin-6Y C5,15-meth  98.6 6.6E-08 2.8E-12   68.1   7.0   78   31-108     9-88  (178)
 67 2b25_A Hypothetical protein; s  98.6 7.7E-08 3.2E-12   67.7   7.3   77   31-107    89-179 (336)
 68 3eey_A Putative rRNA methylase  98.6   6E-08 2.5E-12   68.4   6.7   81   45-128    20-104 (197)
 69 3g5l_A Putative S-adenosylmeth  98.6 2.6E-08 1.1E-12   70.6   4.8  104    1-110     1-105 (253)
 70 1nkv_A Hypothetical protein YJ  98.6 7.3E-08 3.1E-12   67.8   7.1   77   32-108    21-99  (256)
 71 1y8c_A S-adenosylmethionine-de  98.6 9.3E-08 3.9E-12   67.2   7.4   77   34-111    22-100 (246)
 72 1ve3_A Hypothetical protein PH  98.6 6.9E-08 2.9E-12   68.0   6.4   65   45-110    36-100 (227)
 73 1g6q_1 HnRNP arginine N-methyl  98.6 8.2E-08 3.4E-12   67.6   6.5   94   30-128    17-116 (328)
 74 2ar0_A M.ecoki, type I restric  98.6 1.2E-06 5.2E-11   60.2  12.2  188   13-211   136-362 (541)
 75 3hnr_A Probable methyltransfer  98.6 5.7E-08 2.4E-12   68.5   5.3   72   37-112    35-106 (220)
 76 3grz_A L11 mtase, ribosomal pr  98.6   1E-07 4.4E-12   66.9   6.6   83   45-133    58-141 (205)
 77 3a27_A TYW2, uncharacterized p  98.6 5.5E-08 2.3E-12   68.6   5.1  108   23-138    87-206 (272)
 78 2pjd_A Ribosomal RNA small sub  98.6 3.9E-08 1.6E-12   69.5   4.2  102   31-139   181-287 (343)
 79 2pxx_A Uncharacterized protein  98.6 4.4E-08 1.8E-12   69.2   4.4   79   31-111    27-105 (215)
 80 1zx0_A Guanidinoacetate N-meth  98.6   9E-08 3.8E-12   67.3   6.0   73   35-108    49-121 (236)
 81 1i1n_A Protein-L-isoaspartate   98.5 2.1E-07   9E-12   65.0   7.6   83   26-109    55-147 (226)
 82 3bus_A REBM, methyltransferase  98.5 1.9E-07 7.8E-12   65.3   7.2   78   33-110    47-126 (273)
 83 3dh0_A SAM dependent methyltra  98.5 1.1E-07 4.6E-12   66.8   5.8   74   37-110    27-103 (219)
 84 1nv8_A HEMK protein; class I a  98.5 1.6E-07 6.8E-12   65.7   6.6  105   24-131    90-206 (284)
 85 3dmg_A Probable ribosomal RNA   98.5 2.1E-07 8.8E-12   65.0   7.0   90   36-130   220-311 (381)
 86 2p35_A Trans-aconitate 2-methy  98.5 1.3E-07 5.3E-12   66.4   5.9   85   35-128    21-106 (259)
 87 3mgg_A Methyltransferase; NYSG  98.5 1.6E-07 6.7E-12   65.8   5.6   80   27-110    21-102 (276)
 88 3bkw_A MLL3908 protein, S-aden  98.5 2.8E-07 1.2E-11   64.2   6.8   93   13-110    12-104 (243)
 89 2ex4_A Adrenal gland protein A  98.5   4E-07 1.7E-11   63.2   7.2   88   43-133    75-163 (241)
 90 1fbn_A MJ fibrillarin homologu  98.5 4.8E-07   2E-11   62.8   7.5   99   35-136    59-162 (230)
 91 1or8_A Protein arginine N-meth  98.5 1.7E-07   7E-12   65.6   5.0   92   18-110    22-121 (340)
 92 3gu3_A Methyltransferase; alph  98.4 4.4E-07 1.8E-11   63.0   7.2   80   32-111     6-88  (284)
 93 3g5t_A Trans-aconitate 3-methy  98.4 4.8E-07   2E-11   62.7   7.2   97   33-130    23-126 (299)
 94 2ipx_A RRNA 2'-O-methyltransfe  98.4 5.3E-07 2.2E-11   62.5   7.4   98   39-138    69-168 (233)
 95 2fk8_A Methoxy mycolic acid sy  98.4 4.2E-07 1.7E-11   63.2   6.4   75   33-107    76-152 (318)
 96 3lkd_A Type I restriction-modi  98.4 1.4E-05 5.7E-10   53.8  14.1  190   12-212   183-409 (542)
 97 1nt2_A Fibrillarin-like PRE-rR  98.4   1E-06 4.4E-11   60.7   8.3  103   35-139    43-148 (210)
 98 3ofk_A Nodulation protein S; N  98.4 9.3E-07 3.9E-11   61.0   7.8   87   39-131    43-129 (216)
 99 3g2m_A PCZA361.24; SAM-depende  98.4 4.7E-07   2E-11   62.9   6.3   77   34-112    70-150 (299)
100 3bxo_A N,N-dimethyltransferase  98.4   3E-07 1.3E-11   64.0   5.2   77   29-111    23-99  (239)
101 2as0_A Hypothetical protein PH  98.4 4.5E-07 1.9E-11   63.0   6.0  101   29-131   200-303 (396)
102 1ws6_A Methyltransferase; stru  98.4 5.6E-07 2.4E-11   62.4   6.3   94   44-140    38-134 (171)
103 3iv6_A Putative Zn-dependent a  98.4 5.3E-07 2.2E-11   62.5   6.1   85   41-130    39-123 (261)
104 2p7i_A Hypothetical protein; p  98.3 4.4E-07 1.8E-11   63.0   4.5   63   45-111    40-102 (250)
105 2fpo_A Methylase YHHF; structu  98.3 1.1E-06 4.5E-11   60.6   6.4  120   35-161    41-165 (202)
106 3hem_A Cyclopropane-fatty-acyl  98.3 1.5E-06 6.2E-11   59.7   6.9   74   34-107    59-134 (302)
107 3l8d_A Methyltransferase; stru  98.3 5.3E-07 2.2E-11   62.5   4.6   72   35-111    43-114 (242)
108 3lcc_A Putative methyl chlorid  98.3 1.8E-06 7.6E-11   59.2   7.3   76   35-112    55-132 (235)
109 3m70_A Tellurite resistance pr  98.3 1.5E-06 6.5E-11   59.6   6.9   72   39-111   112-183 (286)
110 1u2z_A Histone-lysine N-methyl  98.3 1.5E-06 6.2E-11   59.7   6.7   62   31-92    226-288 (433)
111 2h00_A Methyltransferase 10 do  98.3 1.8E-06 7.4E-11   59.3   7.1  117   15-133    25-156 (254)
112 3c0k_A UPF0064 protein YCCW; P  98.3 1.6E-06 6.6E-11   59.6   6.8  105   26-132   199-308 (396)
113 2kw5_A SLR1183 protein; struct  98.3 6.3E-07 2.6E-11   62.1   4.6   65   46-111    28-92  (202)
114 3khk_A Type I restriction-modi  98.3 1.6E-05 6.8E-10   53.3  11.6  186   13-212   212-447 (544)
115 1g8a_A Fibrillarin-like PRE-rR  98.3 3.3E-06 1.4E-10   57.6   8.1   68   40-108    66-135 (227)
116 1im8_A YECO; methyltransferase  98.3   2E-06 8.3E-11   59.0   6.8   67   45-111    56-127 (244)
117 1kpg_A CFA synthase;, cyclopro  98.2 1.8E-06 7.6E-11   59.2   6.3   75   33-107    50-126 (287)
118 2gpy_A O-methyltransferase; st  98.2 1.4E-06 5.9E-11   59.9   5.8   97   30-128    37-139 (233)
119 3jwg_A HEN1, methyltransferase  98.2 4.5E-06 1.9E-10   56.7   8.2   98   33-133    15-119 (219)
120 3ou2_A SAM-dependent methyltra  98.2 3.2E-06 1.3E-10   57.7   7.4   66   41-110    40-105 (218)
121 2avn_A Ubiquinone/menaquinone   98.2 2.6E-06 1.1E-10   58.3   6.8   60   45-110    52-111 (260)
122 1pjz_A Thiopurine S-methyltran  98.2 1.7E-06 7.2E-11   59.3   5.8   77   31-109     7-96  (203)
123 3ckk_A TRNA (guanine-N(7)-)-me  98.2 2.4E-06 9.9E-11   58.5   6.4   80   47-127    46-133 (235)
124 2i6g_A Putative methyltransfer  98.2 4.8E-06   2E-10   56.5   7.9   71   39-110    23-94  (199)
125 3e8s_A Putative SAM dependent   98.2   8E-07 3.4E-11   61.4   3.9   69   37-106    42-110 (227)
126 3ocj_A Putative exported prote  98.2 1.2E-06   5E-11   60.3   4.8   79   45-128   116-198 (305)
127 3id6_C Fibrillarin-like rRNA/T  98.2 3.3E-06 1.4E-10   57.5   6.8   93   41-135    70-164 (232)
128 1yzh_A TRNA (guanine-N(7)-)-me  98.2 2.9E-06 1.2E-10   57.9   6.4   79   47-127    41-121 (214)
129 2yx1_A Hypothetical protein MJ  98.2 2.2E-06 9.4E-11   58.6   5.5   90   37-138   187-278 (336)
130 1ri5_A MRNA capping enzyme; me  98.2 2.7E-06 1.1E-10   58.2   5.8   66   44-109    61-128 (298)
131 2vdv_E TRNA (guanine-N(7)-)-me  98.2 3.7E-06 1.5E-10   57.3   6.4   80   45-126    47-137 (246)
132 3ggd_A SAM-dependent methyltra  98.2 1.1E-06 4.5E-11   60.6   3.7   64   45-111    54-117 (245)
133 1wxx_A TT1595, hypothetical pr  98.2 1.5E-06 6.2E-11   59.7   4.4  101   26-131   189-293 (382)
134 1xva_A Glycine N-methyltransfe  98.1 2.4E-06   1E-10   58.4   5.2   73   35-108    44-121 (292)
135 3jwh_A HEN1; methyltransferase  98.1 4.7E-06   2E-10   56.6   6.4   79   33-111    15-100 (217)
136 3c3p_A Methyltransferase; NP_9  98.1 2.1E-06 8.9E-11   58.8   4.5   79   30-108    39-121 (210)
137 3m33_A Uncharacterized protein  98.1 9.6E-06   4E-10   54.7   7.8   94    3-106     4-102 (226)
138 3lcv_B Sisomicin-gentamicin re  98.1 1.6E-06 6.7E-11   59.5   3.7   65   45-109   130-195 (281)
139 1x19_A CRTF-related protein; m  98.1 2.1E-05 8.9E-10   52.6   9.4   92   34-131   177-271 (359)
140 1uwv_A 23S rRNA (uracil-5-)-me  98.1   9E-06 3.8E-10   54.9   7.4  160   30-211   269-432 (433)
141 3dr5_A Putative O-methyltransf  98.1 4.3E-06 1.8E-10   56.8   5.6   73   35-107    44-121 (221)
142 3h2b_A SAM-dependent methyltra  98.1   2E-06 8.2E-11   59.0   3.8   78   24-110    19-99  (203)
143 2fca_A TRNA (guanine-N(7)-)-me  98.1 7.4E-06 3.1E-10   55.4   6.6   61   47-107    38-100 (213)
144 1p91_A Ribosomal RNA large sub  98.0 1.1E-05 4.6E-10   54.3   6.7   90   33-130    72-162 (269)
145 3gjy_A Spermidine synthase; AP  98.0 9.1E-06 3.8E-10   54.8   6.2   98   46-146    88-194 (317)
146 3cgg_A SAM-dependent methyltra  98.0 5.2E-06 2.2E-10   56.3   4.8   66   39-110    39-104 (195)
147 3bgv_A MRNA CAP guanine-N7 met  98.0 2.7E-05 1.1E-09   51.9   8.0   97   35-131    20-130 (313)
148 3p2e_A 16S rRNA methylase; met  98.0 1.4E-05 5.7E-10   53.7   6.5   74   37-111    15-94  (225)
149 2ift_A Putative methylase HI07  98.0 1.6E-05 6.6E-10   53.4   6.6  107   47-157    53-164 (201)
150 3fzg_A 16S rRNA methylase; met  98.0 9.5E-06   4E-10   54.7   5.4   71   33-105    37-108 (200)
151 3cc8_A Putative methyltransfer  98.0 6.6E-06 2.8E-10   55.7   4.5   68   37-110    23-90  (230)
152 3frh_A 16S rRNA methylase; met  97.9 1.2E-05   5E-10   54.1   5.6   67   42-110   100-166 (253)
153 3e23_A Uncharacterized protein  97.9 2.2E-05 9.2E-10   52.5   6.8   72   33-112    31-102 (211)
154 3mcz_A O-methyltransferase; ad  97.9  0.0001 4.3E-09   48.3   9.4   93   36-131   168-263 (352)
155 2b78_A Hypothetical protein SM  97.8 7.5E-05 3.2E-09   49.1   8.0  103   26-131   190-299 (385)
156 2r3s_A Uncharacterized protein  97.8 0.00011 4.5E-09   48.2   8.6   93   35-132   151-248 (335)
157 2qfm_A Spermine synthase; sper  97.8 3.2E-05 1.3E-09   51.5   5.7   62   46-107   187-257 (364)
158 2avd_A Catechol-O-methyltransf  97.8 3.8E-05 1.6E-09   51.0   6.0   79   29-107    51-133 (229)
159 1sui_A Caffeoyl-COA O-methyltr  97.8 3.7E-05 1.5E-09   51.1   5.9   85   24-108    55-144 (247)
160 3dxy_A TRNA (guanine-N(7)-)-me  97.8 4.1E-05 1.7E-09   50.7   6.1  106    8-126     7-114 (218)
161 2gs9_A Hypothetical protein TT  97.8 2.2E-05 9.1E-10   52.5   4.5   59   45-110    34-92  (211)
162 3hvi_A Catechol O-methyltransf  97.8 2.2E-05 9.2E-10   52.5   4.4   77   31-107    42-122 (221)
163 2i62_A Nicotinamide N-methyltr  97.7 1.9E-05 8.1E-10   52.8   3.9   58   43-100    52-109 (265)
164 3ll7_A Putative methyltransfer  97.7 3.6E-05 1.5E-09   51.1   5.3   81   45-128    91-174 (410)
165 3bt7_A TRNA (uracil-5-)-methyl  97.7 5.2E-05 2.2E-09   50.1   5.9  156   31-211   198-369 (369)
166 2gb4_A Thiopurine S-methyltran  97.7 7.9E-05 3.3E-09   49.0   6.6   79   31-110    52-148 (252)
167 3opn_A Putative hemolysin; str  97.7 0.00015 6.4E-09   47.2   7.7  186   37-232    26-223 (232)
168 3dp7_A SAM-dependent methyltra  97.7 0.00013 5.4E-09   47.7   7.1   93   37-132   169-264 (363)
169 3duw_A OMT, O-methyltransferas  97.6 5.3E-05 2.2E-09   50.1   5.0   77   31-107    42-122 (223)
170 2igt_A SAM dependent methyltra  97.6 0.00013 5.5E-09   47.6   7.0   99   28-128   132-236 (332)
171 3g07_A 7SK snRNA methylphospha  97.6 3.9E-05 1.6E-09   50.9   4.2   48   45-92     44-92  (292)
172 2hnk_A SAM-dependent O-methylt  97.6 5.6E-05 2.3E-09   49.9   5.0   83   25-107    37-124 (239)
173 3c3y_A Pfomt, O-methyltransfer  97.6 7.7E-05 3.3E-09   49.1   5.7   85   24-108    46-135 (237)
174 2qe6_A Uncharacterized protein  97.6 0.00015 6.3E-09   47.3   7.1   98   27-125    35-165 (274)
175 2ip2_A Probable phenazine-spec  97.6 0.00034 1.4E-08   45.1   8.9   90   36-132   157-249 (334)
176 3adn_A Spermidine synthase; am  97.6 0.00015 6.4E-09   47.2   7.0   78   31-108    64-151 (294)
177 3i9f_A Putative type 11 methyl  97.6 2.8E-05 1.2E-09   51.8   3.2   46   45-91     15-60  (170)
178 1qzz_A RDMB, aclacinomycin-10-  97.6 0.00025 1.1E-08   45.9   7.8   98   36-139   171-275 (374)
179 3cbg_A O-methyltransferase; cy  97.6 8.9E-05 3.8E-09   48.7   5.4   79   29-107    54-136 (232)
180 1mjf_A Spermidine synthase; sp  97.6   6E-05 2.5E-09   49.8   4.4   63   45-107    73-146 (281)
181 1vlm_A SAM-dependent methyltra  97.5 5.4E-05 2.3E-09   50.0   3.9   54   46-110    46-99  (219)
182 2aot_A HMT, histamine N-methyl  97.5 0.00017   7E-09   47.0   6.3   47   47-93     52-105 (292)
183 2a14_A Indolethylamine N-methy  97.5 0.00013 5.3E-09   47.7   5.4   50   44-93     52-101 (263)
184 1inl_A Spermidine synthase; be  97.4  0.0002 8.2E-09   46.6   5.6   78   31-108    71-157 (296)
185 1tw3_A COMT, carminomycin 4-O-  97.4 0.00083 3.5E-08   42.6   8.7   90   37-132   173-265 (360)
186 2r6z_A UPF0341 protein in RSP   97.4 0.00012 5.2E-09   47.8   4.3   92   37-130    73-174 (258)
187 2pt6_A Spermidine synthase; tr  97.4 0.00024   1E-08   46.0   5.8   78   31-108    97-183 (321)
188 3gwz_A MMCR; methyltransferase  97.4   0.001 4.4E-08   42.0   8.9   91   36-132   191-284 (369)
189 3dli_A Methyltransferase; PSI-  97.4  0.0001 4.4E-09   48.3   3.7   55   35-90     28-83  (240)
190 1uir_A Polyamine aminopropyltr  97.4 0.00027 1.2E-08   45.6   5.7   78   30-107    57-144 (314)
191 1xj5_A Spermidine synthase 1;   97.4  0.0004 1.7E-08   44.6   6.5   77   31-107   101-186 (334)
192 2vdw_A Vaccinia virus capping   97.3 0.00032 1.3E-08   45.2   5.8   88   35-123    34-134 (302)
193 3bzb_A Uncharacterized protein  97.3  0.0003 1.2E-08   45.4   5.4   60   33-92     65-125 (281)
194 3hp7_A Hemolysin, putative; st  97.3   0.002 8.6E-08   40.2   9.7  176   46-232    84-271 (291)
195 2i7c_A Spermidine synthase; tr  97.3 0.00035 1.5E-08   44.9   5.7   76   32-107    60-144 (283)
196 3bwc_A Spermidine synthase; SA  97.3 0.00066 2.8E-08   43.3   6.7   77   31-107    76-161 (304)
197 1iy9_A Spermidine synthase; ro  97.3 0.00041 1.7E-08   44.5   5.7  117   32-156    57-189 (275)
198 2g72_A Phenylethanolamine N-me  97.3 0.00095   4E-08   42.3   7.5   51   44-94     68-118 (289)
199 2o07_A Spermidine synthase; st  97.2 0.00061 2.6E-08   43.5   5.8   77   31-107    76-161 (304)
200 2b2c_A Spermidine synthase; be  97.1 0.00045 1.9E-08   44.3   4.7   77   32-108    90-175 (314)
201 3ldu_A Putative methylase; str  97.1  0.0013 5.5E-08   41.4   6.9   94   31-129   179-313 (385)
202 1m6y_A S-adenosyl-methyltransf  97.1 0.00062 2.6E-08   43.4   4.8   78   31-108    10-88  (301)
203 3i53_A O-methyltransferase; CO  97.0 0.00081 3.4E-08   42.7   5.3   61   45-106   167-230 (332)
204 2cmg_A Spermidine synthase; tr  96.9 0.00058 2.5E-08   43.6   3.9   92   32-128    54-152 (262)
205 3k0b_A Predicted N6-adenine-sp  96.9  0.0032 1.3E-07   39.0   7.4   94   31-129   185-319 (393)
206 2jjq_A Uncharacterized RNA met  96.8  0.0032 1.3E-07   39.1   6.7  101   31-139   273-376 (425)
207 2b9e_A NOL1/NOP2/SUN domain fa  96.8  0.0033 1.4E-07   38.9   6.5   92   39-131    94-188 (309)
208 2oyr_A UPF0341 protein YHIQ; a  96.6  0.0014 5.7E-08   41.3   3.8   70   38-108    77-158 (258)
209 1zkd_A DUF185; X-RAY, NESG, RP  96.5  0.0075 3.2E-07   36.7   6.7   71   23-93     43-134 (387)
210 3lst_A CALO1 methyltransferase  96.5  0.0062 2.6E-07   37.2   6.2   83   40-130   177-261 (348)
211 3ndi_A Methyltransferase; S-ad  96.3    0.01 4.2E-07   35.9   6.4   56   33-89     93-148 (416)
212 1jsx_A Glucose-inhibited divis  96.1   0.011 4.5E-07   35.8   5.7   78   31-109    50-129 (207)
213 3g89_A Ribosomal RNA small sub  96.0  0.0055 2.3E-07   37.6   4.0   66   45-110    78-145 (249)
214 3giw_A Protein of unknown func  95.9   0.018 7.8E-07   34.3   6.2  114   27-140    36-189 (277)
215 1ixk_A Methyltransferase; open  95.6   0.046   2E-06   31.8   7.5   83   26-109    98-183 (315)
216 2zfu_A Nucleomethylin, cerebra  95.5   0.014 5.8E-07   35.1   4.5   65   23-111    48-113 (215)
217 1wg8_A Predicted S-adenosylmet  95.3   0.017 7.1E-07   34.5   4.3   76   29-108     4-79  (285)
218 3ajd_A Putative methyltransfer  95.3   0.035 1.5E-06   32.5   5.8  103   26-129    63-168 (274)
219 3htx_A HEN1; HEN1, small RNA m  95.2   0.027 1.2E-06   33.2   5.2   89   21-109   692-792 (950)
220 1g55_A DNA cytosine methyltran  95.2   0.033 1.4E-06   32.7   5.5   74   49-127     3-78  (343)
221 2yxl_A PH0851 protein, 450AA l  95.0   0.065 2.7E-06   30.9   6.7   78   30-108   243-323 (450)
222 3cvo_A Methyltransferase-like   95.0    0.04 1.7E-06   32.2   5.4   60   30-93     15-74  (202)
223 2frx_A Hypothetical protein YE  95.0   0.078 3.3E-06   30.4   6.9   82   26-108    95-181 (479)
224 1sqg_A SUN protein, FMU protei  94.8   0.078 3.3E-06   30.4   6.5   79   26-105   226-306 (429)
225 2qrv_A DNA (cytosine-5)-methyl  94.7   0.085 3.6E-06   30.2   6.5   78   47-128    15-94  (295)
226 1dct_A Protein (modification m  94.6   0.053 2.2E-06   31.4   5.4   59   50-113     2-60  (324)
227 2c7p_A Modification methylase   94.4     0.1 4.3E-06   29.7   6.4   73   47-128    10-82  (327)
228 2wa2_A Non-structural protein   94.4   0.056 2.3E-06   31.3   5.0   44   37-80     72-116 (276)
229 3m6w_A RRNA methylase; rRNA me  94.2   0.066 2.8E-06   30.9   5.1   81   26-107    81-163 (464)
230 3me5_A Cytosine-specific methy  93.9   0.064 2.7E-06   30.9   4.5   62   49-111    89-150 (482)
231 3m4x_A NOL1/NOP2/SUN family pr  93.7   0.094   4E-06   29.9   5.1   79   29-108    88-169 (456)
232 2bm8_A Cephalosporin hydroxyla  93.7   0.096   4E-06   29.8   5.1   81   25-109    59-144 (236)
233 2dul_A N(2),N(2)-dimethylguano  93.6    0.11 4.7E-06   29.4   5.3   89   46-138    46-151 (378)
234 3dou_A Ribosomal RNA large sub  93.5   0.099 4.2E-06   29.7   5.0   54   45-109    23-76  (191)
235 1kyz_A COMT, caffeic acid 3-O-  93.4    0.18 7.5E-06   28.2   6.1   96   37-140   189-286 (365)
236 3gcz_A Polyprotein; flavivirus  93.1    0.13 5.6E-06   28.9   5.1   43   37-79     80-123 (282)
237 1fp1_D Isoliquiritigenin 2'-O-  92.7    0.14 5.8E-06   28.8   4.6   65   37-106   198-263 (372)
238 1xdz_A Methyltransferase GIDB;  92.3    0.11 4.5E-06   29.5   3.8   63   46-108    69-133 (240)
239 3g7u_A Cytosine-specific methy  92.2    0.23 9.5E-06   27.5   5.3   76   49-128     3-82  (376)
240 2py6_A Methyltransferase FKBM;  92.2    0.25 1.1E-05   27.2   5.5   50   44-93    223-275 (409)
241 2zkq_m 40S ribosomal protein S  90.8    0.34 1.4E-05   26.4   5.0   48  233-280    22-75  (152)
242 1zg3_A Isoflavanone 4'-O-methy  90.8     0.2 8.3E-06   27.9   3.7   82   46-139   192-278 (358)
243 1g60_A Adenine-specific methyl  90.4    0.69 2.9E-05   24.5   6.2   30   99-130     7-36  (260)
244 1fp2_A Isoflavone O-methytrans  90.3    0.94   4E-05   23.7   6.9   82   46-139   187-273 (352)
245 1ej0_A FTSJ; methyltransferase  89.0    0.37 1.6E-05   26.2   4.0   77   45-131    20-102 (180)
246 2vqe_M 30S ribosomal protein S  89.0    0.35 1.5E-05   26.4   3.8   48  234-281    12-65  (126)
247 2px2_A Genome polyprotein [con  87.4    0.86 3.6E-05   23.9   5.0   44   36-79     62-106 (269)
248 2zig_A TTHA0409, putative modi  85.6     1.8 7.7E-05   21.9   6.2   30   99-130    24-53  (297)
249 3gpu_A DNA glycosylase; DNA gl  83.9     1.1 4.8E-05   23.2   4.2   53  226-278   147-208 (256)
250 1boo_A Protein (N-4 cytosine-s  83.7     2.1   9E-05   21.5   5.6   32   97-130    15-46  (323)
251 1tdz_A Formamidopyrimidine-DNA  82.4     1.5 6.1E-05   22.5   4.3   51  228-278   148-207 (272)
252 1eg2_A Modification methylase   82.4     2.5 0.00011   21.0   6.1   31   98-130    41-71  (319)
253 1lss_A TRK system potassium up  81.8     2.6 0.00011   20.9   6.0   78   48-131     4-83  (140)
254 2yui_A Anamorsin; cytokine-ind  80.6    0.16 6.6E-06   28.5  -1.2   75   46-128     3-77  (182)
255 2p41_A Type II methyltransfera  79.8     3.1 0.00013   20.5   5.4   42   37-78     72-114 (305)
256 2oxt_A Nucleoside-2'-O-methylt  79.7     3.1 0.00013   20.4   5.6   43   37-79     64-107 (265)
257 2g1u_A Hypothetical protein TM  79.3     1.8 7.5E-05   22.0   3.9   76   45-126    16-93  (155)
258 1ee8_A MUTM (FPG) protein; bet  77.7     3.6 0.00015   20.1   5.4   52  227-278   136-196 (266)
259 3a46_A Formamidopyrimidine-DNA  76.7     2.7 0.00011   20.8   4.2   47  231-277   151-207 (289)
260 3fwz_A Inner membrane protein   74.5     4.4 0.00018   19.5   5.2   83   48-139     7-93  (140)
261 1k82_A Formamidopyrimidine-DNA  74.4     3.8 0.00016   19.9   4.4   53  226-278   142-203 (268)
262 1mu5_A Type II DNA topoisomera  73.9     4.5 0.00019   19.4   6.7  109  169-282   189-307 (471)
263 3imf_A Short chain dehydrogena  73.7     3.3 0.00014   20.2   4.0   63   45-108     3-68  (257)
264 3lkz_A Non-structural protein   71.6     5.1 0.00021   19.1   5.2   43   36-78     83-126 (321)
265 1k3x_A Endonuclease VIII; hydr  71.6     5.1 0.00021   19.1   5.0   46  233-278   149-203 (262)
266 2z1m_A GDP-D-mannose dehydrata  71.6     5.1 0.00021   19.1   4.8   57   48-108     3-65  (345)
267 3eld_A Methyltransferase; flav  71.0     4.5 0.00019   19.4   4.2   34   36-69     70-103 (300)
268 3cxt_A Dehydrogenase with diff  70.4     5.3 0.00022   19.0   4.4   62   46-108    32-96  (291)
269 2nyu_A Putative ribosomal RNA   68.0     3.3 0.00014   20.2   3.0   24   45-68     20-43  (196)
270 3ofp_M 30S ribosomal protein S  67.4    0.61 2.6E-05   24.8  -0.9   46  234-279    11-62  (113)
271 3h7a_A Short chain dehydrogena  67.2     6.3 0.00027   18.5   5.5   61   47-108     6-69  (252)
272 3evf_A RNA-directed RNA polyme  66.2       6 0.00025   18.7   4.0   30   39-68     66-95  (277)
273 3l4b_C TRKA K+ channel protien  65.8     6.2 0.00026   18.6   4.0   72   51-130     3-81  (218)
274 1yb1_A 17-beta-hydroxysteroid   65.8     6.7 0.00028   18.4   4.6   62   46-108    29-93  (272)
275 2jah_A Clavulanic acid dehydro  64.5     7.1  0.0003   18.2   4.6   63   45-108     4-69  (247)
276 3c85_A Putative glutathione-re  63.9     7.3 0.00031   18.1   5.5   85   48-138    39-126 (183)
277 2b9w_A Putative aminooxidase;   63.1     5.2 0.00022   19.0   3.2   38   45-82      3-42  (424)
278 3ftp_A 3-oxoacyl-[acyl-carrier  63.0     6.8 0.00029   18.3   3.8   62   46-108    26-90  (270)
279 2hmt_A YUAA protein; RCK, KTN,  62.8     6.6 0.00028   18.4   3.7   84   48-138     6-91  (144)
280 2qq5_A DHRS1, dehydrogenase/re  61.4     8.1 0.00034   17.9   4.3   63   45-108     2-67  (260)
281 2jae_A L-amino acid oxidase; o  61.1     7.5 0.00032   18.1   3.7   37   45-82      8-46  (489)
282 2bi7_A UDP-galactopyranose mut  60.5     6.6 0.00028   18.4   3.3   40   47-87      2-43  (384)
283 3nzo_A UDP-N-acetylglucosamine  60.5     8.4 0.00035   17.8   4.5   61   47-108    34-102 (399)
284 2ae2_A Protein (tropinone redu  59.4     8.8 0.00037   17.6   4.4   62   46-108     7-71  (260)
285 2plw_A Ribosomal RNA methyltra  59.3     7.4 0.00031   18.1   3.4   53   46-108    21-76  (201)
286 1o94_A Tmadh, trimethylamine d  58.8     7.6 0.00032   18.0   3.4   36   47-83    388-425 (729)
287 1zem_A Xylitol dehydrogenase;   58.2     9.2 0.00039   17.5   4.4   62   46-108     5-69  (262)
288 3gdg_A Probable NADP-dependent  57.7     9.4 0.00039   17.5   5.7   77   26-108     3-86  (267)
289 2vdc_G Glutamate synthase [NAD  56.3       9 0.00038   17.6   3.4   38   47-85    121-160 (456)
290 1ps9_A 2,4-dienoyl-COA reducta  55.2     9.3 0.00039   17.5   3.4   38   46-84    371-410 (671)
291 3hdq_A UDP-galactopyranose mut  54.8     8.6 0.00036   17.7   3.1   43   45-88     26-70  (397)
292 3iht_A S-adenosyl-L-methionine  54.2      11 0.00045   17.1   6.1   66   35-107    29-95  (174)
293 3im8_A Malonyl acyl carrier pr  53.9      10 0.00043   17.3   3.4   26   41-70     77-102 (307)
294 2oo3_A Protein involved in cat  53.7     4.5 0.00019   19.4   1.6  120   38-164    85-211 (283)
295 2ku7_A MLL1 PHD3-CYP33 RRM chi  53.1     6.2 0.00026   18.6   2.2   24  117-140    63-86  (140)
296 2b4q_A Rhamnolipids biosynthes  52.9      11 0.00047   17.0   4.7   61   46-108    27-90  (276)
297 1rjd_A PPM1P, carboxy methyl t  52.5      11 0.00048   16.9   6.3   41   47-88     97-137 (334)
298 3ijr_A Oxidoreductase, short c  51.7      12 0.00049   16.9   4.9   63   45-108    44-110 (291)
299 1fmc_A 7 alpha-hydroxysteroid   51.2      12  0.0005   16.8   4.2  113   46-165     9-136 (255)
300 1v0j_A UDP-galactopyranose mut  50.2     7.9 0.00033   17.9   2.4   41   48-88      7-49  (399)
301 3ctm_A Carbonyl reductase; alc  50.1      12 0.00052   16.7   4.7   62   46-108    32-96  (279)
302 1nm2_A Malonyl COA:acyl carrie  49.7      13 0.00053   16.7   5.0   13   54-66     95-107 (317)
303 3k30_A Histamine dehydrogenase  49.2      13 0.00054   16.6   3.6   37   48-85    391-429 (690)
304 1hxh_A 3BETA/17BETA-hydroxyste  49.0      13 0.00054   16.6   4.3   60   45-108     3-65  (253)
305 3gmb_A 2-methyl-3-hydroxypyrid  48.8      11 0.00045   17.1   2.9   37   45-82     44-82  (415)
306 2vou_A 2,6-dihydroxypyridine h  48.5      13 0.00053   16.7   3.2   35   47-82      4-40  (397)
307 1ae1_A Tropinone reductase-I;   47.6      14 0.00057   16.5   4.8   62   46-108    19-83  (273)
308 2cjk_A Nuclear polyadenylated   47.2     5.7 0.00024   18.8   1.3   22  119-140    89-110 (167)
309 1iqt_A AUF1, heterogeneous nuc  47.0       7 0.00029   18.3   1.7   20  121-140     3-22  (75)
310 2k4m_A TR8_protein, UPF0146 pr  47.0      14 0.00058   16.4   6.2   68   26-111    18-86  (153)
311 1sjr_A Polypyrimidine tract-bi  46.9     5.3 0.00022   19.0   1.1   21  120-140    49-69  (164)
312 2jvr_A Nucleolar protein 3; RN  46.9     6.3 0.00026   18.5   1.4   21  120-140    31-51  (111)
313 3lyl_A 3-oxoacyl-(acyl-carrier  46.5      14 0.00059   16.4   3.8   61   47-108     4-67  (247)
314 1sez_A Protoporphyrinogen oxid  46.3      14  0.0006   16.3   3.2   35   47-82     12-48  (504)
315 1rkx_A CDP-glucose-4,6-dehydra  46.2      14  0.0006   16.3   4.4   59   47-108     8-70  (357)
316 3nrn_A Uncharacterized protein  46.2      13 0.00054   16.6   2.9   14  120-133   234-247 (421)
317 1w6u_A 2,4-dienoyl-COA reducta  45.7      15 0.00061   16.3   4.6   63   45-108    23-89  (302)
318 1rk8_A CG8781-PA, CG8781-PA pr  45.7     8.1 0.00034   17.9   1.8   22  119-140    74-95  (165)
319 2c07_A 3-oxoacyl-(acyl-carrier  45.4      15 0.00062   16.2   4.3   62   46-108    42-106 (285)
320 2hzc_A Splicing factor U2AF 65  45.0     7.7 0.00032   18.0   1.6   22  119-140     8-29  (87)
321 2dha_A FLJ20171 protein; RRM d  44.7      13 0.00054   16.6   2.7   19  122-140    28-46  (123)
322 3im9_A MCAT, MCT, malonyl COA-  44.5      11 0.00048   16.9   2.4   12   54-65     94-105 (316)
323 3mdf_A Peptidyl-prolyl CIS-tra  44.1      12 0.00051   16.8   2.5   24  117-140     7-30  (85)
324 1d5t_A Guanine nucleotide diss  44.1      12 0.00049   16.9   2.5   32   50-82      8-41  (433)
325 1zk4_A R-specific alcohol dehy  43.8      16 0.00065   16.1   3.7   63   44-108     2-67  (251)
326 3md1_A Nuclear and cytoplasmic  43.3       8 0.00034   17.9   1.5   21  120-140     4-24  (83)
327 3gaf_A 7-alpha-hydroxysteroid   42.7      16 0.00068   16.0   3.9   62   46-108    10-74  (256)
328 2bry_A NEDD9 interacting prote  42.6      16 0.00065   16.1   2.9   52   29-81     65-126 (497)
329 2cqp_A RNA-binding protein 12;  42.2      11 0.00046   17.1   2.1   22  119-140    17-38  (98)
330 2eih_A Alcohol dehydrogenase;   42.2      16 0.00069   15.9   4.5   49   41-89    160-210 (343)
331 2cpf_A RNA binding motif prote  42.1      11 0.00044   17.2   2.0   22  119-140     7-28  (98)
332 1gte_A Dihydropyrimidine dehyd  42.1      14  0.0006   16.3   2.7   31   48-78    332-364 (1025)
333 2iid_A L-amino-acid oxidase; f  42.1      17  0.0007   15.9   3.0   35   48-83     33-69  (498)
334 2f9d_A PRE-mRNA branch site pr  41.8      12  0.0005   16.8   2.2   23  118-140    19-41  (125)
335 1i8t_A UDP-galactopyranose mut  41.4      16 0.00068   16.0   2.8   38   50-88      3-42  (367)
336 1u6f_A Tcubp1, RNA-binding pro  41.3      10 0.00043   17.2   1.8   21  120-140    45-65  (139)
337 1x4a_A Splicing factor, argini  40.9      10 0.00044   17.2   1.8   21  120-140    25-45  (109)
338 1b37_A Protein (polyamine oxid  40.9      13 0.00056   16.5   2.3   35   48-82      4-40  (472)
339 2qc3_A MCT, malonyl COA-acyl c  40.8      15 0.00061   16.3   2.5   24   43-66     78-101 (303)
340 2e58_A MNMC2; tRNA wobble urid  40.7      17 0.00073   15.8   3.5   60   23-82     61-136 (308)
341 3grp_A 3-oxoacyl-(acyl carrier  40.5      17 0.00074   15.8   4.0   82   46-131    25-115 (266)
342 2e1m_A L-glutamate oxidase; L-  40.5      17 0.00074   15.8   2.9   34   45-79     41-76  (376)
343 1xhc_A NADH oxidase /nitrite r  40.1      18 0.00075   15.7   3.1   36   46-81      6-41  (367)
344 2zat_A Dehydrogenase/reductase  40.0      18 0.00075   15.7   4.2   64   44-108    10-76  (260)
345 2cqg_A TDP-43, TAR DNA-binding  40.0     9.1 0.00038   17.5   1.4   22  120-141    18-39  (103)
346 2cqd_A RNA-binding region cont  40.0     7.4 0.00031   18.1   0.9   21  120-140    20-40  (116)
347 3md3_A Nuclear and cytoplasmic  39.9      11 0.00046   17.0   1.8   20  120-139    90-109 (166)
348 2g4b_A Splicing factor U2AF 65  39.8     7.4 0.00031   18.1   0.9   67   99-165    74-155 (172)
349 2ek1_A RNA-binding protein 12;  39.8      12 0.00051   16.8   2.0   23  119-141    17-39  (95)
350 2o23_A HADH2 protein; HSD17B10  39.6      18 0.00076   15.7   4.9   66   39-108     3-71  (265)
351 1hd0_A Protein (heterogeneous   39.5      11 0.00045   17.1   1.7   20  121-140     3-22  (75)
352 1h2v_Z 20 kDa nuclear CAP bind  39.4      14 0.00059   16.4   2.3   24  118-141    40-63  (156)
353 2jwn_A Embryonic polyadenylate  39.2      10 0.00044   17.2   1.6   23  119-141    38-60  (124)
354 2h1y_A Malonyl coenzyme A-acyl  38.9      19 0.00078   15.6   7.5   13   54-66    101-113 (321)
355 1x5s_A Cold-inducible RNA-bind  38.9      11 0.00047   17.0   1.7   21  120-140    15-35  (102)
356 1b7f_A Protein (SXL-lethal pro  38.8      11 0.00046   17.0   1.6   21  120-140    92-112 (168)
357 2qae_A Lipoamide, dihydrolipoy  38.7      19 0.00078   15.6   4.0   35   48-83    174-210 (468)
358 2db1_A Heterogeneous nuclear r  38.6      11 0.00047   17.0   1.7   22  119-140    19-40  (118)
359 2bcg_G Secretory pathway GDP d  38.5      16 0.00068   16.0   2.5   33   49-82     12-46  (453)
360 1ja9_A 4HNR, 1,3,6,8-tetrahydr  38.5      19 0.00079   15.6   4.3   64   44-108    17-84  (274)
361 2fy1_A RNA-binding motif prote  38.1      11 0.00048   16.9   1.6   21  120-140    10-30  (116)
362 1nff_A Putative oxidoreductase  38.0      19  0.0008   15.5   5.0   61   44-108     3-66  (260)
363 2ivd_A PPO, PPOX, protoporphyr  37.5      17 0.00071   15.9   2.4   34   48-82     16-51  (478)
364 3ek2_A Enoyl-(acyl-carrier-pro  37.5      19 0.00082   15.5   5.7   64   43-108     9-77  (271)
365 2e5i_A Heterogeneous nuclear r  37.4      11 0.00045   17.1   1.4   20  121-140    29-48  (124)
366 1wg5_A Heterogeneous nuclear r  37.3      13 0.00054   16.6   1.8   23  118-140    16-38  (104)
367 2dgx_A KIAA0430 protein; RRM d  37.3      16 0.00066   16.1   2.2   21  118-138    10-30  (96)
368 1fje_B Nucleolin RBD12, protei  37.3      16 0.00066   16.1   2.2   21  119-139    15-35  (175)
369 1xq1_A Putative tropinone redu  37.2      20 0.00083   15.5   3.8   62   46-108    12-76  (266)
370 2cpy_A RNA-binding protein 12;  37.1      13 0.00055   16.6   1.8   22  119-140    17-38  (114)
371 2bgk_A Rhizome secoisolaricire  37.1      20 0.00083   15.5   4.4   63   44-108    12-77  (278)
372 2pd4_A Enoyl-[acyl-carrier-pro  37.1      20 0.00083   15.4   6.0   63   44-108     2-69  (275)
373 1x4c_A Splicing factor, argini  37.1      12  0.0005   16.8   1.6   22  119-140    17-38  (108)
374 1wel_A RNA-binding protein 12;  37.0      14 0.00057   16.5   1.9   22  119-140    27-48  (124)
375 2dgo_A Cytotoxic granule-assoc  36.9      13 0.00056   16.5   1.8   21  120-140    18-38  (115)
376 2dh8_A DAZ-associated protein   36.8     9.7 0.00041   17.4   1.1   21  120-140    19-39  (105)
377 1wg1_A KIAA1579 protein, homol  36.8      11 0.00045   17.1   1.3   23  118-140     6-28  (88)
378 2mss_A Protein (musashi1); RNA  36.8      12 0.00048   16.9   1.5   21  121-141     3-23  (75)
379 3iei_A Leucine carboxyl methyl  36.5      20 0.00085   15.4   6.1   41   48-88     91-131 (334)
380 1fcd_A Flavocytochrome C sulfi  35.9      21 0.00087   15.3   3.1   64   47-110     1-83  (401)
381 2dnn_A RNA-binding protein 12;  35.9     8.7 0.00037   17.7   0.7   23  118-140    17-39  (109)
382 2dnl_A Cytoplasmic polyadenyla  35.7      11 0.00047   17.0   1.3   21  120-140    11-31  (114)
383 1yvv_A Amine oxidase, flavin-c  35.7      16 0.00068   16.0   2.1   32   50-82      4-37  (336)
384 1fj7_A Nucleolin RBD1, protein  35.7      13 0.00056   16.5   1.7   22  119-140    19-40  (101)
385 2qy6_A UPF0209 protein YFCK; s  35.7      21 0.00088   15.3   4.9   70   22-91     23-117 (257)
386 2hgm_A HNRPF protein, heteroge  35.7      14 0.00059   16.4   1.8   24  118-141    43-66  (126)
387 1rsg_A FMS1 protein; FAD bindi  35.6      17 0.00073   15.8   2.2   34   48-81      8-43  (516)
388 1no8_A ALY; RBD, REF1-I, BEF,   35.5      13 0.00056   16.5   1.6   22  119-140    30-51  (106)
389 3p5t_L Cleavage and polyadenyl  35.5      13 0.00056   16.5   1.6   21  120-140     4-24  (90)
390 3beg_B Splicing factor, argini  35.3     9.1 0.00038   17.6   0.7   21  120-140    19-39  (115)
391 3b4d_A Polyadenylate-binding p  35.1      18 0.00075   15.7   2.2   22  119-140     7-28  (96)
392 3lov_A Protoporphyrinogen oxid  35.1      21  0.0009   15.2   3.0   35   48-82      4-41  (475)
393 1uaw_A Mouse-musashi-1; RNP-ty  35.0     9.9 0.00041   17.3   0.9   20  121-140     4-23  (77)
394 3egn_A RNA-binding protein 40;  35.0      14 0.00058   16.4   1.6   23  118-140    46-68  (143)
395 2khc_A Testis-specific RNP-typ  34.6      12  0.0005   16.8   1.3   21  120-140    43-63  (118)
396 1xhl_A Short-chain dehydrogena  34.5      22 0.00091   15.2   3.9   63   45-108    23-91  (297)
397 2v0x_A Lamina-associated polyp  34.5     8.2 0.00035   17.8   0.4   52  192-243    68-127 (235)
398 2cqc_A Arginine/serine-rich sp  34.3      15 0.00065   16.1   1.8   22  119-140    17-38  (95)
399 2rhc_B Actinorhodin polyketide  34.3      22 0.00092   15.2   4.6   63   45-108    19-84  (277)
400 3ka7_A Oxidoreductase; structu  34.3      20 0.00084   15.4   2.4   12  120-131   243-254 (425)
401 2dhg_A TRNA selenocysteine ass  34.0      15 0.00063   16.2   1.7   22  119-140    11-32  (104)
402 3n74_A 3-ketoacyl-(acyl-carrie  33.8      22 0.00094   15.1   4.1   59   46-108     7-68  (261)
403 2wbr_A GW182, gawky, LD47780P;  33.7      15 0.00065   16.1   1.7   25  116-140     6-30  (89)
404 1whx_A Hypothetical protein ri  33.3      17 0.00072   15.8   1.9   22  119-140    12-33  (111)
405 2x1f_A MRNA 3'-END-processing   33.3      18 0.00074   15.8   2.0   22  119-140     4-25  (96)
406 2cpj_A Non-POU domain-containi  33.3     6.7 0.00028   18.4  -0.2   21  120-140    18-38  (99)
407 1p27_B RNA-binding protein 8A;  33.1      22 0.00092   15.2   2.4   23  118-140    24-46  (106)
408 2dnq_A RNA-binding protein 4B;  33.1      14  0.0006   16.3   1.5   22  120-141    11-32  (90)
409 1cvj_A Polyadenylate binding p  33.0      17  0.0007   15.9   1.8   24  118-141    99-122 (190)
410 3k89_A Malonyl COA-ACP transac  32.9      23 0.00097   15.0   3.4   16   50-65     87-102 (314)
411 1x4b_A Heterogeneous nuclear r  32.9      14 0.00058   16.4   1.4   21  120-140    30-50  (116)
412 2ywk_A Putative RNA-binding pr  32.9      22 0.00094   15.1   2.4   22  119-140    18-39  (95)
413 3ic9_A Dihydrolipoamide dehydr  32.7      23 0.00095   15.1   2.4   34   48-82    174-209 (492)
414 2aym_A U1 small nuclear ribonu  32.7      19 0.00082   15.5   2.1   24  117-140     8-31  (83)
415 2e5g_A U6 snRNA-specific termi  32.5      20 0.00086   15.4   2.2   23  118-140     9-31  (94)
416 2cpd_A Apobec-1 stimulating pr  32.2      21 0.00088   15.3   2.2   23  118-140    16-38  (99)
417 2kn4_A Immunoglobulin G-bindin  32.2      13 0.00056   16.5   1.2   22  119-140    72-93  (158)
418 2jvo_A Nucleolar protein 3; nu  31.8      15 0.00064   16.2   1.4   22  119-140    33-54  (108)
419 3l9w_A Glutathione-regulated p  31.8      24   0.001   14.9   5.4   78   47-131     3-82  (413)
420 3m1a_A Putative dehydrogenase;  31.7      24   0.001   14.9   4.1   58   47-108     4-64  (281)
421 2dgu_A Heterogeneous nuclear r  31.5      20 0.00083   15.4   2.0   23  118-140    12-34  (103)
422 1xdi_A RV3303C-LPDA; reductase  31.5      21 0.00088   15.3   2.1   32   49-80      3-38  (499)
423 2ad9_A Polypyrimidine tract-bi  31.4      14 0.00057   16.5   1.1   24  117-140    31-54  (119)
424 3afn_B A1-R, 4-deoxy-L-erythro  31.4      24   0.001   14.9   4.5   62   46-108     5-70  (258)
425 1sjq_A Polypyrimidine tract-bi  31.4      21 0.00088   15.3   2.1   24  117-140    16-39  (105)
426 2dhx_A Poly (ADP-ribose) polym  31.4      17 0.00073   15.8   1.7   49  119-167    10-68  (104)
427 2f3j_A RNA and export factor b  31.3      15 0.00065   16.1   1.4   21  120-140    91-111 (177)
428 2div_A TRNA selenocysteine ass  31.3      22 0.00091   15.2   2.2   24  118-141    10-33  (99)
429 2dnm_A SRP46 splicing factor;   31.1      17  0.0007   15.9   1.5   21  120-140    16-36  (103)
430 3d2w_A TAR DNA-binding protein  31.1      17 0.00071   15.9   1.6   22  119-140    13-34  (89)
431 2cpe_A RNA-binding protein EWS  30.9      22 0.00093   15.1   2.2   24  117-140    15-38  (113)
432 1bdb_A CIS-biphenyl-2,3-dihydr  30.8      25  0.0011   14.8   5.1   59   46-108     3-64  (277)
433 2cq4_A RNA binding motif prote  30.7      15 0.00063   16.2   1.3   22  119-140    27-48  (114)
434 2ytc_A PRE-mRNA-splicing facto  30.7      14  0.0006   16.3   1.1   23  118-140    13-35  (85)
435 2dgv_A HnRNP M, heterogeneous   30.6      22 0.00093   15.1   2.1   22  119-140    10-31  (92)
436 2cq3_A RNA-binding protein 9;   30.4      18 0.00076   15.7   1.6   21  120-140    18-38  (103)
437 1k2w_A Sorbitol dehydrogenase;  30.4      25  0.0011   14.8   4.2   59   46-108     3-64  (256)
438 3c4a_A Probable tryptophan hyd  30.4      25  0.0011   14.8   2.8   34   50-83      2-38  (381)
439 2cqh_A IGF-II mRNA-binding pro  30.4      16 0.00068   16.0   1.4   21  120-140    11-31  (93)
440 3ex7_B RNA-binding protein 8A;  30.4      23 0.00096   15.0   2.2   23  118-140    23-45  (126)
441 1n4w_A CHOD, cholesterol oxida  30.3      24   0.001   14.9   2.3   31   49-80      6-38  (504)
442 2do0_A HnRNP M, heterogeneous   30.3      18 0.00074   15.8   1.6   22  119-140    17-38  (114)
443 2cpz_A CUG triplet repeat RNA-  30.3      16 0.00069   15.9   1.4   22  119-140    27-48  (115)
444 1xkq_A Short-chain reductase f  30.3      26  0.0011   14.8   3.9   62   46-108     4-71  (280)
445 2dgp_A Bruno-like 4, RNA bindi  30.1      19 0.00078   15.6   1.6   21  120-140    16-36  (106)
446 1x4h_A RNA-binding protein 28;  30.0      22 0.00091   15.2   2.0   23  118-140    16-38  (111)
447 3fg2_P Putative rubredoxin red  30.0      26  0.0011   14.7   2.7   35   47-82    141-177 (404)
448 2e4g_A Tryptophan halogenase;   29.9      26  0.0011   14.7   2.6   34   48-81     25-62  (550)
449 2e5j_A Methenyltetrahydrofolat  29.8      25  0.0011   14.8   2.3   22  119-140    21-42  (97)
450 2e44_A Insulin-like growth fac  29.7      16 0.00069   16.0   1.3   23  119-141    17-39  (96)
451 2hvz_A Splicing factor, argini  29.7      18 0.00074   15.8   1.5   20  121-140     4-23  (101)
452 1fht_A U1A117, U1 small nuclea  29.7      11 0.00045   17.1   0.4   21  118-138     9-29  (116)
453 2adc_A Polypyrimidine tract-bi  29.6      26  0.0011   14.7   2.8   21  119-139   153-173 (229)
454 3ksu_A 3-oxoacyl-acyl carrier   29.4      26  0.0011   14.7   4.6   62   46-108     9-76  (262)
455 1x5t_A Splicing factor 3B subu  29.4      26  0.0011   14.7   2.3   21  120-140     8-28  (96)
456 2weu_A Tryptophan 5-halogenase  29.4      22 0.00093   15.1   1.9   32   49-80      3-38  (511)
457 1s79_A Lupus LA protein; RRM,   29.2      26  0.0011   14.7   2.3   24  118-141    12-35  (103)
458 2a3j_A U1 small nuclear ribonu  28.8      19 0.00082   15.5   1.6   20  119-138    31-50  (127)
459 1wex_A Hypothetical protein (r  28.7      12 0.00051   16.7   0.5   25  116-140    14-38  (104)
460 2err_A Ataxin-2-binding protei  28.5      21 0.00086   15.3   1.6   22  119-140    31-52  (109)
461 3bs9_A Nucleolysin TIA-1 isofo  28.4      22 0.00093   15.2   1.8   21  120-140     9-29  (87)
462 2qa1_A PGAE, polyketide oxygen  28.4      25   0.001   14.8   2.0   36   46-82      9-46  (500)
463 2fc9_A NCL protein; structure   28.3      19  0.0008   15.5   1.5   23  117-139    15-37  (101)
464 2cph_A RNA binding motif prote  28.3      21 0.00087   15.3   1.6   22  119-140    17-38  (107)
465 2hgl_A HNRPF protein, heteroge  28.3      17 0.00072   15.8   1.2   22  119-140    46-67  (136)
466 1wf0_A TDP-43, TAR DNA-binding  28.1      19 0.00082   15.5   1.5   23  118-140     6-28  (88)
467 2hgn_A Heterogeneous nuclear r  28.0      19 0.00082   15.5   1.4   22  119-140    48-69  (139)
468 1x5o_A RNA binding motif, sing  27.9      14  0.0006   16.3   0.7   21  120-140    28-48  (114)
469 2dng_A Eukaryotic translation   27.9      18 0.00074   15.8   1.2   22  119-140    17-38  (103)
470 3o38_A Short chain dehydrogena  27.9      28  0.0012   14.5   4.6   63   45-108    19-86  (266)
471 3dfz_A SIRC, precorrin-2 dehyd  27.7      28  0.0012   14.5   4.0   60   46-110    29-90  (223)
472 3nmr_A Cugbp ELAV-like family   27.6      22 0.00092   15.2   1.6   23  118-140    96-118 (175)
473 2a8x_A Dihydrolipoyl dehydroge  27.5      29  0.0012   14.5   2.3   13   51-63      6-18  (464)
474 3cgv_A Geranylgeranyl reductas  27.5      29  0.0012   14.5   2.4   32   50-82      6-39  (397)
475 2cuy_A Malonyl COA-[acyl carri  27.4      29  0.0012   14.4   3.5   12   54-65     86-97  (305)
476 1whw_A Hypothetical protein ri  27.3      22 0.00093   15.1   1.6   21  120-140    11-31  (99)
477 2dnp_A RNA-binding protein 14;  27.3      22 0.00093   15.1   1.6   22  120-141    12-33  (90)
478 1kyq_A Met8P, siroheme biosynt  27.2      29  0.0012   14.4   4.0   42   46-87     11-55  (274)
479 2dnz_A Probable RNA-binding pr  26.8      28  0.0012   14.5   2.1   21  120-140     8-28  (95)
480 1oo0_B CG8781-PA, drosophila Y  26.8      29  0.0012   14.4   2.3   22  119-140    28-49  (110)
481 1fxl_A Paraneoplastic encephal  26.7      23 0.00097   15.0   1.6   21  120-140    91-111 (167)
482 2qfj_A FBP-interacting repress  26.7      23 0.00097   15.0   1.6   21  120-140   128-148 (216)
483 1wi8_A EIF-4B, eukaryotic tran  26.6      17 0.00073   15.8   1.0   22  119-140    17-38  (104)
484 3grk_A Enoyl-(acyl-carrier-pro  26.6      30  0.0012   14.4   4.4   63   43-107    26-93  (293)
485 1njr_A 32.1 kDa protein in ADH  26.5      24   0.001   14.9   1.7   51   58-108     2-58  (284)
486 1wez_A HnRNP H', FTP-3, hetero  26.5      17 0.00071   15.9   0.9   24  117-140    15-38  (102)
487 2jhf_A Alcohol dehydrogenase E  26.2      30  0.0013   14.3   5.4   53   37-89    181-235 (374)
488 1ebd_A E3BD, dihydrolipoamide   26.1      30  0.0013   14.3   2.5   28   51-79      6-35  (455)
489 1fjc_A Nucleolin RBD2, protein  26.0      25   0.001   14.8   1.7   24  117-140    16-39  (96)
490 3cw1_K U1 small nuclear ribonu  26.0      23 0.00097   15.0   1.5   22  119-140   104-125 (216)
491 2xnq_A Nuclear polyadenylated   25.9      23 0.00098   15.0   1.6   21  120-140    25-46  (97)
492 2jrs_A RNA-binding protein 39;  25.9      21 0.00089   15.3   1.3   21  120-140    29-49  (108)
493 3n9u_C Cleavage and polyadenyl  25.9      24   0.001   14.9   1.6   22  119-140    57-78  (156)
494 2qa2_A CABE, polyketide oxygen  25.7      31  0.0013   14.3   2.3   35   47-82     11-47  (499)
495 1vl8_A Gluconate 5-dehydrogena  25.6      31  0.0013   14.2   4.3   62   46-108    19-84  (267)
496 2dgs_A DAZ-associated protein   25.5      21 0.00086   15.3   1.2   21  120-140    13-33  (99)
497 2dis_A Unnamed protein product  25.4      26  0.0011   14.7   1.7   22  120-141    11-32  (109)
498 3kzv_A Uncharacterized oxidore  25.2      31  0.0013   14.2   3.4   58   48-108     2-63  (254)
499 3jsk_A Cypbp37 protein; octame  25.0      16 0.00066   16.1   0.5   53   30-82     61-116 (344)
500 3iwa_A FAD-dependent pyridine   25.0      32  0.0013   14.2   3.4   34   49-82      4-40  (472)

No 1  
>3gru_A Dimethyladenosine transferase; rossman fold, ribosomal assembly S-adenosyl-L-methionine, rRNA, methyltransferase, RNA-binding; HET: AMP; 1.60A {Methanocaldococcus jannaschii} PDB: 3grr_A* 3grv_A* 3gry_A* 3fyd_A 3fyc_A*
Probab=100.00  E-value=0  Score=535.08  Aligned_cols=253  Identities=31%  Similarity=0.471  Sum_probs=223.8

Q ss_pred             HCCCCCCCCCCCCCCCCHHHHHHHHHHCCCCCCCEEEEECCCCCHHHHHHHHCCCCEEEEECCCCCCHHHHHHHHHHHHC
Q ss_conf             81898433658411239899999999719899987999758988234677502352599842554303688787532200
Q gi|254780398|r   16 HYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQHPN   95 (284)
Q Consensus        16 ~~~~~p~k~lGQnFL~d~~i~~~iv~~~~~~~~~~VlEIGpG~G~LT~~Ll~~~~~~v~aiEiD~~~~~~l~~~~~~~~~   95 (284)
                      ++.++|||+||||||+|++++++||+.+++.++|.|||||||+|+||..|+++ +++|+|||+|++++++|++.+...+ 
T Consensus        19 ~~mi~pkK~lGQNFL~d~~i~~kIv~~~~~~~~d~VlEIGpG~G~LT~~Ll~~-~~~v~aiEiD~~l~~~L~~~~~~~~-   96 (295)
T 3gru_A           19 SHMFKPKKKLGQCFLIDKNFVNKAVESANLTKDDVVLEIGLGKGILTEELAKN-AKKVYVIEIDKSLEPYANKLKELYN-   96 (295)
T ss_dssp             -----------CCEECCHHHHHHHHHHTTCCTTCEEEEECCTTSHHHHHHHHH-SSEEEEEESCGGGHHHHHHHHHHCS-
T ss_pred             CCCCCCCCCCCCCCCCCHHHHHHHHHHCCCCCCCEEEEECCCHHHHHHHHHHC-CCCEEEEEECHHHHHHHHHHHHHCC-
T ss_conf             75724888778230289999999999638999995999799746999999816-8966999988799999997676427-


Q ss_pred             CCCCCHHHHCCCCHHHHCCCCCCEEEEECCCHHHHHHHHHHHHHHHCCCCCCCHHHHEEEHHHHHHHHHCCCHHHHHHHH
Q ss_conf             12200000001431552133222011202322467889999985201000000110203344788753012312332345
Q gi|254780398|r   96 RLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLS  175 (284)
Q Consensus        96 ~~~ii~~Dal~~d~~~~~~~~~~~~vvgNLPYnIss~Il~~ll~~~~~~~~~~~~vlmvQkEvA~Rl~a~pg~k~Yg~LS  175 (284)
                      +++++++||+++|++.+    .+++|||||||||||+|+++|+...     +..+++|+|||||+||+|+||+|+||+||
T Consensus        97 n~~ii~~D~l~~d~~~~----~~~~vv~NLPYnIss~il~~l~~~~-----~~~~vlmvQkEvAeRi~A~pgsk~Yg~LS  167 (295)
T 3gru_A           97 NIEIIWGDALKVDLNKL----DFNKVVANLPYQISSPITFKLIKRG-----FDLAVLMYQYEFAKRMVAAAGTKDYGRLS  167 (295)
T ss_dssp             SEEEEESCTTTSCGGGS----CCSEEEEECCGGGHHHHHHHHHHHC-----CSEEEEEEEHHHHHHHHCCTTSTTCSHHH
T ss_pred             CEEEEECCCCCCCHHHC----CCCEEEEEEHHHHCCHHHHCCCCCC-----CCCEEEEEHHHHHHHHHCCCCCHHHHHHH
T ss_conf             73688512103771333----7553786202642541132045555-----54002221389999974279980256777


Q ss_pred             HHHCCCCCEEEECCCCCCEECCCCCCCEEEEEECCCCCCC-CCCHHHHHHHHHHHHCCCCHHHHHHHHHCCC-----HH-
Q ss_conf             4320133201200011000010578757887301258855-3476789999999972731389998763181-----78-
Q gi|254780398|r  176 VLTGWRTKATMMFDISPHVFFPSPKVTSTVIHFIPHLNPI-PCCLESLKKITQEAFGKRRKTLRQSLKRLGG-----EN-  248 (284)
Q Consensus       176 v~~q~~~~v~~~~~V~~~~F~P~PkVdS~vi~l~pk~~~~-~~~~~~~~~~~~~~F~~RRK~l~~~L~~~~~-----~~-  248 (284)
                      |++|++|+++++++|||+||+|+|||||+||+++|++.+. ..+.+.|+++++.+|++|||+|+|+|+....     .+ 
T Consensus       168 V~~q~~~~v~~~~~V~~~~F~P~PKVdSavv~l~p~~~~~~~~~~~~f~~~vr~~F~~RRK~l~n~L~~~~~~~~~~k~~  247 (295)
T 3gru_A          168 VAVQSRADVEIVAKVPPSAFYPKPKVYSAIVKIKPNKGKYHIENENFFDDFLRAIFQHRNKSVRKALIDSSKELNYNKDE  247 (295)
T ss_dssp             HHHHTTEEEEEEEEECGGGEESCCSSCEEEEEEEECHHHHCCSCHHHHHHHHHHHHTTTTSBHHHHHHHTGGGGTCCHHH
T ss_pred             HHHHHHEEEEEEEEECHHHCCCCCCEEEEEEEEEECCCCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCHHH
T ss_conf             77652101589258887877899973089999984688634235889999999988142147999988765541789999


Q ss_pred             ---HHHH-------CCCCCCCCHHCCCHHHHHHHHHHHHHC
Q ss_conf             ---9997-------877746571208999999999998636
Q gi|254780398|r  249 ---LLHQ-------AGIETNLRAENLSIEDFCRITNILTDN  279 (284)
Q Consensus       249 ---~l~~-------~~i~~~~R~e~Ls~~~~~~L~~~l~~~  279 (284)
                         +++.       .+..++.|||+||++||++|++.+.+.
T Consensus       248 ~~~~l~~~l~~~~~~~~~~~~R~e~Ls~e~f~~L~~~l~~~  288 (295)
T 3gru_A          248 MKKILEDFLNTNSEIKNLINEKVFKLSVKDIVNLSNEFYRF  288 (295)
T ss_dssp             HHHHHHHHHTTCHHHHHHHTSBGGGSCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHCCCCCCCCCCCCCHHHCCHHHHHHHHHHHHHH
T ss_conf             99999974044334656643472329999999999999999


No 2  
>3fut_A Dimethyladenosine transferase; methyltransferase, dimethyltransferase, dual-specific methyltransferase, 16S rRNA methyltransferase; 1.52A {Thermus thermophilus HB8} PDB: 3fuu_A* 3fuv_A 3fuw_A* 3fux_A*
Probab=100.00  E-value=0  Score=522.60  Aligned_cols=259  Identities=35%  Similarity=0.577  Sum_probs=233.3

Q ss_pred             CCHHHHHHHHHCCCCCCCCCCCCCCCCHHHHHHHHHHCCCCCCCEEEEECCCCCHHHHHHHHCCCCEEEEECCCCCCHHH
Q ss_conf             84479999998189843365841123989999999971989998799975898823467750235259984255430368
Q gi|254780398|r    6 KSHSLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPI   85 (284)
Q Consensus         6 ~~~~i~~ll~~~~~~p~k~lGQnFL~d~~i~~~iv~~~~~~~~~~VlEIGpG~G~LT~~Ll~~~~~~v~aiEiD~~~~~~   85 (284)
                      ..+++|++++.++++|+|+||||||+|++++++|++.+++. +|.|||||||+|+||+.|++.+ ++|+|||+|+++++.
T Consensus         6 ~p~~~r~~l~~~~~~~kK~lGQnFL~d~~i~~~iv~~~~~~-~~~VlEIGpG~G~LT~~L~~~~-~~v~avE~D~~l~~~   83 (271)
T 3fut_A            6 SPQSVRALLERHGLFADKRFGQNFLVSEAHLRRIVEAARPF-TGPVFEVGPGLGALTRALLEAG-AEVTAIEKDLRLRPV   83 (271)
T ss_dssp             CHHHHHHHHHHTTCCCSTTSSCCEECCHHHHHHHHHHHCCC-CSCEEEECCTTSHHHHHHHHTT-CCEEEEESCGGGHHH
T ss_pred             CHHHHHHHHHHCCCCCCCCCCCCCCCCHHHHHHHHHHHCCC-CCCEEEECCCCCHHHHHHHHCC-CCEEEEEECHHHHHH
T ss_conf             87999999997699988777845038989999999965899-9988996797719999999608-967999837067888


Q ss_pred             HHHHHHHHHCCCCCCHHHHCCCCHHHHCCCCCCEEEEECCCHHHHHHHHHHHHHHHCCCCCCCHHHHEEEHHHHHHHHHC
Q ss_conf             87875322001220000000143155213322201120232246788999998520100000011020334478875301
Q gi|254780398|r   86 LKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQ  165 (284)
Q Consensus        86 l~~~~~~~~~~~~ii~~Dal~~d~~~~~~~~~~~~vvgNLPYnIss~Il~~ll~~~~~~~~~~~~vlmvQkEvA~Rl~a~  165 (284)
                      |++.+...+  ..++++|++..++..   ...+++|||||||||||+|+.+++....    +..|++|+|||||+|++|+
T Consensus        84 L~~~~~~~~--~~~i~~~~~~~~~~~---~~~~~~vv~NLPY~Ist~ii~~ll~~~~----~~~~vlm~QkEvA~Ri~a~  154 (271)
T 3fut_A           84 LEETLSGLP--VRLVFQDALLYPWEE---VPQGSLLVANLPYHIATPLVTRLLKTGR----FARLVFLVQKEVAERMTAR  154 (271)
T ss_dssp             HHHHTTTSS--EEEEESCGGGSCGGG---SCTTEEEEEEECSSCCHHHHHHHHHHCC----EEEEEEEEEHHHHHHHTCC
T ss_pred             HHHHHHHCC--HHHHHHHHHHHHHHC---CCCCEEEECCCCHHHHHHHHHHHCCCCC----CCCCEEEEHHHHHHHHHCC
T ss_conf             875433301--033346555310330---7764267236521326799986034565----5441343108999998637


Q ss_pred             CCHHHHHHHHHHHCCCCCEEEECCCCCCEECCCCCCCEEEEEECCCCCCCCCCHHHHHHHHHHHHCCCCHHHHHHHHHCC
Q ss_conf             23123323454320133201200011000010578757887301258855347678999999997273138999876318
Q gi|254780398|r  166 KNSPHYGRLSVLTGWRTKATMMFDISPHVFFPSPKVTSTVIHFIPHLNPIPCCLESLKKITQEAFGKRRKTLRQSLKRLG  245 (284)
Q Consensus       166 pg~k~Yg~LSv~~q~~~~v~~~~~V~~~~F~P~PkVdS~vi~l~pk~~~~~~~~~~~~~~~~~~F~~RRK~l~~~L~~~~  245 (284)
                      ||+++||+||+++|++|+++++++|||++|+|+|||||+||+++|++..   +.+.++++++.+|++|||+|+|+|++..
T Consensus       155 ~~~k~y~~lSv~~q~~~~~~~~~~V~~~~F~P~PkVdS~vv~l~~k~~~---~~~~~~~~v~~~F~~RRK~l~n~L~~~~  231 (271)
T 3fut_A          155 PKTPAYGVLTLRVAHHAVAERLFDLPPGAFFPPPKVWSSLVRLTPTGAL---DDPGLFRLVEAAFGKRRKTLLNALAAAG  231 (271)
T ss_dssp             TTSTTCSHHHHHHHHHEEEEEEEEECGGGEESCCSSCEEEEEEEECSCC---CCHHHHHHHHHHTSSTTSCHHHHHHHTT
T ss_pred             CCCCCCCCCHHHHHHHHHCCCCCCCCCCCCCCCCCEEEEEEEECCCCCC---CHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_conf             9975658246776663403546545887899999536888853256655---6179999999999866579999987636


Q ss_pred             -C----HHHHHHCCCCCCCCHHCCCHHHHHHHHHHHHH
Q ss_conf             -1----78999787774657120899999999999863
Q gi|254780398|r  246 -G----ENLLHQAGIETNLRAENLSIEDFCRITNILTD  278 (284)
Q Consensus       246 -~----~~~l~~~~i~~~~R~e~Ls~~~~~~L~~~l~~  278 (284)
                       +    .++++++|++++.|||+|+++||++|++.|++
T Consensus       232 ~~~~~~~~~l~~~~i~~~~R~e~Ls~~~~~~L~~~l~~  269 (271)
T 3fut_A          232 YPKARVEEALRALGLPPRVRAEELDLEAFRRLREGLEG  269 (271)
T ss_dssp             CCHHHHHHHHHHTTCCTTCCGGGCCHHHHHHHHHHHC-
T ss_pred             CCHHHHHHHHHHCCCCCCCCHHHCCHHHHHHHHHHHHC
T ss_conf             88889999999869796639154999999999999865


No 3  
>1zq9_A Probable dimethyladenosine transferase; SGC, structural genomics, structural genomics consortium; HET: SAM; 1.90A {Homo sapiens} SCOP: c.66.1.24
Probab=100.00  E-value=0  Score=519.15  Aligned_cols=248  Identities=27%  Similarity=0.451  Sum_probs=225.2

Q ss_pred             CCCCCCCCCCCCHHHHHHHHHHCCCCCCCEEEEECCCCCHHHHHHHHCCCCEEEEECCCCCCHHHHHHHHHHH--HCCCC
Q ss_conf             4336584112398999999997198999879997589882346775023525998425543036887875322--00122
Q gi|254780398|r   21 PKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQH--PNRLE   98 (284)
Q Consensus        21 p~k~lGQnFL~d~~i~~~iv~~~~~~~~~~VlEIGpG~G~LT~~Ll~~~~~~v~aiEiD~~~~~~l~~~~~~~--~~~~~   98 (284)
                      +.|.||||||+|++++++||+.+++.++|.|||||||+|+||+.|++++ ++|+|||+|+++++.|++.+...  .++++
T Consensus         2 ~n~~LGQnFL~d~~i~~~Iv~~~~~~~~d~VlEIGPG~G~LT~~Ll~~~-~~v~aiE~D~~l~~~L~~~~~~~~~~~~~~   80 (285)
T 1zq9_A            2 SNTGIGQHILKNPLIINSIIDKAALRPTDVVLEVGPGTGNMTVKLLEKA-KKVVACELDPRLVAELHKRVQGTPVASKLQ   80 (285)
T ss_dssp             ------CCEECCHHHHHHHHHHTCCCTTCEEEEECCTTSTTHHHHHHHS-SEEEEEESCHHHHHHHHHHHTTSTTGGGEE
T ss_pred             CCCCCCCCCCCCHHHHHHHHHHHCCCCCCEEEEECCCCHHHHHHHHHCC-CCEEEEEECHHHHHHHHHHHHCCCCCCCEE
T ss_conf             9998684607798999999997089999979996897219999998049-966999987899999998762012100344


Q ss_pred             CCHHHHCCCCHHHHCCCCCCEEEEECCCHHHHHHHHHHHHHHHCCCCCCCHHHHEEEHHHHHHHHHCCCHHHHHHHHHHH
Q ss_conf             00000001431552133222011202322467889999985201000000110203344788753012312332345432
Q gi|254780398|r   99 IIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLT  178 (284)
Q Consensus        99 ii~~Dal~~d~~~~~~~~~~~~vvgNLPYnIss~Il~~ll~~~~~~~~~~~~vlmvQkEvA~Rl~a~pg~k~Yg~LSv~~  178 (284)
                      ++++|++++|++.      +++|||||||||||+|+.+++.+..   .+..|++|+|||||+||+|+||+++||+|||++
T Consensus        81 ii~~D~l~~d~~~------~~~vVgNLPYnIss~ii~~~~~~~~---~~~~~vlm~QkEvA~Rl~A~pgsk~yg~LSv~~  151 (285)
T 1zq9_A           81 VLVGDVLKTDLPF------FDTCVANLPYQISSPFVFKLLLHRP---FFRCAILMFQREFALRLVAKPGDKLYCRLSINT  151 (285)
T ss_dssp             EEESCTTTSCCCC------CSEEEEECCGGGHHHHHHHHHHCSS---CCSEEEEEEEHHHHHHHHCCTTCTTCSHHHHHH
T ss_pred             EECHHHHHCHHHH------HHHEECCCHHHHHHHHHHHHHHCCC---CCCEEEEEECHHHHHHHHHCCCCCCCCCHHHHH
T ss_conf             5406654110554------4321102216568899999875176---421245762189999997047997324103331


Q ss_pred             CCCCCEEEECCCCCCEECCCCCCCEEEEEECCCCCCCCCCHHHHHHHHHHHHCCCCHHHHHHHHHCCC------------
Q ss_conf             01332012000110000105787578873012588553476789999999972731389998763181------------
Q gi|254780398|r  179 GWRTKATMMFDISPHVFFPSPKVTSTVIHFIPHLNPIPCCLESLKKITQEAFGKRRKTLRQSLKRLGG------------  246 (284)
Q Consensus       179 q~~~~v~~~~~V~~~~F~P~PkVdS~vi~l~pk~~~~~~~~~~~~~~~~~~F~~RRK~l~~~L~~~~~------------  246 (284)
                      |++|+++++++|||++|+|+|||||+||+++|++.+...+.+.|+++++.+|++|||+|+|+|++...            
T Consensus       152 q~~~~v~~~~~V~~~~F~P~PkVdSavv~l~pk~~~~~~~~~~~~~~v~~~F~~RRK~l~n~Lk~~~~~~~l~~~~~~~~  231 (285)
T 1zq9_A          152 QLLARVDHLMKVGKNNFRPPPKVESSVVRIEPKNPPPPINFQEWDGLVRITFVRKNKTLSAAFKSSAVQQLLEKNYRIHC  231 (285)
T ss_dssp             HHHEEEEEEEEECGGGEESCCSSCEEEEEEEECSSCCSCCHHHHHHHHHHHHTTTTSBHHHHTTSHHHHHHHHHHHHHHH
T ss_pred             HHHHHEEEEEEECHHHCCCCCCCCEEEEEEECCCCCCCCHHHHHHHHHHHHHCCHHHHHHHHHHHCCHHHHHHHHHHHHC
T ss_conf             01101115678467984138873179999855788862219999999999868406448988713020778877478755


Q ss_pred             -----------------HHHHHHCCCCCCCCHHCCCHHHHHHHHHHHHHC
Q ss_conf             -----------------789997877746571208999999999998636
Q gi|254780398|r  247 -----------------ENLLHQAGIETNLRAENLSIEDFCRITNILTDN  279 (284)
Q Consensus       247 -----------------~~~l~~~~i~~~~R~e~Ls~~~~~~L~~~l~~~  279 (284)
                                       ..+++.+|++ +.|||+||++||++|++.|.+.
T Consensus       232 ~i~~~~rpe~l~~~~~i~~~l~~~g~~-~~R~E~Ls~~~f~~L~~~l~~~  280 (285)
T 1zq9_A          232 SVHNIIIPEDFSIADKIQQILTSTGFS-DKRARSMDIDDFIRLLHGFNAE  280 (285)
T ss_dssp             HHHTCCCCTTCCHHHHHHHHHHHHTCT-TCBGGGCCHHHHHHHHHHHHTT
T ss_pred             CCCCCCCCCCCCHHHHHHHHHHHCCCC-CCCHHHCCHHHHHHHHHHHHHC
T ss_conf             888544732056999999999856997-7880449999999999999975


No 4  
>1qyr_A KSGA, high level kasugamycin resistance protein, S-; adenosine dimethyltransferase, rRNA modification, transferase, translation; 2.10A {Escherichia coli} SCOP: c.66.1.24
Probab=100.00  E-value=0  Score=516.07  Aligned_cols=248  Identities=35%  Similarity=0.579  Sum_probs=231.3

Q ss_pred             CCCCCCHHHHHHHHHHCCCCCCCEEEEECCCCCHHHHHHHHCCCCEEEEECCCCCCHHHHHHHHHHHHCCCCCCHHHHCC
Q ss_conf             41123989999999971989998799975898823467750235259984255430368878753220012200000001
Q gi|254780398|r   27 QNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALK  106 (284)
Q Consensus        27 QnFL~d~~i~~~iv~~~~~~~~~~VlEIGpG~G~LT~~Ll~~~~~~v~aiEiD~~~~~~l~~~~~~~~~~~~ii~~Dal~  106 (284)
                      ||||+|++++++||+.+++.++|.|||||||+|+||..|++++ ++|+|||+|+++++.|++.+...+ +++++++|+|+
T Consensus         1 QnFL~d~~i~~~iv~~~~~~~~d~vlEIGpG~G~LT~~Ll~~~-~~v~avE~D~~l~~~L~~~~~~~~-~~~ii~~D~l~   78 (252)
T 1qyr_A            1 QNFLNDQFVIDSIVSAINPQKGQAMVEIGPGLAALTEPVGERL-DQLTVIELDRDLAARLQTHPFLGP-KLTIYQQDAMT   78 (252)
T ss_dssp             CCEECCHHHHHHHHHHHCCCTTCCEEEECCTTTTTHHHHHTTC-SCEEEECCCHHHHHHHHTCTTTGG-GEEEECSCGGG
T ss_pred             CCCCCCHHHHHHHHHHCCCCCCCEEEEECCCCCHHHHHHHHCC-CCEEEEEECCHHHHHHHHHHHCCC-CEEEEECHHHH
T ss_conf             9852788999999984489997969998998729999998168-976999962128899998763177-62565011455


Q ss_pred             CCHHHHCC-CCCCEEEEECCCHHHHHHHHHHHHHHHCCCCCCCHHHHEEEHHHHHHHHHCCCHHHHHHHHHHHCCCCCEE
Q ss_conf             43155213-32220112023224678899999852010000001102033447887530123123323454320133201
Q gi|254780398|r  107 VDFEKFFN-ISSPIRIIANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKAT  185 (284)
Q Consensus       107 ~d~~~~~~-~~~~~~vvgNLPYnIss~Il~~ll~~~~~~~~~~~~vlmvQkEvA~Rl~a~pg~k~Yg~LSv~~q~~~~v~  185 (284)
                      +|+.++.. .+.|++|||||||||||+|+++++....   .++.|++|+|||||+||+|+||+++||+|||++|++|+++
T Consensus        79 ~~~~~~~~~~~~~~~vvgNLPY~Ist~il~~ll~~~~---~~~~~v~mvQkEvA~Ri~A~~gsk~yg~lsv~~q~~~~~~  155 (252)
T 1qyr_A           79 FNFGELAEKMGQPLRVFGNLPYNISTPLMFHLFSYTD---AIADMHFMLQKEVVNRLVAGPNSKAYGRLSVMAQYYCNVI  155 (252)
T ss_dssp             CCHHHHHHHHTSCEEEEEECCTTTHHHHHHHHHTTGG---GEEEEEEEEEHHHHHHHHCCTTSTTCSHHHHHHHHHEEEE
T ss_pred             HCHHHHHCCCCCCEEEEECCHHHHHHHHHHHHHCCCC---CEEEEEEEEEHHHHHHHHCCCCCHHHHHHHHHHHHCCCEE
T ss_conf             2321221036897599946628899999997511366---3000247776899888834799835536777533111202


Q ss_pred             EECCCCCCEECCCCCCCEEEEEECCCCCCC--CCCHHHHHHHHHHHHCCCCHHHHHHHHHCCCHHHHHHCCCCCCCCHHC
Q ss_conf             200011000010578757887301258855--347678999999997273138999876318178999787774657120
Q gi|254780398|r  186 MMFDISPHVFFPSPKVTSTVIHFIPHLNPI--PCCLESLKKITQEAFGKRRKTLRQSLKRLGGENLLHQAGIETNLRAEN  263 (284)
Q Consensus       186 ~~~~V~~~~F~P~PkVdS~vi~l~pk~~~~--~~~~~~~~~~~~~~F~~RRK~l~~~L~~~~~~~~l~~~~i~~~~R~e~  263 (284)
                      ++++|||++|+|+|||||++|+++|++++.  ..+.+.++.+++.+|++|||+|+|+|+.....++++++|++++.|||+
T Consensus       156 ~~~~V~~~~F~P~PkVdS~vv~l~~~~~~~~~~~~~~~~~~~v~~~F~~rRK~l~n~L~~~~~~~~l~~~~i~~~~R~e~  235 (252)
T 1qyr_A          156 PVLEVPPSAFTPPPKVDSAVVRLVPHATMPHPVKDVRVLSRITTEAFNQRRKTIRNSLGNLFSVEVLTGMGIDPAMRAEN  235 (252)
T ss_dssp             EEEEECGGGEESCCSSCEEEEEEEECSSCSSCCSCHHHHHHHHHHHHHTTTSBHHHHTTTTCCHHHHHHTTCCTTSBGGG
T ss_pred             EEEEECHHHCCCCCCCEEEEEEEEECCCCCCCHHHHHHHHHHHHHHHHCCHHHHHHHHHHHCCHHHHHHCCCCCCCCHHH
T ss_conf             52388546546599840677998855878752068999999999998545288999874044199999779882339333


Q ss_pred             CCHHHHHHHHHHHHHC
Q ss_conf             8999999999998636
Q gi|254780398|r  264 LSIEDFCRITNILTDN  279 (284)
Q Consensus       264 Ls~~~~~~L~~~l~~~  279 (284)
                      |+++||++|++.+.++
T Consensus       236 Ls~~~~~~L~~~l~~~  251 (252)
T 1qyr_A          236 ISVAQYCQMANYLAEN  251 (252)
T ss_dssp             SCHHHHHHHHHHHHHH
T ss_pred             CCHHHHHHHHHHHHHC
T ss_conf             9999999999999840


No 5  
>2h1r_A Dimethyladenosine transferase, putative; SGC toronto dimethyladenosine transferase, structural genomics, structural genomics consortium; 1.89A {Plasmodium falciparum}
Probab=100.00  E-value=0  Score=510.30  Aligned_cols=253  Identities=30%  Similarity=0.451  Sum_probs=226.8

Q ss_pred             HCCCCCCCCCCCCCCCCHHHHHHHHHHCCCCCCCEEEEECCCCCHHHHHHHHCCCCEEEEECCCCCCHHHHHHHHHHH-H
Q ss_conf             818984336584112398999999997198999879997589882346775023525998425543036887875322-0
Q gi|254780398|r   16 HYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQH-P   94 (284)
Q Consensus        16 ~~~~~p~k~lGQnFL~d~~i~~~iv~~~~~~~~~~VlEIGpG~G~LT~~Ll~~~~~~v~aiEiD~~~~~~l~~~~~~~-~   94 (284)
                      +.+...++.||||||+|++++++||+.+++.++|.|||||||+|+||..|++++ ++|+|||+|+++++.|++.+... .
T Consensus        11 ~~~~~~~~~LGQnFL~D~~i~~kIv~~~~~~~~d~VLEIGPG~G~LT~~Ll~~~-~~v~aiE~D~~l~~~L~e~~~~~~~   89 (299)
T 2h1r_A           11 SSGRENLYFQGQHLLKNPGILDKIIYAAKIKSSDIVLEIGCGTGNLTVKLLPLA-KKVITIDIDSRMISEVKKRCLYEGY   89 (299)
T ss_dssp             ------------CEECCHHHHHHHHHHHCCCTTCEEEEECCTTSTTHHHHTTTS-SEEEEECSCHHHHHHHHHHHHHTTC
T ss_pred             CCCCCCCCCCCCCCCCCHHHHHHHHHHCCCCCCCEEEEECCCHHHHHHHHHHCC-CEEEEEECCCHHHHHHHHHHHHCCC
T ss_conf             556788887777437898999999984589998989996897279999998239-9079997770899999975432133


Q ss_pred             CCCCCCHHHHCCCCHHHHCCCCCCEEEEECCCHHHHHHHHHHHHHHHCCCCCCCHHHHEEEHHHHHHHHHCCCHHHHHHH
Q ss_conf             01220000000143155213322201120232246788999998520100000011020334478875301231233234
Q gi|254780398|r   95 NRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRL  174 (284)
Q Consensus        95 ~~~~ii~~Dal~~d~~~~~~~~~~~~vvgNLPYnIss~Il~~ll~~~~~~~~~~~~vlmvQkEvA~Rl~a~pg~k~Yg~L  174 (284)
                      .+++++++|++++++++      +++|||||||||||+|+++++...   +.+..|++|+|||||+||+|+||+|+||+|
T Consensus        90 ~~~~~i~~D~~~~~~~~------~~~vVgNLPY~ISs~ii~k~l~~~---~~~~~~vlmvQkEvA~Rl~A~pg~k~y~~L  160 (299)
T 2h1r_A           90 NNLEVYEGDAIKTVFPK------FDVCTANIPYKISSPLIFKLISHR---PLFKCAVLMFQKEFAERMLANVGDSNYSRL  160 (299)
T ss_dssp             CCEEC----CCSSCCCC------CSEEEEECCGGGHHHHHHHHHHCS---SCCSEEEEEEEHHHHHHHTCCTTSTTCCHH
T ss_pred             CCCCCCCCCCCHHHCCC------CCEEECCCCHHHHHHHHHHHHHCC---CCCCCEEEEEEHHHHHHHHCCCCCCHHHHH
T ss_conf             33332034420000245------434614788478999999976407---765544788609999987606894035577


Q ss_pred             HHHHCCCCCEEEECCCCCCEECCCCCCCEEEEEECCCCCCCCCCHHHHHHHHHHHHCCCCHHHHHHHHHCC---------
Q ss_conf             54320133201200011000010578757887301258855347678999999997273138999876318---------
Q gi|254780398|r  175 SVLTGWRTKATMMFDISPHVFFPSPKVTSTVIHFIPHLNPIPCCLESLKKITQEAFGKRRKTLRQSLKRLG---------  245 (284)
Q Consensus       175 Sv~~q~~~~v~~~~~V~~~~F~P~PkVdS~vi~l~pk~~~~~~~~~~~~~~~~~~F~~RRK~l~~~L~~~~---------  245 (284)
                      ||++|++|+++.+++|||++|+|+|||||+||+|+|++.+...+.+.|+.+++.+|++|||+|+|+|++..         
T Consensus       161 Sv~~q~~~~v~~~~~V~~~~F~P~PkVdSavi~l~pk~~~~~~~~~~~~~~vr~~F~~RRK~l~n~Lkk~~~~~~l~~~~  240 (299)
T 2h1r_A          161 TINVKLFCKVTKVCNVNRSSFNPPPKVDSVIVKLIPKESSFLTNFDEWDNLLRICFSRKRKTLHAIFKRNAVLNMLEHNY  240 (299)
T ss_dssp             HHHHHHHEEEEEEEEECGGGEESCCSSCEEEEEEEECGGGGGSCHHHHHHHHHHHHTTTTSBHHHHHTSHHHHHHHHHHH
T ss_pred             HHHHHHHHHHCEEEECCHHHCCCCCCCCEEEEEEECCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf             99998886414311317576738996136899973477777789999999999997441448898863400356667767


Q ss_pred             -------------------CHHHHHHCCCCCCCCHHCCCHHHHHHHHHHHHHC
Q ss_conf             -------------------1789997877746571208999999999998636
Q gi|254780398|r  246 -------------------GENLLHQAGIETNLRAENLSIEDFCRITNILTDN  279 (284)
Q Consensus       246 -------------------~~~~l~~~~i~~~~R~e~Ls~~~~~~L~~~l~~~  279 (284)
                                         ..++++.++++ ++|||+|+++||++|++.+++.
T Consensus       241 ~~~~~~~~~~~~~~~~~~~~~~~L~~~~i~-~~R~e~Ls~edf~~L~~~~~~~  292 (299)
T 2h1r_A          241 KNWCTLNKQVPVNFPFKKYCLDVLEHLDMC-EKRSINLDENDFLKLLLEFNKK  292 (299)
T ss_dssp             HHHHHHTTCCCCSSCHHHHHHHHHHHTTCT-TCBGGGCCHHHHHHHHHHHHHT
T ss_pred             HHHHHHCCCCCCCCCHHHHHHHHHHHCCCC-CCCCHHCCHHHHHHHHHHHHHC
T ss_conf             777531201455533578999999856975-4780339999999999999975


No 6  
>3ftd_A Dimethyladenosine transferase; KSGA, rossmann-like fold, RNA methyltransferase, mtase, antibiotic resistance, methyltransferase; 1.44A {Aquifex aeolicus VF5} PDB: 3ftc_A 3fte_A 3ftf_A*
Probab=100.00  E-value=0  Score=511.87  Aligned_cols=246  Identities=35%  Similarity=0.559  Sum_probs=226.5

Q ss_pred             CCCCCCCCCCCCCCCHHHHHHHHHHCCCCCCCEEEEECCCCCHHHHHHHHCCCCEEEEECCCCCCHHHHHHHHHHHHCCC
Q ss_conf             89843365841123989999999971989998799975898823467750235259984255430368878753220012
Q gi|254780398|r   18 KIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQHPNRL   97 (284)
Q Consensus        18 ~~~p~k~lGQnFL~d~~i~~~iv~~~~~~~~~~VlEIGpG~G~LT~~Ll~~~~~~v~aiEiD~~~~~~l~~~~~~~~~~~   97 (284)
                      .+||||+||||||+|++++++||+.+++.++|.|||||||+|+||+.|+++++++|+|+|+|++++..|++.+.   .++
T Consensus         2 mir~kk~lGQnFL~d~~~~~~iv~~~~~~~~d~VlEIGpG~G~LT~~Ll~~~~~~v~aiE~D~~l~~~l~~~~~---~~~   78 (249)
T 3ftd_A            2 MVRLKKSFGQHLLVSEGVLKKIAEELNIEEGNTVVEVGGGTGNLTKVLLQHPLKKLYVIELDREMVENLKSIGD---ERL   78 (249)
T ss_dssp             ------CCCSSCEECHHHHHHHHHHTTCCTTCEEEEEESCHHHHHHHHTTSCCSEEEEECCCHHHHHHHTTSCC---TTE
T ss_pred             CCCCCCCCCCCCCCCHHHHHHHHHHCCCCCCCEEEEECCCCCHHHHHHHHHCCCEEEEEEECCCCHHHHHHHCC---CCE
T ss_conf             87687778845018989999999954899989499969987698999997045707899986620013222204---432


Q ss_pred             CCCHHHHCCCCHHHHCCCCCCEEEEECCCHHHHHHHHHHHHHHHCCCCCCCHHHHEEEHHHHHHHHHCCCHHHHHHHHHH
Q ss_conf             20000000143155213322201120232246788999998520100000011020334478875301231233234543
Q gi|254780398|r   98 EIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVL  177 (284)
Q Consensus        98 ~ii~~Dal~~d~~~~~~~~~~~~vvgNLPYnIss~Il~~ll~~~~~~~~~~~~vlmvQkEvA~Rl~a~pg~k~Yg~LSv~  177 (284)
                      +++++||+++|+..+   +.+++|||||||||||+|+.+++....   .+..+++|+|||||+|++|.+   +||+||++
T Consensus        79 ~ii~~D~l~~~~~~~---~~~~~vVgNLPY~Iss~ii~~ll~~~~---~~~~~vlmvQkEvA~Rl~~~~---~y~~lSv~  149 (249)
T 3ftd_A           79 EVINEDASKFPFCSL---GKELKVVGNLPYNVASLIIENTVYNKD---CVPLAVFMVQKEVAEKLQGKK---DTGWLSVF  149 (249)
T ss_dssp             EEECSCTTTCCGGGS---CSSEEEEEECCTTTHHHHHHHHHHTGG---GCSEEEEEEEHHHHHHHHTSS---CCCHHHHH
T ss_pred             EEEECCHHHCCHHHC---CCCCEEEECCCHHHHHHHHHHHHHCCC---CCCEEEEEEEHHHHHHHCCCC---CCCHHHHH
T ss_conf             899634011786462---976258614421041799999873145---530057767599998731788---98734699


Q ss_pred             HCCCCCEEEECCCCCCEECCCCCCCEEEEEECCCCCCCCCCHHHHHHHHHHHHCCCCHHHHHHHHHCCCHHHHHHCCCCC
Q ss_conf             20133201200011000010578757887301258855347678999999997273138999876318178999787774
Q gi|254780398|r  178 TGWRTKATMMFDISPHVFFPSPKVTSTVIHFIPHLNPIPCCLESLKKITQEAFGKRRKTLRQSLKRLGGENLLHQAGIET  257 (284)
Q Consensus       178 ~q~~~~v~~~~~V~~~~F~P~PkVdS~vi~l~pk~~~~~~~~~~~~~~~~~~F~~RRK~l~~~L~~~~~~~~l~~~~i~~  257 (284)
                      +|++|+++++++|||++|+|+|||||++|+++|++.....+.+.|+.+++.+|++|||+|+|+|.    +.+++++|+++
T Consensus       150 ~q~~~~~~~~~~V~~~~F~P~PkVdS~vv~l~~~~~~~~~~~~~~~~~v~~~F~~rRK~l~~~l~----~~~l~~~~i~~  225 (249)
T 3ftd_A          150 VRTFYDVNYVMTVPPRFFVPPPKVQSAVIKLVKNEKFPVKDLKNYKKFLTKIFQNRRKVLRKKIP----EELLKEAGINP  225 (249)
T ss_dssp             HHHHEEEEEEEEECGGGEESCCSSCEEEEEEEECCCSCCCCHHHHHHHHHHHHSSTTSCGGGTSC----HHHHHHTTCCT
T ss_pred             HHHHHHEEECCCCCHHHCCCCCCCCEEEEEEEECCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHCCCCC
T ss_conf             98664310014566554689996235889987579888531789999999998750455658789----99999879598


Q ss_pred             CCCHHCCCHHHHHHHHHHHHHC
Q ss_conf             6571208999999999998636
Q gi|254780398|r  258 NLRAENLSIEDFCRITNILTDN  279 (284)
Q Consensus       258 ~~R~e~Ls~~~~~~L~~~l~~~  279 (284)
                      +.|||+|+++||++|++.+.++
T Consensus       226 ~~R~e~Ls~~~~~~L~~~l~~~  247 (249)
T 3ftd_A          226 DARVEQLSLEDFFKLYRLIEDS  247 (249)
T ss_dssp             TCCGGGCCHHHHHHHHHHHHCC
T ss_pred             CCCHHHCCHHHHHHHHHHHHHC
T ss_conf             8894779999999999999971


No 7  
>1qam_A ERMC' methyltransferase; rRNA methyltransferase ERMC', cofactor analogs; 2.20A {Bacillus subtilis} SCOP: c.66.1.24 PDB: 1qan_A* 1qao_A* 1qaq_A* 2erc_A
Probab=100.00  E-value=0  Score=474.77  Aligned_cols=238  Identities=22%  Similarity=0.314  Sum_probs=212.6

Q ss_pred             CCCCCCCCCCCCCHHHHHHHHHHCCCCCCCEEEEECCCCCHHHHHHHHCCCCEEEEECCCCCCHHHHHHHHHHHHCCCCC
Q ss_conf             84336584112398999999997198999879997589882346775023525998425543036887875322001220
Q gi|254780398|r   20 IPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQHPNRLEI   99 (284)
Q Consensus        20 ~p~k~lGQnFL~d~~i~~~iv~~~~~~~~~~VlEIGpG~G~LT~~Ll~~~~~~v~aiEiD~~~~~~l~~~~~~~~~~~~i   99 (284)
                      +++|++|||||+|++++++||+.+++.++|.|||||||+|+||..|++++ ++|+|||+|+++++.|++++...+ ++++
T Consensus         3 ~~~~k~GQnFL~d~~i~~~Iv~~~~~~~~d~VlEIGpG~G~LT~~L~~~~-~~v~avEiD~~l~~~L~~~~~~~~-n~~i   80 (244)
T 1qam_A            3 EKNIKHSQNFITSKHNIDKIMTNIRLNEHDNIFEIGSGKGHFTLELVQRC-NFVTAIEIDHKLCKTTENKLVDHD-NFQV   80 (244)
T ss_dssp             -------CCBCCCHHHHHHHHTTCCCCTTCEEEEECCTTSHHHHHHHHHS-SEEEEECSCHHHHHHHHHHTTTCC-SEEE
T ss_pred             CCCCCCCCCCCCCHHHHHHHHHHCCCCCCCEEEEECCCCCHHHHHHHHCC-CCEEEEEECHHHHHHHHHHHCCCC-CEEE
T ss_conf             99888888414799999999995678999979997388719999998555-830699853017799997414477-6577


Q ss_pred             CHHHHCCCCHHHHCCCCCCEEEEECCCHHHHHHHHHHHHHHHCCCCCCCHHHHEEEHHHHHHHHHCCCHHHHHHHHHHHC
Q ss_conf             00000014315521332220112023224678899999852010000001102033447887530123123323454320
Q gi|254780398|r  100 IQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTG  179 (284)
Q Consensus       100 i~~Dal~~d~~~~~~~~~~~~vvgNLPYnIss~Il~~ll~~~~~~~~~~~~vlmvQkEvA~Rl~a~pg~k~Yg~LSv~~q  179 (284)
                      ++||||++|+++    ..+++|||||||||||+|+++++...    .+..+++|+|||||+||+|+||     +||+++|
T Consensus        81 i~~D~l~~~~~~----~~~~~vv~NLPYnIss~Il~~ll~~~----~~~~~~~mvQkEvA~Rl~a~~g-----~lsv~~~  147 (244)
T 1qam_A           81 LNKDILQFKFPK----NQSYKIFGNIPYNISTDIIRKIVFDS----IADEIYLIVEYGFAKRLLNTKR-----SLALFLM  147 (244)
T ss_dssp             ECCCGGGCCCCS----SCCCEEEEECCGGGHHHHHHHHHHSC----CCSEEEEEEEHHHHHHHTCTTS-----HHHHHHT
T ss_pred             EECHHHCCCCCC----CCCEEEEEECHHHHHHHHHHHHCCCC----CCCEEEEEEEEHHHHHHHCCCC-----CCHHHHH
T ss_conf             300122256544----67547997430552389998750244----3000353310012331230257-----5235532


Q ss_pred             CCCCEEEECCCCCCEECCCCCCCEEEEEECCCCCCCC-CCHHHHHHHHHHHHCCCCHHHHHHHHHCCCHHHHHHCCCCCC
Q ss_conf             1332012000110000105787578873012588553-476789999999972731389998763181789997877746
Q gi|254780398|r  180 WRTKATMMFDISPHVFFPSPKVTSTVIHFIPHLNPIP-CCLESLKKITQEAFGKRRKTLRQSLKRLGGENLLHQAGIETN  258 (284)
Q Consensus       180 ~~~~v~~~~~V~~~~F~P~PkVdS~vi~l~pk~~~~~-~~~~~~~~~~~~~F~~RRK~l~~~L~~~~~~~~l~~~~i~~~  258 (284)
                      ++|+++++++|||+||+|+|||||+||+|+|++.+.. .+.+.|..+++.+|++|||++.+...   ..++++.+|++  
T Consensus       148 ~~~~~~~~~~V~~~~F~P~PkVdS~vi~l~~k~~~~~~~~~~~~~~~~~~~F~~rrK~l~~~~~---~~~~l~~~gi~--  222 (244)
T 1qam_A          148 AEVDISILSMVPREYFHPKPKVNSSLIRLNRKKSRISHKDKQKYNYFVMKWVNKEYKKIFTKNQ---FNNSLKHAGID--  222 (244)
T ss_dssp             TTEEEEEEEEECGGGSBSCCSSCEEEEEEEECCCSSCGGGHHHHHHHHHHHHTTCGGGTCCHHH---HHHHHHHHTCS--
T ss_pred             HHHHCCCCCCCCHHHCCCCCCCEEEEEEEEECCCCCCCCCHHHHHHHHHHHHHHCCCCCCCHHH---HHHHHHHCCCC--
T ss_conf             3223223455680205689983389999997898887527999999999998414460357788---99999984999--


Q ss_pred             CCHHCCCHHHHHHHHHHHHH
Q ss_conf             57120899999999999863
Q gi|254780398|r  259 LRAENLSIEDFCRITNILTD  278 (284)
Q Consensus       259 ~R~e~Ls~~~~~~L~~~l~~  278 (284)
                       |||+||++||++|++.++.
T Consensus       223 -~~e~Ls~e~~~~L~~~~~~  241 (244)
T 1qam_A          223 -DLNNISFEQFLSLFNSYKL  241 (244)
T ss_dssp             -CTTSCCHHHHHHHHHHHHH
T ss_pred             -CHHHCCHHHHHHHHHHHHH
T ss_conf             -8132999999999999986


No 8  
>1i4w_A Mitochondrial replication protein MTF1; mitochondrial transcription factor, transcription initiation; 2.60A {Saccharomyces cerevisiae} SCOP: c.66.1.24
Probab=100.00  E-value=0  Score=442.86  Aligned_cols=269  Identities=15%  Similarity=0.233  Sum_probs=225.7

Q ss_pred             CCCCCCCHHHHHHHHHCCCCCCCCCCCCCCCCHHHHHHHHHHCCCC------CCCEEEEECCCCCHHHHHHHHC-CCCEE
Q ss_conf             9778884479999998189843365841123989999999971989------9987999758988234677502-35259
Q gi|254780398|r    1 MTMNNKSHSLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSL------DGITVIEIGAGPGNLTQMLLTL-GARKV   73 (284)
Q Consensus         1 ~~~~~~~~~i~~ll~~~~~~p~k~lGQnFL~d~~i~~~iv~~~~~~------~~~~VlEIGpG~G~LT~~Ll~~-~~~~v   73 (284)
                      ||-..+-.+++++     .+++|++|||||+|++++++|++.+++.      .+.+|||||||+|+||+.|+++ +++++
T Consensus        11 ~~~~~~lp~~~~~-----~k~k~~~Gq~fL~d~~l~~kIv~~l~l~~~~~~~~~~~IlEIgPG~G~lT~~Ll~~~~pk~~   85 (353)
T 1i4w_A           11 MASSVPIPGIKDI-----SKLKFFYGFKYLWNPTVYNKIFDKLDLTKTYKHPEELKVLDLYPGVGIQSAIFYNKYCPRQY   85 (353)
T ss_dssp             -----CCCCCCTT-----CSSCCGGGCCCBCCHHHHHHHHHHHCGGGTCCCTTTCEEEEESCTTCHHHHHHHHHHCCSEE
T ss_pred             HHCCCCCCCHHHH-----HHHHHHHCHHHCCCHHHHHHHHHHHCCCCCCCCCCCCEEEEECCCCCHHHHHHHHHCCCCEE
T ss_conf             5416889981777-----77887635444389999999998736763335778996999899988999999852588769


Q ss_pred             EEECCCCCCHHHHHHHHHHHHCCCCCCHHHHCCCCH-HHHC--------------CCCCCEEEEECCCHHHHHHHHHHHH
Q ss_conf             984255430368878753220012200000001431-5521--------------3322201120232246788999998
Q gi|254780398|r   74 IVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDF-EKFF--------------NISSPIRIIANLPYNIGTRLLFNWI  138 (284)
Q Consensus        74 ~aiEiD~~~~~~l~~~~~~~~~~~~ii~~Dal~~d~-~~~~--------------~~~~~~~vvgNLPYnIss~Il~~ll  138 (284)
                      ++||+|+++++.|++++..  .+++++++|+++++. .++.              ..+.++.|||||||||||+|+++|+
T Consensus        86 i~iE~D~~~~~~L~~~~~~--~~~~ii~~D~l~~~~~~~l~~~~~~~~p~~~~~~~~~~~l~vvaNLPynis~~ll~k~l  163 (353)
T 1i4w_A           86 SLLEKRSSLYKFLNAKFEG--SPLQILKRDPYDWSTYSNLIDEERIFVPEVQSSDHINDKFLTVANVTGEGSEGLIMQWL  163 (353)
T ss_dssp             EEECCCHHHHHHHHHHTTT--SSCEEECSCTTCHHHHHHHTTTTCSSCCCCCCTTSEEEEEEEEEECCSTTHHHHHHHHH
T ss_pred             EEEECCHHHHHHHHHHHCC--CCCEEEECCHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCEEEEEECCCHHHHHHHHHHH
T ss_conf             9997778899999987145--88479946456532156554201234665432113688479999488443699999999


Q ss_pred             HHHC-----CCCCCCHHHHEEEHHHHHHHHHCCCHHHHHHHHHHHCCCCCEEEE---------------------CCCCC
Q ss_conf             5201-----000000110203344788753012312332345432013320120---------------------00110
Q gi|254780398|r  139 SADT-----WPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMM---------------------FDISP  192 (284)
Q Consensus       139 ~~~~-----~~~~~~~~vlmvQkEvA~Rl~a~pg~k~Yg~LSv~~q~~~~v~~~---------------------~~V~~  192 (284)
                      ....     +..+..+|++|+|+|||+||+|+||++.||||||++|++|+++++                     +.||+
T Consensus       164 ~~~~~~~~l~~~G~v~m~lm~QkEvAeRi~A~~g~k~y~rlSV~~q~~~dv~~l~~~~~~~~~~f~~~~~~~~~~~~v~~  243 (353)
T 1i4w_A          164 SCIGNKNWLYRFGKVKMLLWMPSTTARKLLARPGMHSRSKCSVVREAFTDTKLIAISDANELKGFDSQCIEEWDPILFSA  243 (353)
T ss_dssp             HHHHHTCGGGGGSEEEEEEEEEHHHHHHHHCCTTSTTCCHHHHHHHHHEEEEEEEESCGGGGGGSCHHHHHHHCCEECCG
T ss_pred             HHCCCCCCCCCCCCEEEEEEECHHHHHHHHCCCCCCCHHHHHHHHHHHHCEEEEECCCCCCCCCCCCCCCCCCCCCCCCC
T ss_conf             96513433311364247888529999998447897422199999998731234222553212334544322457766795


Q ss_pred             CEECCCCCCCEEEEEECCCCCCCCCCHHHHHHHHHHHHCCCCHHHHHHHHHCCC--HHHHHHCCCC---CCCCHHCCCHH
Q ss_conf             000105787578873012588553476789999999972731389998763181--7899978777---46571208999
Q gi|254780398|r  193 HVFFPSPKVTSTVIHFIPHLNPIPCCLESLKKITQEAFGKRRKTLRQSLKRLGG--ENLLHQAGIE---TNLRAENLSIE  267 (284)
Q Consensus       193 ~~F~P~PkVdS~vi~l~pk~~~~~~~~~~~~~~~~~~F~~RRK~l~~~L~~~~~--~~~l~~~~i~---~~~R~e~Ls~~  267 (284)
                      ++|+|+|+|+|+||+++|+..+.  +.+.|+.+++.+|.+|||+|+++|+...+  .+.+.....+   +++||++||++
T Consensus       244 ~~f~P~pkv~savv~~~P~~~~~--d~~~~~~vvr~~F~~RRK~l~~~L~~l~pga~~~l~~~~~~~~~l~kRpe~Lt~~  321 (353)
T 1i4w_A          244 AEIWPTKGKPIALVEMDPIDFDF--DVDNWDYVTRHLMILKRTPLNTVMDSLGHGGQQYFNSRITDKDLLKKCPIDLTND  321 (353)
T ss_dssp             GGBSSCSCCCEEEEEEEECCCCS--CHHHHHHHHHHHHTTTTSCTTTGGGGSSTTHHHHHTTTCCCCTTTSSCGGGCCHH
T ss_pred             CCCCCCCCCCEEEEEEECCCCCC--CHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHCCCCCCHHCCCCCCCHH
T ss_conf             44567999857999965589986--9899999999999871788999998767885899987467843000485679999


Q ss_pred             HHHHHHHHHHH
Q ss_conf             99999999863
Q gi|254780398|r  268 DFCRITNILTD  278 (284)
Q Consensus       268 ~~~~L~~~l~~  278 (284)
                      ||+.|++.+.+
T Consensus       322 ef~~La~~f~~  332 (353)
T 1i4w_A          322 EFIYLTKLFME  332 (353)
T ss_dssp             HHHHHHHHHHT
T ss_pred             HHHHHHHHHHH
T ss_conf             99999999981


No 9  
>1yub_A Ermam, rRNA methyltransferase; MLS antibiotics; NMR {Streptococcus pneumoniae} SCOP: c.66.1.24
Probab=100.00  E-value=0  Score=444.92  Aligned_cols=239  Identities=21%  Similarity=0.320  Sum_probs=210.1

Q ss_pred             CCCCCCCCCCCCHHHHHHHHHHCCCCCCCEEEEECCCCCHHHHHHHHCCCCEEEEECCCCCCHHHHHHHHHHHHCCCCCC
Q ss_conf             43365841123989999999971989998799975898823467750235259984255430368878753220012200
Q gi|254780398|r   21 PKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQHPNRLEII  100 (284)
Q Consensus        21 p~k~lGQnFL~d~~i~~~iv~~~~~~~~~~VlEIGpG~G~LT~~Ll~~~~~~v~aiEiD~~~~~~l~~~~~~~~~~~~ii  100 (284)
                      -+++||||||+|++++++|++.+++.++|.|||||||+|+||..|+++ +++|+|||+|+++++.|++.+...+ +++++
T Consensus         3 ~~~k~GQnFL~d~~i~~~Iv~~~~~~~~d~VlEIGpG~G~LT~~L~~~-~~~v~aiE~D~~l~~~l~~~~~~~~-n~~ii   80 (245)
T 1yub_A            3 KNIKYSQNFLTSEKVLNQIIKQLNLKETDTVYEIGTGKGHLTTKLAKI-SKQVTSIELDSHLFNLSSEKLKLNT-RVTLI   80 (245)
T ss_dssp             CCCCSCCCBCCCTTTHHHHHHHCCCCSSEEEEECSCCCSSCSHHHHHH-SSEEEESSSSCSSSSSSSCTTTTCS-EEEEC
T ss_pred             CCCCCCCCCCCCHHHHHHHHHHCCCCCCCEEEEECCCHHHHHHHHHHC-CCCCEEECCCHHHHHHHHHHHHCCC-CCHHH
T ss_conf             998878714789899999999458999996899799735999999961-6500403404466898875541134-00022


Q ss_pred             HHHHCCCCHHHHCCCCCCEEEEECCCHHHHHHHHHHHHHHHCCCCCCCHHHHEEEHHHHHHHHHCCCHHHHHHHHHHHCC
Q ss_conf             00000143155213322201120232246788999998520100000011020334478875301231233234543201
Q gi|254780398|r  101 QDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGW  180 (284)
Q Consensus       101 ~~Dal~~d~~~~~~~~~~~~vvgNLPYnIss~Il~~ll~~~~~~~~~~~~vlmvQkEvA~Rl~a~pg~k~Yg~LSv~~q~  180 (284)
                      ++|++++|++.    ..+++|||||||||||+|+.+++...    .+..+++|+|||||+|+++     .||+|||++|+
T Consensus        81 ~~D~l~~~~~~----~~~~~vv~NLPY~Iss~il~~ll~~~----~~~~~~~m~QkEva~ri~~-----~yg~Lsv~~q~  147 (245)
T 1yub_A           81 HQDILQFQFPN----KQRYKIVGNIPYHLSTQIIKKVVFES----RASDIYLIVEEGFYKRTLD-----IHRTLGLLLHT  147 (245)
T ss_dssp             CSCCTTTTCCC----SSEEEEEEECCSSSCHHHHHHHHHHC----CCEEEEEEEESSHHHHHHC-----GGGSHHHHTTT
T ss_pred             HCCHHCCCCCC----CCCEEEEECCCHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHH-----CCCCCHHHHHH
T ss_conf             01100014445----78656871675787648999998721----2788899999999998752-----15460688762


Q ss_pred             CCCEEEECCCCCCEECCCCCCCEEEEEECCCCCCCC-CCHHHHHHHHHHHHCCCCHHHHHHHHHCCCHHHHHHCCCCCCC
Q ss_conf             332012000110000105787578873012588553-4767899999999727313899987631817899978777465
Q gi|254780398|r  181 RTKATMMFDISPHVFFPSPKVTSTVIHFIPHLNPIP-CCLESLKKITQEAFGKRRKTLRQSLKRLGGENLLHQAGIETNL  259 (284)
Q Consensus       181 ~~~v~~~~~V~~~~F~P~PkVdS~vi~l~pk~~~~~-~~~~~~~~~~~~~F~~RRK~l~~~L~~~~~~~~l~~~~i~~~~  259 (284)
                      +|+++.+++|||++|+|+|||||+||+++|+..+.. ...+.|+.+++.+|++|||++.+...   ..+.++.++++   
T Consensus       148 ~~~i~~~~~V~~~~F~P~PKVdSavi~i~~k~~~~~~~~~~~~~~~~~~~f~~~rk~l~~~~~---~~~~~~~~~~~---  221 (245)
T 1yub_A          148 QVSIQQLLKLPAECFHPKPKVNSVLIKLTRHTTDVPDKYWKLYTYFVSKWVNREYRQLFTKNQ---FHQAMKHAKVN---  221 (245)
T ss_dssp             TBCCCEEEEECCTTSBSSCCSCEEEEEECBCSCSSCHHHHHHHHHHHHHHHHTCHHHHCSSSH---HHHHHHHTTCS---
T ss_pred             CCEEEEEEEECHHHCCCCCCCEEEEEEEEECCCCCCHHHHHHHHHHHHHHHCCHHHHHHCHHH---HHHHHHHCCCC---
T ss_conf             201226007562315589984389999994799986368999999999998105777503348---99999876899---


Q ss_pred             CHHCCCHHHHHHHHHHHHHCC
Q ss_conf             712089999999999986364
Q gi|254780398|r  260 RAENLSIEDFCRITNILTDNQ  280 (284)
Q Consensus       260 R~e~Ls~~~~~~L~~~l~~~~  280 (284)
                      |+++|+++||++|++.+....
T Consensus       222 ~~~~ls~~e~~~l~~~~~~~~  242 (245)
T 1yub_A          222 NLSTITYEQVLSIFNSYLLFN  242 (245)
T ss_dssp             CTTSCCSHHHHHHHHHHHHHT
T ss_pred             CCCCCCHHHHHHHHHHHHHHC
T ss_conf             966389999999999999853


No 10 
>1wy7_A Hypothetical protein PH1948; seven-stranded beta sheet, methyltransferase fold, structural genomics; HET: SAH; 2.20A {Pyrococcus horikoshii OT3} SCOP: c.66.1.32
Probab=99.54  E-value=2e-14  Score=108.67  Aligned_cols=118  Identities=24%  Similarity=0.362  Sum_probs=94.0

Q ss_pred             CCHHHHHHHHHC-CC-CCCCCCCCCCCCCHHHHHHHHHH---CCCCCCCEEEEECCCCCHHHHHHHHCCCCEEEEECCCC
Q ss_conf             844799999981-89-84336584112398999999997---19899987999758988234677502352599842554
Q gi|254780398|r    6 KSHSLKTILSHY-KI-IPKKYMGQNFLLDLNILKKIAES---SGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQ   80 (284)
Q Consensus         6 ~~~~i~~ll~~~-~~-~p~k~lGQnFL~d~~i~~~iv~~---~~~~~~~~VlEIGpG~G~LT~~Ll~~~~~~v~aiEiD~   80 (284)
                      +-+++.-.|++. ++ .|++.||| |.+++.++.+++..   .+..+|+.|||+|||+|.++.+++.+++.+|+++|+|+
T Consensus         4 ~~k~l~~~l~~~~~f~~p~~~l~q-~~Tp~~ia~~~~~~a~~~~dl~g~~vlDlg~G~G~l~i~a~~~g~~~v~~vDid~   82 (207)
T 1wy7_A            4 RKKELAIALSKLKGFKNPKVWLEQ-YRTPGNAASELLWLAYSLGDIEGKVVADLGAGTGVLSYGALLLGAKEVICVEVDK   82 (207)
T ss_dssp             CCHHHHHHHHTSCCCSSCCGGGTC-CCCCHHHHHHHHHHHHHTTSSTTCEEEEETCTTCHHHHHHHHTTCSEEEEEESCH
T ss_pred             CHHHHHHHHHCCCCCCCCCCCCCC-CCCCHHHHHHHHHHHHHCCCCCCCEEEECCCCCCHHHHHHHHCCCCEEEEECCCH
T ss_conf             078999998158998999735113-7999999999999998649879898999134256999999974998699987989


Q ss_pred             CCHHHHHHHHHHHHCCCCCCHHHHCCCCHHHHCCCCCCEEEEECCCHHHHH
Q ss_conf             303688787532200122000000014315521332220112023224678
Q gi|254780398|r   81 QFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGT  131 (284)
Q Consensus        81 ~~~~~l~~~~~~~~~~~~ii~~Dal~~d~~~~~~~~~~~~vvgNLPYnIss  131 (284)
                      ..++.+++.......+.+++.+|+.+++.       ..-.||+|.||+..+
T Consensus        83 ~~~~~a~~N~~~~~~~~~~~~~d~~~~~~-------~~D~ii~npP~~~~~  126 (207)
T 1wy7_A           83 EAVDVLIENLGEFKGKFKVFIGDVSEFNS-------RVDIVIMNPPFGSQR  126 (207)
T ss_dssp             HHHHHHHHHTGGGTTSEEEEESCGGGCCC-------CCSEEEECCCCSSSS
T ss_pred             HHHHHHHHHHHHCCCCCEEEECCHHHHHC-------CCCEEECCCCCCHHC
T ss_conf             99999999999839982799766788614-------654644488852010


No 11 
>1ne2_A Hypothetical protein TA1320; structural genomics, conserved hypothetical protein, PSI, protein structure initiative; 1.75A {Thermoplasma acidophilum} SCOP: c.66.1.32
Probab=99.23  E-value=2.8e-10  Score=82.84  Aligned_cols=108  Identities=22%  Similarity=0.242  Sum_probs=83.8

Q ss_pred             HHHHHHHCCC--CCCCCCCCCCCCCHHHHHHHHHHC---CCCCCCEEEEECCCCCHHHHHHHHCCCCEEEEECCCCCCHH
Q ss_conf             9999998189--843365841123989999999971---98999879997589882346775023525998425543036
Q gi|254780398|r   10 LKTILSHYKI--IPKKYMGQNFLLDLNILKKIAESS---GSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFP   84 (284)
Q Consensus        10 i~~ll~~~~~--~p~k~lGQnFL~d~~i~~~iv~~~---~~~~~~~VlEIGpG~G~LT~~Ll~~~~~~v~aiEiD~~~~~   84 (284)
                      +.-.|++..-  .|+-+|-|. .++..++.+++..+   +...|+.|||+|||+|.|+..++.+++++|+++|+|+..++
T Consensus        10 l~~~l~~~~~~~~~~~~leQY-~t~~~iaa~~~~~~~~~gd~~Gk~VLDlGcGtG~l~i~a~~~ga~~V~~vDid~~a~~   88 (200)
T 1ne2_A           10 LEIRLQKLQQQGNFKNYLEQY-PTDASTAAYFLIEIYNDGNIGGRSVIDAGTGNGILACGSYLLGAESVTAFDIDPDAIE   88 (200)
T ss_dssp             HHHHHHTSCCCC--------C-CCCHHHHHHHHHHHHHHTSSBTSEEEEETCTTCHHHHHHHHTTBSEEEEEESCHHHHH
T ss_pred             HHHHHHCCCCCCCCCCCCCCC-CCCHHHHHHHHHHHHHCCCCCCCEEEECCCCHHHHHHHHHHCCCCEEEEEECCHHHHH
T ss_conf             999984689999998771007-9988999999999986699893989987575109999999679987967508999999


Q ss_pred             HHHHHHHHHHCCCCCCHHHHCCCCHHHHCCCCCCEEEEECCCHHH
Q ss_conf             887875322001220000000143155213322201120232246
Q gi|254780398|r   85 ILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNI  129 (284)
Q Consensus        85 ~l~~~~~~~~~~~~ii~~Dal~~d~~~~~~~~~~~~vvgNLPYnI  129 (284)
                      .++++..    +++++++|+.+++-       .--.||+|.||..
T Consensus        89 ~a~~N~~----~~~~~~~d~~~~~~-------~fD~Vi~NPPfg~  122 (200)
T 1ne2_A           89 TAKRNCG----GVNFMVADVSEISG-------KYDTWIMNPPFGS  122 (200)
T ss_dssp             HHHHHCT----TSEEEECCGGGCCC-------CEEEEEECCCC--
T ss_pred             HHHHHHH----HCCCEEEEHHHCCC-------CCCEEEECCCCCH
T ss_conf             9999898----57853765210577-------5488987798631


No 12 
>1dus_A MJ0882; hypothetical protein, methanococcus jannaschii, structural genomics, BSGC structure funded by NIH; 1.80A {Methanocaldococcus jannaschii} SCOP: c.66.1.4
Probab=99.16  E-value=1.7e-10  Score=84.17  Aligned_cols=108  Identities=15%  Similarity=0.215  Sum_probs=83.1

Q ss_pred             CCCCCCCCCHHHHHHHHHHCCCCCCCEEEEECCCCCHHHHHHHHCCCCEEEEECCCCCCHHHHHHHHHHH--H-CCCCCC
Q ss_conf             6584112398999999997198999879997589882346775023525998425543036887875322--0-012200
Q gi|254780398|r   24 YMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQH--P-NRLEII  100 (284)
Q Consensus        24 ~lGQnFL~d~~i~~~iv~~~~~~~~~~VlEIGpG~G~LT~~Ll~~~~~~v~aiEiD~~~~~~l~~~~~~~--~-~~~~ii  100 (284)
                      -+|++.+ |.. .+-+++.+.+.+++.|||+|||.|.++..+++.+ .+|+++|+|+.+++.+++....+  + .+++++
T Consensus        31 vf~~~~~-d~~-t~~Ll~~l~~~~~~~vLDiGcG~G~~~~~la~~~-~~v~~iDis~~~i~~a~~n~~~~~l~~~~i~~~  107 (194)
T 1dus_A           31 VFSYGKV-DKG-TKILVENVVVDKDDDILDLGCGYGVIGIALADEV-KSTTMADINRRAIKLAKENIKLNNLDNYDIRVV  107 (194)
T ss_dssp             STTTTSC-CHH-HHHHHHHCCCCTTCEEEEETCTTSHHHHHHGGGS-SEEEEEESCHHHHHHHHHHHHHTTCTTSCEEEE
T ss_pred             CCCCCCC-CHH-HHHHHHHCCCCCCCEEEEECCCCCHHHHHHHHHC-CEEEEEECCHHHHHHHHHHHHHHCCCCCEEEEE
T ss_conf             7689986-999-9999982898899949995696429999999738-847998263678899999999819998619999


Q ss_pred             HHHHCCCCHHHHCCCCCCEEEEECCCHHHHHHHHHHHHH
Q ss_conf             000001431552133222011202322467889999985
Q gi|254780398|r  101 QDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWIS  139 (284)
Q Consensus       101 ~~Dal~~d~~~~~~~~~~~~vvgNLPYnIss~Il~~ll~  139 (284)
                      ++|+++. +++    ..--.|++|.||+...+.+..++.
T Consensus       108 ~~D~~~~-~~~----~~fD~Ii~~~~~~~~~~~~~~~l~  141 (194)
T 1dus_A          108 HSDLYEN-VKD----RKYNKIITNPPIRAGKEVLHRIIE  141 (194)
T ss_dssp             ECSTTTT-CTT----SCEEEEEECCCSTTCHHHHHHHHH
T ss_pred             ECCHHHH-CCC----CCCCEEEECCCHHCCCHHHHHHHH
T ss_conf             8736763-356----774399999522116156799999


No 13 
>2ih2_A Modification methylase TAQI; DNA, DNA methyltransferase, target base partner, 5- methylpyrimidin-2(1H)-ONE, base flipping; HET: 5PY 6MA NEA; 1.61A {Thermus aquaticus} SCOP: c.66.1.27 d.287.1.1 PDB: 2ibs_A* 2ibt_A* 2ih4_A* 2ih5_A* 2jg3_A* 2np6_A* 2np7_A* 1aqj_A* 1aqi_A* 2adm_A* 1g38_A*
Probab=99.09  E-value=7.2e-10  Score=80.34  Aligned_cols=102  Identities=19%  Similarity=0.192  Sum_probs=79.7

Q ss_pred             HHHHCCCCCCCCCCCCCCCCHHHHHHHHHHCCCCCCCEEEEECCCCCHHHHHHHHCC--CCEEEEECCCCCCHHHHHHHH
Q ss_conf             999818984336584112398999999997198999879997589882346775023--525998425543036887875
Q gi|254780398|r   13 ILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLG--ARKVIVIEKDQQFFPILKDIS   90 (284)
Q Consensus        13 ll~~~~~~p~k~lGQnFL~d~~i~~~iv~~~~~~~~~~VlEIGpG~G~LT~~Ll~~~--~~~v~aiEiD~~~~~~l~~~~   90 (284)
                      +|....=-.+|++||.| +...+++.|++.+...+++.|+|-+||.|.+-.+++++.  ..+++++|+|+..++.++   
T Consensus         6 ~~~~~s~~~~k~~G~~y-TP~~i~~~~~~~l~~~~~~~IlDPacGsG~FL~~~~~~~~~~~~i~G~did~~~~~la~---   81 (421)
T 2ih2_A            6 LLSLPSNSAPRSLGRVE-TPPEVVDFMVSLAEAPRGGRVLEPACAHGPFLRAFREAHGTAYRFVGVEIDPKALDLPP---   81 (421)
T ss_dssp             ---------------CC-CCHHHHHHHHHHCCCCTTCEEEEETCTTCHHHHHHHHHHCSCSEEEEEESCTTTCCCCT---
T ss_pred             HHHHHHHHCCCCCCEEC-CCHHHHHHHHHHCCCCCCCEEEECCCCHHHHHHHHHHHCCCCCEEEEEECCHHHHHHHH---
T ss_conf             64211001334298788-91999999999478999699996877646999999986776786999979899999999---


Q ss_pred             HHHHCCCCCCHHHHCCCCHHHHCCCCCCEEEEECCCHH
Q ss_conf             32200122000000014315521332220112023224
Q gi|254780398|r   91 SQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYN  128 (284)
Q Consensus        91 ~~~~~~~~ii~~Dal~~d~~~~~~~~~~~~vvgNLPYn  128 (284)
                           ..+++++|++..++.+-++     .||||.||.
T Consensus        82 -----~~~i~~~D~l~~~~~~~fD-----~VigNPPy~  109 (421)
T 2ih2_A           82 -----WAEGILADFLLWEPGEAFD-----LILGNPPYG  109 (421)
T ss_dssp             -----TEEEEESCGGGCCCSSCEE-----EEEECCCCC
T ss_pred             -----HHHHHHCCCCCCCCCCCCC-----EEEECCCCC
T ss_conf             -----7427737733368545777-----787257655


No 14 
>3lpm_A Putative methyltransferase; structural genomics, protein structure initiative, NEW YORK structural genomix research consortium, nysgxrc; 2.40A {Listeria monocytogenes}
Probab=99.06  E-value=2.9e-10  Score=82.77  Aligned_cols=102  Identities=20%  Similarity=0.267  Sum_probs=76.0

Q ss_pred             CCCCCCCHHHHHHHHHHCCC-CCCCEEEEECCCCCHHHHHHHHCCCCEEEEECCCCCCHHHHHHHHHHH--HCCCCCCHH
Q ss_conf             84112398999999997198-999879997589882346775023525998425543036887875322--001220000
Q gi|254780398|r   26 GQNFLLDLNILKKIAESSGS-LDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQH--PNRLEIIQD  102 (284)
Q Consensus        26 GQnFL~d~~i~~~iv~~~~~-~~~~~VlEIGpG~G~LT~~Ll~~~~~~v~aiEiD~~~~~~l~~~~~~~--~~~~~ii~~  102 (284)
                      |..|-+|.-++...+   .. .++..|||+|+|.|+++..++++...+|++||+|+.+++.++++...+  .++++++++
T Consensus        30 ~~r~~~D~~lLa~~~---~~~~~~~~vLDlG~G~G~~~l~la~~~~~~v~~vDi~~~~~~~A~~N~~~n~l~~~v~~~~~  106 (259)
T 3lpm_A           30 VFSFSIDAVLLAKFS---YLPIRKGKIIDLCSGNGIIPLLLSTRTKAKIVGVEIQERLADMAKRSVAYNQLEDQIEIIEY  106 (259)
T ss_dssp             TBCCCHHHHHHHHHC---CCCSSCCEEEETTCTTTHHHHHHHTTCCCEEEEECCSHHHHHHHHHHHHHTTCTTTEEEECS
T ss_pred             CCCCCHHHHHHHHHH---CCCCCCCEEEEEECCCCHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHCCCCHHHEEEEH
T ss_conf             734621799999885---08667997999725858999999867898899999989999999999986073301123300


Q ss_pred             HHCCCCHHHHCCCCCCEEEEECCCHHHHHH
Q ss_conf             000143155213322201120232246788
Q gi|254780398|r  103 DALKVDFEKFFNISSPIRIIANLPYNIGTR  132 (284)
Q Consensus       103 Dal~~d~~~~~~~~~~~~vvgNLPYnIss~  132 (284)
                      |+.++.  +....+.--.||+|.||.-++.
T Consensus       107 D~~~~~--~~~~~~~fD~Iv~NPPy~~~~~  134 (259)
T 3lpm_A          107 DLKKIT--DLIPKERADIVTCNPPYFATPD  134 (259)
T ss_dssp             CGGGGG--GTSCTTCEEEEEECCCC-----
T ss_pred             HHHHHH--HCCCCCCCCEEEECCCCCCCCC
T ss_conf             111000--1035542547885788536873


No 15 
>2ozv_A Hypothetical protein ATU0636; structural genomics, predicted transferase, predicted O-methyltransferase, PFAM PF05175, PSI-2; HET: MSE; 1.70A {Agrobacterium tumefaciens str}
Probab=99.02  E-value=4.2e-10  Score=81.78  Aligned_cols=102  Identities=17%  Similarity=0.207  Sum_probs=73.7

Q ss_pred             CCCCCCHHHHHHHHHHCCCCCCCEEEEECCCCCHHHHHHHHCCCC-EEEEECCCCCCHHHHHHHHH-----HHHCCCCCC
Q ss_conf             411239899999999719899987999758988234677502352-59984255430368878753-----220012200
Q gi|254780398|r   27 QNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGAR-KVIVIEKDQQFFPILKDISS-----QHPNRLEII  100 (284)
Q Consensus        27 QnFL~d~~i~~~iv~~~~~~~~~~VlEIGpG~G~LT~~Ll~~~~~-~v~aiEiD~~~~~~l~~~~~-----~~~~~~~ii  100 (284)
                      =.|=+|.-++..   .+...++..|||+|+|.|+++..|+.+.+. +|++||+|+.+++.+++...     ...++++++
T Consensus        19 yR~~~DavLLAa---~~~~~~~~rVLDlG~G~G~i~l~La~r~~~~~v~gvEi~~~~~~lAr~N~~ln~~~~~~~ri~~~   95 (260)
T 2ozv_A           19 FQGHMDAMLLAS---LVADDRACRIADLGAGAGAAGMAVAARLEKAEVTLYERSQEMAEFARRSLELPDNAAFSARIEVL   95 (260)
T ss_dssp             ----CHHHHHHH---TCCCCSCEEEEECCSSSSHHHHHHHHHCTTEEEEEEESSHHHHHHHHHHTTSGGGTTTGGGEEEE
T ss_pred             ECCCHHHHHHHH---HCCCCCCCEEEECCHHHHHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHHHHCCCCCCCEEE
T ss_conf             877527999972---36888989999954367699999998589988999989999999999999986544332353589


Q ss_pred             HHHHCCCCHHHH---CCCCCCEEEEECCCHHHHH
Q ss_conf             000001431552---1332220112023224678
Q gi|254780398|r  101 QDDALKVDFEKF---FNISSPIRIIANLPYNIGT  131 (284)
Q Consensus       101 ~~Dal~~d~~~~---~~~~~~~~vvgNLPYnIss  131 (284)
                      ++|+........   ...+.--.||+|.||+-.+
T Consensus        96 ~~Di~~~~~~~~~~~~~~~~fD~VvsNPPY~~~~  129 (260)
T 2ozv_A           96 EADVTLRAKARVEAGLPDEHFHHVIMNPPYNDAG  129 (260)
T ss_dssp             ECCTTCCHHHHHHTTCCTTCEEEEEECCCC----
T ss_pred             ECHHHCCCHHHHHHHHCCCCCCEEEECCCCCCCC
T ss_conf             6332132212344331367626798669844666


No 16 
>2yvl_A TRMI protein, hypothetical protein; tRNA, methyltransferase, S-adenosylmethionine, structural genomics, NPPSFA; HET: SAM; 2.20A {Aquifex aeolicus VF5}
Probab=98.96  E-value=2.3e-09  Score=77.23  Aligned_cols=93  Identities=14%  Similarity=0.121  Sum_probs=76.1

Q ss_pred             CCCHHHHHHHHHHCCCCCCCEEEEECCCCCHHHHHHHHCCCCEEEEECCCCCCHHHHHHHHHHHH--CCCCCCHHHHCCC
Q ss_conf             23989999999971989998799975898823467750235259984255430368878753220--0122000000014
Q gi|254780398|r   30 LLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQHP--NRLEIIQDDALKV  107 (284)
Q Consensus        30 L~d~~i~~~iv~~~~~~~~~~VlEIGpG~G~LT~~Ll~~~~~~v~aiEiD~~~~~~l~~~~~~~~--~~~~ii~~Dal~~  107 (284)
                      .+-+.-+..|+..+++.+++.|||+|+|.|++|..|++.+ .+|+++|+++.+++.+++.+..+.  ++++++++|+.+.
T Consensus        74 iiypkD~~~Ii~~l~i~pG~rVLEiGtGsG~lt~~La~~~-g~v~t~e~~e~~~~~A~~n~~~~g~~~nv~~~~~D~~~~  152 (248)
T 2yvl_A           74 IIYPKDSFYIALKLNLNKEKRVLEFGTGSGALLAVLSEVA-GEVWTFEAVEEFYKTAQKNLKKFNLGKNVKFFNVDFKDA  152 (248)
T ss_dssp             CCCHHHHHHHHHHTTCCTTCEEEEECCTTSHHHHHHHHHS-SEEEEECSCHHHHHHHHHHHHHTTCCTTEEEECSCTTTS
T ss_pred             CCCHHHHHHHHHHHCCCCCCEEEECCCCCHHHHHHHHHCC-CEEEEECCCHHHHHHHHHHHHHHCCCCCEEEEECCHHHC
T ss_conf             0678999999998289999979973743119999998607-879998288999999999899700577059999122214


Q ss_pred             CHHHHCCCCCCEEEEECCCH
Q ss_conf             31552133222011202322
Q gi|254780398|r  108 DFEKFFNISSPIRIIANLPY  127 (284)
Q Consensus       108 d~~~~~~~~~~~~vvgNLPY  127 (284)
                      ++++-    ..-.|+.++|-
T Consensus       153 ~~~~~----~fD~V~ld~p~  168 (248)
T 2yvl_A          153 EVPEG----IFHAAFVDVRE  168 (248)
T ss_dssp             CCCTT----CBSEEEECSSC
T ss_pred             CCCCC----CCCEEEEECCC
T ss_conf             32458----78999991787


No 17 
>1jg1_A PIMT;, protein-L-isoaspartate O-methyltransferase; rossmann methyltransferase, protein repair isomerization; HET: SAH; 1.20A {Pyrococcus furiosus} SCOP: c.66.1.7 PDB: 1jg2_A* 1jg3_A* 1jg4_A*
Probab=98.96  E-value=2.1e-09  Score=77.41  Aligned_cols=82  Identities=18%  Similarity=0.259  Sum_probs=69.9

Q ss_pred             CCCCCCCHHHHHHHHHHCCCCCCCEEEEECCCCCHHHHHHHHCCCCEEEEECCCCCCHHHHHHHHHHHH-CCCCCCHHHH
Q ss_conf             841123989999999971989998799975898823467750235259984255430368878753220-0122000000
Q gi|254780398|r   26 GQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQHP-NRLEIIQDDA  104 (284)
Q Consensus        26 GQnFL~d~~i~~~iv~~~~~~~~~~VlEIGpG~G~LT~~Ll~~~~~~v~aiEiD~~~~~~l~~~~~~~~-~~~~ii~~Da  104 (284)
                      || ++..+.+..++.+.+++.+++.|||||+|+|.+|..|++..-..|++||+|+.+++.+++.+.... .++++++||+
T Consensus        71 ~~-~is~P~~~A~ml~~L~l~~g~~VLeIGsGtGy~ta~la~l~g~~V~~IE~~~~l~~~a~~~l~~~g~~nv~~~~gd~  149 (235)
T 1jg1_A           71 GQ-TVSAPHMVAIMLEIANLKPGMNILEVGTGSGWNAALISEIVKTDVYTIERIPELVEFAKRNLERAGVKNVHVILGDG  149 (235)
T ss_dssp             TC-EECCHHHHHHHHHHHTCCTTCCEEEECCTTSHHHHHHHHHHCSCEEEEESCHHHHHHHHHHHHHTTCCSEEEEESCG
T ss_pred             CC-EECHHHHHHHHHHHCCCCCCCEEEEECCCCCHHHHHHHHHCCCEEEEEEECHHHHHHHHHHHHHCCCCEEEEEECCC
T ss_conf             98-97668999999997048999879994788767899999864973999962889999999999980997169998870


Q ss_pred             CCCC
Q ss_conf             0143
Q gi|254780398|r  105 LKVD  108 (284)
Q Consensus       105 l~~d  108 (284)
                      ..-.
T Consensus       150 ~~g~  153 (235)
T 1jg1_A          150 SKGF  153 (235)
T ss_dssp             GGCC
T ss_pred             CCCC
T ss_conf             0166


No 18 
>2qm3_A Predicted methyltransferase; putative methyltransferase, structural genomics, PSI-2, protein structure initiative; HET: MSE; 2.05A {Pyrococcus furiosus dsm 3638}
Probab=98.93  E-value=5.6e-09  Score=74.77  Aligned_cols=113  Identities=13%  Similarity=0.179  Sum_probs=84.3

Q ss_pred             CCCCCCCCCCCCCCCCHHHHHHHHHH--CCCCCCCEEEEECCCCCH-HHHHHHHCCCCEEEEECCCCCCHHHHHHHHHHH
Q ss_conf             18984336584112398999999997--198999879997589882-346775023525998425543036887875322
Q gi|254780398|r   17 YKIIPKKYMGQNFLLDLNILKKIAES--SGSLDGITVIEIGAGPGN-LTQMLLTLGARKVIVIEKDQQFFPILKDISSQH   93 (284)
Q Consensus        17 ~~~~p~k~lGQnFL~d~~i~~~iv~~--~~~~~~~~VlEIGpG~G~-LT~~Ll~~~~~~v~aiEiD~~~~~~l~~~~~~~   93 (284)
                      .+.+|...+-|.+.....+..+....  ....++..||++|+|+|. ++.+++. ++.+|+++|+|+++++.+++....+
T Consensus       140 ~~p~~~~~~~q~~~~~~~~~~r~~~~~~~~~~~g~~vldlg~g~g~~l~~~l~~-~~~~V~~vDi~~~~l~~a~~~a~~~  218 (373)
T 2qm3_A          140 DRPEPLHEFDQAYVTPETTVARVILMHTRGDLENKDIFVLGDDDLTSIALMLSG-LPKRIAVLDIDERLTKFIEKAANEI  218 (373)
T ss_dssp             TCCCCCGGGTCCCBCHHHHHHHHHHHHHTTCSTTCEEEEESCTTCHHHHHHHHT-CCSEEEEECSCHHHHHHHHHHHHHH
T ss_pred             CCCCCEEEHHCCCCCHHHHHHHHHHHHHCCCCCCCEEEEEECCCHHHHHHHHHC-CCCEEEEEECCHHHHHHHHHHHHHH
T ss_conf             599750461102144889999999998637778997999979924999999976-9998999979799999999999981


Q ss_pred             H-CCCCCCHHHHCCCCHHHHCCCCCCEEEEECCCHHHHHH
Q ss_conf             0-01220000000143155213322201120232246788
Q gi|254780398|r   94 P-NRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTR  132 (284)
Q Consensus        94 ~-~~~~ii~~Dal~~d~~~~~~~~~~~~vvgNLPYnIss~  132 (284)
                      . .+++++++|+.+.....+.  +..-.|+.|.||++.+.
T Consensus       219 g~~~i~~~~~d~~~~~~~~~~--~~fD~v~~dpp~~~~~~  256 (373)
T 2qm3_A          219 GYEDIEIFTFDLRKPLPDYAL--HKFDTFITDPPETLEAI  256 (373)
T ss_dssp             TCCCEEEECCCTTSCCCTTTS--SCBSEEEECCCSSHHHH
T ss_pred             CCCCEEEEECHHHHHHHHHCC--CCCCEEEECCCCCCCCH
T ss_conf             997439985308663245407--88898998999864427


No 19 
>2f8l_A Hypothetical protein LMO1582; 16411011, structural genomics, PSI, protein structure initiative, joint center for structural genomics; HET: MSE SAM; 2.20A {Listeria monocytogenes} SCOP: c.66.1.45
Probab=98.93  E-value=1.6e-08  Score=71.92  Aligned_cols=178  Identities=9%  Similarity=0.093  Sum_probs=108.7

Q ss_pred             CCCCCCCCCCCCCCCHHHHHHHHHHC----CCCCCCEEEEECCCCCHHHHHHHHC------CCCEEEEECCCCCCHHHHH
Q ss_conf             89843365841123989999999971----9899987999758988234677502------3525998425543036887
Q gi|254780398|r   18 KIIPKKYMGQNFLLDLNILKKIAESS----GSLDGITVIEIGAGPGNLTQMLLTL------GARKVIVIEKDQQFFPILK   87 (284)
Q Consensus        18 ~~~p~k~lGQnFL~d~~i~~~iv~~~----~~~~~~~VlEIGpG~G~LT~~Ll~~------~~~~v~aiEiD~~~~~~l~   87 (284)
                      ..+-.+..||.| +-+.++.-|+..+    +..++..|++.|||.|.+..+++++      ...+++++|+|+.++..++
T Consensus        98 ~~~~~~~~g~~~-TP~~i~~~m~~l~~~~~~~~~~~~vlDp~cGsG~~l~~~~~~l~~~~~~~~~~~g~di~~~~~~~a~  176 (344)
T 2f8l_A           98 GMKHGIQVNHQM-TPDSIGFIVAYLLEKVIQKKKNVSILDPACGTANLLTTVINQLELKGDVDVHASGVDVDDLLISLAL  176 (344)
T ss_dssp             HTSSSCCGGGCC-CCHHHHHHHHHHHHHHHTTCSEEEEEETTCTTSHHHHHHHHHHHTTSSCEEEEEEEESCHHHHHHHH
T ss_pred             HHHHCCCCCEEC-CCHHHHHHHHHHHHHHHCCCCCCEEEECCCCCCHHHHHHHHHHHHCCCCCEEEEEEECCHHHHHHHH
T ss_conf             998436488137-8489999999999998378999889954899668999999998753677618999989999999999


Q ss_pred             HHHHHHHCCCCCCHHHHCCCCHHHHCCCCCCEEEEECCCHHHHHH---------------------HHHHHHHHHCCCCC
Q ss_conf             875322001220000000143155213322201120232246788---------------------99999852010000
Q gi|254780398|r   88 DISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTR---------------------LLFNWISADTWPPF  146 (284)
Q Consensus        88 ~~~~~~~~~~~ii~~Dal~~d~~~~~~~~~~~~vvgNLPYnIss~---------------------Il~~ll~~~~~~~~  146 (284)
                      ....-......++++|.+......-+     -.||||.||+....                     ++.+.+.. ..+.+
T Consensus       177 ~n~~~~~~~~~~~~~d~~~~~~~~~f-----D~iv~NPP~~~~~~~~~~~~~~~~~~~~~~~~~~~fi~~~~~~-Lk~~G  250 (344)
T 2f8l_A          177 VGADLQRQKMTLLHQDGLANLLVDPV-----DVVISDLPVGYYPDDENAKTFELCREEGHSFAHFLFIEQGMRY-TKPGG  250 (344)
T ss_dssp             HHHHHHTCCCEEEESCTTSCCCCCCE-----EEEEEECCCSEESCHHHHTTSTTCCSSSCEEHHHHHHHHHHHT-EEEEE
T ss_pred             HCCCCCCCHHHHHCCCCCCCCCCCCC-----CCCCCCCCCCCCCCHHHHHHHCCCCCCCCCHHHHHHHHHHHHH-CCCCC
T ss_conf             64000222123310011001346776-----7211579966763002444200013577425999999999985-48886


Q ss_pred             CCHHHHEEEHHHHHHHHHCCCHHHHHHHHHHHCCCCCEEEECCCCCCEECCCCCCCEEEEEECCCC
Q ss_conf             001102033447887530123123323454320133201200011000010578757887301258
Q gi|254780398|r  147 WESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFPSPKVTSTVIHFIPHL  212 (284)
Q Consensus       147 ~~~~vlmvQkEvA~Rl~a~pg~k~Yg~LSv~~q~~~~v~~~~~V~~~~F~P~PkVdS~vi~l~pk~  212 (284)
                        .+++++-.-+    ...   +.+..+--...-.+.++.+...|.+.|.+ ..|.++++.+.++.
T Consensus       251 --~~~~I~P~~~----l~~---~~~~~lR~~L~~~~~i~~ii~Lp~~~F~~-~~~~t~Ilvl~K~~  306 (344)
T 2f8l_A          251 --YLFFLVPDAM----FGT---SDFAKVDKFIKKNGHIEGIIKLPETLFKS-EQARKSILILEKAD  306 (344)
T ss_dssp             --EEEEEEEGGG----GGS---TTHHHHHHHHHHHEEEEEEEECCGGGSCC--CCCEEEEEEEECC
T ss_pred             --EEEEEECCHH----CCC---CHHHHHHHHHHHCCCEEEEEECCCCCCCC-CCCCEEEEEEECCC
T ss_conf             --2999966431----168---46999999998589189986578211799-99876999998789


No 20 
>1vbf_A 231AA long hypothetical protein-L-isoaspartate O- methyltransferase; trimeric coiled coil assembly, inter-subunit disulfide bridge; 2.80A {Sulfolobus tokodaii} SCOP: c.66.1.7
Probab=98.92  E-value=4.5e-09  Score=75.39  Aligned_cols=77  Identities=21%  Similarity=0.277  Sum_probs=68.0

Q ss_pred             CCCCHHHHHHHHHHCCCCCCCEEEEECCCCCHHHHHHHHCCCCEEEEECCCCCCHHHHHHHHHHHHCCCCCCHHHHCCC
Q ss_conf             1239899999999719899987999758988234677502352599842554303688787532200122000000014
Q gi|254780398|r   29 FLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKV  107 (284)
Q Consensus        29 FL~d~~i~~~iv~~~~~~~~~~VlEIGpG~G~LT~~Ll~~~~~~v~aiEiD~~~~~~l~~~~~~~~~~~~ii~~Dal~~  107 (284)
                      ++..+.+..++.+.+++.+++.|||||+|+|.+|..|++.. .+|+++|+|+.+++.+++.+.... +++++++|....
T Consensus        52 ~~s~p~~~a~~l~~L~l~~g~~VLeIG~GsGy~ta~La~l~-~~V~~vE~~~~~~~~A~~~~~~~~-nv~~~~gDg~~g  128 (231)
T 1vbf_A           52 NTTALNLGIFMLDELDLHKGQKVLEIGTGIGYYTALIAEIV-DKVVSVEINEKMYNYASKLLSYYN-NIKLILGDGTLG  128 (231)
T ss_dssp             EECCHHHHHHHHHHTTCCTTCEEEEECCTTSHHHHHHHHHS-SEEEEEESCHHHHHHHHHHHTTCS-SEEEEESCGGGC
T ss_pred             EECCHHHHHHHHHHCCCCCCCEEEEECCCCCHHHHHHHHHC-CEEEEECCCHHHHHHHHHHHCCCC-EEEEEECCHHCC
T ss_conf             10148999999997189997989997798778899999856-787676289999999998740686-268986632028


No 21 
>1xxl_A YCGJ protein; structural genomics, protein structure initiative, PSI, NEW YORK SGX research center for structural genomics, nysgxrc; 2.10A {Bacillus subtilis} SCOP: c.66.1.41 PDB: 2glu_A*
Probab=98.90  E-value=3e-09  Score=76.49  Aligned_cols=77  Identities=14%  Similarity=0.250  Sum_probs=65.5

Q ss_pred             HHHHHHHHHHCCCCCCCEEEEECCCCCHHHHHHHHCCCCEEEEECCCCCCHHHHHHHHHHHH-CCCCCCHHHHCCCCHH
Q ss_conf             89999999971989998799975898823467750235259984255430368878753220-0122000000014315
Q gi|254780398|r   33 LNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQHP-NRLEIIQDDALKVDFE  110 (284)
Q Consensus        33 ~~i~~~iv~~~~~~~~~~VlEIGpG~G~LT~~Ll~~~~~~v~aiEiD~~~~~~l~~~~~~~~-~~~~ii~~Dal~~d~~  110 (284)
                      -..+-.+++.+++.+++.|||||||+|.+|..|+++++ +|++||+.+.+++.+++...... .+++++++|+.+++++
T Consensus         7 ~~~~~~l~~~~~~~pg~rVLDiGCGtG~~~~~la~~~~-~v~gvD~S~~ml~~A~~~~~~~~~~~~~~~~~d~~~l~~~   84 (239)
T 1xxl_A            7 HHSLGLMIKTAECRAEHRVLDIGAGAGHTALAFSPYVQ-ECIGVDATKEMVEVASSFAQEKGVENVRFQQGTAESLPFP   84 (239)
T ss_dssp             HHHHHHHHHHHTCCTTCEEEEESCTTSHHHHHHGGGSS-EEEEEESCHHHHHHHHHHHHHHTCCSEEEEECBTTBCCSC
T ss_pred             HHHHHHHHHHHCCCCCCEEEEECCCCCHHHHHHHHCCC-EEEEEECCHHHHHHHHHHHHHCCCCCCEEEECCCCCCCCC
T ss_conf             65899999985899989899958868599999997099-7999979999999999865430565400010222356888


No 22 
>1l3i_A Precorrin-6Y methyltransferase/putative decarboxylase; structural genomics, beta barrel, rossmann fold, tetramer; HET: SAH; 1.95A {Methanothermobacterthermautotrophicus} SCOP: c.66.1.22 PDB: 1kxz_A 1l3b_A 1f38_A 1l3c_A*
Probab=98.87  E-value=1.1e-08  Score=73.02  Aligned_cols=103  Identities=14%  Similarity=0.104  Sum_probs=78.4

Q ss_pred             CCHHHHHHHHHHCCCCCCCEEEEECCCCCHHHHHHHHCCCCEEEEECCCCCCHHHHHHHHHHH--HCCCCCCHHHHCCCC
Q ss_conf             398999999997198999879997589882346775023525998425543036887875322--001220000000143
Q gi|254780398|r   31 LDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQH--PNRLEIIQDDALKVD  108 (284)
Q Consensus        31 ~d~~i~~~iv~~~~~~~~~~VlEIGpG~G~LT~~Ll~~~~~~v~aiEiD~~~~~~l~~~~~~~--~~~~~ii~~Dal~~d  108 (284)
                      +.+.+...+...+.+.+++.|||||||.|.+|..+++.+ .+|++||+|+.+++.+++....+  .++++++++|+.+..
T Consensus        17 t~~e~~a~il~~l~~~~g~~VLDiGcG~G~~s~~la~~~-~~V~avD~~~~~~~~a~~~~~~~gl~~~v~~~~gd~~~~~   95 (192)
T 1l3i_A           17 TAMEVRCLIMCLAEPGKNDVAVDVGCGTGGVTLELAGRV-RRVYAIDRNPEAISTTEMNLQRHGLGDNVTLMEGDAPEAL   95 (192)
T ss_dssp             CCHHHHHHHHHHHCCCTTCEEEEESCTTSHHHHHHHTTS-SEEEEEESCHHHHHHHHHHHHHTTCCTTEEEEESCHHHHH
T ss_pred             CHHHHHHHHHHHCCCCCCCEEEEEECCHHHHHHHHHHCC-CEEEEEECCCHHHHHHHHHHHHCCCCCCEEEEECCHHHCC
T ss_conf             869999999986699997999998387049999998439-9999999062889999999998099988899988621053


Q ss_pred             HHHHCCCCCCEEEEECCCHHHHHHHHHHHH
Q ss_conf             155213322201120232246788999998
Q gi|254780398|r  109 FEKFFNISSPIRIIANLPYNIGTRLLFNWI  138 (284)
Q Consensus       109 ~~~~~~~~~~~~vvgNLPYnIss~Il~~ll  138 (284)
                      .+    ....-.|+.+....-...++..+.
T Consensus        96 ~~----~~~~D~v~~~~~~~~~~~~l~~~~  121 (192)
T 1l3i_A           96 CK----IPDIDIAVVGGSGGELQEILRIIK  121 (192)
T ss_dssp             TT----SCCEEEEEESCCTTCHHHHHHHHH
T ss_pred             CC----CCCCCEEEEECCHHHHHHHHHHHH
T ss_conf             00----088688999180346999999999


No 23 
>1yb2_A Hypothetical protein TA0852; structural genomics, methyltransferase, midwest center for structural genomics, MCSG; 2.01A {Thermoplasma acidophilum dsm 1728} SCOP: c.66.1.13
Probab=98.87  E-value=2.8e-09  Score=76.64  Aligned_cols=87  Identities=21%  Similarity=0.374  Sum_probs=68.0

Q ss_pred             HHHHHHHCCCCCCCEEEEECCCCCHHHHHHHHC-CCC-EEEEECCCCCCHHHHHHHHHHHH--CCCCCCHHHHCCCCHHH
Q ss_conf             999999719899987999758988234677502-352-59984255430368878753220--01220000000143155
Q gi|254780398|r   36 LKKIAESSGSLDGITVIEIGAGPGNLTQMLLTL-GAR-KVIVIEKDQQFFPILKDISSQHP--NRLEIIQDDALKVDFEK  111 (284)
Q Consensus        36 ~~~iv~~~~~~~~~~VlEIGpG~G~LT~~Ll~~-~~~-~v~aiEiD~~~~~~l~~~~~~~~--~~~~ii~~Dal~~d~~~  111 (284)
                      +-.|+..+++.+++.|||+|+|.|++|..|++. ++. +|+++|+++.+++.+++.+..+.  ++++++++|+.+.-.+.
T Consensus        99 ~~~Ii~~l~i~PG~rVLEiG~GsG~lt~~LA~~v~~~g~V~~vD~~e~~~~~A~~n~~~~~~~~nV~~~~~Di~e~~~~~  178 (275)
T 1yb2_A           99 ASYIIMRCGLRPGMDILEVGVGSGNMSSYILYALNGKGTLTVVERDEDNLKKAMDNLSEFYDIGNVRTSRSDIADFISDQ  178 (275)
T ss_dssp             -------CCCCTTCEEEEECCTTSHHHHHHHHHHTTSSEEEEECSCHHHHHHHHHHHHTTSCCTTEEEECSCTTTCCCSC
T ss_pred             HHHHHHHCCCCCCCEEEEECCCCCHHHHHHHHHCCCCCEEEEEECCHHHHHHHHHHHHHHCCCCCCHHEEHHHHHCCCCC
T ss_conf             99999971999979899957718789999998608995899990889999999986776315675211101122102444


Q ss_pred             HCCCCCCEEEEECCCH
Q ss_conf             2133222011202322
Q gi|254780398|r  112 FFNISSPIRIIANLPY  127 (284)
Q Consensus       112 ~~~~~~~~~vvgNLPY  127 (284)
                      .+     -.|+-++|=
T Consensus       179 ~f-----D~V~ld~p~  189 (275)
T 1yb2_A          179 MY-----DAVIADIPD  189 (275)
T ss_dssp             CE-----EEEEECCSC
T ss_pred             CC-----CCEEEECCC
T ss_conf             23-----305870568


No 24 
>1wzn_A SAM-dependent methyltransferase; structural genomics, riken structural genomics/proteomics initiative, RSGI; HET: SAH; 1.90A {Pyrococcus horikoshii OT3} SCOP: c.66.1.43
Probab=98.86  E-value=5.1e-09  Score=75.05  Aligned_cols=77  Identities=17%  Similarity=0.367  Sum_probs=65.7

Q ss_pred             HHHHHHHHHCCCCCCCEEEEECCCCCHHHHHHHHCCCCEEEEECCCCCCHHHHHHHHHHHHCCCCCCHHHHCCCCHHH
Q ss_conf             999999997198999879997589882346775023525998425543036887875322001220000000143155
Q gi|254780398|r   34 NILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEK  111 (284)
Q Consensus        34 ~i~~~iv~~~~~~~~~~VlEIGpG~G~LT~~Ll~~~~~~v~aiEiD~~~~~~l~~~~~~~~~~~~ii~~Dal~~d~~~  111 (284)
                      ..+.++++...+.+...|||||||+|.+|..|++.++ +|++||+++.+++.++++......+++++++|+.++++++
T Consensus        28 ~~~~~~~~~~~~~~~~~ILDiGcGtG~~~~~l~~~g~-~v~gvD~s~~ml~~a~~~~~~~~~~~~~~~~d~~~l~~~~  104 (252)
T 1wzn_A           28 DFVEEIFKEDAKREVRRVLDLACGTGIPTLELAERGY-EVVGLDLHEEMLRVARRKAKERNLKIEFLQGDVLEIAFKN  104 (252)
T ss_dssp             HHHHHHHHHTCSSCCCEEEEETCTTCHHHHHHHHTTC-EEEEEESCHHHHHHHHHHHHHTTCCCEEEESCGGGCCCCS
T ss_pred             HHHHHHHHHHCCCCCCEEEEECCCCCHHHHHHHHCCC-EEEEEECCHHHHHHHHHHHHHCCCCCEEEECCHHHCCCCC
T ss_conf             9999999973578989899954758699999997699-8999974688999999977642875236865542056677


No 25 
>1dl5_A Protein-L-isoaspartate O-methyltransferase; isoaspartyl residues, protein repair, deamidation, post-translational modification; HET: SAH; 1.80A {Thermotoga maritima} SCOP: c.66.1.7 d.197.1.1
Probab=98.83  E-value=1e-08  Score=73.20  Aligned_cols=82  Identities=18%  Similarity=0.186  Sum_probs=68.3

Q ss_pred             CCCCHHHHHHHHHHCCCCCCCEEEEECCCCCHHHHHHHHCC--CCEEEEECCCCCCHHHHHHHHHHHH-CCCCCCHHHHC
Q ss_conf             12398999999997198999879997589882346775023--5259984255430368878753220-01220000000
Q gi|254780398|r   29 FLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLG--ARKVIVIEKDQQFFPILKDISSQHP-NRLEIIQDDAL  105 (284)
Q Consensus        29 FL~d~~i~~~iv~~~~~~~~~~VlEIGpG~G~LT~~Ll~~~--~~~v~aiEiD~~~~~~l~~~~~~~~-~~~~ii~~Dal  105 (284)
                      .+.-+.+..++++.+++.+++.|||||+|+|..|..|++..  ..+|++||+|+.+++.+++.+.... +++++++||+.
T Consensus        57 tis~P~~~A~ml~~L~l~~g~~VLeIGtGtGy~aa~la~~~~~~~~V~~iE~~~~l~~~A~~~l~~~g~~nv~~~~gD~~  136 (317)
T 1dl5_A           57 TSSQPSLMALFMEWVGLDKGMRVLEIGGGTGYNAAVMSRVVGEKGLVVSVEYSRKICEIAKRNVERLGIENVIFVCGDGY  136 (317)
T ss_dssp             EECCHHHHHHHHHHTTCCTTCEEEEECCTTSHHHHHHHHHHCTTCEEEEEESCHHHHHHHHHHHHHTTCCSEEEEESCGG
T ss_pred             EECHHHHHHHHHHHCCCCCCCEEEEECCCCCHHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHHCCCCEEEEECCHH
T ss_conf             62679999999997189999989991797647689998861888679999578178999999899735787399989557


Q ss_pred             CCCHH
Q ss_conf             14315
Q gi|254780398|r  106 KVDFE  110 (284)
Q Consensus       106 ~~d~~  110 (284)
                      +...+
T Consensus       137 ~g~~~  141 (317)
T 1dl5_A          137 YGVPE  141 (317)
T ss_dssp             GCCGG
T ss_pred             HCCCC
T ss_conf             58877


No 26 
>2b3t_A Protein methyltransferase HEMK; translation termination, methylation, conformational changes; HET: SAH; 3.10A {Escherichia coli} SCOP: c.66.1.30 PDB: 1t43_A*
Probab=98.80  E-value=1.1e-08  Score=72.89  Aligned_cols=104  Identities=12%  Similarity=0.223  Sum_probs=75.3

Q ss_pred             CCCCCCCCCCHHH----------HHHHHHHCCCCCCCEEEEECCCCCHHHHHHHHCCCC-EEEEECCCCCCHHHHHHHHH
Q ss_conf             3658411239899----------999999719899987999758988234677502352-59984255430368878753
Q gi|254780398|r   23 KYMGQNFLLDLNI----------LKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGAR-KVIVIEKDQQFFPILKDISS   91 (284)
Q Consensus        23 k~lGQnFL~d~~i----------~~~iv~~~~~~~~~~VlEIGpG~G~LT~~Ll~~~~~-~v~aiEiD~~~~~~l~~~~~   91 (284)
                      -=+|-.|.+|+++          ++...+... .....|+|+|+|.|.+...++...+. +|+++|+++..+..++++..
T Consensus        76 ~F~g~~f~v~~~vlIPRpeTE~lv~~~l~~~~-~~~~~ilDlgtGsG~I~i~la~~~p~~~v~a~Dis~~Al~~A~~Na~  154 (276)
T 2b3t_A           76 EFWSLPLFVSPATLIPRPDTECLVEQALARLP-EQPCRILDLGTGTGAIALALASERPDCEIIAVDRMPDAVSLAQRNAQ  154 (276)
T ss_dssp             EETTEEEECCTTSCCCCTTHHHHHHHHHHHSC-SSCCEEEEETCTTSHHHHHHHHHCTTSEEEEECSSHHHHHHHHHHHH
T ss_pred             EECCCEEEECCCCCCCCCHHHHHHHHHHHHCC-CCCCEEEEECCCCHHHHHHHHHHCCCCEEEEECCCHHHHHHHHHHHH
T ss_conf             78792787588770699769999999987514-57861764146532999999986898758864176688999999999


Q ss_pred             HHH-CCCCCCHHHHCCCCHHHHCCCCCCEEEEECCCHHHHHH
Q ss_conf             220-01220000000143155213322201120232246788
Q gi|254780398|r   92 QHP-NRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTR  132 (284)
Q Consensus        92 ~~~-~~~~ii~~Dal~~d~~~~~~~~~~~~vvgNLPYnIss~  132 (284)
                      .+. .+++++++|.+.....     +.--.||+|.||--++.
T Consensus       155 ~~~~~~v~~~~~D~~~~~~~-----~~fDlIvsNPPYi~~~~  191 (276)
T 2b3t_A          155 HLAIKNIHILQSDWFSALAG-----QQFAMIVSNPPYIDEQD  191 (276)
T ss_dssp             HHTCCSEEEECCSTTGGGTT-----CCEEEEEECCCCBCTTC
T ss_pred             HCCCCCEEEEECCCCCCCCC-----CCEEEEEECCCCCCHHH
T ss_conf             74998779997576433678-----84157885698677134


No 27 
>1i9g_A Hypothetical protein RV2118C; mtase, adoMet, crystal, structural genomics, PSI, protein structure initiative; HET: SAM; 1.98A {Mycobacterium tuberculosis} SCOP: c.66.1.13
Probab=98.80  E-value=1.9e-08  Score=71.52  Aligned_cols=169  Identities=17%  Similarity=0.141  Sum_probs=102.9

Q ss_pred             CCCHHHHHHHHHHCCCCCCCEEEEECCCCCHHHHHHHHC-CCC-EEEEECCCCCCHHHHHHHHHHH----HCCCCCCHHH
Q ss_conf             239899999999719899987999758988234677502-352-5998425543036887875322----0012200000
Q gi|254780398|r   30 LLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTL-GAR-KVIVIEKDQQFFPILKDISSQH----PNRLEIIQDD  103 (284)
Q Consensus        30 L~d~~i~~~iv~~~~~~~~~~VlEIGpG~G~LT~~Ll~~-~~~-~v~aiEiD~~~~~~l~~~~~~~----~~~~~ii~~D  103 (284)
                      .+-+.-+..|+..+++.+++.|||+|+|.|++|..|++. ++. +|+++|+++.+++.+++++..+    ..+++++++|
T Consensus        82 iiypkD~~~Ii~~ldi~PG~~VLE~GtGsG~lT~~LAr~vgp~G~V~t~D~~~~~~~~Ar~n~~~~~~~~~~nv~~~~~d  161 (280)
T 1i9g_A           82 VIYPKDAAQIVHEGDIFPGARVLEAGAGSGALTLSLLRAVGPAGQVISYEQRADHAEHARRNVSGCYGQPPDNWRLVVSD  161 (280)
T ss_dssp             CCCHHHHHHHHHHTTCCTTCEEEEECCTTSHHHHHHHHHHCTTSEEEEECSCHHHHHHHHHHHHHHHTSCCTTEEEECSC
T ss_pred             CCCHHHHHHHHHHHCCCCCCEEEEEEECCHHHHHHHHHHHCCCEEEEEEECCHHHHHHHHHHHHHHCCCCCCEEEEEECC
T ss_conf             55858999999984999999899922761599999999749985999995899999999985554315788629999555


Q ss_pred             HCCCCHHHHCCCCCCEEEEECCCHHHHHHHHHHHHHHHCCCCCCCHHHHEEEHHHHHHHHHCCCHHHHHHHHHHHCCCCC
Q ss_conf             00143155213322201120232246788999998520100000011020334478875301231233234543201332
Q gi|254780398|r  104 ALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTK  183 (284)
Q Consensus       104 al~~d~~~~~~~~~~~~vvgNLPYnIss~Il~~ll~~~~~~~~~~~~vlmvQkEvA~Rl~a~pg~k~Yg~LSv~~q~~~~  183 (284)
                      +.+..+++-    .--.|+-.+|--  ...+..+... ..|. ..-+++.-.-|=.+|++..-...         ..|.+
T Consensus       162 ~~~~~~~~~----~fD~VflDlp~P--~~~l~~~~~~-LkpG-G~lv~~~P~i~Qv~~~~~al~~~---------~~f~~  224 (280)
T 1i9g_A          162 LADSELPDG----SVDRAVLDMLAP--WEVLDAVSRL-LVAG-GVLMVYVATVTQLSRIVEALRAK---------QCWTE  224 (280)
T ss_dssp             GGGCCCCTT----CEEEEEEESSCG--GGGHHHHHHH-EEEE-EEEEEEESSHHHHHHHHHHHHHH---------SSBCC
T ss_pred             CCCCCCCCC----CCCEEEECCCCH--HHHHHHHHHH-CCCC-CEEEEECCCHHHHHHHHHHHHHH---------CCCCC
T ss_conf             122556678----878689727888--9999999984-4779-89999939899999999999973---------89877


Q ss_pred             EEEE------CCCCCCEECCCC--CCCEEEEEECCCCCCC
Q ss_conf             0120------001100001057--8757887301258855
Q gi|254780398|r  184 ATMM------FDISPHVFFPSP--KVTSTVIHFIPHLNPI  215 (284)
Q Consensus       184 v~~~------~~V~~~~F~P~P--kVdS~vi~l~pk~~~~  215 (284)
                      ++.+      ..|.+....|.-  --.++.+.+.+|-.+-
T Consensus       225 i~~~E~l~R~~~v~~~~~RP~~~~v~HTgfl~~ark~~~~  264 (280)
T 1i9g_A          225 PRAWETLQRGWNVVGLAVRPQHSMRGHTAFLVATRRLAPG  264 (280)
T ss_dssp             CEEECCCCCCEEEETTEEEECSCCCCCSCEEEEEEBCCTT
T ss_pred             CEEEEEEEEEEEECCCEECCCCCCCCCHHHHHHHHHCCCC
T ss_conf             5589998689886676248899885737998877660699


No 28 
>3evz_A Methyltransferase; NYSGXRC, NEW YORK SGX research center for structural genomics, protein structure initiative, PSI-2; 2.20A {Pyrococcus furiosus}
Probab=98.79  E-value=9.5e-09  Score=73.35  Aligned_cols=98  Identities=20%  Similarity=0.156  Sum_probs=70.5

Q ss_pred             CCCCCHHHHHHHHHHCCCCCCCEEEEECCCCCHHHHHHHHCCCC-EEEEECCCCCCHHHHHHHHHHHH--CCCCCCHHHH
Q ss_conf             11239899999999719899987999758988234677502352-59984255430368878753220--0122000000
Q gi|254780398|r   28 NFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGAR-KVIVIEKDQQFFPILKDISSQHP--NRLEIIQDDA  104 (284)
Q Consensus        28 nFL~d~~i~~~iv~~~~~~~~~~VlEIGpG~G~LT~~Ll~~~~~-~v~aiEiD~~~~~~l~~~~~~~~--~~~~ii~~Da  104 (284)
                      ..|+-+...+.++......+++.|||||+|.|.++..++++.+. +|+++|+++..++.+++....+.  .++....+|.
T Consensus        36 ~~liP~~~~~~l~~~~~~~~~~~vLDig~G~G~~~~~~a~~~~~~~v~~vDi~~~~~~~a~~n~~~~~~~~~i~~~~~~~  115 (230)
T 3evz_A           36 KGLVTTPISRYIFLKTFLRGGEVALEIGTGHTAMMALMAEKFFNCKVTATEVDEEFFEYARRNIERNNSNVRLVKSNGGI  115 (230)
T ss_dssp             TSCCCCHHHHHHHHHTTCCSSCEEEEECCTTTCHHHHHHHHHHCCEEEEEECCHHHHHHHHHHHHHTTCCCEEEECSSCS
T ss_pred             CCCCCCCHHHHHHHHHCCCCCCEEEEEECCHHHHHHHHHHHCCCCEEEEEECCCCHHHHHHHHHHHCCCCCEEEEEECCC
T ss_conf             95149837799999845789898999407443999999997799879999886311246776688606651799852110


Q ss_pred             CCCCHHHHCCCCCCEEEEECCCHHHH
Q ss_conf             01431552133222011202322467
Q gi|254780398|r  105 LKVDFEKFFNISSPIRIIANLPYNIG  130 (284)
Q Consensus       105 l~~d~~~~~~~~~~~~vvgNLPYnIs  130 (284)
                      ++...     .+.--.||+|.||.-+
T Consensus       116 ~~~~~-----~~~fD~Iv~NPPy~~~  136 (230)
T 3evz_A          116 IKGVV-----EGTFDVIFSAPPYYDK  136 (230)
T ss_dssp             STTTC-----CSCEEEEEECCCCC--
T ss_pred             HHHCC-----CCCCCEEEECCCCCCC
T ss_conf             12135-----7652489989995566


No 29 
>3mti_A RRNA methylase; SAM-dependent, PSI, MCSG, structural genomics, midwest cente structural genomics, protein structure initiative; 1.95A {Streptococcus thermophilus}
Probab=98.79  E-value=1.7e-08  Score=71.73  Aligned_cols=91  Identities=22%  Similarity=0.212  Sum_probs=67.4

Q ss_pred             HHHHHHHHCCCCCCCEEEEECCCCCHHHHHHHHCCCCEEEEECCCCCCHHHHHHHHHHHH-CCCCCCHHHHCCCCHHHHC
Q ss_conf             999999971989998799975898823467750235259984255430368878753220-0122000000014315521
Q gi|254780398|r   35 ILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQHP-NRLEIIQDDALKVDFEKFF  113 (284)
Q Consensus        35 i~~~iv~~~~~~~~~~VlEIGpG~G~LT~~Ll~~~~~~v~aiEiD~~~~~~l~~~~~~~~-~~~~ii~~Dal~~d~~~~~  113 (284)
                      ..+.++... +.+++.||++|||.|..|..|++. ..+|+|+|+++.+++.+++...... .+++++++|+-.++  ...
T Consensus        11 ~~~~~l~~~-l~~~~~VLD~gcG~G~~t~~LA~~-~~~V~aiDis~~al~~a~~n~~~~~l~nv~~~~~~~~~l~--~~~   86 (185)
T 3mti_A           11 MSHDFLAEV-LDDESIVVDATMGNGNDTAFLAGL-SKKVYAFDVQEQALGKTSQRLSDLGIENTELILDGHENLD--HYV   86 (185)
T ss_dssp             HHHHHHHTT-CCTTCEEEESCCTTSHHHHHHHTT-SSEEEEEESCHHHHHHHHHHHHHHTCCCEEEEESCGGGGG--GTC
T ss_pred             HHHHHHHHH-CCCCCEEEEEEEECCHHHHHHHHC-CCEEEECCCCHHHHHHHHHHHHHCCCCCEEEEECCHHHHH--HHC
T ss_conf             999999965-899999999963888999999826-9989975898788878999999829984899993677755--513


Q ss_pred             CCCCCEEEEECCCHHHH
Q ss_conf             33222011202322467
Q gi|254780398|r  114 NISSPIRIIANLPYNIG  130 (284)
Q Consensus       114 ~~~~~~~vvgNLPYnIs  130 (284)
                       .+....++.|+||.-.
T Consensus        87 -~~~~~~v~~~~~~~~~  102 (185)
T 3mti_A           87 -REPIRAAIFNLGYLPS  102 (185)
T ss_dssp             -CSCEEEEEEEEC----
T ss_pred             -CCCCCEEEEECCCCCC
T ss_conf             -5666569995265677


No 30 
>3kkz_A Uncharacterized protein Q5LES9; putative methyltransferase, BFR250, NESG, structural genomics, PSI-2; HET: SAM; 1.68A {Bacteroides fragilis nctc 9343} PDB: 3e7p_A
Probab=98.78  E-value=1.1e-08  Score=72.90  Aligned_cols=80  Identities=19%  Similarity=0.188  Sum_probs=64.0

Q ss_pred             CHHHHHHHHHHCC-CCCCCEEEEECCCCCHHHHHHHHCCCCEEEEECCCCCCHHHHHHHHHHH--HCCCCCCHHHHCCCC
Q ss_conf             9899999999719-8999879997589882346775023525998425543036887875322--001220000000143
Q gi|254780398|r   32 DLNILKKIAESSG-SLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQH--PNRLEIIQDDALKVD  108 (284)
Q Consensus        32 d~~i~~~iv~~~~-~~~~~~VlEIGpG~G~LT~~Ll~~~~~~v~aiEiD~~~~~~l~~~~~~~--~~~~~ii~~Dal~~d  108 (284)
                      ....+.++...+. ..++..|||||||+|..|..|++....+|++||+++.+++.+++.....  .++++++++|+.+++
T Consensus        30 ~~e~~~~~l~~l~~l~~~~~VLDIGCG~G~~~~~lA~~~~~~V~giD~s~~~l~~a~~~~~~~~l~~~v~~~~~d~~~l~  109 (267)
T 3kkz_A           30 SPEVTLKALSFIDNLTEKSLIADIGCGTGGQTMVLAGHVTGQVTGLDFLSGFIDIFNRNARQSGLQNRVTGIVGSMDDLP  109 (267)
T ss_dssp             CHHHHHHHHTTCCCCCTTCEEEEETCTTCHHHHHHHTTCSSEEEEEESCHHHHHHHHHHHHHTTCTTTEEEEECCTTSCC
T ss_pred             CHHHHHHHHHHCCCCCCCCEEEEECCCCCHHHHHHHHHCCCEEEEEECCCHHHHHHHHHCCCCCCCCCCCHHHCCCCCCC
T ss_conf             89999999981727999998999627897999999974799899997973165898873232344433100100123567


Q ss_pred             HHH
Q ss_conf             155
Q gi|254780398|r  109 FEK  111 (284)
Q Consensus       109 ~~~  111 (284)
                      +++
T Consensus       110 ~~~  112 (267)
T 3kkz_A          110 FRN  112 (267)
T ss_dssp             CCT
T ss_pred             CCC
T ss_conf             788


No 31 
>2esr_A Methyltransferase; structural genomics, hypothetical protein, PSI, protein structure initiative; HET: GLC; 1.80A {Streptococcus pyogenes MGAS10394} SCOP: c.66.1.46
Probab=98.78  E-value=7.5e-09  Score=74.00  Aligned_cols=94  Identities=20%  Similarity=0.302  Sum_probs=70.7

Q ss_pred             HHHHHHHHCC-CCCCCEEEEECCCCCHHHHHHHHCCCCEEEEECCCCCCHHHHHHHHHHH--HCCCCCCHHHHCCCCHHH
Q ss_conf             9999999719-8999879997589882346775023525998425543036887875322--001220000000143155
Q gi|254780398|r   35 ILKKIAESSG-SLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQH--PNRLEIIQDDALKVDFEK  111 (284)
Q Consensus        35 i~~~iv~~~~-~~~~~~VlEIGpG~G~LT~~Ll~~~~~~v~aiEiD~~~~~~l~~~~~~~--~~~~~ii~~Dal~~d~~~  111 (284)
                      +-+.+...+. ..++..||++|+|.|+++...+.++|++|++||.|+..++.+++.....  .++++++++|+.++- +.
T Consensus        18 vre~lfn~L~~~~~g~~vLDl~~GsG~~~iea~~r~a~~v~~ve~~~~a~~~~~~n~~~~~~~~~v~ii~~D~~~~l-~~   96 (177)
T 2esr_A           18 VRGAIFNMIGPYFNGGRVLDLFAGSGGLAIEAVSRGMSAAVLVEKNRKAQAIIQDNIIMTKAENRFTLLKMEAERAI-DC   96 (177)
T ss_dssp             CHHHHHHHHCSCCCSCEEEEETCTTCHHHHHHHHTTCCEEEEECCCHHHHHHHHHHHHTTTCGGGEEEECSCHHHHH-HH
T ss_pred             HHHHHHHHHHHHCCCCEEEECCEEHHHHHHHHHHCCCCCCEEEECHHHHHHHHHHHHHHHCCCCCEEEEECCHHHHH-HC
T ss_conf             99999998775569897999950379999999973862016783428899988875765135551024531155554-31


Q ss_pred             HCCCCCCEEEEECCCHHHHH
Q ss_conf             21332220112023224678
Q gi|254780398|r  112 FFNISSPIRIIANLPYNIGT  131 (284)
Q Consensus       112 ~~~~~~~~~vvgNLPYnIss  131 (284)
                       .. +.--.|+.+.||.-..
T Consensus        97 -~~-~~fDiI~~DPPy~~~~  114 (177)
T 2esr_A           97 -LT-GRFDLVFLDPPYAKET  114 (177)
T ss_dssp             -BC-SCEEEEEECCSSHHHH
T ss_pred             -CC-CCCCEEEECCCCCCHH
T ss_conf             -34-6788688799743116


No 32 
>2yxd_A Probable cobalt-precorrin-6Y C(15)- methyltransferase [decarboxylating]; alpha and beta protein (A/B) class; HET: MES; 2.30A {Methanocaldococcus jannaschii DSM2661}
Probab=98.78  E-value=1.4e-08  Score=72.24  Aligned_cols=77  Identities=17%  Similarity=0.172  Sum_probs=64.6

Q ss_pred             CCCHHHHHHHHHHCCCCCCCEEEEECCCCCHHHHHHHHCCCCEEEEECCCCCCHHHHHHHHHHHH-CCCCCCHHHHCCC
Q ss_conf             23989999999971989998799975898823467750235259984255430368878753220-0122000000014
Q gi|254780398|r   30 LLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQHP-NRLEIIQDDALKV  107 (284)
Q Consensus        30 L~d~~i~~~iv~~~~~~~~~~VlEIGpG~G~LT~~Ll~~~~~~v~aiEiD~~~~~~l~~~~~~~~-~~~~ii~~Dal~~  107 (284)
                      ++-+.+-.-++..+++.+++.|||+|+|.|.+|..+++. +.+|+|||+|+.+++.++++...+. .++++++||+.+.
T Consensus        18 ~Tk~evR~l~l~~L~l~~~~~VlDlg~G~G~~si~la~~-~~~V~ave~~~~~i~~a~~n~~~~gv~nv~~i~g~a~~~   95 (183)
T 2yxd_A           18 ITKEEIRAVSIGKLNLNKDDVVVDVGCGSGGMTVEIAKR-CKFVYAIDYLDGAIEVTKQNLAKFNIKNCQIIKGRAEDV   95 (183)
T ss_dssp             CCCHHHHHHHHHHHCCCTTCEEEEESCCCSHHHHHHHTT-SSEEEEEECSHHHHHHHHHHHHHTTCCSEEEEESCHHHH
T ss_pred             CCHHHHHHHHHHHCCCCCCCEEEEEECCCCHHHHHHHHH-CCEEEEEECCHHHHHHHHHHHHHCCCCCEEEEECCHHHH
T ss_conf             787999999999769989499999617476999998873-899999979899999999999976899879994645656


No 33 
>2fyt_A Protein arginine N-methyltransferase 3; structural genomics, structural genomics consortium, SGC; HET: SAH; 2.00A {Homo sapiens} SCOP: c.66.1.6 PDB: 1f3l_A*
Probab=98.78  E-value=9.9e-09  Score=73.24  Aligned_cols=89  Identities=18%  Similarity=0.295  Sum_probs=64.4

Q ss_pred             CCCCCCCC--CCCHHHHHH----HHHHCCCCCCCEEEEECCCCCHHHHHHHHCCCCEEEEECCCCCCHHHHHHHHH-HHH
Q ss_conf             33658411--239899999----99971989998799975898823467750235259984255430368878753-220
Q gi|254780398|r   22 KKYMGQNF--LLDLNILKK----IAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISS-QHP   94 (284)
Q Consensus        22 ~k~lGQnF--L~d~~i~~~----iv~~~~~~~~~~VlEIGpG~G~LT~~Ll~~~~~~v~aiEiD~~~~~~l~~~~~-~~~   94 (284)
                      -..+++||  |.|..=.+.    |.+.....+++.|||||+|+|.|+..+++.++++|+|||..+.+....+.... ...
T Consensus        33 ~~~~~~h~~Ml~D~~R~~~y~~ai~~~~~~~~~k~VLDlGcGtG~ls~~aA~~Ga~~V~avd~s~~~~~a~~~~~~~~~~  112 (340)
T 2fyt_A           33 YGHYGIHEEMLKDKIRTESYRDFIYQNPHIFKDKVVLDVGCGTGILSMFAAKAGAKKVLGVDQSEILYQAMDIIRLNKLE  112 (340)
T ss_dssp             GGSHHHHHHHHTCHHHHHHHHHHHHHCGGGTTTCEEEEETCTTSHHHHHHHHTTCSEEEEEESSTHHHHHHHHHHHTTCT
T ss_pred             HCCCHHHHHHHCCHHHHHHHHHHHHHCCCCCCCCEEEEECCCCCHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHCCC
T ss_conf             12745788773877789999999985721059698999327747999999975998899980989999999999974547


Q ss_pred             CCCCCCHHHHCCCCHH
Q ss_conf             0122000000014315
Q gi|254780398|r   95 NRLEIIQDDALKVDFE  110 (284)
Q Consensus        95 ~~~~ii~~Dal~~d~~  110 (284)
                      .+++++++|+.+++++
T Consensus       113 ~~i~~i~~d~~~l~~~  128 (340)
T 2fyt_A          113 DTITLIKGKIEEVHLP  128 (340)
T ss_dssp             TTEEEEESCTTTSCCS
T ss_pred             CCEEEEEEEHHHCCCC
T ss_conf             7516898148876476


No 34 
>3e05_A Precorrin-6Y C5,15-methyltransferase (decarboxylating); porphyrin metabolism, S-adenosyl-methionine, structural genomics; 1.80A {Geobacter metallireducens gs-15}
Probab=98.78  E-value=6.8e-08  Score=68.05  Aligned_cols=128  Identities=9%  Similarity=0.078  Sum_probs=82.6

Q ss_pred             CCCHHHHHHHHHHCCCCCCCEEEEECCCCCHHHHHHHHCCCC-EEEEECCCCCCHHHHHHHHHHHH-CCCCCCHHHHCCC
Q ss_conf             239899999999719899987999758988234677502352-59984255430368878753220-0122000000014
Q gi|254780398|r   30 LLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGAR-KVIVIEKDQQFFPILKDISSQHP-NRLEIIQDDALKV  107 (284)
Q Consensus        30 L~d~~i~~~iv~~~~~~~~~~VlEIGpG~G~LT~~Ll~~~~~-~v~aiEiD~~~~~~l~~~~~~~~-~~~~ii~~Dal~~  107 (284)
                      ++-+.+-.-+...+++.+++.|||||+|.|.+|..++...+. +|+|+|+|+..++.++++...+. .+++++++|+.+.
T Consensus        23 ~tk~evra~~l~~L~l~pg~~VLDiG~GsG~la~~~a~~~~~~~V~aiD~~~~~~~~a~~n~~~~g~~~~~~~~g~~~~~  102 (204)
T 3e05_A           23 ITKQEVRAVTLSKLRLQDDLVMWDIGAGSASVSIEASNLMPNGRIFALERNPQYLGFIRDNLKKFVARNVTLVEAFAPEG  102 (204)
T ss_dssp             SCCHHHHHHHHHHTTCCTTCEEEEETCTTCHHHHHHHHHCTTSEEEEEECCHHHHHHHHHHHHHHTCTTEEEEECCTTTT
T ss_pred             CCHHHHHHHHHHHCCCCCCCEEEEEEEEHHHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHCCCCEEEEEECCCCCC
T ss_conf             66899999999860999939999983107899999999789967999949999999999999981998589973453234


Q ss_pred             CHHHHCCCCCCEEEEECCCHHHHHHHHHHHHHHHCCCCCCCHHHHEEEHHHHHHHH
Q ss_conf             31552133222011202322467889999985201000000110203344788753
Q gi|254780398|r  108 DFEKFFNISSPIRIIANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERIT  163 (284)
Q Consensus       108 d~~~~~~~~~~~~vvgNLPYnIss~Il~~ll~~~~~~~~~~~~vlmvQkEvA~Rl~  163 (284)
                      ... .   ..+-.|+-+.++..-..++..+.... .|- ..-++.....|-++++.
T Consensus       103 ~~~-~---~~~D~i~i~~~~~~~~~~l~~~~~~L-~pG-G~lvi~~~~~e~~~~~~  152 (204)
T 3e05_A          103 LDD-L---PDPDRVFIGGSGGMLEEIIDAVDRRL-KSE-GVIVLNAVTLDTLTKAV  152 (204)
T ss_dssp             CTT-S---CCCSEEEESCCTTCHHHHHHHHHHHC-CTT-CEEEEEECBHHHHHHHH
T ss_pred             CCC-C---CCCCEEEECCCCCCHHHHHHHHHHHC-CCC-CEEEEEEECHHHHHHHH
T ss_conf             543-5---78769999065523589999999854-899-89999963487899999


No 35 
>2yxe_A Protein-L-isoaspartate O-methyltransferase; rossman-type fold, alpha/beta/alpha sandwich structure, structural genomics; 2.00A {Methanocaldococcus jannaschii DSM2661}
Probab=98.77  E-value=1.9e-08  Score=71.47  Aligned_cols=82  Identities=18%  Similarity=0.226  Sum_probs=68.6

Q ss_pred             CCCCCCCCHHHHHHHHHHCCCCCCCEEEEECCCCCHHHHHHHHCCC--CEEEEECCCCCCHHHHHHHHHHHH-CCCCCCH
Q ss_conf             5841123989999999971989998799975898823467750235--259984255430368878753220-0122000
Q gi|254780398|r   25 MGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGA--RKVIVIEKDQQFFPILKDISSQHP-NRLEIIQ  101 (284)
Q Consensus        25 lGQnFL~d~~i~~~iv~~~~~~~~~~VlEIGpG~G~LT~~Ll~~~~--~~v~aiEiD~~~~~~l~~~~~~~~-~~~~ii~  101 (284)
                      .|| ++..+.+..++.+.+++.+++.|||||+|+|.+|..+++...  ..|+++|+|+.+++..++.+.... .++.+++
T Consensus        56 ~~~-~i~~P~~~a~~l~~l~l~~g~~VLeIGtGsGY~ta~la~l~g~~g~V~~iE~~~~l~~~a~~~l~~~~~~nv~~~~  134 (215)
T 2yxe_A           56 YGQ-TISAIHMVGMMCELLDLKPGMKVLEIGTGCGYHAAVTAEIVGEDGLVVSIERIPELAEKAERTLRKLGYDNVIVIV  134 (215)
T ss_dssp             TTE-EECCHHHHHHHHHHTTCCTTCEEEEECCTTSHHHHHHHHHHCTTSEEEEEESCHHHHHHHHHHHHHHTCTTEEEEE
T ss_pred             CCC-CCCCHHHHHHHHHHHCCCCCCEEEEECCCCCHHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHCCCCCEEEEE
T ss_conf             886-1287799999998635899988998278841999999998488871899952889999999999861566449998


Q ss_pred             HHHCCC
Q ss_conf             000014
Q gi|254780398|r  102 DDALKV  107 (284)
Q Consensus       102 ~Dal~~  107 (284)
                      ||...-
T Consensus       135 gd~~~g  140 (215)
T 2yxe_A          135 GDGTLG  140 (215)
T ss_dssp             SCGGGC
T ss_pred             CCCCCC
T ss_conf             886557


No 36 
>3fpf_A Mtnas, putative uncharacterized protein; thermonicotianamine, nicotianamine, biosynthetic protein, transferase; HET: TNA MTA; 1.66A {Methanothermobacterthermautotrophicus} PDB: 3fpe_A* 3fph_A* 3fpg_A* 3fpj_A*
Probab=98.77  E-value=1.6e-08  Score=71.87  Aligned_cols=101  Identities=24%  Similarity=0.271  Sum_probs=73.2

Q ss_pred             HHHHHHHHHHCCCCCCCEEEEECCCCCHHHHHHHHCCCC-EEEEECCCCCCHHHHHHHHHHHH-CCCCCCHHHHCCCCHH
Q ss_conf             899999999719899987999758988234677502352-59984255430368878753220-0122000000014315
Q gi|254780398|r   33 LNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGAR-KVIVIEKDQQFFPILKDISSQHP-NRLEIIQDDALKVDFE  110 (284)
Q Consensus        33 ~~i~~~iv~~~~~~~~~~VlEIGpG~G~LT~~Ll~~~~~-~v~aiEiD~~~~~~l~~~~~~~~-~~~~ii~~Dal~~d~~  110 (284)
                      ..+++...+.+.+.+++.||+||||+|.+|..++++.+. +|++||+|+.+++.+++...... .+++++++|+..++..
T Consensus       108 ~~l~~~e~~~~~l~~g~rVLdiGcG~g~~t~~~~a~~~g~~V~gIDisp~~~~~Ar~~~~~~g~~~v~~~~gD~~~l~~~  187 (298)
T 3fpf_A          108 LELLKNEAALGRFRRGERAVFIGGGPLPLTGILLSHVYGMRVNVVEIEPDIAELSRKVIEGLGVDGVNVITGDETVIDGL  187 (298)
T ss_dssp             HHHHHHHHHHTTCCTTCEEEEECCCSSCHHHHHHHHTTCCEEEEEESSHHHHHHHHHHHHHHTCCSEEEEESCGGGGGGC
T ss_pred             HHHHHHHHHHCCCCCCCEEEEEECCCHHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHCCCCEEEEEECCCCCCCCC
T ss_conf             99999999854899999899960685699999998568998999969999999999979864995089997355447899


Q ss_pred             HHCCCCCCEEEEECCCHHHHHHHHHHHHH
Q ss_conf             52133222011202322467889999985
Q gi|254780398|r  111 KFFNISSPIRIIANLPYNIGTRLLFNWIS  139 (284)
Q Consensus       111 ~~~~~~~~~~vvgNLPYnIss~Il~~ll~  139 (284)
                      ++.     ..+++.+...- .+++..+..
T Consensus       188 ~fD-----vV~va~~v~~~-~~vl~~l~r  210 (298)
T 3fpf_A          188 EFD-----VLMVAALAEPK-RRVFRNIHR  210 (298)
T ss_dssp             CCS-----EEEECTTCSCH-HHHHHHHHH
T ss_pred             CCC-----EEEECCCCCCH-HHHHHHHHH
T ss_conf             989-----89989877379-999999998


No 37 
>3b3f_A Histone-arginine methyltransferase CARM1; protein arginine methyltransferase, catalytic domain, alternative splicing, chromatin regulator; HET: SAH; 2.20A {Rattus norvegicus} PDB: 3b3g_A 2v74_B* 2v7e_A
Probab=98.76  E-value=1.2e-08  Score=72.81  Aligned_cols=94  Identities=19%  Similarity=0.329  Sum_probs=69.1

Q ss_pred             HHHHCCCCCCCCCCCCC--CCCHHHHHH----HHHHCCCCCCCEEEEECCCCCHHHHHHHHCCCCEEEEECCCCCCHHHH
Q ss_conf             99981898433658411--239899999----999719899987999758988234677502352599842554303688
Q gi|254780398|r   13 ILSHYKIIPKKYMGQNF--LLDLNILKK----IAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPIL   86 (284)
Q Consensus        13 ll~~~~~~p~k~lGQnF--L~d~~i~~~----iv~~~~~~~~~~VlEIGpG~G~LT~~Ll~~~~~~v~aiEiD~~~~~~l   86 (284)
                      ..+.|+     .+++|+  |.|..-.+.    |.+.....+++.|||||+|+|.|+..+++.+|++|+++|.++ ++..+
T Consensus        11 y~~~y~-----~~~~h~~ml~D~~r~~~y~~ai~~~~~~~~~~~VLDiGcG~G~ls~~aa~~Ga~~V~~~e~s~-~~~~~   84 (341)
T 3b3f_A           11 YFQFYG-----YLSQQQNMMQDYVRTGTYQRAILQNHTDFKDKIVLDVGCGSGILSFFAAQAGARKIYAVEAST-MAQHA   84 (341)
T ss_dssp             HHHHHT-----CHHHHHHHHHCHHHHHHHHHHHHHTGGGTTTCEEEEESCTTSHHHHHHHHTTCSEEEEEECST-HHHHH
T ss_pred             HHHHHC-----CHHHHHHHHCCHHHHHHHHHHHHHCHHHCCCCEEEEECCCCCHHHHHHHHCCCCEEEEEECCH-HHHHH
T ss_conf             987650-----408899885873658999999985642259798999666853999999976999899997909-99999


Q ss_pred             HHHHHH--HHCCCCCCHHHHCCCCHHHH
Q ss_conf             787532--20012200000001431552
Q gi|254780398|r   87 KDISSQ--HPNRLEIIQDDALKVDFEKF  112 (284)
Q Consensus        87 ~~~~~~--~~~~~~ii~~Dal~~d~~~~  112 (284)
                      ++....  ..++++++++|+.++++++-
T Consensus        85 ~~~~~~n~~~~~I~~i~~~~~~l~l~~~  112 (341)
T 3b3f_A           85 EVLVKSNNLTDRIVVIPGKVEEVSLPEQ  112 (341)
T ss_dssp             HHHHHHTTCTTTEEEEESCTTTCCCSSC
T ss_pred             HHHHHHCCCCCCCEEEEEEHHHCCCCCC
T ss_conf             9999985998640079603665256766


No 38 
>2pwy_A TRNA (adenine-N(1)-)-methyltransferase; mtase, adoMet, TRMI, tRNA-M1A58; HET: SAH; 1.70A {Thermus thermophilus HB27}
Probab=98.75  E-value=2.4e-08  Score=70.84  Aligned_cols=93  Identities=14%  Similarity=0.069  Sum_probs=71.5

Q ss_pred             CCHHHHHHHHHHCCCCCCCEEEEECCCCCHHHHHHHHCC-C-CEEEEECCCCCCHHHHHHHHHHH--HCCCCCCHHHHCC
Q ss_conf             398999999997198999879997589882346775023-5-25998425543036887875322--0012200000001
Q gi|254780398|r   31 LDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLG-A-RKVIVIEKDQQFFPILKDISSQH--PNRLEIIQDDALK  106 (284)
Q Consensus        31 ~d~~i~~~iv~~~~~~~~~~VlEIGpG~G~LT~~Ll~~~-~-~~v~aiEiD~~~~~~l~~~~~~~--~~~~~ii~~Dal~  106 (284)
                      +=+.-+..|+..+++.+++.|||+|+|.|++|..|++.. + .+|+++|+++.+++.+++++..+  .++++++.+|+.+
T Consensus        80 iyp~d~~~Ii~~l~i~pG~~VLEiG~GsG~lt~~lA~~v~~~g~V~~~d~~~~~~~~A~~n~~~~~~~~~v~~~~~d~~~  159 (258)
T 2pwy_A           80 TYPKDASAMVTLLDLAPGMRVLEAGTGSGGLTLFLARAVGEKGLVESYEARPHHLAQAERNVRAFWQVENVRFHLGKLEE  159 (258)
T ss_dssp             CCHHHHHHHHHHTTCCTTCEEEEECCTTSHHHHHHHHHHCTTSEEEEEESCHHHHHHHHHHHHHHCCCCCEEEEESCGGG
T ss_pred             CCHHHHHHHHHHCCCCCCCEEEECCCCHHHHHHHHHHHCCCCCEEEEEECCHHHHHHHHHHHHHCCCCCCEEEEECCHHH
T ss_conf             47799999999719899999998777067999999997288738999848999999999999980899855688365788


Q ss_pred             CCHHHHCCCCCCEEEEECCCH
Q ss_conf             431552133222011202322
Q gi|254780398|r  107 VDFEKFFNISSPIRIIANLPY  127 (284)
Q Consensus       107 ~d~~~~~~~~~~~~vvgNLPY  127 (284)
                      .++++..    --.|+-.+|-
T Consensus       160 ~~~~~~~----~d~v~ld~p~  176 (258)
T 2pwy_A          160 AELEEAA----YDGVALDLME  176 (258)
T ss_dssp             CCCCTTC----EEEEEEESSC
T ss_pred             CCCCCCC----CCEEEECCCC
T ss_conf             5555643----2389964889


No 39 
>1vl5_A Unknown conserved protein BH2331; 10174951, hypothetical protein, structural genomics, JCSG, protein structure initiative, PSI; HET: MSE; 1.95A {Bacillus halodurans c-125} SCOP: c.66.1.41
Probab=98.75  E-value=1.5e-08  Score=72.11  Aligned_cols=91  Identities=14%  Similarity=0.234  Sum_probs=69.7

Q ss_pred             HHHHHHHCCCCCCCEEEEECCCCCHHHHHHHHCCCCEEEEECCCCCCHHHHHHHHHHHH-CCCCCCHHHHCCCCHHHHCC
Q ss_conf             99999971989998799975898823467750235259984255430368878753220-01220000000143155213
Q gi|254780398|r   36 LKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQHP-NRLEIIQDDALKVDFEKFFN  114 (284)
Q Consensus        36 ~~~iv~~~~~~~~~~VlEIGpG~G~LT~~Ll~~~~~~v~aiEiD~~~~~~l~~~~~~~~-~~~~ii~~Dal~~d~~~~~~  114 (284)
                      .+++++.+++.+++.|||||||+|.+|..+++.++ +|+++|+.+.++..+++...... .+++++.+|+.+.++++-  
T Consensus        26 ~~~l~~~~~l~~~~~VLDiGcG~G~~~~~la~~~~-~v~g~D~s~~~~~~a~~~~~~~g~~~i~~~~~d~~~l~~~~~--  102 (260)
T 1vl5_A           26 LAKLMQIAALKGNEEVLDVATGGGHVANAFAPFVK-KVVAFDLTEDILKVARAFIEGNGHQQVEYVQGDAEQMPFTDE--  102 (260)
T ss_dssp             HHHHHHHHTCCSCCEEEEETCTTCHHHHHHGGGSS-EEEEEESCHHHHHHHHHHHHHTTCCSEEEEECCC-CCCSCTT--
T ss_pred             HHHHHHHCCCCCCCEEEEECCCCCHHHHHHHHHCC-EEEEEECCHHHHHHHHHCCCCCCCCCCEEEECCCCCCCCCCC--
T ss_conf             99999960899929999954647199999997299-699998999999986612222456652477511235787778--


Q ss_pred             CCCCEEEEECCCHHHH
Q ss_conf             3222011202322467
Q gi|254780398|r  115 ISSPIRIIANLPYNIG  130 (284)
Q Consensus       115 ~~~~~~vvgNLPYnIs  130 (284)
                       .-...+..+.-.++.
T Consensus       103 -sfD~V~~~~~l~h~~  117 (260)
T 1vl5_A          103 -RFHIVTCRIAAHHFP  117 (260)
T ss_dssp             -CEEEEEEESCGGGCS
T ss_pred             -CEEEEEEECCHHHCC
T ss_conf             -557998702255268


No 40 
>3gnl_A Uncharacterized protein, DUF633, LMOF2365_1472; structural genomics, PSI-2, protein structure initiative; 1.50A {Listeria monocytogenes str}
Probab=98.75  E-value=1.6e-07  Score=65.74  Aligned_cols=97  Identities=14%  Similarity=0.087  Sum_probs=72.1

Q ss_pred             HHHHHHCCCCCCCEEEEECCCCCHHHHHHHHCCC-CEEEEECCCCCCHHHHHHHHHHH--HCCCCCCHHHHCCCCHHHHC
Q ss_conf             9999971989998799975898823467750235-25998425543036887875322--00122000000014315521
Q gi|254780398|r   37 KKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGA-RKVIVIEKDQQFFPILKDISSQH--PNRLEIIQDDALKVDFEKFF  113 (284)
Q Consensus        37 ~~iv~~~~~~~~~~VlEIGpG~G~LT~~Ll~~~~-~~v~aiEiD~~~~~~l~~~~~~~--~~~~~ii~~Dal~~d~~~~~  113 (284)
                      ..|++.+  .+++.|++||||.|.|+..|++.+. .+|+|+|+++..++.+++....+  .++++++.+|++....... 
T Consensus        13 ~~ia~~v--~~g~~vlDiGcg~G~l~~~l~~~~~~~~V~avDi~~~~l~~A~~n~~~~gl~~~I~~~~~D~~~~~~~~~-   89 (244)
T 3gnl_A           13 EKVASYI--TKNERIADIGSDHAYLPCFAVKNQTASFAIAGEVVDGPFQSAQKQVRSSGLTEQIDVRKGNGLAVIEKKD-   89 (244)
T ss_dssp             HHHHTTC--CSSEEEEEETCSTTHHHHHHHHTTSEEEEEEEESSHHHHHHHHHHHHHTTCTTTEEEEECSGGGGCCGGG-
T ss_pred             HHHHHHC--CCCCEEEEECCCHHHHHHHHHHCCCCCEEEEEECCHHHHHHHHHHHHHCCCCCCEEEEECCCHHHHCCCC-
T ss_conf             9999658--9999899971864899999998099988999638899999999999982999867999887504321557-


Q ss_pred             CCCCCEEEEECCCHHHHHHHHHHHH
Q ss_conf             3322201120232246788999998
Q gi|254780398|r  114 NISSPIRIIANLPYNIGTRLLFNWI  138 (284)
Q Consensus       114 ~~~~~~~vvgNLPYnIss~Il~~ll  138 (284)
                        .....+++..++..-..|+....
T Consensus        90 --~~d~~viag~g~~~i~~il~~~~  112 (244)
T 3gnl_A           90 --AIDTIVIAGMGGTLIRTILEEGA  112 (244)
T ss_dssp             --CCCEEEEEEECHHHHHHHHHHTG
T ss_pred             --CCCEEEECCCCHHHHHHHHHHHH
T ss_conf             --87689984888899999999989


No 41 
>3mb5_A SAM-dependent methyltransferase; RNA methyltransferase, M1A, TRMI, intermolecular contacts, R specificity, tetramer, disulfide bond; HET: SAM; 1.60A {Pyrococcus abyssi} PDB: 3lga_A* 3lhd_C*
Probab=98.73  E-value=3.7e-08  Score=69.70  Aligned_cols=94  Identities=21%  Similarity=0.251  Sum_probs=73.2

Q ss_pred             CCCHHHHHHHHHHCCCCCCCEEEEECCCCCHHHHHHHHCC-CC-EEEEECCCCCCHHHHHHHHHH--HHCCCCCCHHHHC
Q ss_conf             2398999999997198999879997589882346775023-52-599842554303688787532--2001220000000
Q gi|254780398|r   30 LLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLG-AR-KVIVIEKDQQFFPILKDISSQ--HPNRLEIIQDDAL  105 (284)
Q Consensus        30 L~d~~i~~~iv~~~~~~~~~~VlEIGpG~G~LT~~Ll~~~-~~-~v~aiEiD~~~~~~l~~~~~~--~~~~~~ii~~Dal  105 (284)
                      .+-+.-+..|+..+++.+++.|||+|+|.|.+|..|++.. +. +|+++|+++.+++.+++.+..  ..+++++..+|+.
T Consensus        76 iiyp~d~~~Ii~~l~i~pG~rVLd~G~GsG~lt~~lar~~~~~G~V~~~D~~~~~~~~A~~n~~~~gl~~~v~~~~~D~~  155 (255)
T 3mb5_A           76 IVHPKDAALIVAYAGISPGDFIVEAGVGSGALTLFLANIVGPEGRVVSYEIREDFAKLAWENIKWAGFDDRVTIKLKDIY  155 (255)
T ss_dssp             CCCHHHHHHHHHHTTCCTTCEEEEECCTTSHHHHHHHHHHCTTSEEEEECSCHHHHHHHHHHHHHHTCTTTEEEECSCGG
T ss_pred             CCCHHHHHHHHHHHCCCCCCEEEECCCCCHHHHHHHHHHCCCCCEEEEECCCHHHHHHHHHHHHHCCCCEEEEEEECCHH
T ss_conf             65889999999971989899899888662799999997438897799834999999999999997199814999946110


Q ss_pred             CCCHHHHCCCCCCEEEEECCCHH
Q ss_conf             14315521332220112023224
Q gi|254780398|r  106 KVDFEKFFNISSPIRIIANLPYN  128 (284)
Q Consensus       106 ~~d~~~~~~~~~~~~vvgNLPYn  128 (284)
                      ....+.     .-..|+-++|--
T Consensus       156 ~~~~~~-----~~D~V~ld~p~p  173 (255)
T 3mb5_A          156 EGIEEE-----NVDHVILDLPQP  173 (255)
T ss_dssp             GCCCCC-----SEEEEEECSSCG
T ss_pred             CCCCCC-----CCCEEEEECCCH
T ss_conf             355556-----565799966856


No 42 
>1o54_A SAM-dependent O-methyltransferase; TM0748, structural genomics, JCSG, PSI, protein structure initiative; 1.65A {Thermotoga maritima} SCOP: c.66.1.13
Probab=98.73  E-value=4.5e-08  Score=69.18  Aligned_cols=93  Identities=19%  Similarity=0.188  Sum_probs=71.2

Q ss_pred             CCCHHHHHHHHHHCCCCCCCEEEEECCCCCHHHHHHHHCC-C-CEEEEECCCCCCHHHHHHHHHHH--HCCCCCCHHHHC
Q ss_conf             2398999999997198999879997589882346775023-5-25998425543036887875322--001220000000
Q gi|254780398|r   30 LLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLG-A-RKVIVIEKDQQFFPILKDISSQH--PNRLEIIQDDAL  105 (284)
Q Consensus        30 L~d~~i~~~iv~~~~~~~~~~VlEIGpG~G~LT~~Ll~~~-~-~~v~aiEiD~~~~~~l~~~~~~~--~~~~~ii~~Dal  105 (284)
                      .+-+.-+..|+..+++.+++.|||+|+|.|.+|..|++.. + .+|+++|+++.+++.+++++..+  .+++++.++|+.
T Consensus        95 iiypkD~~~Ii~~ldi~pG~~VLDiG~GsG~lt~~lA~~v~~~g~V~~~D~~~~~~~~A~~n~~~~gl~~~v~~~~~D~~  174 (277)
T 1o54_A           95 IVYPKDSSFIAMMLDVKEGDRIIDTGVGSGAMCAVLARAVGSSGKVFAYEKREEFAKLAESNLTKWGLIERVTIKVRDIS  174 (277)
T ss_dssp             CCCHHHHHHHHHHTTCCTTCEEEEECCTTSHHHHHHHHHTTTTCEEEEECCCHHHHHHHHHHHHHTTCGGGEEEECCCGG
T ss_pred             CCCHHHHHHHHHHHCCCCCCEEEECCCCCHHHHHHHHHHCCCCEEEEEEECCHHHHHHHHHHHHHCCCCCCEEEEECCCC
T ss_conf             26889999999980899999899768882799999998518980999996889999999998997499876799968622


Q ss_pred             CCCHHHHCCCCCCEEEEECCCH
Q ss_conf             1431552133222011202322
Q gi|254780398|r  106 KVDFEKFFNISSPIRIIANLPY  127 (284)
Q Consensus       106 ~~d~~~~~~~~~~~~vvgNLPY  127 (284)
                      +....     ..--.|+-++|-
T Consensus       175 ~~~~~-----~~~D~V~ld~p~  191 (277)
T 1o54_A          175 EGFDE-----KDVDALFLDVPD  191 (277)
T ss_dssp             GCCSC-----CSEEEEEECCSC
T ss_pred             CCCCC-----CCCCEEECCCCC
T ss_conf             44444-----454102217899


No 43 
>3gdh_A Trimethylguanosine synthase homolog; M7G, CAP, dimethyltransferase, usnRNA, snoRNA, telomerase, cytoplasm, methyltransferase, nucleus; HET: MGP SAH; 2.00A {Homo sapiens} PDB: 3egi_A*
Probab=98.72  E-value=1e-08  Score=73.10  Aligned_cols=93  Identities=19%  Similarity=0.185  Sum_probs=71.1

Q ss_pred             CCHHHHHHHHHHC-CCCCCCEEEEECCCCCHHHHHHHHCCCCEEEEECCCCCCHHHHHHHHHHH--HCCCCCCHHHHCCC
Q ss_conf             3989999999971-98999879997589882346775023525998425543036887875322--00122000000014
Q gi|254780398|r   31 LDLNILKKIAESS-GSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQH--PNRLEIIQDDALKV  107 (284)
Q Consensus        31 ~d~~i~~~iv~~~-~~~~~~~VlEIGpG~G~LT~~Ll~~~~~~v~aiEiD~~~~~~l~~~~~~~--~~~~~ii~~Dal~~  107 (284)
                      +.+.++..+++.+ ...+++.||++|||.|..|..+++.++ +|++||+++..++.+++.....  .++++++++|++++
T Consensus        61 tpe~ia~~ia~~~~~~~~~~~vlD~gcG~G~~~~~la~~~~-~v~~iD~s~~~i~~a~~n~~~~~~~~~i~~~~~D~~~~  139 (241)
T 3gdh_A           61 TPEKIAEHIAGRVSQSFKCDVVVDAFCGVGGNTIQFALTGM-RVIAIDIDPVKIALARNNAEVYGIADKIEFICGDFLLL  139 (241)
T ss_dssp             CCHHHHHHHHHHHHHHSCCSEEEETTCTTSHHHHHHHHTTC-EEEEEESCHHHHHHHHHHHHHTTCGGGEEEEESCHHHH
T ss_pred             CHHHHHHHHHHHHHHCCCCCEEEECCCCCCHHHHHHHHCCC-EEEEEECCHHHHHHHHHHHHHCCCCCCEEEEECCHHHH
T ss_conf             86999999999865028999899937873688999996799-89999897788899999999849987439997648664


Q ss_pred             CHHHHCCCCCCEEEEECCCHHH
Q ss_conf             3155213322201120232246
Q gi|254780398|r  108 DFEKFFNISSPIRIIANLPYNI  129 (284)
Q Consensus       108 d~~~~~~~~~~~~vvgNLPYnI  129 (284)
                      ...     ...-.|+.+.||.-
T Consensus       140 ~~~-----~~~D~i~~~pp~~~  156 (241)
T 3gdh_A          140 ASF-----LKADVVFLSPPWGG  156 (241)
T ss_dssp             GGG-----CCCSEEEECCCCSS
T ss_pred             HHC-----CCCEEEEECCCCCC
T ss_conf             143-----78449998378788


No 44 
>2p8j_A S-adenosylmethionine-dependent methyltransferase; NP_349143.1, methyltransferase domain, structural genomics; HET: PGE GOL; 2.00A {Clostridium acetobutylicum}
Probab=98.72  E-value=1.9e-08  Score=71.54  Aligned_cols=85  Identities=18%  Similarity=0.185  Sum_probs=63.3

Q ss_pred             CCCCCCHHHHHHHHHHCCCCCCCEEEEECCCCCHHHHHHHHCCCCEEEEECCCCCCHHHHHHHHHHHHCCCCCCHHHHCC
Q ss_conf             41123989999999971989998799975898823467750235259984255430368878753220012200000001
Q gi|254780398|r   27 QNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALK  106 (284)
Q Consensus        27 QnFL~d~~i~~~iv~~~~~~~~~~VlEIGpG~G~LT~~Ll~~~~~~v~aiEiD~~~~~~l~~~~~~~~~~~~ii~~Dal~  106 (284)
                      |-++..+.+.+-+-..-....+..|||+|||.|..|..++.+...+|+++|+++.+++.+++......-+++++++|+.+
T Consensus         3 ~~~~~~~~l~r~l~~~~~~~~~~~VLDiGcG~G~~~~~~~~~~~~~v~gvD~S~~~i~~a~~~~~~~~~~v~~~~~d~~~   82 (209)
T 2p8j_A            3 KTIIRQPQLYRFLKYCNESNLDKTVLDCGAGGDLPPLSIFVEDGYKTYGIEISDLQLKKAENFSRENNFKLNISKGDIRK   82 (209)
T ss_dssp             CCCCSCTHHHHHHHHHHHSSSCSEEEEESCCSSSCTHHHHHHTTCEEEEEECCHHHHHHHHHHHHHHTCCCCEEECCTTS
T ss_pred             HHHHHHHHHHHHHHHHCCCCCCCEEEEEECCCCHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHCCCCEEEEECCEEEC
T ss_conf             45564289999999730106989899972788999999998589989999597999999986220357436530020223


Q ss_pred             CCHHH
Q ss_conf             43155
Q gi|254780398|r  107 VDFEK  111 (284)
Q Consensus       107 ~d~~~  111 (284)
                      +++++
T Consensus        83 l~~~~   87 (209)
T 2p8j_A           83 LPFKD   87 (209)
T ss_dssp             CCSCT
T ss_pred             CCCCC
T ss_conf             68543


No 45 
>3ccf_A Cyclopropane-fatty-acyl-phospholipid synthase; YP_321342.1, putative methyltransferase, structural genomics; 1.90A {Anabaena variabilis atcc 29413}
Probab=98.71  E-value=1.6e-08  Score=72.00  Aligned_cols=70  Identities=19%  Similarity=0.312  Sum_probs=58.4

Q ss_pred             HHHHHHCCCCCCCEEEEECCCCCHHHHHHHHCCCCEEEEECCCCCCHHHHHHHHHHHHCCCCCCHHHHCCCCHHH
Q ss_conf             999997198999879997589882346775023525998425543036887875322001220000000143155
Q gi|254780398|r   37 KKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEK  111 (284)
Q Consensus        37 ~~iv~~~~~~~~~~VlEIGpG~G~LT~~Ll~~~~~~v~aiEiD~~~~~~l~~~~~~~~~~~~ii~~Dal~~d~~~  111 (284)
                      +++++.+++.+++.|||||||+|.+|..|+++++ +|++||+++.+++.+++.+.    ++++..+|+..+++++
T Consensus        47 ~~ll~~l~~~~g~~VLDiGcG~G~~~~~la~~~~-~v~giD~s~~ml~~a~~~~~----~~~~~~~~~~~~~~~~  116 (279)
T 3ccf_A           47 EDLLQLLNPQPGEFILDLGCGTGQLTEKIAQSGA-EVLGTDNAATMIEKARQNYP----HLHFDVADARNFRVDK  116 (279)
T ss_dssp             CHHHHHHCCCTTCEEEEETCTTSHHHHHHHHTTC-EEEEEESCHHHHHHHHHHCT----TSCEEECCTTTCCCSS
T ss_pred             HHHHHCCCCCCCCEEEEECCCCCHHHHHHHHCCC-EEEEEECHHHHHHHHHHHCC----CCCEEEHHHCCCCCCC
T ss_conf             9999706999969999935858599999996499-89999163889999986165----4311100000135676


No 46 
>2frn_A Hypothetical protein PH0793; structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; 2.10A {Pyrococcus horikoshii OT3} SCOP: c.66.1.47 PDB: 3k6r_A 3a25_A* 3a26_A*
Probab=98.71  E-value=1e-08  Score=73.18  Aligned_cols=85  Identities=25%  Similarity=0.261  Sum_probs=67.5

Q ss_pred             HHHHHHCCCCCCCEEEEECCCCCHHHHHHHHCCCCEEEEECCCCCCHHHHHHHHHH--HHCCCCCCHHHHCCCCHHHHCC
Q ss_conf             99999719899987999758988234677502352599842554303688787532--2001220000000143155213
Q gi|254780398|r   37 KKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQ--HPNRLEIIQDDALKVDFEKFFN  114 (284)
Q Consensus        37 ~~iv~~~~~~~~~~VlEIGpG~G~LT~~Ll~~~~~~v~aiEiD~~~~~~l~~~~~~--~~~~~~ii~~Dal~~d~~~~~~  114 (284)
                      .++++.  ..+++.||++|+|.|.+|..+++.++.+|+|+|+++..++.++++...  ..++++++++|+.++....   
T Consensus       117 ~rl~~~--~~~g~~VlDl~aG~G~~~l~~a~~~~~~V~avD~n~~a~~~~~~N~~~n~~~~~v~~~~~D~~~~~~~~---  191 (278)
T 2frn_A          117 VRMAKV--AKPDELVVDMFAGIGHLSLPIAVYGKAKVIAIEKDPYTFKFLVENIHLNKVEDRMSAYNMDNRDFPGEN---  191 (278)
T ss_dssp             HHHHHH--CCTTCEEEETTCTTTTTHHHHHHHTCCEEEEECCCHHHHHHHHHHHHHTTCTTTEEEECSCTTTCCCCS---
T ss_pred             HHHHHH--CCCCCEEEECCCCCCHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHHHCCCCCEEEEECCHHHHCCCC---
T ss_conf             999965--369988999177051999999997498699997999999999999998099984899968199944666---


Q ss_pred             CCCCEEEEECCCHH
Q ss_conf             32220112023224
Q gi|254780398|r  115 ISSPIRIIANLPYN  128 (284)
Q Consensus       115 ~~~~~~vvgNLPYn  128 (284)
                        .--+|+.|+|+.
T Consensus       192 --~~D~Vim~~p~~  203 (278)
T 2frn_A          192 --IADRILMGYVVR  203 (278)
T ss_dssp             --CEEEEEECCCSS
T ss_pred             --CCCEEEECCCCC
T ss_conf             --886999899852


No 47 
>3ege_A Putative methyltransferase from antibiotic biosynthesis pathway; YP_324569.1, structural genomics; 2.40A {Anabaena variabilis atcc 29413}
Probab=98.71  E-value=1.1e-08  Score=72.94  Aligned_cols=87  Identities=23%  Similarity=0.276  Sum_probs=68.1

Q ss_pred             CCHHHHHHHHHHCCCCCCCEEEEECCCCCHHHHHHHHCCCCEEEEECCCCCCHHHHHHHHHHHHCCCCCCHHHHCCCCHH
Q ss_conf             39899999999719899987999758988234677502352599842554303688787532200122000000014315
Q gi|254780398|r   31 LDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFE  110 (284)
Q Consensus        31 ~d~~i~~~iv~~~~~~~~~~VlEIGpG~G~LT~~Ll~~~~~~v~aiEiD~~~~~~l~~~~~~~~~~~~ii~~Dal~~d~~  110 (284)
                      .++.+++++++.+++.+++.|||||||+|.+|..|+++++ +|++||+++.+++.++    ..+ +++++.+|+.+++++
T Consensus        18 ~~~~~~~~~~~~l~l~~~~~vLDvGcG~G~~~~~l~~~~~-~v~gvD~s~~~~~~a~----~~~-~~~~~~~d~~~l~~~   91 (261)
T 3ege_A           18 PDIRIVNAIINLLNLPKGSVIADIGAGTGGYSVALANQGL-FVYAVEPSIVMRQQAV----VHP-QVEWFTGYAENLALP   91 (261)
T ss_dssp             CCHHHHHHHHHHHCCCTTCEEEEETCTTSHHHHHHHTTTC-EEEEECSCHHHHHSSC----CCT-TEEEECCCTTSCCSC
T ss_pred             CCHHHHHHHHHHCCCCCCCEEEEECCCCCHHHHHHHHCCC-EEEEEECCCCCCCCCC----CCC-CHHHHHHHHHHCCCC
T ss_conf             8889999999965999969999964888899999997699-8999974453121000----122-101333445430256


Q ss_pred             HHCCCCCCEEEEECCCH
Q ss_conf             52133222011202322
Q gi|254780398|r  111 KFFNISSPIRIIANLPY  127 (284)
Q Consensus       111 ~~~~~~~~~~vvgNLPY  127 (284)
                      +-   .-. .|+++-..
T Consensus        92 ~~---~fD-~v~~~~~l  104 (261)
T 3ege_A           92 DK---SVD-GVISILAI  104 (261)
T ss_dssp             TT---CBS-EEEEESCG
T ss_pred             CC---CCC-EEEECCHH
T ss_conf             76---013-77540127


No 48 
>2fhp_A Methylase, putative; alpha-beta-alpha sandwich, structural genomics, PSI, protein structure initiative; HET: MSE; 1.60A {Enterococcus faecalis V583} SCOP: c.66.1.46
Probab=98.71  E-value=6.3e-08  Score=68.25  Aligned_cols=109  Identities=21%  Similarity=0.338  Sum_probs=80.6

Q ss_pred             CHHHHHHHHHHCC-CCCCCEEEEECCCCCHHHHHHHHCCCCEEEEECCCCCCHHHHHHHHHHH--HCCCCCCHHHHCCCC
Q ss_conf             9899999999719-8999879997589882346775023525998425543036887875322--001220000000143
Q gi|254780398|r   32 DLNILKKIAESSG-SLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQH--PNRLEIIQDDALKVD  108 (284)
Q Consensus        32 d~~i~~~iv~~~~-~~~~~~VlEIGpG~G~LT~~Ll~~~~~~v~aiEiD~~~~~~l~~~~~~~--~~~~~ii~~Dal~~d  108 (284)
                      ...+-+.+...++ ..++..||++++|+|+++.+.+.+||++|++||.|+..+..+++.....  .++++++++|+.++ 
T Consensus        28 ~~~vrealfn~l~~~~~~~~vLDlf~GsG~~~~ea~srGa~~v~~Ve~~~~~~~~~~~N~~~~~~~~~~~i~~~d~~~~-  106 (187)
T 2fhp_A           28 TDKVKESIFNMIGPYFDGGMALDLYSGSGGLAIEAVSRGMDKSICIEKNFAALKVIKENIAITKEPEKFEVRKMDANRA-  106 (187)
T ss_dssp             CHHHHHHHHHHHCSCCSSCEEEETTCTTCHHHHHHHHTTCSEEEEEESCHHHHHHHHHHHHHHTCGGGEEEEESCHHHH-
T ss_pred             CHHHHHHHHHHHHHHCCCCEEEECCCCCCHHHHHHHHCCCCEEEEEEECHHHHHHHHHHHHHCCCCCCCEEEEEEHHHH-
T ss_conf             1899999999865115999899988873789999997588835899942467767665554202456417886107888-


Q ss_pred             HHHHCCCCCCE-EEEECCCHHH--HHHHHHHHHHHH
Q ss_conf             15521332220-1120232246--788999998520
Q gi|254780398|r  109 FEKFFNISSPI-RIIANLPYNI--GTRLLFNWISAD  141 (284)
Q Consensus       109 ~~~~~~~~~~~-~vvgNLPYnI--ss~Il~~ll~~~  141 (284)
                      +..+...+.++ .|+-+.||+-  -..++..+.+..
T Consensus       107 l~~~~~~~~~fDlIflDPPY~~~~~~~~l~~i~~~~  142 (187)
T 2fhp_A          107 LEQFYEEKLQFDLVLLDPPYAKQEIVSQLEKMLERQ  142 (187)
T ss_dssp             HHHHHHTTCCEEEEEECCCGGGCCHHHHHHHHHHTT
T ss_pred             HHHHHHCCCCCCEEEECCCCCCHHHHHHHHHHHHCC
T ss_conf             776430267653599789875317999999999879


No 49 
>2pbf_A Protein-L-isoaspartate O-methyltransferase beta- aspartate methyltransferase; protein repair, isoaspartyl formation, P. falciparum; HET: SAH; 2.00A {Plasmodium falciparum 3D7}
Probab=98.71  E-value=5.3e-08  Score=68.71  Aligned_cols=85  Identities=18%  Similarity=0.207  Sum_probs=66.3

Q ss_pred             CCCCCCCCHHHHHHHHHHC--CCCCCCEEEEECCCCCHHHHHHHHC------CCCEEEEECCCCCCHHHHHHHHHHH---
Q ss_conf             5841123989999999971--9899987999758988234677502------3525998425543036887875322---
Q gi|254780398|r   25 MGQNFLLDLNILKKIAESS--GSLDGITVIEIGAGPGNLTQMLLTL------GARKVIVIEKDQQFFPILKDISSQH---   93 (284)
Q Consensus        25 lGQnFL~d~~i~~~iv~~~--~~~~~~~VlEIGpG~G~LT~~Ll~~------~~~~v~aiEiD~~~~~~l~~~~~~~---   93 (284)
                      .|| ++..+.+..++.+.+  .+.+++.|||||+|+|.+|--++..      ...+|++||+|+.+++..++.+...   
T Consensus        57 ~~~-tis~P~~~A~~l~~L~~~l~~g~~VLeIGtGsGY~ta~la~~~~~l~~~~g~V~~iE~~~~l~~~a~~~l~~~~~~  135 (227)
T 2pbf_A           57 HGV-TISAPHMHALSLKRLINVLKPGSRAIDVGSGSGYLTVCMAIKMNVLENKNSYVIGLERVKDLVNFSLENIKRDKPE  135 (227)
T ss_dssp             TTE-EECCHHHHHHHHHHHTTTSCTTCEEEEESCTTSHHHHHHHHHTTTTTCTTCEEEEEESCHHHHHHHHHHHHHHCGG
T ss_pred             CCC-EECHHHHHHHHHHHHHHHCCCCCEEEEECCCCCHHHHHHHHHHHHHCCCCCEEEEEEECHHHHHHHHHHHHHCCHH
T ss_conf             997-8557899999999878647998869983799739999999997652245653899970599999999999851044


Q ss_pred             ---HCCCCCCHHHHCCCCHH
Q ss_conf             ---00122000000014315
Q gi|254780398|r   94 ---PNRLEIIQDDALKVDFE  110 (284)
Q Consensus        94 ---~~~~~ii~~Dal~~d~~  110 (284)
                         -+++++++||+......
T Consensus       136 ~~~~~nv~~~~gd~~~~~~~  155 (227)
T 2pbf_A          136 LLKIDNFKIIHKNIYQVNEE  155 (227)
T ss_dssp             GGSSTTEEEEECCGGGCCHH
T ss_pred             HHCCCCEEEEECCCCCCCCC
T ss_conf             41557589997773201255


No 50 
>3dlc_A Putative S-adenosyl-L-methionine-dependent methyltransferase; NP_988299.1, structural genomics, joint center for structural genomics; HET: MSE SAM; 1.15A {Methanococcus maripaludis}
Probab=98.70  E-value=1.8e-08  Score=71.71  Aligned_cols=90  Identities=22%  Similarity=0.292  Sum_probs=69.1

Q ss_pred             HHHHHHHHHHCCCCCCCEEEEECCCCCHHHHHHHHCCCCEEEEECCCCCCHHHHHHHHHH--HHCCCCCCHHHHCCCCHH
Q ss_conf             899999999719899987999758988234677502352599842554303688787532--200122000000014315
Q gi|254780398|r   33 LNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQ--HPNRLEIIQDDALKVDFE  110 (284)
Q Consensus        33 ~~i~~~iv~~~~~~~~~~VlEIGpG~G~LT~~Ll~~~~~~v~aiEiD~~~~~~l~~~~~~--~~~~~~ii~~Dal~~d~~  110 (284)
                      +.+++++++.+++.++ .|||||||+|..+..|+++...+|+++|+.+.+++.+++....  ..++++++++|+.++.++
T Consensus        30 ~~~~~~i~~~~~~~~~-~VLDiGcG~G~~~~~la~~~~~~v~giD~s~~~l~~a~~~~~~~~~~~~i~~~~~d~~~~~~~  108 (219)
T 3dlc_A           30 PIIAENIINRFGITAG-TCIDIGSGPGALSIALAKQSDFSIRALDFSKHMNEIALKNIADANLNDRIQIVQGDVHNIPIE  108 (219)
T ss_dssp             HHHHHHHHHHHCCCEE-EEEEETCTTSHHHHHHHHHSEEEEEEEESCHHHHHHHHHHHHHTTCTTTEEEEECBTTBCSSC
T ss_pred             HHHHHHHHHHCCCCCC-EEEEECCCCCHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHHCCCCCCEEECCCCCCCCCCC
T ss_conf             9999999997299999-399962758599999995369989999797899999987444216666400013653356754


Q ss_pred             HHCCCCCCEEEEECCCH
Q ss_conf             52133222011202322
Q gi|254780398|r  111 KFFNISSPIRIIANLPY  127 (284)
Q Consensus       111 ~~~~~~~~~~vvgNLPY  127 (284)
                      +-    .--.|+++--+
T Consensus       109 ~~----~fD~V~~~~~l  121 (219)
T 3dlc_A          109 DN----YADLIVSRGSV  121 (219)
T ss_dssp             TT----CEEEEEEESCG
T ss_pred             CC----CCCEEEECCHH
T ss_conf             45----55299984416


No 51 
>2nxc_A L11 mtase, ribosomal protein L11 methyltransferase; transferase S-adenosly-L-methionine dependent methyltransferase posttranslational modification; 1.59A {Thermus thermophilus HB8} SCOP: c.66.1.39 PDB: 1ufk_A 2nxe_A* 2nxj_A 2nxn_A 2zbp_A* 2zbq_A* 2zbr_A* 3cjq_A* 3cjr_A* 3cju_A* 3egv_A* 3cjt_A*
Probab=98.70  E-value=6.1e-08  Score=68.34  Aligned_cols=88  Identities=18%  Similarity=0.244  Sum_probs=64.7

Q ss_pred             CCCCCEEEEECCCCCHHHHHHHHCCCCEEEEECCCCCCHHHHHHHHHHHHCCCCCCHHHHCCCCHHHHCCCCCCEEEEEC
Q ss_conf             89998799975898823467750235259984255430368878753220012200000001431552133222011202
Q gi|254780398|r   45 SLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIAN  124 (284)
Q Consensus        45 ~~~~~~VlEIGpG~G~LT~~Ll~~~~~~v~aiEiD~~~~~~l~~~~~~~~~~~~ii~~Dal~~d~~~~~~~~~~~~vvgN  124 (284)
                      ..+++.||++|||.|.|+..+++.++ +|+++|+|+.+++.++++...+.-+.+++++|....     ...+.--.|++|
T Consensus       118 ~~~g~~VLDvGcGsGiLsi~aak~G~-~V~aiDid~~av~~a~~N~~~N~v~~~~~~~~~~~~-----~~~~~fDlIvaN  191 (254)
T 2nxc_A          118 LRPGDKVLDLGTGSGVLAIAAEKLGG-KALGVDIDPMVLPQAEANAKRNGVRPRFLEGSLEAA-----LPFGPFDLLVAN  191 (254)
T ss_dssp             CCTTCEEEEETCTTSHHHHHHHHTTC-EEEEEESCGGGHHHHHHHHHHTTCCCEEEESCHHHH-----GGGCCEEEEEEE
T ss_pred             CCCCCEEEEECCCCCHHHHHHHHCCC-EEEEEECCHHHHHHHHHHHHHHCCCEEEEECCHHHC-----CCCCCCCEEEEE
T ss_conf             79979899971777888999984599-899998872788999998997099449998743451-----645786689998


Q ss_pred             CCHHHHHHHHHHHH
Q ss_conf             32246788999998
Q gi|254780398|r  125 LPYNIGTRLLFNWI  138 (284)
Q Consensus       125 LPYnIss~Il~~ll  138 (284)
                      +-+++-..++..+.
T Consensus       192 i~~~~l~~l~~~l~  205 (254)
T 2nxc_A          192 LYAELHAALAPRYR  205 (254)
T ss_dssp             CCHHHHHHHHHHHH
T ss_pred             EEHHHHHHHHHHHH
T ss_conf             10065688999999


No 52 
>3f4k_A Putative methyltransferase; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; 2.30A {Bacteroides thetaiotaomicron}
Probab=98.70  E-value=3.4e-08  Score=69.91  Aligned_cols=86  Identities=19%  Similarity=0.267  Sum_probs=68.6

Q ss_pred             CCCCCCCCCCHHHHHHHHHHCC-CCCCCEEEEECCCCCHHHHHHHHCCCCEEEEECCCCCCHHHHHHHHHHH--HCCCCC
Q ss_conf             3658411239899999999719-8999879997589882346775023525998425543036887875322--001220
Q gi|254780398|r   23 KYMGQNFLLDLNILKKIAESSG-SLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQH--PNRLEI   99 (284)
Q Consensus        23 k~lGQnFL~d~~i~~~iv~~~~-~~~~~~VlEIGpG~G~LT~~Ll~~~~~~v~aiEiD~~~~~~l~~~~~~~--~~~~~i   99 (284)
                      +++|..   ++...++.++.++ +.++..|||||||+|..|..|+++...+|++||+++.+++.+++.....  .+++++
T Consensus        24 ~r~~pg---~~~~~~~~l~~l~~l~~~~rVLDlGCG~G~~~~~La~~~~~~v~gvD~S~~ml~~a~~~~~~~~~~~~v~~  100 (257)
T 3f4k_A           24 KRQGPG---SPEATRKAVSFINELTDDAKIADIGCGTGGQTLFLADYVKGQITGIDLFPDFIEIFNENAVKANCADRVKG  100 (257)
T ss_dssp             SCSSSC---CHHHHHHHHTTSCCCCTTCEEEEETCTTSHHHHHHHHHCCSEEEEEESCHHHHHHHHHHHHHTTCTTTEEE
T ss_pred             CCCCCC---CHHHHHHHHHHCCCCCCCCEEEEECCCCCHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHHHHHHCCHHH
T ss_conf             356999---99999999983607999797999717797999999986699799996845677888987764321000011


Q ss_pred             CHHHHCCCCHHH
Q ss_conf             000000143155
Q gi|254780398|r  100 IQDDALKVDFEK  111 (284)
Q Consensus       100 i~~Dal~~d~~~  111 (284)
                      +++|+.++.+++
T Consensus       101 ~~~d~~~l~~~~  112 (257)
T 3f4k_A          101 ITGSMDNLPFQN  112 (257)
T ss_dssp             EECCTTSCSSCT
T ss_pred             HHHHHHHHHCCC
T ss_conf             130388762368


No 53 
>3dtn_A Putative methyltransferase MM_2633; structural genomics, unknown function, PSI-2, protein structure initiative; 2.09A {Methanosarcina mazei}
Probab=98.69  E-value=3e-08  Score=70.29  Aligned_cols=75  Identities=19%  Similarity=0.342  Sum_probs=58.8

Q ss_pred             HHHHHHHCC-CCCCCEEEEECCCCCHHHHHHHHCCCC-EEEEECCCCCCHHHHHHHHHHHHCCCCCCHHHHCCCCHHH
Q ss_conf             999999719-899987999758988234677502352-5998425543036887875322001220000000143155
Q gi|254780398|r   36 LKKIAESSG-SLDGITVIEIGAGPGNLTQMLLTLGAR-KVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEK  111 (284)
Q Consensus        36 ~~~iv~~~~-~~~~~~VlEIGpG~G~LT~~Ll~~~~~-~v~aiEiD~~~~~~l~~~~~~~~~~~~ii~~Dal~~d~~~  111 (284)
                      ...+...+. ..++..|||||||+|.+|..|+++.+. +++++|+++.+++.+++.+.... +++++++|+.++++++
T Consensus        32 ~~~~~~~~~~~~~~~~VLDiGcG~G~~~~~l~~~~~~~~v~giD~s~~~l~~A~~~~~~~~-~v~~~~~D~~~~~~~~  108 (234)
T 3dtn_A           32 YGVSVSIASVDTENPDILDLGAGTGLLSAFLMEKYPEATFTLVDMSEKMLEIAKNRFRGNL-KVKYIEADYSKYDFEE  108 (234)
T ss_dssp             HHHHHHTCCCSCSSCEEEEETCTTSHHHHHHHHHCTTCEEEEEESCHHHHHHHHHHTCSCT-TEEEEESCTTTCCCCS
T ss_pred             HHHHHHHHHCCCCCCEEEEECCCCCHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHCCC-CEEEEEEECCCCCCCC
T ss_conf             9999998435699995999817685999999998899689999585045789998630277-6247742001345445


No 54 
>2yqz_A Hypothetical protein TTHA0223; RNA methyltransferase, SAM, structural genomics, NPPSFA; HET: SAM; 1.80A {Thermus thermophilus HB8} PDB: 2yr0_A
Probab=98.68  E-value=3.8e-08  Score=69.62  Aligned_cols=89  Identities=17%  Similarity=0.315  Sum_probs=65.6

Q ss_pred             HHHHHHHHCC-CCCCCEEEEECCCCCHHHHHHHHCCCCEEEEECCCCCCHHHHHHHHHHHHCCCCCCHHHHCCCCHHHHC
Q ss_conf             9999999719-899987999758988234677502352599842554303688787532200122000000014315521
Q gi|254780398|r   35 ILKKIAESSG-SLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFF  113 (284)
Q Consensus        35 i~~~iv~~~~-~~~~~~VlEIGpG~G~LT~~Ll~~~~~~v~aiEiD~~~~~~l~~~~~~~~~~~~ii~~Dal~~d~~~~~  113 (284)
                      +...+...+. ..++..|||||||+|.+|..++++++ +|+++|+.+.+++.+++.......+++++++|+.++++++- 
T Consensus        26 ~~~~l~~~~~~~~~~~~vLDiGcG~G~~t~~la~~~~-~V~gvD~S~~~l~~a~~r~~~~~~~v~~~~~da~~l~~~~~-  103 (263)
T 2yqz_A           26 IATAMASAVHPKGEEPVFLELGVGTGRIALPLIARGY-RYIALDADAAMLEVFRQKIAGVDRKVQVVQADARAIPLPDE-  103 (263)
T ss_dssp             HHHHHHHHCCCSSSCCEEEEETCTTSTTHHHHHTTTC-EEEEEESCHHHHHHHHHHTTTSCTTEEEEESCTTSCCSCTT-
T ss_pred             HHHHHHHHHCCCCCCCEEEEECCCCCHHHHHHHHCCC-EEEEEECCHHHHHHHHHHCCCCCCCCHHHHHCCCCCCCCCC-
T ss_conf             9999998612358999899951788699999996699-89999898999999874021011441022201222346676-


Q ss_pred             CCCCCEEEEECCCHH
Q ss_conf             332220112023224
Q gi|254780398|r  114 NISSPIRIIANLPYN  128 (284)
Q Consensus       114 ~~~~~~~vvgNLPYn  128 (284)
                         .--.|+++.-.+
T Consensus       104 ---sfD~V~~~~~l~  115 (263)
T 2yqz_A          104 ---SVHGVIVVHLWH  115 (263)
T ss_dssp             ---CEEEEEEESCGG
T ss_pred             ---CCCEEEECCHHH
T ss_conf             ---104787512277


No 55 
>1nw3_A Histone methyltransferase DOT1L; HDOT1, histone lysine methyltransferase,; HET: SAM; 2.50A {Homo sapiens} SCOP: c.66.1.31
Probab=98.68  E-value=5.5e-08  Score=68.64  Aligned_cols=94  Identities=10%  Similarity=0.225  Sum_probs=72.7

Q ss_pred             CCHHHHHHHHHHCCCCCCCEEEEECCCCCHHHHHHHHC-CCCEEEEECCCCCCHHHHHHHHHHH----------HCCCCC
Q ss_conf             39899999999719899987999758988234677502-3525998425543036887875322----------001220
Q gi|254780398|r   31 LDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTL-GARKVIVIEKDQQFFPILKDISSQH----------PNRLEI   99 (284)
Q Consensus        31 ~d~~i~~~iv~~~~~~~~~~VlEIGpG~G~LT~~Ll~~-~~~~v~aiEiD~~~~~~l~~~~~~~----------~~~~~i   99 (284)
                      .....+..|++.+++.+++.|++||||.|.++..++.. +++++++||+.+..++.+++.....          ..++++
T Consensus       139 ~~~~~~~~i~~~~~l~~~~~~~DiG~G~G~~~~~~a~~~~~~~~~Giei~~~~~~~A~~~~~~~~~~~~~~g~~~~~v~~  218 (416)
T 1nw3_A          139 TSFDLVAQMIDEIKMTDDDLFVDLGSGVGQVVLQVAAATNCKHHYGVEKADIPAKYAETMDREFRKWMKWYGKKHAEYTL  218 (416)
T ss_dssp             CCHHHHHHHHHHSCCCTTCEEEEETCTTSHHHHHHHHHCCCSEEEEEECSHHHHHHHHHHHHHHHHHHHHHTCCCCCEEE
T ss_pred             HHHHHHHHHHHHHCCCCCCEEEECCCCCCHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHHHHHHHHHCCCCCCEEE
T ss_conf             40999999999708999988996688888899999997699889999799999999999999998877762677774599


Q ss_pred             CHHHHCCCCHHHHCCCCCCEEEEECC
Q ss_conf             00000014315521332220112023
Q gi|254780398|r  100 IQDDALKVDFEKFFNISSPIRIIANL  125 (284)
Q Consensus       100 i~~Dal~~d~~~~~~~~~~~~vvgNL  125 (284)
                      ++||+++.++.+... .....++.|+
T Consensus       219 ~~gD~~~~~~~~~~~-~adVv~~n~~  243 (416)
T 1nw3_A          219 ERGDFLSEEWRERIA-NTSVIFVNNF  243 (416)
T ss_dssp             EECCTTSHHHHHHHH-HCSEEEECCT
T ss_pred             EECCCCCCCCCCCCC-CCEEEEECCC
T ss_conf             976656774100267-9859999871


No 56 
>2okc_A Type I restriction enzyme stysji M protein; NP_813429.1, N-6 DNA methylase, structural genomics; HET: SAM; 2.20A {Bacteroides thetaiotaomicron vpi-5482} SCOP: c.66.1.45
Probab=98.68  E-value=2.6e-07  Score=64.42  Aligned_cols=183  Identities=14%  Similarity=0.145  Sum_probs=113.0

Q ss_pred             HHHHCCCCCCCCCCCCCCCCHHHHHHHHHHCCCCCCCEEEEECCCCCHHHHHHHHCC--------------CCEEEEECC
Q ss_conf             999818984336584112398999999997198999879997589882346775023--------------525998425
Q gi|254780398|r   13 ILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLG--------------ARKVIVIEK   78 (284)
Q Consensus        13 ll~~~~~~p~k~lGQnFL~d~~i~~~iv~~~~~~~~~~VlEIGpG~G~LT~~Ll~~~--------------~~~v~aiEi   78 (284)
                      ++.++.-.-+|..||. .+-+.+++-||+.+++..++.|++-.||.|.+..+..+.-              ...+.++|+
T Consensus       138 ll~~~a~~~~k~~Gqf-fTP~~Iv~~mv~ll~~~~~~~IlDPacGsG~fL~~~~~~~~~~~~~~~~~~~~~~~~i~G~e~  216 (445)
T 2okc_A          138 ILEKNGQDKKSGAGQY-FTPRPLIQAMVDCINPQMGETVCDPACGTGGFLLTAYDYMKGQSASKEKRDFLRDKALHGVDN  216 (445)
T ss_dssp             HHHHHHTCTTTCCGGG-CCCHHHHHHHHHHHCCCTTCCEEETTCTTCHHHHHHHHHHHTCC-CCHHHHHHHHTTEEEEES
T ss_pred             HHHHHHHHCCCCCCEE-CCCHHHHHHHHHHCCCCCCCEEECCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHCEECEEC
T ss_conf             9999987525438046-598999999997607999997812788976659999999987312277775530101423412


Q ss_pred             CCCCHHHHHHHHHHH---HCCCCCCHHHHCCCCHHHHCCCCCCEEEEECCCHHHH--------------------HHHHH
Q ss_conf             543036887875322---0012200000001431552133222011202322467--------------------88999
Q gi|254780398|r   79 DQQFFPILKDISSQH---PNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIG--------------------TRLLF  135 (284)
Q Consensus        79 D~~~~~~l~~~~~~~---~~~~~ii~~Dal~~d~~~~~~~~~~~~vvgNLPYnIs--------------------s~Il~  135 (284)
                      |+..+...+-.+.-+   .....+.++|.+..+...     .--.||||.||+..                    ..++.
T Consensus       217 ~~~~~~la~~nl~l~~~~~~~~~i~~~d~~~~~~~~-----~fD~Ii~NPPf~~~~~~~~~~~~~~~~~~~~~~~~~Fi~  291 (445)
T 2okc_A          217 TPLVVTLASMNLYLHGIGTDRSPIVCEDSLEKEPST-----LVDVILANPPFGTRPAGSVDINRPDFYVETKNNQLNFLQ  291 (445)
T ss_dssp             CHHHHHHHHHHHHHTTCCSSCCSEEECCTTTSCCSS-----CEEEEEECCCSSCCCTTCCCCCCTTSSSCCSCHHHHHHH
T ss_pred             CHHHHHHHHHHCCCCCCCCCCCEEECCCHHHHCCCC-----CCCEEECCCCCCCCCCCCCCCCHHHHCCCCCCHHHHHHH
T ss_conf             099999999623102776432012215303202434-----687224589978886553310224430123307799999


Q ss_pred             HHHHHHCCCCCCCHHHHEEEHHHHHHHHHCCCHHHHHHH-HHHHCCCCCEEEECCCCCCEECCCCCCCEEEEEECCCC
Q ss_conf             998520100000011020334478875301231233234-54320133201200011000010578757887301258
Q gi|254780398|r  136 NWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRL-SVLTGWRTKATMMFDISPHVFFPSPKVTSTVIHFIPHL  212 (284)
Q Consensus       136 ~ll~~~~~~~~~~~~vlmvQkEvA~Rl~a~pg~k~Yg~L-Sv~~q~~~~v~~~~~V~~~~F~P~PkVdS~vi~l~pk~  212 (284)
                      +.+... . ++.+.+++ +-.-+    ....+.  +..+ .-++ -.+.+..+...|++.|.+ -.|.++++-+...+
T Consensus       292 ~~l~~L-k-~~G~~aiI-vP~~~----L~~~~~--~~~iR~~Ll-~~~~i~~Ii~lp~~~F~~-t~v~t~Ilvl~K~k  358 (445)
T 2okc_A          292 HMMLML-K-TGGRAAVV-LPDNV----LFEAGA--GETIRKRLL-QDFNLHTILRLPTGIFYA-QGVKANVLFFSKGQ  358 (445)
T ss_dssp             HHHHHE-E-EEEEEEEE-EEHHH----HHCSTH--HHHHHHHHH-HHEEEEEEEECCSSSSSS-TTCCEEEEEEEESS
T ss_pred             HHHHHH-C-CCCEEEEE-ECCHH----HHCCCH--HHHHHHHHH-HCCCCEEEEECCCCCCCC-CCCCEEEEEEECCC
T ss_conf             999982-1-79859999-34288----647630--589999999-819852899997255468-99965999998999


No 57 
>3lec_A NADB-rossmann superfamily protein; PSI, MCSG, structural genomics, midwest center for structural genomics, protein structure initiative; 1.80A {Streptococcus agalactiae}
Probab=98.67  E-value=1.1e-07  Score=66.87  Aligned_cols=98  Identities=19%  Similarity=0.204  Sum_probs=74.9

Q ss_pred             HHHHHHHCCCCCCCEEEEECCCCCHHHHHHHHCC-CCEEEEECCCCCCHHHHHHHHHHH--HCCCCCCHHHHCCCCHHHH
Q ss_conf             9999997198999879997589882346775023-525998425543036887875322--0012200000001431552
Q gi|254780398|r   36 LKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLG-ARKVIVIEKDQQFFPILKDISSQH--PNRLEIIQDDALKVDFEKF  112 (284)
Q Consensus        36 ~~~iv~~~~~~~~~~VlEIGpG~G~LT~~Ll~~~-~~~v~aiEiD~~~~~~l~~~~~~~--~~~~~ii~~Dal~~d~~~~  112 (284)
                      +..|++.+  .+++.|++||+|.|.|+..|++.+ +.+|+|+|+++..++.+++....+  .++++++.+|.+....+. 
T Consensus        12 L~~ia~~v--~~g~~vlDIG~g~G~l~i~l~~~~~~~~viavDi~~~~l~~A~~n~~~~gl~~~I~~~~~Dgl~~~~~~-   88 (230)
T 3lec_A           12 LQKVANYV--PKGARLLDVGSDHAYLPIFLLQMGYCDFAIAGEVVNGPYQSALKNVSEHGLTSKIDVRLANGLSAFEEA-   88 (230)
T ss_dssp             HHHHHTTS--CTTEEEEEETCSTTHHHHHHHHTTCEEEEEEEESSHHHHHHHHHHHHHTTCTTTEEEEECSGGGGCCGG-
T ss_pred             HHHHHHHC--CCCCEEEEECCCHHHHHHHHHHCCCCCEEEEEECCHHHHHHHHHHHHHCCCCCCEEEEECCCCCCCCCC-
T ss_conf             99999658--998999995286499999999839998799930999999999999998399875799988754100455-


Q ss_pred             CCCCCCEEEEECCCHHHHHHHHHHHH
Q ss_conf             13322201120232246788999998
Q gi|254780398|r  113 FNISSPIRIIANLPYNIGTRLLFNWI  138 (284)
Q Consensus       113 ~~~~~~~~vvgNLPYnIss~Il~~ll  138 (284)
                        ......++++.++..-..|+....
T Consensus        89 --e~~d~iiiag~g~~~i~~Il~~~~  112 (230)
T 3lec_A           89 --DNIDTITICGMGGRLIADILNNDI  112 (230)
T ss_dssp             --GCCCEEEEEEECHHHHHHHHHHTG
T ss_pred             --CCCEEEEECCCCHHHHHHHHHHHH
T ss_conf             --541278642875889999999999


No 58 
>1r18_A Protein-L-isoaspartate(D-aspartate)-O- methyltransferase; isomerization, protein repair, S- adenosyl homocysteine; HET: SAH; 2.20A {Drosophila melanogaster} SCOP: c.66.1.7
Probab=98.66  E-value=8.3e-08  Score=67.51  Aligned_cols=83  Identities=18%  Similarity=0.207  Sum_probs=65.9

Q ss_pred             CCCCCCCCHHHHHHHHHHC--CCCCCCEEEEECCCCCHHHHHHHHCC-------CCEEEEECCCCCCHHHHHHHHHHH--
Q ss_conf             5841123989999999971--98999879997589882346775023-------525998425543036887875322--
Q gi|254780398|r   25 MGQNFLLDLNILKKIAESS--GSLDGITVIEIGAGPGNLTQMLLTLG-------ARKVIVIEKDQQFFPILKDISSQH--   93 (284)
Q Consensus        25 lGQnFL~d~~i~~~iv~~~--~~~~~~~VlEIGpG~G~LT~~Ll~~~-------~~~v~aiEiD~~~~~~l~~~~~~~--   93 (284)
                      .|| ++..+.+..++.+.+  ++.+++.|||||+|+|.+|..+++..       ..+|++||+|+.+++.+++.+...  
T Consensus        61 ~~~-~is~P~~~a~~l~~L~~~l~pg~~VLeIG~GtGy~ta~la~l~g~~g~~~~~~V~~iE~~~~l~~~A~~~l~~~~~  139 (227)
T 1r18_A           61 GGV-TISAPHMHAFALEYLRDHLKPGARILDVGSGSGYLTACFYRYIKAKGVDADTRIVGIEHQAELVRRSKANLNTDDR  139 (227)
T ss_dssp             TTE-EECCHHHHHHHHHHTTTTCCTTCEEEEESCTTSHHHHHHHHHHHHSCCCTTCEEEEEESCHHHHHHHHHHHHHHHH
T ss_pred             CCC-EECCHHHHHHHHHHHHHHCCCCCEEEEECCCCCHHHHHHHHHHHHCCCCCCCEEEEEECCHHHHHHHHHHHHHCCC
T ss_conf             998-8633699999999767538999889995799779999999985331577766899994789999999999976051


Q ss_pred             ----HCCCCCCHHHHCCCC
Q ss_conf             ----001220000000143
Q gi|254780398|r   94 ----PNRLEIIQDDALKVD  108 (284)
Q Consensus        94 ----~~~~~ii~~Dal~~d  108 (284)
                          -.+++++++|+..-.
T Consensus       140 ~~l~~~nv~~~~~D~~~g~  158 (227)
T 1r18_A          140 SMLDSGQLLIVEGDGRKGY  158 (227)
T ss_dssp             HHHHHTSEEEEESCGGGCC
T ss_pred             HHCCCCCEEEEECCCCCCC
T ss_conf             0205663699977845577


No 59 
>2o57_A Putative sarcosine dimethylglycine methyltransferase; structural genomics, protein structure initiative, PSI-2; 1.95A {Galdieria sulphuraria} SCOP: c.66.1.18
Probab=98.66  E-value=4.4e-08  Score=69.23  Aligned_cols=79  Identities=11%  Similarity=0.101  Sum_probs=63.4

Q ss_pred             HHHHHHHHHHCCCCCCCEEEEECCCCCHHHHHHHHCCCCEEEEECCCCCCHHHHHHHHHH--HHCCCCCCHHHHCCCCHH
Q ss_conf             899999999719899987999758988234677502352599842554303688787532--200122000000014315
Q gi|254780398|r   33 LNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQ--HPNRLEIIQDDALKVDFE  110 (284)
Q Consensus        33 ~~i~~~iv~~~~~~~~~~VlEIGpG~G~LT~~Ll~~~~~~v~aiEiD~~~~~~l~~~~~~--~~~~~~ii~~Dal~~d~~  110 (284)
                      +.++.++....++.++..|||||||+|.++..|++....+|++|++++.+++.+++....  ..++++++.+|+.+++++
T Consensus        68 ~~~~~~l~~~~~l~~~~~VLDiGCG~G~~~~~la~~~g~~v~gvD~s~~~i~~a~~~~~~~gl~~~v~~~~~d~~~l~~~  147 (297)
T 2o57_A           68 EWLASELAMTGVLQRQAKGLDLGAGYGGAARFLVRKFGVSIDCLNIAPVQNKRNEEYNNQAGLADNITVKYGSFLEIPCE  147 (297)
T ss_dssp             HHHHHHHHHTTCCCTTCEEEEETCTTSHHHHHHHHHHCCEEEEEESCHHHHHHHHHHHHHHTCTTTEEEEECCTTSCSSC
T ss_pred             HHHHHHHHHHCCCCCCCEEEEECCCCCHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHHCCCCCCCEEEECCCCCCCCC
T ss_conf             99999999846989999899988999989999999639859999674277888876443205676622786122256766


Q ss_pred             H
Q ss_conf             5
Q gi|254780398|r  111 K  111 (284)
Q Consensus       111 ~  111 (284)
                      +
T Consensus       148 ~  148 (297)
T 2o57_A          148 D  148 (297)
T ss_dssp             T
T ss_pred             C
T ss_conf             6


No 60 
>3bkx_A SAM-dependent methyltransferase; YP_807781.1, cyclopropane-fatty-acyl-phospholipid synthase- like protein, methyltransferase domain; 1.85A {Lactobacillus casei atcc 334}
Probab=98.66  E-value=9.8e-08  Score=67.07  Aligned_cols=93  Identities=19%  Similarity=0.185  Sum_probs=65.3

Q ss_pred             HHHHHHCCCCCCCEEEEECCCCCHHHHHHHHCC-C-CEEEEECCCCC------CHHHHHHHHHHH--HCCCCCCHHHHCC
Q ss_conf             999997198999879997589882346775023-5-25998425543------036887875322--0012200000001
Q gi|254780398|r   37 KKIAESSGSLDGITVIEIGAGPGNLTQMLLTLG-A-RKVIVIEKDQQ------FFPILKDISSQH--PNRLEIIQDDALK  106 (284)
Q Consensus        37 ~~iv~~~~~~~~~~VlEIGpG~G~LT~~Ll~~~-~-~~v~aiEiD~~------~~~~l~~~~~~~--~~~~~ii~~Dal~  106 (284)
                      .++++.+++.+|+.|||||||+|.+|..|+++. + .+|++|++++.      +++.+++.....  .++++++.+|+..
T Consensus        33 ~~ll~~~~i~pG~rVLDiGCG~G~~t~~la~~~g~~~~V~gvD~s~~~~~~~~~l~~A~~~~~~~~~~~~i~~~~~d~~~  112 (275)
T 3bkx_A           33 LAIAEAWQVKPGEKILEIGCGQGDLSAVLADQVGSSGHVTGIDIASPDYGAPLTLGQAWNHLLAGPLGDRLTVHFNTNLS  112 (275)
T ss_dssp             HHHHHHHTCCTTCEEEEESCTTSHHHHHHHHHHCTTCEEEEECSSCTTCCSSSCHHHHHHHHHTSTTGGGEEEECSCCTT
T ss_pred             HHHHHHCCCCCCCEEEEECCCCCHHHHHHHHHHCCCCCEEEEECCHHHHHHHHHHHHHHHHHHHCCCCCCCCEEHHHHHH
T ss_conf             99998679798698999665388578999998387775234767777766668999999998855777740102001544


Q ss_pred             CCHHHHCCCCCCEEEEECCCHHH
Q ss_conf             43155213322201120232246
Q gi|254780398|r  107 VDFEKFFNISSPIRIIANLPYNI  129 (284)
Q Consensus       107 ~d~~~~~~~~~~~~vvgNLPYnI  129 (284)
                      .+..++.+..-...+.++.=+++
T Consensus       113 ~~~lp~~~~sFD~V~~~~~l~~~  135 (275)
T 3bkx_A          113 DDLGPIADQHFDRVVLAHSLWYF  135 (275)
T ss_dssp             TCCGGGTTCCCSEEEEESCGGGS
T ss_pred             HCCCCCCCCCCCEEEEEEEEECC
T ss_conf             02476445762689780163328


No 61 
>3lbf_A Protein-L-isoaspartate O-methyltransferase; modified rossman-type fold, S-adenosyl-L- methionine; HET: SAH; 1.80A {Escherichia coli}
Probab=98.65  E-value=1e-07  Score=66.89  Aligned_cols=80  Identities=19%  Similarity=0.222  Sum_probs=68.3

Q ss_pred             CCCCCCCCHHHHHHHHHHCCCCCCCEEEEECCCCCHHHHHHHHCCCCEEEEECCCCCCHHHHHHHHHHHH-CCCCCCHHH
Q ss_conf             5841123989999999971989998799975898823467750235259984255430368878753220-012200000
Q gi|254780398|r   25 MGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQHP-NRLEIIQDD  103 (284)
Q Consensus        25 lGQnFL~d~~i~~~iv~~~~~~~~~~VlEIGpG~G~LT~~Ll~~~~~~v~aiEiD~~~~~~l~~~~~~~~-~~~~ii~~D  103 (284)
                      .|| ++..+.+..++.+.+++.+++.|||||+|+|..|--|++. +.++.++|.++.++...++.+.... .++.+++||
T Consensus        56 ~~~-~is~P~~~A~~l~~L~~~~g~~VLeIGsGtGY~tAlla~l-~~~v~~ve~~~~~~~~a~~~~~~~~~~nv~~~~gd  133 (210)
T 3lbf_A           56 QGQ-TISQPYMVARMTELLELTPQSRVLEIGTGSGYQTAILAHL-VQHVCSVERIKGLQWQARRRLKNLDLHNVSTRHGD  133 (210)
T ss_dssp             TSC-EECCHHHHHHHHHHTTCCTTCEEEEECCTTSHHHHHHHHH-SSEEEEEESCHHHHHHHHHHHHHTTCCSEEEEESC
T ss_pred             CCC-EECCCHHHHHHHHHCCCCCCCEEEEECCCHHHHHHHHHHH-HCEECCCCCCHHHHHHHHHHHHHHCCCCCEEEECC
T ss_conf             981-7544367476787565689987999678406999999986-28325454222899999999886266671799857


Q ss_pred             HCC
Q ss_conf             001
Q gi|254780398|r  104 ALK  106 (284)
Q Consensus       104 al~  106 (284)
                      ...
T Consensus       134 g~~  136 (210)
T 3lbf_A          134 GWQ  136 (210)
T ss_dssp             GGG
T ss_pred             CCC
T ss_conf             776


No 62 
>3d2l_A SAM-dependent methyltransferase; ZP_00538691.1, structural genomics, joint center for structural genomics, JCSG; HET: MSE; 1.90A {Exiguobacterium sibiricum 255-15}
Probab=98.65  E-value=5.7e-08  Score=68.54  Aligned_cols=74  Identities=15%  Similarity=0.303  Sum_probs=60.9

Q ss_pred             HHHHHHHHHCCCCCCCEEEEECCCCCHHHHHHHHCCCCEEEEECCCCCCHHHHHHHHHHHHCCCCCCHHHHCCCCHHH
Q ss_conf             999999997198999879997589882346775023525998425543036887875322001220000000143155
Q gi|254780398|r   34 NILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEK  111 (284)
Q Consensus        34 ~i~~~iv~~~~~~~~~~VlEIGpG~G~LT~~Ll~~~~~~v~aiEiD~~~~~~l~~~~~~~~~~~~ii~~Dal~~d~~~  111 (284)
                      ..++.+.+.+.  +++.|||+|||+|.+|..+++ ++ +|+++|+++.+++.+++.......+++++++|+.++++++
T Consensus        22 ~~~~~i~~~~~--~~~~VLD~GCG~G~~~~~la~-~~-~v~giD~s~~~l~~a~~~~~~~~~~i~~~~~d~~~~~~~~   95 (243)
T 3d2l_A           22 EWVAWVLEQVE--PGKRIADIGCGTGTATLLLAD-HY-EVTGVDLSEEMLEIAQEKAMETNRHVDFWVQDMRELELPE   95 (243)
T ss_dssp             HHHHHHHHHSC--TTCEEEEESCTTCHHHHHHTT-TS-EEEEEESCHHHHHHHHHHHHHTTCCCEEEECCGGGCCCSS
T ss_pred             HHHHHHHHHCC--CCCEEEEECCCCCHHHHHHHH-CC-EEEEEECCHHHHHHHHHHHHHCCCEEEECCCCHHCCCCCC
T ss_conf             99999998689--999999968878799999861-85-7999988518899988765301202331012000011243


No 63 
>3b3j_A Histone-arginine methyltransferase CARM1; protein arginine methyltransferase 4, APO catalytic domain, alternative splicing; 2.55A {Rattus norvegicus}
Probab=98.65  E-value=4.9e-08  Score=68.92  Aligned_cols=83  Identities=18%  Similarity=0.300  Sum_probs=62.5

Q ss_pred             CCCCHHHHHH----HHHHCCCCCCCEEEEECCCCCHHHHHHHHCCCCEEEEECCCCCCHHHHHHHHHH--HHCCCCCCHH
Q ss_conf             1239899999----999719899987999758988234677502352599842554303688787532--2001220000
Q gi|254780398|r   29 FLLDLNILKK----IAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQ--HPNRLEIIQD  102 (284)
Q Consensus        29 FL~d~~i~~~----iv~~~~~~~~~~VlEIGpG~G~LT~~Ll~~~~~~v~aiEiD~~~~~~l~~~~~~--~~~~~~ii~~  102 (284)
                      .|.|..=.+.    |.+.....+++.||+||+|+|.|+...++.||++|+|||..+ ++..+++....  ..+++++++|
T Consensus       136 ML~D~vRt~aY~~AI~~n~~~~~~kvVLDvGcGtGiLs~~AA~aGA~kV~avE~S~-~a~~A~~~v~~Ngl~d~I~vi~g  214 (480)
T 3b3j_A          136 MMQDYVRTGTYQRAILQNHTDFKDKIVLDVGCGSGILSFFAAQAGARKIYAVEAST-MAQHAEVLVKSNNLTDRIVVIPG  214 (480)
T ss_dssp             HHHHHHHHHHHHHHHHHTGGGTTTCEEEEESCSTTHHHHHHHHTTCSEEEEEECHH-HHHHHHHHHHHTTCTTTEEEEES
T ss_pred             HCCCHHHHHHHHHHHHHCHHHCCCCEEEEECCCCCHHHHHHHHCCCCEEEEECCHH-HHHHHHHHHHHCCCCCCEEEEEC
T ss_conf             80988789999999985755359898999688836999999985998899990959-99999999997499861689975


Q ss_pred             HHCCCCHHHH
Q ss_conf             0001431552
Q gi|254780398|r  103 DALKVDFEKF  112 (284)
Q Consensus       103 Dal~~d~~~~  112 (284)
                      |+.++++++-
T Consensus       215 ~~e~l~lpe~  224 (480)
T 3b3j_A          215 KVEEVSLPEQ  224 (480)
T ss_dssp             CTTTCCCSSC
T ss_pred             CHHHCCCCCC
T ss_conf             2765676766


No 64 
>1xtp_A LMAJ004091AAA; SGPP, structural genomics, PSI, protein structure initiative, SAM-dependent methyltransferase; HET: SAI; 1.94A {Leishmania major strain friedlin} SCOP: c.66.1.42
Probab=98.64  E-value=9.7e-08  Score=67.10  Aligned_cols=104  Identities=14%  Similarity=0.112  Sum_probs=74.4

Q ss_pred             CHHHHHHHHHHCCCCCCCEEEEECCCCCHHHHHHHHCCCCEEEEECCCCCCHHHHHHHHHHHHCCCCCCHHHHCCCCHHH
Q ss_conf             98999999997198999879997589882346775023525998425543036887875322001220000000143155
Q gi|254780398|r   32 DLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEK  111 (284)
Q Consensus        32 d~~i~~~iv~~~~~~~~~~VlEIGpG~G~LT~~Ll~~~~~~v~aiEiD~~~~~~l~~~~~~~~~~~~ii~~Dal~~d~~~  111 (284)
                      |....+.+.+.+.......|||||||+|.+|..|+...+.+|++||+.+.+++.+++.....+ +++++++|+..+++++
T Consensus        78 d~~~s~~fl~~~~~~~~~~vLDiGcG~G~~t~~ll~~~~~~V~~vD~s~~~l~~a~~~~~~~~-~~~~~~~d~~~~~~~~  156 (254)
T 1xtp_A           78 DIEGSRNFIASLPGHGTSRALDCGAGIGRITKNLLTKLYATTDLLEPVKHMLEEAKRELAGMP-VGKFILASMETATLPP  156 (254)
T ss_dssp             HHHHHHHHHHTSTTCCCSEEEEETCTTTHHHHHTHHHHCSEEEEEESCHHHHHHHHHHTTTSS-EEEEEESCGGGCCCCS
T ss_pred             HHHHHHHHHHHCCCCCCCEEEEECCCCCHHHHHHHHHCCCEEEEEECCHHHHHHHHHCCCCCC-EEEEEECCHHHCCCCC
T ss_conf             899899999857335897389966788599999998639858999198899999864015774-2799977875688877


Q ss_pred             HCCCCCCEEEEECCCHHHHHHHHHHHHH
Q ss_conf             2133222011202322467889999985
Q gi|254780398|r  112 FFNISSPIRIIANLPYNIGTRLLFNWIS  139 (284)
Q Consensus       112 ~~~~~~~~~vvgNLPYnIss~Il~~ll~  139 (284)
                      -   .-...+....-++++.+-+.+++.
T Consensus       157 ~---~fD~I~~~~~l~hl~d~~~~~~l~  181 (254)
T 1xtp_A          157 N---TYDLIVIQWTAIYLTDADFVKFFK  181 (254)
T ss_dssp             S---CEEEEEEESCGGGSCHHHHHHHHH
T ss_pred             C---CCCEEEEEEEHHCCCHHHHHHHHH
T ss_conf             7---634676421100476145789999


No 65 
>3kr9_A SAM-dependent methyltransferase; class I rossmann-like methyltransferase fold; 2.00A {Streptococcus pneumoniae} PDB: 3ku1_A*
Probab=98.64  E-value=1.1e-07  Score=66.69  Aligned_cols=97  Identities=16%  Similarity=0.168  Sum_probs=71.3

Q ss_pred             HHHHHHHCCCCCCCEEEEECCCCCHHHHHHHHCCC-CEEEEECCCCCCHHHHHHHHHHH--HCCCCCCHHHHCCCCHHHH
Q ss_conf             99999971989998799975898823467750235-25998425543036887875322--0012200000001431552
Q gi|254780398|r   36 LKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGA-RKVIVIEKDQQFFPILKDISSQH--PNRLEIIQDDALKVDFEKF  112 (284)
Q Consensus        36 ~~~iv~~~~~~~~~~VlEIGpG~G~LT~~Ll~~~~-~~v~aiEiD~~~~~~l~~~~~~~--~~~~~ii~~Dal~~d~~~~  112 (284)
                      +..+++.+  .+++.|+|||||+|.++..|+++++ .+|+|+|+++..++.+++....+  .++++++.+|+++.-... 
T Consensus         6 L~~i~~~v--~~g~~ilDiG~g~G~~~~~l~~~~~~~~v~avDi~~~~l~~a~~n~~~~~l~~~i~~~~~D~~~~~~~~-   82 (225)
T 3kr9_A            6 LELVASFV--SQGAILLDVGSDHAYLPIELVERGQIKSAIAGEVVEGPYQSAVKNVEAHGLKEKIQVRLANGLAAFEET-   82 (225)
T ss_dssp             HHHHHTTS--CTTEEEEEETCSTTHHHHHHHHTTSEEEEEEEESSHHHHHHHHHHHHHTTCTTTEEEEECSGGGGCCGG-
T ss_pred             HHHHHHHC--CCCCEEEEECCCHHHHHHHHHHCCCCCEEEEEECCHHHHHHHHHHHHHCCCCCCEEEEECCCCHHHHCC-
T ss_conf             99999558--998989996185699999999809998899710999999999999998299987799988741322034-


Q ss_pred             CCCCCCEEEEECCCHHHHHHHHHHH
Q ss_conf             1332220112023224678899999
Q gi|254780398|r  113 FNISSPIRIIANLPYNIGTRLLFNW  137 (284)
Q Consensus       113 ~~~~~~~~vvgNLPYnIss~Il~~l  137 (284)
                        ......+++...+....+|+...
T Consensus        83 --~~~d~iviag~g~~~i~~il~~~  105 (225)
T 3kr9_A           83 --DQVSVITIAGMGGRLIARILEEG  105 (225)
T ss_dssp             --GCCCEEEEEEECHHHHHHHHHHT
T ss_pred             --CCCCHHHCCCCCHHHHHHHHHHH
T ss_conf             --66772105387789999999988


No 66 
>3hm2_A Precorrin-6Y C5,15-methyltransferase; alpha-beta-sandwich, structural genomics, PSI-2, protein structure initiative; 2.21A {Corynebacterium diphtheriae}
Probab=98.63  E-value=6.6e-08  Score=68.11  Aligned_cols=78  Identities=12%  Similarity=0.072  Sum_probs=62.8

Q ss_pred             CCHHHHHHHHHHCCCCCCCEEEEECCCCCHHHHHHHHCCCC-EEEEECCCCCCHHHHHHHHHHHH-CCCCCCHHHHCCCC
Q ss_conf             39899999999719899987999758988234677502352-59984255430368878753220-01220000000143
Q gi|254780398|r   31 LDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGAR-KVIVIEKDQQFFPILKDISSQHP-NRLEIIQDDALKVD  108 (284)
Q Consensus        31 ~d~~i~~~iv~~~~~~~~~~VlEIGpG~G~LT~~Ll~~~~~-~v~aiEiD~~~~~~l~~~~~~~~-~~~~ii~~Dal~~d  108 (284)
                      .-+.+-..++..+++.+++.|||||+|+|.+|..++...+. +|+++|+|+.+++.+++...... .+++++++|+.+..
T Consensus         9 tk~e~ra~~l~~L~~~pg~~vLDiGcG~G~~a~~~a~~~~~~~V~avD~~~~~~~~a~~~~~~~~~~~~~~~~~d~~~~~   88 (178)
T 3hm2_A            9 TKQHVRALAISALAPKPHETLWDIGGGSGSIAIEWLRSTPQTTAVCFEISEERRERILSNAINLGVSDRIAVQQGAPRAF   88 (178)
T ss_dssp             HHHHHHHHHHHHHCCCTTEEEEEESTTTTHHHHHHHTTSSSEEEEEECSCHHHHHHHHHHHHTTTCTTSEEEECCTTGGG
T ss_pred             CHHHHHHHHHHHCCCCCCCEEEEECCCCCHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHHCCCCEEEEEECCCHHC
T ss_conf             58999999998559999799999766888899999996897769885089999999999999819997899994362002


No 67 
>2b25_A Hypothetical protein; structural genomics, methyl transferase, SAM, structural genomics consortium, SGC; HET: SAM; 2.50A {Homo sapiens} SCOP: c.66.1.13
Probab=98.63  E-value=7.7e-08  Score=67.71  Aligned_cols=77  Identities=22%  Similarity=0.316  Sum_probs=62.2

Q ss_pred             CCHHHHHHHHHHCCCCCCCEEEEECCCCCHHHHHHHHC-CCC-EEEEECCCCCCHHHHHHHHHHH------------HCC
Q ss_conf             39899999999719899987999758988234677502-352-5998425543036887875322------------001
Q gi|254780398|r   31 LDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTL-GAR-KVIVIEKDQQFFPILKDISSQH------------PNR   96 (284)
Q Consensus        31 ~d~~i~~~iv~~~~~~~~~~VlEIGpG~G~LT~~Ll~~-~~~-~v~aiEiD~~~~~~l~~~~~~~------------~~~   96 (284)
                      +=+.=+..|+..+++.+++.|||+|+|.|++|..|++. ++. +|+++|+++.+++.+++++..+            ..+
T Consensus        89 iypkD~a~Il~~l~I~PG~rVLE~GtGsG~lt~~LAr~vgp~G~V~~~D~~~~~~~~Ar~n~~~~~~~~~~~~~~~~~~~  168 (336)
T 2b25_A           89 TFPKDINMILSMMDINPGDTVLEAGSGSGGMSLFLSKAVGSQGRVISFEVRKDHHDLAKKNYKHWRDSWKLSHVEEWPDN  168 (336)
T ss_dssp             CCHHHHHHHHHHHTCCTTCEEEEECCTTSHHHHHHHHHHCTTCEEEEEESSHHHHHHHHHHHHHHHHHHTTTCSSCCCCC
T ss_pred             CCHHHHHHHHHHHCCCCCCEEEECCCCCCHHHHHHHHHHCCCCEEEEECCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCE
T ss_conf             57168999999858999988998353777999999996289848998439999999999999974320001221136770


Q ss_pred             CCCCHHHHCCC
Q ss_conf             22000000014
Q gi|254780398|r   97 LEIIQDDALKV  107 (284)
Q Consensus        97 ~~ii~~Dal~~  107 (284)
                      ++++++|+...
T Consensus       169 v~~~~~di~~~  179 (336)
T 2b25_A          169 VDFIHKDISGA  179 (336)
T ss_dssp             EEEEESCTTCC
T ss_pred             EEEEECCHHHC
T ss_conf             79997766652


No 68 
>3eey_A Putative rRNA methylase; rRNA methylation, S-adenosyl-methionine, structural genomics, protein structure initiative, PSI; HET: SAM; 2.20A {Clostridium thermocellum atcc 27405}
Probab=98.63  E-value=6e-08  Score=68.37  Aligned_cols=81  Identities=23%  Similarity=0.365  Sum_probs=61.4

Q ss_pred             CCCCCEEEEECCCCCHHHHHHHHC-C-CCEEEEECCCCCCHHHHHHHHHHH--HCCCCCCHHHHCCCCHHHHCCCCCCEE
Q ss_conf             899987999758988234677502-3-525998425543036887875322--001220000000143155213322201
Q gi|254780398|r   45 SLDGITVIEIGAGPGNLTQMLLTL-G-ARKVIVIEKDQQFFPILKDISSQH--PNRLEIIQDDALKVDFEKFFNISSPIR  120 (284)
Q Consensus        45 ~~~~~~VlEIGpG~G~LT~~Ll~~-~-~~~v~aiEiD~~~~~~l~~~~~~~--~~~~~ii~~Dal~~d~~~~~~~~~~~~  120 (284)
                      +.+|+.|||+|||+|.+|..|+++ + ..+|+++|+++.+++.+++.....  .++++++++|+.+++  .+.+ .....
T Consensus        20 ik~G~~VLDlGcG~G~~t~~la~~~~~~~~V~giDis~~~l~~ar~~~~~~g~~~~v~~~~~d~~~~~--~~~~-~~~~~   96 (197)
T 3eey_A           20 VKEGDTVVDATCGNGNDTAFLASLVGENGRVFGFDIQDKAIANTTKKLTDLNLIDRVTLIKDGHQNMD--KYID-CPVKA   96 (197)
T ss_dssp             CCTTCEEEESCCTTSHHHHHHHHHHCTTCEEEEECSCHHHHHHHHHHHHHTTCGGGEEEECSCGGGGG--GTCC-SCEEE
T ss_pred             CCCCCEEEEEEEECCHHHHHHHHHHCCCEEEEEEECCHHHHHHHHHHHHHCCCCCCEEEEECCHHHHH--HCCC-CCCCE
T ss_conf             89999999992048899999999838981999997388998999999998399877899985867601--2157-76430


Q ss_pred             EEECCCHH
Q ss_conf             12023224
Q gi|254780398|r  121 IIANLPYN  128 (284)
Q Consensus       121 vvgNLPYn  128 (284)
                      ++.+++|.
T Consensus        97 ~~~~~~~~  104 (197)
T 3eey_A           97 VMFNLGYL  104 (197)
T ss_dssp             EEEEESBC
T ss_pred             EEEEEEEC
T ss_conf             46525532


No 69 
>3g5l_A Putative S-adenosylmethionine dependent methyltransferase; structural genomics, PSI-2, protein structure initiative; 2.35A {Listeria monocytogenes str}
Probab=98.63  E-value=2.6e-08  Score=70.63  Aligned_cols=104  Identities=19%  Similarity=0.277  Sum_probs=70.9

Q ss_pred             CCCC-CCCHHHHHHHHHCCCCCCCCCCCCCCCCHHHHHHHHHHCCCCCCCEEEEECCCCCHHHHHHHHCCCCEEEEECCC
Q ss_conf             9778-884479999998189843365841123989999999971989998799975898823467750235259984255
Q gi|254780398|r    1 MTMN-NKSHSLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKD   79 (284)
Q Consensus         1 ~~~~-~~~~~i~~ll~~~~~~p~k~lGQnFL~d~~i~~~iv~~~~~~~~~~VlEIGpG~G~LT~~Ll~~~~~~v~aiEiD   79 (284)
                      |.|. |.|... ..++.|.-..++..|   +.+-.-...|.+.+...++..|||||||+|..|..+++.++.+|++|++.
T Consensus         1 ~~~~~~~y~~~-~f~~~Y~~~~~~~~~---~~~~~~~~~i~~~lp~~~g~~VLDiGcG~G~~~~~l~~~g~~~v~giD~S   76 (253)
T 3g5l_A            1 MSLKENKYDDK-HFFEQYSQMPRSKEG---LKAAGEWHELKKMLPDFNQKTVLDLGCGFGWHCIYAAEHGAKKVLGIDLS   76 (253)
T ss_dssp             -------------------------CH---HHHHHHHHHHHTTCCCCTTCEEEEETCTTCHHHHHHHHTTCSEEEEEESC
T ss_pred             CCCCCCCCCCH-HHHHHHHHHHCCHHH---HHHHHHHHHHHHHCCCCCCCEEEEECCCCCHHHHHHHHCCCCEEEEEECC
T ss_conf             98873346889-999999872304455---76648899999846878969899983778499999996499989999485


Q ss_pred             CCCHHHHHHHHHHHHCCCCCCHHHHCCCCHH
Q ss_conf             4303688787532200122000000014315
Q gi|254780398|r   80 QQFFPILKDISSQHPNRLEIIQDDALKVDFE  110 (284)
Q Consensus        80 ~~~~~~l~~~~~~~~~~~~ii~~Dal~~d~~  110 (284)
                      +.+++.+++....  .+++.+++|+..++++
T Consensus        77 ~~~i~~a~~~~~~--~~~~~~~~d~~~l~~~  105 (253)
T 3g5l_A           77 ERMLTEAKRKTTS--PVVCYEQKAIEDIAIE  105 (253)
T ss_dssp             HHHHHHHHHHCCC--TTEEEEECCGGGCCCC
T ss_pred             CHHHHHHHHHHCC--CCCCCCCCCCCCCCCC
T ss_conf             0656899874034--4432222222456656


No 70 
>1nkv_A Hypothetical protein YJHP; structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 2.90A {Escherichia coli} SCOP: c.66.1.21
Probab=98.63  E-value=7.3e-08  Score=67.85  Aligned_cols=77  Identities=14%  Similarity=0.166  Sum_probs=64.9

Q ss_pred             CHHHHHHHHHHCCCCCCCEEEEECCCCCHHHHHHHHCCCCEEEEECCCCCCHHHHHHHHHH--HHCCCCCCHHHHCCCC
Q ss_conf             9899999999719899987999758988234677502352599842554303688787532--2001220000000143
Q gi|254780398|r   32 DLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQ--HPNRLEIIQDDALKVD  108 (284)
Q Consensus        32 d~~i~~~iv~~~~~~~~~~VlEIGpG~G~LT~~Ll~~~~~~v~aiEiD~~~~~~l~~~~~~--~~~~~~ii~~Dal~~d  108 (284)
                      .+..+..+++.+.+.+++.|||||||.|.++..+++....++++||+++.+++.+++....  ..++++++.+|+....
T Consensus        21 ~~~~~~~l~~~l~l~pg~rVLDiGcG~G~~~~~la~~~~~~v~gvD~s~~~l~~a~~~~~~~gl~~~v~~~~~d~~~~~   99 (256)
T 1nkv_A           21 TEEKYATLGRVLRMKPGTRILDLGSGSGEMLCTWARDHGITGTGIDMSSLFTAQAKRRAEELGVSERVHFIHNDAAGYV   99 (256)
T ss_dssp             CHHHHHHHHHHTCCCTTCEEEEETCTTCHHHHHHHHHTCCEEEEEESCHHHHHHHHHHHHHTTCTTTEEEEESCCTTCC
T ss_pred             CHHHHHHHHHHCCCCCCCEEEEECCCCCHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHHHCCCCCCCCCCCCHHHCC
T ss_conf             8999999999708999999999858888899999986499899998983677899886776065544441136364505


No 71 
>1y8c_A S-adenosylmethionine-dependent methyltransferase; structural genomics, protein structure initiative, PSI, nysgxrc; 2.50A {Clostridium acetobutylicum atcc 824} SCOP: c.66.1.43
Probab=98.62  E-value=9.3e-08  Score=67.22  Aligned_cols=77  Identities=14%  Similarity=0.142  Sum_probs=60.3

Q ss_pred             HHHHHHHHHCC--CCCCCEEEEECCCCCHHHHHHHHCCCCEEEEECCCCCCHHHHHHHHHHHHCCCCCCHHHHCCCCHHH
Q ss_conf             99999999719--8999879997589882346775023525998425543036887875322001220000000143155
Q gi|254780398|r   34 NILKKIAESSG--SLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEK  111 (284)
Q Consensus        34 ~i~~~iv~~~~--~~~~~~VlEIGpG~G~LT~~Ll~~~~~~v~aiEiD~~~~~~l~~~~~~~~~~~~ii~~Dal~~d~~~  111 (284)
                      ..++.+.+.+.  ...+..|||+|||+|.+|..|++.++ +|++||.++.+++.+++.......+++++++|+..+++++
T Consensus        22 ~~~~~~~~~~~~~~~~~~~iLDlGCGtG~~~~~l~~~g~-~v~gvD~S~~ml~~a~~~~~~~~~~~~~~~~d~~~~~~~~  100 (246)
T 1y8c_A           22 KWSDFIIEKCVENNLVFDDYLDLACGTGNLTENLCPKFK-NTWAVDLSQEMLSEAENKFRSQGLKPRLACQDISNLNINR  100 (246)
T ss_dssp             HHHHHHHHHHHTTTCCTTEEEEETCTTSTTHHHHGGGSS-EEEEECSCHHHHHHHHHHHHHTTCCCEEECCCGGGCCCSC
T ss_pred             HHHHHHHHHHHHHCCCCCEEEEEECCCCHHHHHHHHCCC-EEEEEECCHHHHHHHHHHCCCCCCCCCCCCCCHHHHHCCC
T ss_conf             999999999997389989299980746299999997499-5999967499999876311223443222346677751033


No 72 
>1ve3_A Hypothetical protein PH0226; dimer, riken structural genomics/proteomics initiative, RSGI, structural genomics, unknown function, NPPSFA; HET: SAM; 2.10A {Pyrococcus horikoshii} SCOP: c.66.1.43
Probab=98.61  E-value=6.9e-08  Score=68.02  Aligned_cols=65  Identities=20%  Similarity=0.372  Sum_probs=55.6

Q ss_pred             CCCCCEEEEECCCCCHHHHHHHHCCCCEEEEECCCCCCHHHHHHHHHHHHCCCCCCHHHHCCCCHH
Q ss_conf             899987999758988234677502352599842554303688787532200122000000014315
Q gi|254780398|r   45 SLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFE  110 (284)
Q Consensus        45 ~~~~~~VlEIGpG~G~LT~~Ll~~~~~~v~aiEiD~~~~~~l~~~~~~~~~~~~ii~~Dal~~d~~  110 (284)
                      +.++..|||||||+|.+|..+++.++ +|+++++.+.+++.+++.......++..+++|+.+++++
T Consensus        36 ~~~~~rVLDiGCG~G~~~~~la~~~~-~v~g~D~s~~~l~~ak~~~~~~~~~~~~~~~d~~~l~~~  100 (227)
T 1ve3_A           36 MKKRGKVLDLACGVGGFSFLLEDYGF-EVVGVDISEDMIRKAREYAKSRESNVEFIVGDARKLSFE  100 (227)
T ss_dssp             CCSCCEEEEETCTTSHHHHHHHHTTC-EEEEEESCHHHHHHHHHHHHHTTCCCEEEECCTTSCCSC
T ss_pred             CCCCCEEEEECCCCCHHHHHHHHCCC-EEEEEECCCHHHHHHHHHHHHCCCCCCCCCCCCCCCCCC
T ss_conf             79989799986888899999996599-899996750468999998875276533334653348876


No 73 
>1g6q_1 HnRNP arginine N-methyltransferase; SAM-binding domain, beta-barrel, mixed alpha-beta, hexamer, dimer; 2.90A {Saccharomyces cerevisiae} SCOP: c.66.1.6
Probab=98.59  E-value=8.2e-08  Score=67.56  Aligned_cols=94  Identities=17%  Similarity=0.257  Sum_probs=65.4

Q ss_pred             CCCHHHHHH----HHHHCCCCCCCEEEEECCCCCHHHHHHHHCCCCEEEEECCCCCCHHHHHHHHHH--HHCCCCCCHHH
Q ss_conf             239899999----999719899987999758988234677502352599842554303688787532--20012200000
Q gi|254780398|r   30 LLDLNILKK----IAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQ--HPNRLEIIQDD  103 (284)
Q Consensus        30 L~d~~i~~~----iv~~~~~~~~~~VlEIGpG~G~LT~~Ll~~~~~~v~aiEiD~~~~~~l~~~~~~--~~~~~~ii~~D  103 (284)
                      |.|..-.+.    |.+.+...+++.||+||+|+|.|+..+++.++++|+++|.++ ++..+++....  ..++++++++|
T Consensus        17 l~D~~r~~~y~~aI~~~~~~~~~~~VLDiGcGtG~ls~~aa~~Ga~~V~a~d~s~-~~~~a~~~~~~~~~~~~i~~i~~~   95 (328)
T 1g6q_1           17 LQDTVRTLSYRNAIIQNKDLFKDKIVLDVGCGTGILSMFAAKHGAKHVIGVDMSS-IIEMAKELVELNGFSDKITLLRGK   95 (328)
T ss_dssp             HTCHHHHHHHHHHHHHHHHHHTTCEEEEETCTTSHHHHHHHHTCCSEEEEEESST-HHHHHHHHHHHTTCTTTEEEEESC
T ss_pred             HCCHHHHHHHHHHHHHCCCCCCCCEEEEECCCCCHHHHHHHHCCCCEEEEEECHH-HHHHHHHHHHHCCCCCEEEEEEEE
T ss_conf             5876779999999985510069799999789977999999971999899995979-999999999873876238999712


Q ss_pred             HCCCCHHHHCCCCCCEEEEECCCHH
Q ss_conf             0014315521332220112023224
Q gi|254780398|r  104 ALKVDFEKFFNISSPIRIIANLPYN  128 (284)
Q Consensus       104 al~~d~~~~~~~~~~~~vvgNLPYn  128 (284)
                      +.++.+..    ...-.|++++..+
T Consensus        96 ~~~~~~~~----~~~D~vvse~~~~  116 (328)
T 1g6q_1           96 LEDVHLPF----PKVDIIISEWMGY  116 (328)
T ss_dssp             TTTSCCSS----SCEEEEEECCCBT
T ss_pred             EECCCCCC----CCCCEEEEEECCE
T ss_conf             10055776----6642999973320


No 74 
>2ar0_A M.ecoki, type I restriction enzyme ecoki M protein; structural genomics, protein structure initiative, nysgxrc; 2.80A {Escherichia coli} SCOP: c.66.1.45
Probab=98.58  E-value=1.2e-06  Score=60.20  Aligned_cols=188  Identities=13%  Similarity=0.078  Sum_probs=109.0

Q ss_pred             HHHHCCCCCCCCCCCCCCCCHHHHHHHHHHCCCCCCCEEEEECCCCCHHHHHHHHC----C---------------CCEE
Q ss_conf             99981898433658411239899999999719899987999758988234677502----3---------------5259
Q gi|254780398|r   13 ILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTL----G---------------ARKV   73 (284)
Q Consensus        13 ll~~~~~~p~k~lGQnFL~d~~i~~~iv~~~~~~~~~~VlEIGpG~G~LT~~Ll~~----~---------------~~~v   73 (284)
                      ++.++.-..+++.||.| +-+.+++-||+.+.+.+++.|++-.||.|.+.....+.    .               ...+
T Consensus       136 ll~~~a~~~~k~~Gqff-TP~~Iv~~mv~ll~p~~~~~I~DPacGsG~fL~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~  214 (541)
T 2ar0_A          136 LLQKNANETKSGAGQYF-TPRPLIKTIIHLLKPQPREVVQDPAAGTAGFLIEADRYVKSQTNDLDDLDGDTQDFQIHRAF  214 (541)
T ss_dssp             --------------CCC-CCHHHHHHHHHHHCCCTTCCEEETTCTTTHHHHHHHHHHHTTTTTTTTSCHHHHHHHHHTSE
T ss_pred             HHHHHHHHHCCCCCEEC-CCHHHHHHHHHHHCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHH
T ss_conf             99999876177587567-98999999998628998873046577856057999999998436621110467888887666


Q ss_pred             EEECCCCCCHHHHHHHHHHHHCCCCCCHHHHCCCCHH---HHCCCCCCEEEEECCCHHHH-----------------HHH
Q ss_conf             9842554303688787532200122000000014315---52133222011202322467-----------------889
Q gi|254780398|r   74 IVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFE---KFFNISSPIRIIANLPYNIG-----------------TRL  133 (284)
Q Consensus        74 ~aiEiD~~~~~~l~~~~~~~~~~~~ii~~Dal~~d~~---~~~~~~~~~~vvgNLPYnIs-----------------s~I  133 (284)
                      ..+|+|+..+..++-.+--+.....+.++|.+.....   +......--.|+||.||+..                 ..+
T Consensus       215 ~G~E~~~~~~~la~~nl~l~g~~~~~~~~~~~~~~~~l~~d~~~~~~fD~Vl~NPPfg~~~~~~~~~~~~~~~~~~~~~F  294 (541)
T 2ar0_A          215 IGLELVPGTRRLALMNCLLHDIEGNLDHGGAIRLGNTLGSDGENLPKAHIVATNPPFGSAAGTNITRTFVHPTSNKQLCF  294 (541)
T ss_dssp             EEEESCHHHHHHHHHHHHTTTCCCBGGGTBSEEESCTTSHHHHTSCCEEEEEECCCCTTCSSCCCCSCCSSCCSCHHHHH
T ss_pred             HHHHCCHHHHHHHHHHHHHCCCCCCCCCCCCHHCCCCHHHCCCCCCCCCEEEECCCCCCCCCCCCCCCCCCCCCCHHHHH
T ss_conf             30206699999998646634563011347502104504330444434666873699766444343000257655277999


Q ss_pred             HHHHHHHHCCCCCCCHHHHEEEHHHHHHHHHCCCHHHHHHHHHHHCCCCCEEEECCCCCCEECCCCCCCEEEEEECCC
Q ss_conf             999985201000000110203344788753012312332345432013320120001100001057875788730125
Q gi|254780398|r  134 LFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFPSPKVTSTVIHFIPH  211 (284)
Q Consensus       134 l~~ll~~~~~~~~~~~~vlmvQkEvA~Rl~a~pg~k~Yg~LSv~~q~~~~v~~~~~V~~~~F~P~PkVdS~vi~l~pk  211 (284)
                      +.+.+... .+. .+.+ +.+-.-+    .-.-+  .+..+--..--.+.++.+...|.+.|++ -.|.++|+-|+++
T Consensus       295 i~~~l~~L-k~~-Gr~a-iIlP~~~----Lf~~~--~~~~iR~~Lle~~~l~aII~LP~~~F~~-t~v~t~Il~l~K~  362 (541)
T 2ar0_A          295 MQHIIETL-HPG-GRAA-VVVPDNV----LFEGG--KGTDIRRDLMDKCHLHTILRLPTGIFYA-QGVKTNVLFFTKG  362 (541)
T ss_dssp             HHHHHHHE-EEE-EEEE-EEEEHHH----HHCCT--HHHHHHHHHHHHEEEEEEEECCSSCSSS-CSCCEEEEEEEEB
T ss_pred             HHHHHHHC-CCC-CEEE-EEECCCH----HHCCH--HHHHHHHHHHHCCEEEEEEECCCCCCCC-CCCCEEEEEEECC
T ss_conf             99999973-789-7699-9956820----10100--0079999998629189999787044789-9997699999899


No 75 
>3hnr_A Probable methyltransferase BT9727_4108; structural genomics, PSI-2, protein structure initiative; 2.80A {Bacillus thuringiensis serovarkonkukian}
Probab=98.57  E-value=5.7e-08  Score=68.53  Aligned_cols=72  Identities=31%  Similarity=0.360  Sum_probs=57.6

Q ss_pred             HHHHHHCCCCCCCEEEEECCCCCHHHHHHHHCCCCEEEEECCCCCCHHHHHHHHHHHHCCCCCCHHHHCCCCHHHH
Q ss_conf             9999971989998799975898823467750235259984255430368878753220012200000001431552
Q gi|254780398|r   37 KKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKF  112 (284)
Q Consensus        37 ~~iv~~~~~~~~~~VlEIGpG~G~LT~~Ll~~~~~~v~aiEiD~~~~~~l~~~~~~~~~~~~ii~~Dal~~d~~~~  112 (284)
                      +.+++.+...++..|||||||+|.++..+++.+ .+++++|+.+.+++.+++++.   ++++++++|+..+++++-
T Consensus        35 ~~~l~~~~~~~~~~vLDiGcG~G~~~~~l~~~~-~~v~gvD~S~~mi~~a~~k~~---~~~~~~~~d~~~~~~~~~  106 (220)
T 3hnr_A           35 EDILEDVVNKSFGNVLEFGVGTGNLTNKLLLAG-RTVYGIEPSREMRMIAKEKLP---KEFSITEGDFLSFEVPTS  106 (220)
T ss_dssp             HHHHHHHHHTCCSEEEEECCTTSHHHHHHHHTT-CEEEEECSCHHHHHHHHHHSC---TTCCEESCCSSSCCCCSC
T ss_pred             HHHHHHHHCCCCCEEEEECCCCCHHHHHHHHCC-CEEEEEECCHHHHHHHHHCCC---CCCHHHHHHHHHHCCCCC
T ss_conf             999998426697939997287859999999779-989999583577899874256---541033444544401776


No 76 
>3grz_A L11 mtase, ribosomal protein L11 methyltransferase; methylase, SAM-binding domain, PSI-2, NYSGXRC, structural genomics; 2.00A {Lactobacillus delbrueckii subsp}
Probab=98.57  E-value=1e-07  Score=66.91  Aligned_cols=83  Identities=19%  Similarity=0.262  Sum_probs=59.5

Q ss_pred             CCCCCEEEEECCCCCHHHHHHHHCCCCEEEEECCCCCCHHHHHHHHHHHH-CCCCCCHHHHCCCCHHHHCCCCCCEEEEE
Q ss_conf             89998799975898823467750235259984255430368878753220-01220000000143155213322201120
Q gi|254780398|r   45 SLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQHP-NRLEIIQDDALKVDFEKFFNISSPIRIIA  123 (284)
Q Consensus        45 ~~~~~~VlEIGpG~G~LT~~Ll~~~~~~v~aiEiD~~~~~~l~~~~~~~~-~~~~ii~~Dal~~d~~~~~~~~~~~~vvg  123 (284)
                      +.++..|||+|||.|.++..+++.++.+|+++|+|+..++.++++...+. ..+....+|.+.. ..     +.--.|++
T Consensus        58 ~~~~~~VLDlGcGsG~~~~~~ak~g~~~V~~iDis~~al~~A~~N~~~n~~~~~~~~~~~~~~~-~~-----~~fD~Iva  131 (205)
T 3grz_A           58 MVKPLTVADVGTGSGILAIAAHKLGAKSVLATDISDESMTAAEENAALNGIYDIALQKTSLLAD-VD-----GKFDLIVA  131 (205)
T ss_dssp             CSSCCEEEEETCTTSHHHHHHHHTTCSEEEEEESCHHHHHHHHHHHHHTTCCCCEEEESSTTTT-CC-----SCEEEEEE
T ss_pred             CCCCCEEEEEECCHHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHCCCCCEEEEECCHHHC-CC-----CCCCEEEE
T ss_conf             7995999999526229999998759968999989899999999999973766768873434440-45-----55689998


Q ss_pred             CCCHHHHHHH
Q ss_conf             2322467889
Q gi|254780398|r  124 NLPYNIGTRL  133 (284)
Q Consensus       124 NLPYnIss~I  133 (284)
                      |+++..--.+
T Consensus       132 ni~~~~l~~l  141 (205)
T 3grz_A          132 NILAEILLDL  141 (205)
T ss_dssp             ESCHHHHHHH
T ss_pred             CCCHHHHHHH
T ss_conf             5878899999


No 77 
>3a27_A TYW2, uncharacterized protein MJ1557; wybutosine modification, transferase; HET: SAM; 2.00A {Methanocaldococcus jannaschii}
Probab=98.57  E-value=5.5e-08  Score=68.61  Aligned_cols=108  Identities=24%  Similarity=0.237  Sum_probs=74.8

Q ss_pred             CCCCCCCCCCH-------H-HHH--HHHHHCCCCCCCEEEEECCCCCHHHHHHHHC-CCCEEEEECCCCCCHHHHHHHHH
Q ss_conf             36584112398-------9-999--9999719899987999758988234677502-35259984255430368878753
Q gi|254780398|r   23 KYMGQNFLLDL-------N-ILK--KIAESSGSLDGITVIEIGAGPGNLTQMLLTL-GARKVIVIEKDQQFFPILKDISS   91 (284)
Q Consensus        23 k~lGQnFL~d~-------~-i~~--~iv~~~~~~~~~~VlEIGpG~G~LT~~Ll~~-~~~~v~aiEiD~~~~~~l~~~~~   91 (284)
                      |.-|-.|.+|.       + ..+  ++++.  +.+++.||++|+|.|.+|..+++. ++..|+|+|+++..++.++++..
T Consensus        87 ~E~g~~f~~D~~kvyfs~r~~~Er~ri~~~--v~~ge~VlDl~aG~G~~~i~~ak~~~~~~V~aiDinp~av~~l~~N~~  164 (272)
T 3a27_A           87 KEYGCLFKLDVAKIMWSQGNIEERKRMAFI--SNENEVVVDMFAGIGYFTIPLAKYSKPKLVYAIEKNPTAYHYLCENIK  164 (272)
T ss_dssp             EETTEEEEEETTTSCCCGGGHHHHHHHHTS--CCTTCEEEETTCTTTTTHHHHHHHTCCSEEEEEECCHHHHHHHHHHHH
T ss_pred             EECCEEEEEECCEEEECCCCHHHHHHHHHC--CCCCCEEEEECCCCCHHHHHHHHCCCCEEEEEEECCHHHHHHHHHHHH
T ss_conf             989989998154479889877999998734--589999999378658899998750695099999599999999999999


Q ss_pred             HHH-CCCCCCHHHHCCCCHHHHCCCCCCEEEEECCCHHHHHHHHHHHH
Q ss_conf             220-01220000000143155213322201120232246788999998
Q gi|254780398|r   92 QHP-NRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWI  138 (284)
Q Consensus        92 ~~~-~~~~ii~~Dal~~d~~~~~~~~~~~~vvgNLPYnIss~Il~~ll  138 (284)
                      .+. .+...+++|+.++.+..-+     -+|+-|+|+.- .+.+...+
T Consensus       165 ~N~v~n~~~i~~D~r~~~~~~~f-----D~Vimn~p~~s-~~fl~~a~  206 (272)
T 3a27_A          165 LNKLNNVIPILADNRDVELKDVA-----DRVIMGYVHKT-HKFLDKTF  206 (272)
T ss_dssp             HTTCSSEEEEESCGGGCCCTTCE-----EEEEECCCSSG-GGGHHHHH
T ss_pred             HCCCCCEEEEECCCCCCCCCCCC-----CEEEECCCCCH-HHHHHHHH
T ss_conf             84999759992776534557888-----89997895127-99999999


No 78 
>2pjd_A Ribosomal RNA small subunit methyltransferase C; gene duplication, RNA modification, SAM binding; 2.10A {Escherichia coli}
Probab=98.56  E-value=3.9e-08  Score=69.54  Aligned_cols=102  Identities=13%  Similarity=0.167  Sum_probs=74.6

Q ss_pred             CCHHHHHHHHHHCCCCCCCEEEEECCCCCHHHHHHHHCCCC-EEEEECCCCCCHHHHHHHHHHHHCCCCCCHHHHCCCCH
Q ss_conf             39899999999719899987999758988234677502352-59984255430368878753220012200000001431
Q gi|254780398|r   31 LDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGAR-KVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDF  109 (284)
Q Consensus        31 ~d~~i~~~iv~~~~~~~~~~VlEIGpG~G~LT~~Ll~~~~~-~v~aiEiD~~~~~~l~~~~~~~~~~~~ii~~Dal~~d~  109 (284)
                      +|.. .+-+.+++....+..|||+|||.|.++..++++++. +|+++|+++..++.+++....+.-..+++.+|.+.. .
T Consensus       181 lD~g-t~lLl~~l~~~~~~~VLDlGcG~G~l~~~la~~~p~~~v~~vD~s~~al~~ar~n~~~n~l~~~~~~~d~~~~-~  258 (343)
T 2pjd_A          181 LDVG-SQLLLSTLTPHTKGKVLDVGCGAGVLSVAFARHSPKIRLTLCDVSAPAVEASRATLAANGVEGEVFASNVFSE-V  258 (343)
T ss_dssp             CCHH-HHHHHHHSCTTCCSBCCBTTCTTSHHHHHHHHHCTTCBCEEEESBHHHHHHHHHHHHHTTCCCEEEECSTTTT-C
T ss_pred             CCHH-HHHHHHHCCCCCCCEEEEECCCCCHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHCCCCEEEEECCCHHC-C
T ss_conf             6999-9999985650589829993252779999999978997899998999999999999998499379996440122-6


Q ss_pred             HHHCCCCCCEEEEECCCHHH----HHHHHHHHHH
Q ss_conf             55213322201120232246----7889999985
Q gi|254780398|r  110 EKFFNISSPIRIIANLPYNI----GTRLLFNWIS  139 (284)
Q Consensus       110 ~~~~~~~~~~~vvgNLPYnI----ss~Il~~ll~  139 (284)
                      +.     .--.|+.|.||+.    ...+...++.
T Consensus       259 ~~-----~fD~Iv~NpPfh~g~~~~~~~~~~~i~  287 (343)
T 2pjd_A          259 KG-----RFDMIISNPPFHDGMQTSLDAAQTLIR  287 (343)
T ss_dssp             CS-----CEEEEEECCCCCSSSHHHHHHHHHHHH
T ss_pred             CC-----CCCEEEECCCCCCCCCCCHHHHHHHHH
T ss_conf             65-----545899887501144468899999999


No 79 
>2pxx_A Uncharacterized protein MGC2408; structural genomics consortium, SGC, methyltransferase, LOC84291, transferase; HET: SAH; 1.30A {Homo sapiens}
Probab=98.56  E-value=4.4e-08  Score=69.24  Aligned_cols=79  Identities=18%  Similarity=0.243  Sum_probs=60.8

Q ss_pred             CCHHHHHHHHHHCCCCCCCEEEEECCCCCHHHHHHHHCCCCEEEEECCCCCCHHHHHHHHHHHHCCCCCCHHHHCCCCHH
Q ss_conf             39899999999719899987999758988234677502352599842554303688787532200122000000014315
Q gi|254780398|r   31 LDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFE  110 (284)
Q Consensus        31 ~d~~i~~~iv~~~~~~~~~~VlEIGpG~G~LT~~Ll~~~~~~v~aiEiD~~~~~~l~~~~~~~~~~~~ii~~Dal~~d~~  110 (284)
                      .+-.-+..++.. .+.++..|||||||+|.+|..|++.+..+|++|++++.+++.+++.....+ +++++.+|+.+++++
T Consensus        27 ~~~~~l~~~~~~-~l~~~~~iLDiGCG~G~~~~~L~~~g~~~v~giD~s~~~i~~~~~~~~~~~-~~~~~~~D~~~l~~~  104 (215)
T 2pxx_A           27 GDFSSFRALLEP-ELRPEDRILVLGCGNSALSYELFLGGFPNVTSVDYSSVVVAAMQACYAHVP-QLRWETMDVRKLDFP  104 (215)
T ss_dssp             CCHHHHHHHHGG-GCCTTCCEEEETCTTCSHHHHHHHTTCCCEEEEESCHHHHHHHHHHTTTCT-TCEEEECCTTSCCSC
T ss_pred             CCHHHHHHHHHH-HCCCCCEEEEECCCCCHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHCCCC-EEEEECCCCCCCCCC
T ss_conf             587899999996-389999899963777799999998489839998276256679999834786-354321454457789


Q ss_pred             H
Q ss_conf             5
Q gi|254780398|r  111 K  111 (284)
Q Consensus       111 ~  111 (284)
                      +
T Consensus       105 ~  105 (215)
T 2pxx_A          105 S  105 (215)
T ss_dssp             S
T ss_pred             C
T ss_conf             9


No 80 
>1zx0_A Guanidinoacetate N-methyltransferase; structural genomics, structural genomics consortium; HET: SAH; 1.86A {Homo sapiens} SCOP: c.66.1.16 PDB: 3orh_A* 1xcj_A* 1xcl_A* 1p1c_A* 1p1b_A* 1khh_A*
Probab=98.56  E-value=9e-08  Score=67.29  Aligned_cols=73  Identities=16%  Similarity=0.220  Sum_probs=59.5

Q ss_pred             HHHHHHHHCCCCCCCEEEEECCCCCHHHHHHHHCCCCEEEEECCCCCCHHHHHHHHHHHHCCCCCCHHHHCCCC
Q ss_conf             99999997198999879997589882346775023525998425543036887875322001220000000143
Q gi|254780398|r   35 ILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVD  108 (284)
Q Consensus        35 i~~~iv~~~~~~~~~~VlEIGpG~G~LT~~Ll~~~~~~v~aiEiD~~~~~~l~~~~~~~~~~~~ii~~Dal~~d  108 (284)
                      +.+..++.+. .++..|||||+|+|..+..++++++.++++||+++.+++.+++.+...++++.++.+|+....
T Consensus        49 ~~~~l~~~~~-~~g~rVLeiG~G~G~~a~~la~~~~~~vt~id~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~  121 (236)
T 1zx0_A           49 YMHALAAAAS-SKGGRVLEVGFGMAIAASKVQEAPIDEHWIIECNDGVFQRLRDWAPRQTHKVIPLKGLWEDVA  121 (236)
T ss_dssp             HHHHHHHHHT-TTCEEEEEECCTTSHHHHHHHTSCEEEEEEEECCHHHHHHHHHHGGGCSSEEEEEESCHHHHG
T ss_pred             HHHHHHHHHC-CCCCEEEEECCCCCHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHCCCCCCEEECHHHHHH
T ss_conf             9999997534-489849998888509999999729977999808989999999988755886202320088762


No 81 
>1i1n_A Protein-L-isoaspartate O-methyltransferase; S-adenosyl homocysteine, protein repair; HET: SAH; 1.50A {Homo sapiens} SCOP: c.66.1.7 PDB: 1kr5_A*
Probab=98.54  E-value=2.1e-07  Score=64.96  Aligned_cols=83  Identities=17%  Similarity=0.205  Sum_probs=65.9

Q ss_pred             CCCCCCCHHHHHHHHHHC--CCCCCCEEEEECCCCCHHHHHHHHC-C-CCEEEEECCCCCCHHHHHHHHHHHH------C
Q ss_conf             841123989999999971--9899987999758988234677502-3-5259984255430368878753220------0
Q gi|254780398|r   26 GQNFLLDLNILKKIAESS--GSLDGITVIEIGAGPGNLTQMLLTL-G-ARKVIVIEKDQQFFPILKDISSQHP------N   95 (284)
Q Consensus        26 GQnFL~d~~i~~~iv~~~--~~~~~~~VlEIGpG~G~LT~~Ll~~-~-~~~v~aiEiD~~~~~~l~~~~~~~~------~   95 (284)
                      || ++..+.+..++.+.+  ++.+++.|||||+|.|.+|..|++. + ...|++||+++.+++..++.+....      .
T Consensus        55 ~~-~is~P~~~a~~le~L~~~~~pg~~VLdiG~GsGy~ta~la~lvg~~g~V~~iE~~~~l~~~a~~~l~~~~~~~~~~~  133 (226)
T 1i1n_A           55 QA-TISAPHMHAYALELLFDQLHEGAKALDVGSGSGILTACFARMVGCTGKVIGIDHIKELVDDSVNNVRKDDPTLLSSG  133 (226)
T ss_dssp             TE-EECCHHHHHHHHHHTTTTSCTTCEEEEETCTTSHHHHHHHHHHCTTCEEEEEESCHHHHHHHHHHHHHHCTHHHHTS
T ss_pred             CC-EECHHHHHHHHHHHHHHHCCCCCEEEEECCCCCHHHHHHHHHCCCCCEEEEECCCHHHHHHHHHHHHHCCCCCCEEE
T ss_conf             97-75588999999997253089999899977888999999999708886499986889999999999865486431023


Q ss_pred             CCCCCHHHHCCCCH
Q ss_conf             12200000001431
Q gi|254780398|r   96 RLEIIQDDALKVDF  109 (284)
Q Consensus        96 ~~~ii~~Dal~~d~  109 (284)
                      +++++.+|+..-..
T Consensus       134 ~~~~~~gd~~~~~~  147 (226)
T 1i1n_A          134 RVQLVVGDGRMGYA  147 (226)
T ss_dssp             SEEEEESCGGGCCG
T ss_pred             EEEEEECCCCCCCC
T ss_conf             46799656456665


No 82 
>3bus_A REBM, methyltransferase; rebeccamycin synthesis; HET: SAH; 2.65A {Lechevalieria aerocolonigenes}
Probab=98.54  E-value=1.9e-07  Score=65.33  Aligned_cols=78  Identities=19%  Similarity=0.226  Sum_probs=62.8

Q ss_pred             HHHHHHHHHHCCCCCCCEEEEECCCCCHHHHHHHHCCCCEEEEECCCCCCHHHHHHHHHHH--HCCCCCCHHHHCCCCHH
Q ss_conf             8999999997198999879997589882346775023525998425543036887875322--00122000000014315
Q gi|254780398|r   33 LNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQH--PNRLEIIQDDALKVDFE  110 (284)
Q Consensus        33 ~~i~~~iv~~~~~~~~~~VlEIGpG~G~LT~~Ll~~~~~~v~aiEiD~~~~~~l~~~~~~~--~~~~~ii~~Dal~~d~~  110 (284)
                      .+.++++++.+++.+++.|||||||+|.+|..+++....+|+++++.+.++...++.....  ..++.+..+|+....++
T Consensus        47 ~~~~~~l~~~~~l~~g~~VLDiGcG~G~~~~~~~~~~~~~v~gvD~s~~~~~~~~~~~~~~~~~~~~~~~~~d~~~l~~~  126 (273)
T 3bus_A           47 DRLTDEMIALLDVRSGDRVLDVGCGIGKPAVRLATARDVRVTGISISRPQVNQANARATAAGLANRVTFSYADAMDLPFE  126 (273)
T ss_dssp             HHHHHHHHHHSCCCTTCEEEEESCTTSHHHHHHHHHSCCEEEEEESCHHHHHHHHHHHHHTTCTTTEEEEECCTTSCCSC
T ss_pred             HHHHHHHHHHCCCCCCCEEEEECCCCCHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHHHCCCCEEECCCCCCCCCCCC
T ss_conf             99999999866989979899978979988999998459889999784888999999998717773210013443468877


No 83 
>3dh0_A SAM dependent methyltransferase; cystal structure, PSI-2, NYSGXRC, structural genomics, protein structure initiative; HET: SAM; 2.72A {Aquifex aeolicus}
Probab=98.53  E-value=1.1e-07  Score=66.76  Aligned_cols=74  Identities=19%  Similarity=0.364  Sum_probs=61.1

Q ss_pred             HHHHHHCCCCCCCEEEEECCCCCHHHHHHHHCC-C-CEEEEECCCCCCHHHHHHHHHHHH-CCCCCCHHHHCCCCHH
Q ss_conf             999997198999879997589882346775023-5-259984255430368878753220-0122000000014315
Q gi|254780398|r   37 KKIAESSGSLDGITVIEIGAGPGNLTQMLLTLG-A-RKVIVIEKDQQFFPILKDISSQHP-NRLEIIQDDALKVDFE  110 (284)
Q Consensus        37 ~~iv~~~~~~~~~~VlEIGpG~G~LT~~Ll~~~-~-~~v~aiEiD~~~~~~l~~~~~~~~-~~~~ii~~Dal~~d~~  110 (284)
                      +++++.+++.++++|||||||.|..|..+++.. + .+|+++|+.+.+++.++++..... .+++++.+|+.+.+++
T Consensus        27 ~~~l~~~~l~~g~~VLDiGcG~G~~~~~la~~~~~~~~v~giD~s~~~i~~a~~~~~~~~~~~v~~~~~d~~~lp~~  103 (219)
T 3dh0_A           27 EKVLKEFGLKEGMTVLDVGTGAGFYLPYLSKMVGEKGKVYAIDVQEEMVNYAWEKVNKLGLKNVEVLKSEENKIPLP  103 (219)
T ss_dssp             HHHHHHHTCCTTCEEEESSCTTCTTHHHHHHHHTTTCEEEEEESCHHHHHHHHHHHHHHTCTTEEEEECBTTBCSSC
T ss_pred             HHHHHHCCCCCCCEEEEECCCCCHHHHHHHHHCCCCEEEEEEEEHHHHHHHHHHHHHHHHCCEEHHHHHHHHCCCCC
T ss_conf             99998659899399999878888779999975089839999850037788999976764022100100033327755


No 84 
>1nv8_A HEMK protein; class I adoMet-dependent methyltransferase; HET: SAM MEQ; 2.20A {Thermotoga maritima} SCOP: c.66.1.30 PDB: 1nv9_A* 1vq1_A* 1sg9_A*
Probab=98.53  E-value=1.6e-07  Score=65.71  Aligned_cols=105  Identities=23%  Similarity=0.339  Sum_probs=74.9

Q ss_pred             CCCCCCCCCHHH----------HHHHHHHCCCCCCCEEEEECCCCCHHHHHHHHCCCCEEEEECCCCCCHHHHHHHHHHH
Q ss_conf             658411239899----------9999997198999879997589882346775023525998425543036887875322
Q gi|254780398|r   24 YMGQNFLLDLNI----------LKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQH   93 (284)
Q Consensus        24 ~lGQnFL~d~~i----------~~~iv~~~~~~~~~~VlEIGpG~G~LT~~Ll~~~~~~v~aiEiD~~~~~~l~~~~~~~   93 (284)
                      =+|-.|.+|+++          ++.+.+.........|+|+|+|.|++...+++.....|+++|+++..+..++++...+
T Consensus        90 F~g~~f~V~~~VLIPRpeTE~Lve~~~~~~~~~~~~~vlDlgtGSG~I~isla~~p~~~V~avDiS~~Al~vA~~Na~~~  169 (284)
T 1nv8_A           90 FMGLSFLVEEGVFVPRPETEELVELALELIRKYGIKTVADIGTGSGAIGVSVAKFSDAIVFATDVSSKAVEIARKNAERH  169 (284)
T ss_dssp             ETTEEEECCTTSCCCCTTHHHHHHHHHHHHHHHTCCEEEEESCTTSHHHHHHHHHSSCEEEEEESCHHHHHHHHHHHHHT
T ss_pred             ECCEEEEEECCCCCCCCHHHHHHHHHHHHHHCCCCCEEEEEECCHHHHHHHHHHHHCCCEEEECCCHHHHHHHHHHHHHC
T ss_conf             96838998166412887589999988876503788679986046059887676520145167639799999999999844


Q ss_pred             --HCCCCCCHHHHCCCCHHHHCCCCCCEEEEECCCHHHHH
Q ss_conf             --00122000000014315521332220112023224678
Q gi|254780398|r   94 --PNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGT  131 (284)
Q Consensus        94 --~~~~~ii~~Dal~~d~~~~~~~~~~~~vvgNLPYnIss  131 (284)
                        .+++.++++|.+.......   +.---||+|.||==++
T Consensus       170 ~~~~~~~~~~~d~~~~~~~~~---~~fDlIVSNPPYI~~~  206 (284)
T 1nv8_A          170 GVSDRFFVRKGEFLEPFKEKF---ASIEMILSNPPYVKSS  206 (284)
T ss_dssp             TCTTSEEEEESSTTGGGGGGT---TTCCEEEECCCCBCGG
T ss_pred             CCCCEEEEEECCCCCCCCCCC---CCEEEEEECCCCCCCH
T ss_conf             898629999632100141126---7530899678888863


No 85 
>3dmg_A Probable ribosomal RNA small subunit methyltransferase; monomethyltranserase, 16S rRNA methyltransferase, N2 G1207 methyltransferase; HET: SAH; 1.55A {Thermus thermophilus} PDB: 3dmf_A* 3dmh_A* 2zul_A* 2zwv_A*
Probab=98.52  E-value=2.1e-07  Score=65.03  Aligned_cols=90  Identities=26%  Similarity=0.351  Sum_probs=65.0

Q ss_pred             HHHHHHHC--CCCCCCEEEEECCCCCHHHHHHHHCCCCEEEEECCCCCCHHHHHHHHHHHHCCCCCCHHHHCCCCHHHHC
Q ss_conf             99999971--9899987999758988234677502352599842554303688787532200122000000014315521
Q gi|254780398|r   36 LKKIAESS--GSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFF  113 (284)
Q Consensus        36 ~~~iv~~~--~~~~~~~VlEIGpG~G~LT~~Ll~~~~~~v~aiEiD~~~~~~l~~~~~~~~~~~~ii~~Dal~~d~~~~~  113 (284)
                      ++.+....  ...+++.|||+|||.|.++..+++.++ +++++|+|+.+++.+++......-+.+++.+|+.....+   
T Consensus       220 l~~l~~~~~~~~~~g~~VLDlGcG~G~~~~~la~~~~-~v~~vD~s~~~l~~a~~~~~~~~~~~~~~~~d~~~~~~~---  295 (381)
T 3dmg_A          220 LEALQERLGPEGVRGRQVLDLGAGYGALTLPLARMGA-EVVGVEDDLASVLSLQKGLEANALKAQALHSDVDEALTE---  295 (381)
T ss_dssp             HHHHHHHHCTTTTTTCEEEEETCTTSTTHHHHHHTTC-EEEEEESBHHHHHHHHHHHHHTTCCCEEEECSTTTTSCT---
T ss_pred             HHHHHHHHCCCCCCCCEEEEEEEECCHHHHHHHHCCC-EEECCCCCHHHHHHHHHHHHHCCCCEEEEECCCCCCCCC---
T ss_conf             9987875266689999899996010488897675198-874146999999999999998299738853010014466---


Q ss_pred             CCCCCEEEEECCCHHHH
Q ss_conf             33222011202322467
Q gi|254780398|r  114 NISSPIRIIANLPYNIG  130 (284)
Q Consensus       114 ~~~~~~~vvgNLPYnIs  130 (284)
                       .+.--.|++|.||+..
T Consensus       296 -~~~fD~Iv~n~~~h~~  311 (381)
T 3dmg_A          296 -EARFDIIVTNPPFHVG  311 (381)
T ss_dssp             -TCCEEEEEECCCCCTT
T ss_pred             -CCCEEEEEECCCHHHC
T ss_conf             -7986899989324533


No 86 
>2p35_A Trans-aconitate 2-methyltransferase; SAM dependent methyltransferase, structural genomics, PSI-2, protein structure initiative; HET: SAH; 1.95A {Agrobacterium tumefaciens str}
Probab=98.52  E-value=1.3e-07  Score=66.38  Aligned_cols=85  Identities=18%  Similarity=0.206  Sum_probs=63.8

Q ss_pred             HHHHHHHHCCCCCCCEEEEECCCCCHHHHHHHHC-CCCEEEEECCCCCCHHHHHHHHHHHHCCCCCCHHHHCCCCHHHHC
Q ss_conf             9999999719899987999758988234677502-352599842554303688787532200122000000014315521
Q gi|254780398|r   35 ILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTL-GARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFF  113 (284)
Q Consensus        35 i~~~iv~~~~~~~~~~VlEIGpG~G~LT~~Ll~~-~~~~v~aiEiD~~~~~~l~~~~~~~~~~~~ii~~Dal~~d~~~~~  113 (284)
                      -+...+..+++.++..|||||||+|.+|..|+++ ++.+|+++|+.+.+++.+++..   + ++++..+|+.++.+.+-+
T Consensus        21 ~~~~ll~~~~~~~~~rVLDiGCGtG~~t~~la~~~~~~~v~gvD~S~~ml~~A~~~~---~-~v~~~~~d~~~~~~~~~f   96 (259)
T 2p35_A           21 PARDLLAQVPLERVLNGYDLGCGPGNSTELLTDRYGVNVITGIDSDDDMLEKAADRL---P-NTNFGKADLATWKPAQKA   96 (259)
T ss_dssp             HHHHHHTTCCCSCCSSEEEETCTTTHHHHHHHHHHCTTSEEEEESCHHHHHHHHHHS---T-TSEEEECCTTTCCCSSCE
T ss_pred             HHHHHHHCCCCCCCCEEEEECCCCCHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHC---C-CCCCEEEEHHHCCCCCCC
T ss_conf             999999528888989899981628699999998789987999989879999999725---6-631201424212435455


Q ss_pred             CCCCCEEEEECCCHH
Q ss_conf             332220112023224
Q gi|254780398|r  114 NISSPIRIIANLPYN  128 (284)
Q Consensus       114 ~~~~~~~vvgNLPYn  128 (284)
                           -.|++|.-++
T Consensus        97 -----D~V~s~~~l~  106 (259)
T 2p35_A           97 -----DLLYANAVFQ  106 (259)
T ss_dssp             -----EEEEEESCGG
T ss_pred             -----CEECCCCEEE
T ss_conf             -----5641201577


No 87 
>3mgg_A Methyltransferase; NYSGXRC, PSI-II, protein structure initiative, structural genomics, NEW YORK SGX research center for structural genomics; 1.86A {Methanosarcina mazei}
Probab=98.48  E-value=1.6e-07  Score=65.75  Aligned_cols=80  Identities=18%  Similarity=0.267  Sum_probs=63.9

Q ss_pred             CCCCCCHHHHHHHHHHCCCCCCCEEEEECCCCCHHHHHHHHCCCC-EEEEECCCCCCHHHHHHHHHHH-HCCCCCCHHHH
Q ss_conf             411239899999999719899987999758988234677502352-5998425543036887875322-00122000000
Q gi|254780398|r   27 QNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGAR-KVIVIEKDQQFFPILKDISSQH-PNRLEIIQDDA  104 (284)
Q Consensus        27 QnFL~d~~i~~~iv~~~~~~~~~~VlEIGpG~G~LT~~Ll~~~~~-~v~aiEiD~~~~~~l~~~~~~~-~~~~~ii~~Da  104 (284)
                      |+-+    ..+.+.+.+...+++.|||||||+|.++..|++.++. +|+++|+++.+.+.++...... .++++++.+|+
T Consensus        21 q~~~----~~~~~~~~~~~~pg~rVLDiGcG~G~~~~~la~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~v~~~~~d~   96 (276)
T 3mgg_A           21 QAET----LEKLLHHDTVYPPGAKVLEAGCGIGAQTVILAKNNPDAEITSIDISPESLEKARENTEKNGIKNVKFLQANI   96 (276)
T ss_dssp             --CH----HHHHHHTTCCCCTTCEEEETTCTTSHHHHHHHHHCTTSEEEEEESCHHHHHHHHHHHHHTTCCSEEEEECCG
T ss_pred             HHHH----HHHHHHHCCCCCCCCEEEEECCCCCHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHCCCCCCCEEECCH
T ss_conf             9999----999987556999999899955858899999998799978999979567632222112211556642153352


Q ss_pred             CCCCHH
Q ss_conf             014315
Q gi|254780398|r  105 LKVDFE  110 (284)
Q Consensus       105 l~~d~~  110 (284)
                      .+++++
T Consensus        97 ~~l~~~  102 (276)
T 3mgg_A           97 FSLPFE  102 (276)
T ss_dssp             GGCCSC
T ss_pred             HHCCCC
T ss_conf             320477


No 88 
>3bkw_A MLL3908 protein, S-adenosylmethionine dependent methyltransferase; NP_104914.1, methyltransferase domain, structural genomics; HET: MSE; 1.60A {Mesorhizobium loti MAFF303099}
Probab=98.48  E-value=2.8e-07  Score=64.22  Aligned_cols=93  Identities=12%  Similarity=0.240  Sum_probs=71.9

Q ss_pred             HHHHCCCCCCCCCCCCCCCCHHHHHHHHHHCCCCCCCEEEEECCCCCHHHHHHHHCCCCEEEEECCCCCCHHHHHHHHHH
Q ss_conf             99981898433658411239899999999719899987999758988234677502352599842554303688787532
Q gi|254780398|r   13 ILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQ   92 (284)
Q Consensus        13 ll~~~~~~p~k~lGQnFL~d~~i~~~iv~~~~~~~~~~VlEIGpG~G~LT~~Ll~~~~~~v~aiEiD~~~~~~l~~~~~~   92 (284)
                      ..+.|+-.+.-..|.|=......   +.+.+....|..|||||||+|..|..|++.++.+|+++|+.+.+++.+++....
T Consensus        12 f~~~y~~~~~~~~~~~~~~~~~~---~~~~~p~~~g~rVLDiGCG~G~~~~~l~~~~~~~V~gvD~S~~~l~~a~~~~~~   88 (243)
T 3bkw_A           12 FFAGYSQLGRSIEGLDGAAEWPA---LRAMLPEVGGLRIVDLGCGFGWFCRWAHEHGASYVLGLDLSEKMLARARAAGPD   88 (243)
T ss_dssp             -------------CGGGCTTHHH---HHHHSCCCTTCEEEEETCTTCHHHHHHHHTTCSEEEEEESCHHHHHHHHHTSCS
T ss_pred             HHHHHHHHHHCCCCHHHHHHHHH---HHHHCCCCCCCEEEEECCCCCHHHHHHHHCCCCEEEEECCHHHHHHHHHHHCCC
T ss_conf             99999862313003656377999---998579778899999788898999999975987899987579899999861344


Q ss_pred             HHCCCCCCHHHHCCCCHH
Q ss_conf             200122000000014315
Q gi|254780398|r   93 HPNRLEIIQDDALKVDFE  110 (284)
Q Consensus        93 ~~~~~~ii~~Dal~~d~~  110 (284)
                        .+++++.+|+.++.++
T Consensus        89 --~~v~~~~~d~~~~~~~  104 (243)
T 3bkw_A           89 --TGITYERADLDKLHLP  104 (243)
T ss_dssp             --SSEEEEECCGGGCCCC
T ss_pred             --CCCCCCCCCCCCCCCC
T ss_conf             --4333100233446655


No 89 
>2ex4_A Adrenal gland protein AD-003; methyltransferase, structural genomics, SGC, structural genomics consortium; HET: SAH; 1.75A {Homo sapiens} SCOP: c.66.1.42
Probab=98.46  E-value=4e-07  Score=63.24  Aligned_cols=88  Identities=16%  Similarity=0.089  Sum_probs=63.2

Q ss_pred             CCCCCCCEEEEECCCCCHHHHHHHHCCCCEEEEECCCCCCHHHHHHHHHHHH-CCCCCCHHHHCCCCHHHHCCCCCCEEE
Q ss_conf             1989998799975898823467750235259984255430368878753220-012200000001431552133222011
Q gi|254780398|r   43 SGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQHP-NRLEIIQDDALKVDFEKFFNISSPIRI  121 (284)
Q Consensus        43 ~~~~~~~~VlEIGpG~G~LT~~Ll~~~~~~v~aiEiD~~~~~~l~~~~~~~~-~~~~ii~~Dal~~d~~~~~~~~~~~~v  121 (284)
                      .+...+..|||||||+|.+|..|+.+.+.+|++||+.+.+++.+++.+.... .+++++++|+.++++++-   .-...+
T Consensus        75 ~~~~~~~~vLDiGcG~G~~~~~ll~~~~~~v~~vD~s~~~l~~ar~~~~~~~~~~v~~~~~d~~~l~~~~~---~fD~I~  151 (241)
T 2ex4_A           75 PNKTGTSCALDCGAGIGRITKRLLLPLFREVDMVDITEDFLVQAKTYLGEEGKRVRNYFCCGLQDFTPEPD---SYDVIW  151 (241)
T ss_dssp             --CCCCSEEEEETCTTTHHHHHTTTTTCSEEEEEESCHHHHHHHHHHTGGGGGGEEEEEECCGGGCCCCSS---CEEEEE
T ss_pred             CCCCCCCEEEEECCCCCHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHCCCCCEEEEECCHHHCCCCCC---CCCEEE
T ss_conf             57778876999015707869999970599899999999999999987765046634899578887157757---831899


Q ss_pred             EECCCHHHHHHH
Q ss_conf             202322467889
Q gi|254780398|r  122 IANLPYNIGTRL  133 (284)
Q Consensus       122 vgNLPYnIss~I  133 (284)
                      ....-++++.+-
T Consensus       152 ~~~vl~hl~d~~  163 (241)
T 2ex4_A          152 IQWVIGHLTDQH  163 (241)
T ss_dssp             EESCGGGSCHHH
T ss_pred             ECCCHHCCCCHH
T ss_conf             646510475678


No 90 
>1fbn_A MJ fibrillarin homologue; MJ proteins, ribosomal RNA processing, snoRNP, structural genomics, BSGC structure funded by NIH; 1.60A {Methanocaldococcus jannaschii} SCOP: c.66.1.3 PDB: 1g8s_A
Probab=98.46  E-value=4.8e-07  Score=62.79  Aligned_cols=99  Identities=17%  Similarity=0.176  Sum_probs=66.5

Q ss_pred             HHHHHH---HHCCCCCCCEEEEECCCCCHHHHHHHHCCCC-EEEEECCCCCCHHHHHHHHHHHHCCCCCCHHHHCCCCHH
Q ss_conf             999999---9719899987999758988234677502352-599842554303688787532200122000000014315
Q gi|254780398|r   35 ILKKIA---ESSGSLDGITVIEIGAGPGNLTQMLLTLGAR-KVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFE  110 (284)
Q Consensus        35 i~~~iv---~~~~~~~~~~VlEIGpG~G~LT~~Ll~~~~~-~v~aiEiD~~~~~~l~~~~~~~~~~~~ii~~Dal~~d~~  110 (284)
                      ++.-|.   +.+.+.+++.||++|||+|..|..+++..+. .|+|||+.+++++.++++....+| +..+.+|+......
T Consensus        59 l~a~i~~~l~~l~ikpg~~VLDlGcGtG~~~~~la~~~~~G~V~aVDiSp~mi~~a~~~a~~~~n-i~~i~~d~~~~~~~  137 (230)
T 1fbn_A           59 LAAAIIKGLKVMPIKRDSKILYLGASAGTTPSHVADIADKGIVYAIEYAPRIMRELLDACAEREN-IIPILGDANKPQEY  137 (230)
T ss_dssp             HHHHHHTTCCCCCCCTTCEEEEESCCSSHHHHHHHHHTTTSEEEEEESCHHHHHHHHHHTTTCTT-EEEEECCTTCGGGG
T ss_pred             HHHHHHHHHHHCCCCCCCEEEEECCCCCHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHCCC-CEEEEEECCCCCCC
T ss_conf             99999855762687999999996797798999999758996599997998999999987764487-31798413586423


Q ss_pred             HHCCCCCCE-EEEECCCHHHHHHHHHH
Q ss_conf             521332220-11202322467889999
Q gi|254780398|r  111 KFFNISSPI-RIIANLPYNIGTRLLFN  136 (284)
Q Consensus       111 ~~~~~~~~~-~vvgNLPYnIss~Il~~  136 (284)
                      ..  ..... .++..+.+--..+++++
T Consensus       138 ~~--~~~~vd~i~~~~~~~~~~~~~l~  162 (230)
T 1fbn_A          138 AN--IVEKVDVIYEDVAQPNQAEILIK  162 (230)
T ss_dssp             TT--TSCCEEEEEECCCSTTHHHHHHH
T ss_pred             CC--CCCEEEEEEEECCCHHHHHHHHH
T ss_conf             56--66359999710124278999999


No 91 
>1or8_A Protein arginine N-methyltransferase 1; protein arginine methylation, adoMet-dependent methylation, transferase; HET: SAH; 2.35A {Rattus norvegicus} SCOP: c.66.1.6 PDB: 1orh_A* 1ori_A*
Probab=98.45  E-value=1.7e-07  Score=65.64  Aligned_cols=92  Identities=23%  Similarity=0.208  Sum_probs=66.9

Q ss_pred             CCCCCCCCCCCC--CCCHHHHHHHHHHC----CCCCCCEEEEECCCCCHHHHHHHHCCCCEEEEECCCCCCHHHHHHHHH
Q ss_conf             898433658411--23989999999971----989998799975898823467750235259984255430368878753
Q gi|254780398|r   18 KIIPKKYMGQNF--LLDLNILKKIAESS----GSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISS   91 (284)
Q Consensus        18 ~~~p~k~lGQnF--L~d~~i~~~iv~~~----~~~~~~~VlEIGpG~G~LT~~Ll~~~~~~v~aiEiD~~~~~~l~~~~~   91 (284)
                      -+..-..+++||  |.|..-.+...+.+    .+.+++.||+||+|+|.|+...++.||++|+|+|.. .++..+++...
T Consensus        22 ~~~~y~~~~~h~~ml~D~~r~~~y~~ai~~~~~~~~~~~VLDiG~G~G~ls~~aa~~Ga~~V~ave~s-~~~~~a~~~~~  100 (340)
T 1or8_A           22 YFDSYAHFGIHEEMLKDEVRTLTYRNSMFHNRHLFKDKVVLDVGSGTGILCMFAAKAGARKVIGIECS-SISDYAVKIVK  100 (340)
T ss_dssp             ------CCHHHHHHHHCHHHHHHHHHHHHTCHHHHTTCEEEEETCTTSHHHHHHHHTTCSEEEEEECS-THHHHHHHHHH
T ss_pred             HHCCCCCCHHHHHHHCCHHHHHHHHHHHHHCHHCCCCCEEEEECCCCCHHHHHHHHCCCCEEEEECCH-HHHHHHHHHHH
T ss_conf             02032351778977477777999999998563105949799983788799999998089889996461-99999999999


Q ss_pred             H--HHCCCCCCHHHHCCCCHH
Q ss_conf             2--200122000000014315
Q gi|254780398|r   92 Q--HPNRLEIIQDDALKVDFE  110 (284)
Q Consensus        92 ~--~~~~~~ii~~Dal~~d~~  110 (284)
                      .  ..++++++++|+.+++++
T Consensus       101 ~n~~~~~i~~~~~~~~~l~~~  121 (340)
T 1or8_A          101 ANKLDHVVTIIKGKVEEVELP  121 (340)
T ss_dssp             HTTCTTTEEEEESCTTTCCCS
T ss_pred             HCCCCCEEEEEEEEEEECCCC
T ss_conf             728783279997313430378


No 92 
>3gu3_A Methyltransferase; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; HET: SAH; 2.30A {Bacillus cereus atcc 14579} PDB: 2gh1_A
Probab=98.45  E-value=4.4e-07  Score=63.02  Aligned_cols=80  Identities=15%  Similarity=0.300  Sum_probs=62.7

Q ss_pred             CHHHHHHHHHHC-CCCCCCEEEEECCCCCHHHHHHHHCCC--CEEEEECCCCCCHHHHHHHHHHHHCCCCCCHHHHCCCC
Q ss_conf             989999999971-989998799975898823467750235--25998425543036887875322001220000000143
Q gi|254780398|r   32 DLNILKKIAESS-GSLDGITVIEIGAGPGNLTQMLLTLGA--RKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVD  108 (284)
Q Consensus        32 d~~i~~~iv~~~-~~~~~~~VlEIGpG~G~LT~~Ll~~~~--~~v~aiEiD~~~~~~l~~~~~~~~~~~~ii~~Dal~~d  108 (284)
                      ++..+.-+++.+ .+.+...|||||||+|.+|..+++..+  .+|+++|+++.+++.+++.+...+.+++++++|+.+++
T Consensus         6 n~dyl~fli~~v~k~~~~~~ILDiGcG~G~~~~~la~~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~d~~~~~   85 (284)
T 3gu3_A            6 NDDYVSFLVNTVWKITKPVHIVDYGCGYGYLGLVLMPLLPEGSKYTGIDSGETLLAEARELFRLLPYDSEFLEGDATEIE   85 (284)
T ss_dssp             CHHHHHHHHHTTSCCCSCCEEEEETCTTTHHHHHHTTTSCTTCEEEEEESCHHHHHHHHHHHHSSSSEEEEEESCTTTCC
T ss_pred             HHHHHHHHHHHHHCCCCCCEEEEECCCCCHHHHHHHHHCCCCCEEEEECCCHHHHHHHHHHHHHCCCCCEEECCCCCCCC
T ss_conf             77999999998635699897999548798999999985779988999849899999999866641420012001112479


Q ss_pred             HHH
Q ss_conf             155
Q gi|254780398|r  109 FEK  111 (284)
Q Consensus       109 ~~~  111 (284)
                      +++
T Consensus        86 ~~~   88 (284)
T 3gu3_A           86 LND   88 (284)
T ss_dssp             CSS
T ss_pred             CCC
T ss_conf             899


No 93 
>3g5t_A Trans-aconitate 3-methyltransferase; structural genomics, protein structure initiative, PSI, center for eukaryotic structural genomics; HET: MSE SAH T8N; 1.12A {Saccharomyces cerevisiae}
Probab=98.44  E-value=4.8e-07  Score=62.75  Aligned_cols=97  Identities=13%  Similarity=0.050  Sum_probs=66.9

Q ss_pred             HHHHHHHHHHCCCCCCCEEEEECCCCCHHHHHHHHCCC--CEEEEECCCCCCHHHHHHHHHHH---HCCCCCCHHHHCCC
Q ss_conf             89999999971989998799975898823467750235--25998425543036887875322---00122000000014
Q gi|254780398|r   33 LNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGA--RKVIVIEKDQQFFPILKDISSQH---PNRLEIIQDDALKV  107 (284)
Q Consensus        33 ~~i~~~iv~~~~~~~~~~VlEIGpG~G~LT~~Ll~~~~--~~v~aiEiD~~~~~~l~~~~~~~---~~~~~ii~~Dal~~  107 (284)
                      +..++.+++. .+.+++.|||||||+|.+|..|++.+.  .+|++||+.+.+++..++.....   ..++++..+|+.++
T Consensus        23 ~~~~~~l~~~-~~~~~~~VLDiGCGtG~~t~~la~~~~~~~~V~gvD~S~~mi~~a~~~~~~~~~~~~~v~~~~~dae~~  101 (299)
T 3g5t_A           23 SDFYKMIDEY-HDGERKLLVDVGCGPGTATLQMAQELKPFEQIIGSDLSATMIKTAEVIKEGSPDTYKNVSFKISSSDDF  101 (299)
T ss_dssp             HHHHHHHHHH-CCSCCSEEEEETCTTTHHHHHHHHHSSCCSEEEEEESCHHHHHHHHHHHHHCC-CCTTEEEEECCTTCC
T ss_pred             HHHHHHHHHC-CCCCCCEEEEECCCCCHHHHHHHHHCCCCCEEEEEECCHHHHHHHHHHHHHCCCCCCEEEEEEECHHHC
T ss_conf             9999999951-778999699982608899999999649998799985988999999999986366753246898337765


Q ss_pred             CHHHHC--CCCCCEEEEECCCHHHH
Q ss_conf             315521--33222011202322467
Q gi|254780398|r  108 DFEKFF--NISSPIRIIANLPYNIG  130 (284)
Q Consensus       108 d~~~~~--~~~~~~~vvgNLPYnIs  130 (284)
                      ++....  ..+.--.|+++.-.+..
T Consensus       102 ~~~~~~~~~~~~fD~V~~~~~~h~~  126 (299)
T 3g5t_A          102 KFLGADSVDKQKIDMITAVECAHWF  126 (299)
T ss_dssp             GGGCTTTTTSSCEEEEEEESCGGGS
T ss_pred             CCCCCCCCCCCCCCEEEEECCEECC
T ss_conf             4421234665565478870036315


No 94 
>2ipx_A RRNA 2'-O-methyltransferase fibrillarin; FBL, structural genomics, structural genomics consortium, SGC; HET: MTA; 1.82A {Homo sapiens}
Probab=98.44  E-value=5.3e-07  Score=62.48  Aligned_cols=98  Identities=16%  Similarity=0.118  Sum_probs=68.3

Q ss_pred             HHHHCCCCCCCEEEEECCCCCHHHHHHHHC-CC-CEEEEECCCCCCHHHHHHHHHHHHCCCCCCHHHHCCCCHHHHCCCC
Q ss_conf             999719899987999758988234677502-35-2599842554303688787532200122000000014315521332
Q gi|254780398|r   39 IAESSGSLDGITVIEIGAGPGNLTQMLLTL-GA-RKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNIS  116 (284)
Q Consensus        39 iv~~~~~~~~~~VlEIGpG~G~LT~~Ll~~-~~-~~v~aiEiD~~~~~~l~~~~~~~~~~~~ii~~Dal~~d~~~~~~~~  116 (284)
                      -++.+++.+++.|||+|||+|..|..+++. ++ .+|+|||+++.+++.+++.....+| +..+.+|+...+....... 
T Consensus        69 ~l~~l~lkpG~~VLDlG~G~G~~~~~la~~vg~~G~V~aVD~s~~~l~~a~~~a~~~~n-i~~i~~d~~~~~~~~~~~~-  146 (233)
T 2ipx_A           69 GVDQIHIKPGAKVLYLGAASGTTVSHVSDIVGPDGLVYAVEFSHRSGRDLINLAKKRTN-IIPVIEDARHPHKYRMLIA-  146 (233)
T ss_dssp             TCSCCCCCTTCEEEEECCTTSHHHHHHHHHHCTTCEEEEECCCHHHHHHHHHHHHHCTT-EEEECSCTTCGGGGGGGCC-
T ss_pred             CHHHCCCCCCCEEEEECCCCCHHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHCCC-CCEEEEECCCCHHCCCCCC-
T ss_conf             55525999999999965768989999999859996799997999999999997551466-6428975367011156652-


Q ss_pred             CCEEEEECCCHHHHHHHHHHHH
Q ss_conf             2201120232246788999998
Q gi|254780398|r  117 SPIRIIANLPYNIGTRLLFNWI  138 (284)
Q Consensus       117 ~~~~vvgNLPYnIss~Il~~ll  138 (284)
                      .-..++..+++.-...++++-+
T Consensus       147 ~vd~i~~~~~~~~~~~~~l~~~  168 (233)
T 2ipx_A          147 MVDVIFADVAQPDQTRIVALNA  168 (233)
T ss_dssp             CEEEEEECCCCTTHHHHHHHHH
T ss_pred             EEEEEECCCCCCHHHHHHHHHH
T ss_conf             6888531422651599999999


No 95 
>2fk8_A Methoxy mycolic acid synthase 4; S-adenosylmethionine-dependent methyltransferase fold; HET: SAM; 2.00A {Mycobacterium tuberculosis H37RV} SCOP: c.66.1.18 PDB: 2fk7_A* 3ha3_A* 3ha5_A* 3ha7_A*
Probab=98.42  E-value=4.2e-07  Score=63.16  Aligned_cols=75  Identities=11%  Similarity=0.089  Sum_probs=61.5

Q ss_pred             HHHHHHHHHHCCCCCCCEEEEECCCCCHHHHHHHHCCCCEEEEECCCCCCHHHHHHHHHHH--HCCCCCCHHHHCCC
Q ss_conf             8999999997198999879997589882346775023525998425543036887875322--00122000000014
Q gi|254780398|r   33 LNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQH--PNRLEIIQDDALKV  107 (284)
Q Consensus        33 ~~i~~~iv~~~~~~~~~~VlEIGpG~G~LT~~Ll~~~~~~v~aiEiD~~~~~~l~~~~~~~--~~~~~ii~~Dal~~  107 (284)
                      .+.++.+++.+++.+++.|||||||.|.++..+++....+|++|++++..+...++.....  .+.+.+..+|...+
T Consensus        76 ~~k~~~i~~~l~l~~g~rVLDIGCG~G~~a~~~a~~~g~~v~gi~is~~q~~~a~~~~~~~gl~~~~~~~~~d~~~~  152 (318)
T 2fk8_A           76 YAKVDLNLDKLDLKPGMTLLDIGCGWGTTMRRAVERFDVNVIGLTLSKNQHARCEQVLASIDTNRSRQVLLQGWEDF  152 (318)
T ss_dssp             HHHHHHHHTTSCCCTTCEEEEESCTTSHHHHHHHHHHCCEEEEEESCHHHHHHHHHHHHTSCCSSCEEEEESCGGGC
T ss_pred             HHHHHHHHHHCCCCCCCEEEEECCCCCHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHHCCCCCHHHHHHCCHHHH
T ss_conf             99999999963999999898978873699999998369638999899999999999987638741001654106550


No 96 
>3lkd_A Type I restriction-modification system methyltransferase subunit; Q5M500_STRT2, STU0711, NESG, SUR80, structural genomics, PSI-2; 2.25A {Streptococcus thermophilus}
Probab=98.42  E-value=1.4e-05  Score=53.77  Aligned_cols=190  Identities=12%  Similarity=0.088  Sum_probs=110.8

Q ss_pred             HHHHHCCCCCCCCCCCCCCCCHHHHHHHHHHC----CCCCCCEEEEECCCCCHHHHHHHHC----CCCEEEEECCCCCCH
Q ss_conf             99998189843365841123989999999971----9899987999758988234677502----352599842554303
Q gi|254780398|r   12 TILSHYKIIPKKYMGQNFLLDLNILKKIAESS----GSLDGITVIEIGAGPGNLTQMLLTL----GARKVIVIEKDQQFF   83 (284)
Q Consensus        12 ~ll~~~~~~p~k~lGQnFL~d~~i~~~iv~~~----~~~~~~~VlEIGpG~G~LT~~Ll~~----~~~~v~aiEiD~~~~   83 (284)
                      .+++++.-..++..||+| +-+.|++-||+.+    +...++.|++-.||.|.+-....+.    ....+.+.|+|+..+
T Consensus       183 ~li~~~a~~~~~~~Ge~~-TP~~Iv~lmv~l~~~~~~~~~~~~I~DPacGsGgfL~~a~~~~~~~~~~~~~G~e~~~~~~  261 (542)
T 3lkd_A          183 YLIGQFATDSGKKAGEFY-TPQPVAKLMTQIAFLGREDKQGFTLYDATMGSGSLLLNAKRYSRQPQTVVYFGQELNTSTY  261 (542)
T ss_dssp             HHHHHHHCC---CCSSCC-CCHHHHHHHHHHHHTTCTTCTTCEEEETTCTTSTTGGGHHHHCSCTTTCEEEEEESCHHHH
T ss_pred             HHHHHHHHHHCCCCCCCC-CCHHHHHHHHHHCCCCCCCCCCCEEECCCCCCCHHHHHHHHHHHHHCCEEEEEEECCHHHH
T ss_conf             999998886266477158-9889998578642556456789868327788455889888877500555787442667999


Q ss_pred             HHHHHHHH--HH-HCCCCCCHHHHCCCCHHHHCCCCCCEEEEECCCHHHHH--------------------------HHH
Q ss_conf             68878753--22-00122000000014315521332220112023224678--------------------------899
Q gi|254780398|r   84 PILKDISS--QH-PNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGT--------------------------RLL  134 (284)
Q Consensus        84 ~~l~~~~~--~~-~~~~~ii~~Dal~~d~~~~~~~~~~~~vvgNLPYnIss--------------------------~Il  134 (284)
                      ..++-.+-  .. ..++.+.++|.+.-++.... ...--.||||.||+...                          .++
T Consensus       262 ~la~~nl~l~g~~~~~~~i~~~d~l~~~~~~~~-~~~fD~Il~NPPfg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fi  340 (542)
T 3lkd_A          262 NLARMNMILHGVPIENQFLHNADTLDEDWPTQE-PTNFDGVLMNPPYSAKWSASSGFMDDPRFSPFGKLAPKSKADFAFL  340 (542)
T ss_dssp             HHHHHHHHHTTCCGGGEEEEESCTTTSCSCCSS-CCCBSEEEECCCTTCCCCCCGGGGGSTTTGGGSSCCCTTCCHHHHH
T ss_pred             HHHHHHHHHHCCCCCCCEEECCCCCCCCCCCCC-CCCEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHH
T ss_conf             999998787246542220320565444443232-3200035634886777674211123510013577899862599999


Q ss_pred             HHHHHHHCCCCCCCHHHHEEEHHHHHHHHHCCCHHHHHHHHHHHCCCCCEEEECCCCCCEECCCCCCCEEEEEECCCC
Q ss_conf             999852010000001102033447887530123123323454320133201200011000010578757887301258
Q gi|254780398|r  135 FNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFPSPKVTSTVIHFIPHL  212 (284)
Q Consensus       135 ~~ll~~~~~~~~~~~~vlmvQkEvA~Rl~a~pg~k~Yg~LSv~~q~~~~v~~~~~V~~~~F~P~PkVdS~vi~l~pk~  212 (284)
                      .+.+... ..++.+ +.+++-.-+    ...  +..+..+==..--.+.++.+...|.+.| |...|..+|+-|.+++
T Consensus       341 ~~~~~~L-~~~gG~-~~iV~p~g~----L~~--~~~e~~iR~~Lle~~~i~aII~LP~~~F-~~t~i~t~Il~l~K~k  409 (542)
T 3lkd_A          341 LHGYYHL-KQDNGV-MAIVLPHGV----LFR--GNAEGTIRKALLEEGAIDTVIGLPANIF-FNTSIPTTVIILKKNR  409 (542)
T ss_dssp             HHHHHTB-CTTTCE-EEEEEETHH----HHC--CTHHHHHHHHHHHTTCEEEEEECCSSCS-SSCCCCEEEEEECSSC
T ss_pred             HHHHHHH-CCCCCE-EEEEECCCC----CCC--CHHHHHHHHHHHHCCEEEEEEECCCCCC-CCCCCCEEEEEEECCC
T ss_conf             9999986-637872-999954742----235--6277788888763585899997997666-6889878999996898


No 97 
>1nt2_A Fibrillarin-like PRE-rRNA processing protein; adeMet, binding motif, coiled coil, RNA binding protein; HET: SAM; 2.90A {Archaeoglobus fulgidus dsm 4304} SCOP: c.66.1.3
Probab=98.41  E-value=1e-06  Score=60.69  Aligned_cols=103  Identities=15%  Similarity=0.042  Sum_probs=69.3

Q ss_pred             HHHHHHH--HCCCCCCCEEEEECCCCCHHHHHHHHCCC-CEEEEECCCCCCHHHHHHHHHHHHCCCCCCHHHHCCCCHHH
Q ss_conf             9999999--71989998799975898823467750235-25998425543036887875322001220000000143155
Q gi|254780398|r   35 ILKKIAE--SSGSLDGITVIEIGAGPGNLTQMLLTLGA-RKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEK  111 (284)
Q Consensus        35 i~~~iv~--~~~~~~~~~VlEIGpG~G~LT~~Ll~~~~-~~v~aiEiD~~~~~~l~~~~~~~~~~~~ii~~Dal~~d~~~  111 (284)
                      ++.-|..  .+.+.+++.||++|||+|..+..+++... ..|+|||+.+++++.|+++....+| +..+.+|+.......
T Consensus        43 laa~i~~~~~l~ikpg~~VLDlG~GtG~~~~~la~~~~~g~V~avD~s~~~i~~a~~~a~~~~n-~~~i~~~~~~~~~~~  121 (210)
T 1nt2_A           43 LAAMILKGHRLKLRGDERVLYLGAASGTTVSHLADIVDEGIIYAVEYSAKPFEKLLELVRERNN-IIPLLFDASKPWKYS  121 (210)
T ss_dssp             HHHHHHTSCCCCCCSSCEEEEETCTTSHHHHHHHHHTTTSEEEEECCCHHHHHHHHHHHHHCSS-EEEECSCTTCGGGTT
T ss_pred             HHHHHHCCCCCCCCCCCEEEEECCCCCHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHCCC-EEEEEECCCCCCCCC
T ss_conf             9999868776688998999995688888899999743698599996999999999977864897-079994056741122


Q ss_pred             HCCCCCCEEEEECCCHHHHHHHHHHHHH
Q ss_conf             2133222011202322467889999985
Q gi|254780398|r  112 FFNISSPIRIIANLPYNIGTRLLFNWIS  139 (284)
Q Consensus       112 ~~~~~~~~~vvgNLPYnIss~Il~~ll~  139 (284)
                      ... .....++..+++.-..+++.+=+.
T Consensus       122 ~~~-~~v~~i~~~~~~~~~~~~~l~~~~  148 (210)
T 1nt2_A          122 GIV-EKVDLIYQDIAQKNQIEILKANAE  148 (210)
T ss_dssp             TTC-CCEEEEEECCCSTTHHHHHHHHHH
T ss_pred             CCC-CEEEEEEEECCCHHHHHHHHHHHH
T ss_conf             433-213588720236156899999999


No 98 
>3ofk_A Nodulation protein S; NODS, N-methyltransferase, SAH, SAM, NOD factor, fixation, symbiosis, alpha/beta structure; HET: SAH; 1.85A {Bradyrhizobium SP} PDB: 3ofj_A*
Probab=98.40  E-value=9.3e-07  Score=61.00  Aligned_cols=87  Identities=17%  Similarity=0.228  Sum_probs=62.6

Q ss_pred             HHHHCCCCCCCEEEEECCCCCHHHHHHHHCCCCEEEEECCCCCCHHHHHHHHHHHHCCCCCCHHHHCCCCHHHHCCCCCC
Q ss_conf             99971989998799975898823467750235259984255430368878753220012200000001431552133222
Q gi|254780398|r   39 IAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSP  118 (284)
Q Consensus        39 iv~~~~~~~~~~VlEIGpG~G~LT~~Ll~~~~~~v~aiEiD~~~~~~l~~~~~~~~~~~~ii~~Dal~~d~~~~~~~~~~  118 (284)
                      +...+...+...|||||||+|.+|..|++++ .+|+++|+++.+++.+++.....+ ++++..+|+.+.....-+    .
T Consensus        43 l~~~l~~~~~~~vLDvGcG~G~~~~~la~~~-~~v~gvD~s~~~l~~a~~~~~~~~-~i~~~~~d~~~~~~~~~f----D  116 (216)
T 3ofk_A           43 LRLSLSSGAVSNGLEIGCAAGAFTEKLAPHC-KRLTVIDVMPRAIGRACQRTKRWS-HISWAATDILQFSTAELF----D  116 (216)
T ss_dssp             HHHHTTTSSEEEEEEECCTTSHHHHHHGGGE-EEEEEEESCHHHHHHHHHHTTTCS-SEEEEECCTTTCCCSCCE----E
T ss_pred             HHHHCCCCCCCEEEEEECCCCHHHHHHHHHC-CEEEEEECCHHHHHHHHHHHCCCC-EEECCCCCHHHHCCCCCC----C
T ss_conf             9984799899909996388989999999709-989999699899999998615462-231010202232357871----4


Q ss_pred             EEEEECCCHHHHH
Q ss_conf             0112023224678
Q gi|254780398|r  119 IRIIANLPYNIGT  131 (284)
Q Consensus       119 ~~vvgNLPYnIss  131 (284)
                      ..++.+.=|++..
T Consensus       117 ~V~~~~vl~~~~~  129 (216)
T 3ofk_A          117 LIVVAEVLYYLED  129 (216)
T ss_dssp             EEEEESCGGGSSS
T ss_pred             EEEECCCHHHCCC
T ss_conf             8998455775899


No 99 
>3g2m_A PCZA361.24; SAM-dependent methyltransferase, glycopeptide antibiotics biosynthesis, structural genomics; 2.00A {Amycolatopsis orientalis} PDB: 3g2o_A* 3g2p_A* 3g2q_A*
Probab=98.40  E-value=4.7e-07  Score=62.86  Aligned_cols=77  Identities=25%  Similarity=0.402  Sum_probs=60.7

Q ss_pred             HHHHHHHHHCCCCCCCEEEEECCCCCHHHHHHHHCCCCEEEEECCCCCCHHHHHHHHHHHH----CCCCCCHHHHCCCCH
Q ss_conf             9999999971989998799975898823467750235259984255430368878753220----012200000001431
Q gi|254780398|r   34 NILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQHP----NRLEIIQDDALKVDF  109 (284)
Q Consensus        34 ~i~~~iv~~~~~~~~~~VlEIGpG~G~LT~~Ll~~~~~~v~aiEiD~~~~~~l~~~~~~~~----~~~~ii~~Dal~~d~  109 (284)
                      .-...++..+.+.. ..|||+|||+|.+|..|+++++ +|+++|+++.+++.+++.....+    .+++++++|+.++++
T Consensus        70 ~~~~~~~~~~~p~~-g~vLDlGcG~G~~~~~la~~g~-~v~gvD~s~~ml~~a~~~~~~~~~~~~~~~~~~~~d~~~~~~  147 (299)
T 3g2m_A           70 SEAREFATRTGPVS-GPVLELAAGMGRLTFPFLDLGW-EVTALELSTSVLAAFRKRLAEAPADVRDRCTLVQGDMSAFAL  147 (299)
T ss_dssp             HHHHHHHHHHCCCC-SCEEEETCTTTTTHHHHHTTTC-CEEEEESCHHHHHHHHHHHHTSCHHHHTTEEEEECBTTBCCC
T ss_pred             HHHHHHHHHCCCCC-CCEEEEECCCCHHHHHHHHCCC-EEEEEECCHHHHHHHHHHHHHCCCCCCCCEEEEECCHHHCCC
T ss_conf             99999998349999-9799991667789999997799-799996999999999999986476632204478603210674


Q ss_pred             HHH
Q ss_conf             552
Q gi|254780398|r  110 EKF  112 (284)
Q Consensus       110 ~~~  112 (284)
                      ++-
T Consensus       148 ~~~  150 (299)
T 3g2m_A          148 DKR  150 (299)
T ss_dssp             SCC
T ss_pred             CCC
T ss_conf             555


No 100
>3bxo_A N,N-dimethyltransferase; desosamine, sugar, carbohydrate, antibiotic, SAM, adoMet; HET: SAM UPP; 2.00A {Streptomyces venezuelae}
Probab=98.40  E-value=3e-07  Score=64.04  Aligned_cols=77  Identities=8%  Similarity=0.168  Sum_probs=60.0

Q ss_pred             CCCCHHHHHHHHHHCCCCCCCEEEEECCCCCHHHHHHHHCCCCEEEEECCCCCCHHHHHHHHHHHHCCCCCCHHHHCCCC
Q ss_conf             12398999999997198999879997589882346775023525998425543036887875322001220000000143
Q gi|254780398|r   29 FLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVD  108 (284)
Q Consensus        29 FL~d~~i~~~iv~~~~~~~~~~VlEIGpG~G~LT~~Ll~~~~~~v~aiEiD~~~~~~l~~~~~~~~~~~~ii~~Dal~~d  108 (284)
                      |=-+...+.++++...+ ++..|||||||+|..|..|+++++ +|+++|+.+.+++.++++..    +++++++|+.++.
T Consensus        23 ~~~~~~~~~~~~~~~~~-~~~~VLDiGcG~G~~~~~la~~g~-~v~giD~S~~~l~~a~~~~~----~~~~~~~d~~~~~   96 (239)
T 3bxo_A           23 YAAEASDIADLVRSRTP-EASSLLDVACGTGTHLEHFTKEFG-DTAGLELSEDMLTHARKRLP----DATLHQGDMRDFR   96 (239)
T ss_dssp             HHHHHHHHHHHHHHHCT-TCCEEEEETCTTSHHHHHHHHHHS-EEEEEESCHHHHHHHHHHCT----TCEEEECCTTTCC
T ss_pred             HHHHHHHHHHHHHHHCC-CCCEEEEEECCCCHHHHHHHHCCC-EEEEEECCHHHHHHHHHCCC----CCCCCCCCCCCCC
T ss_conf             89999999999997489-949899981758499999997399-69999696788788863365----4422322112677


Q ss_pred             HHH
Q ss_conf             155
Q gi|254780398|r  109 FEK  111 (284)
Q Consensus       109 ~~~  111 (284)
                      +++
T Consensus        97 ~~~   99 (239)
T 3bxo_A           97 LGR   99 (239)
T ss_dssp             CSS
T ss_pred             CCC
T ss_conf             331


No 101
>2as0_A Hypothetical protein PH1915; RNA methyltransferase, structural genomics, PSI, protein structure initiative; 1.80A {Pyrococcus horikoshii} SCOP: b.122.1.9 c.66.1.51
Probab=98.39  E-value=4.5e-07  Score=62.98  Aligned_cols=101  Identities=20%  Similarity=0.192  Sum_probs=74.8

Q ss_pred             CCCCHHHHHHHHHHCCCCCCCEEEEECCCCCHHHHHHHHCCCCEEEEECCCCCCHHHHHHHHHHH--HCCCCCCHHHHCC
Q ss_conf             12398999999997198999879997589882346775023525998425543036887875322--0012200000001
Q gi|254780398|r   29 FLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQH--PNRLEIIQDDALK  106 (284)
Q Consensus        29 FL~d~~i~~~iv~~~~~~~~~~VlEIGpG~G~LT~~Ll~~~~~~v~aiEiD~~~~~~l~~~~~~~--~~~~~ii~~Dal~  106 (284)
                      |-.|..-.+..+... ..+++.||++|+|+|.+|..++..+|++|+++|+++..++.++++...+  .++.+++.+|+.+
T Consensus       200 ~flDqr~~R~~~~~~-~~~g~~VLDl~~g~G~~si~aa~~ga~~V~~vD~s~~al~~a~~N~~~Ngl~~~~~~~~~D~~~  278 (396)
T 2as0_A          200 FFLDQRENRLALEKW-VQPGDRVLDVFTYTGGFAIHAAIAGADEVIGIDKSPRAIETAKENAKLNGVEDRMKFIVGSAFE  278 (396)
T ss_dssp             CCSTTHHHHHHHGGG-CCTTCEEEETTCTTTHHHHHHHHTTCSEEEEEESCHHHHHHHHHHHHHTTCGGGEEEEESCHHH
T ss_pred             CCHHHHHHHHHHHHH-CCCCCEEEEECCCCCHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHCCCCCCCEEEECCHHH
T ss_conf             666678889999975-1589769881787788899999779974688718888999999999983997455699662988


Q ss_pred             CCHHHHCC-CCCCEEEEECCCHHHHH
Q ss_conf             43155213-32220112023224678
Q gi|254780398|r  107 VDFEKFFN-ISSPIRIIANLPYNIGT  131 (284)
Q Consensus       107 ~d~~~~~~-~~~~~~vvgNLPYnIss  131 (284)
                      +- ..... ...--.|+.+.|+...+
T Consensus       279 ~l-~~~~~~~~~FD~Ii~DpP~~~~~  303 (396)
T 2as0_A          279 EM-EKLQKKGEKFDIVVLDPPAFVQH  303 (396)
T ss_dssp             HH-HHHHHTTCCEEEEEECCCCSCSS
T ss_pred             HH-HHHHHHCCCCCEEEECCHHHCCC
T ss_conf             87-88886078998799765121156


No 102
>1ws6_A Methyltransferase; structural genomics, riken structural genomics/proteomics initiative, RSGI; 2.50A {Thermus thermophilus HB8} SCOP: c.66.1.46
Probab=98.38  E-value=5.6e-07  Score=62.35  Aligned_cols=94  Identities=15%  Similarity=0.129  Sum_probs=64.0

Q ss_pred             CCCCCCEEEEECCCCCHHHHHHHHCCCCEEEEECCCCCCHHHHHHHHHHH--HCCCCCCHHHHCCCCHHHHCCCCCCEEE
Q ss_conf             98999879997589882346775023525998425543036887875322--0012200000001431552133222011
Q gi|254780398|r   44 GSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQH--PNRLEIIQDDALKVDFEKFFNISSPIRI  121 (284)
Q Consensus        44 ~~~~~~~VlEIGpG~G~LT~~Ll~~~~~~v~aiEiD~~~~~~l~~~~~~~--~~~~~ii~~Dal~~d~~~~~~~~~~~~v  121 (284)
                      ...++..||++|+|.|+++.+.+.+++ ++++||+|+..++.++++...+  .+++.+..+|.... .... ....--.|
T Consensus        38 ~~~~~~~vLDl~~G~G~~~i~a~~~ga-~vv~vD~~~~ai~~~~~N~~~~g~~~~v~~~~~d~~~~-~~~~-~~~~fDlI  114 (171)
T 1ws6_A           38 RYPRRGRFLDPFAGSGAVGLEAASEGW-EAVLVEKDPEAVRLLKENVRRTGLGARVVALPVEVFLP-EAKA-QGERFTVA  114 (171)
T ss_dssp             HCTTCCEEEEETCSSCHHHHHHHHTTC-EEEEECCCHHHHHHHHHHHHHHTCCCEEECSCHHHHHH-HHHH-TTCCEEEE
T ss_pred             CCCCCCEEEECCCCHHHHHHHHHHCCC-CCCCEECCHHHHHHHHHHHHHCCCCCEEEEEEHHHHHH-HHHH-CCCCEEEE
T ss_conf             457979899962067899999998089-53006068789999998788606655599977898755-5553-38855799


Q ss_pred             EECCCHHHHH-HHHHHHHHH
Q ss_conf             2023224678-899999852
Q gi|254780398|r  122 IANLPYNIGT-RLLFNWISA  140 (284)
Q Consensus       122 vgNLPYnIss-~Il~~ll~~  140 (284)
                      +.|.||+... +.+..++..
T Consensus       115 ~~DPPY~~~~~~~~~~l~~~  134 (171)
T 1ws6_A          115 FMAPPYAMDLAALFGELLAS  134 (171)
T ss_dssp             EECCCTTSCTTHHHHHHHHH
T ss_pred             EECCCCCCCHHHHHHHHHHC
T ss_conf             98799886769999999982


No 103
>3iv6_A Putative Zn-dependent alcohol dehydrogenase; alpha/beta fold, rossmann-fold, structural genomics, PSI-2, protein structure initiative; HET: SAM; 2.70A {Rhodobacter sphaeroides 2}
Probab=98.38  E-value=5.3e-07  Score=62.48  Aligned_cols=85  Identities=19%  Similarity=0.074  Sum_probs=62.8

Q ss_pred             HHCCCCCCCEEEEECCCCCHHHHHHHHCCCCEEEEECCCCCCHHHHHHHHHHHHCCCCCCHHHHCCCCHHHHCCCCCCEE
Q ss_conf             97198999879997589882346775023525998425543036887875322001220000000143155213322201
Q gi|254780398|r   41 ESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIR  120 (284)
Q Consensus        41 ~~~~~~~~~~VlEIGpG~G~LT~~Ll~~~~~~v~aiEiD~~~~~~l~~~~~~~~~~~~ii~~Dal~~d~~~~~~~~~~~~  120 (284)
                      -..++.++..|||||||+|.+|..|+.+++ .|+++|+.+.+++.+++........+....+|+......+    +.--.
T Consensus        39 ~l~~~~pg~~vLdvGcG~G~~~~~l~~~g~-~v~g~D~S~~ml~~a~~~~~~~~~~~~~~~~~~~~~~~~~----~~fD~  113 (261)
T 3iv6_A           39 FLENIVPGSTVAVIGASTRFLIEKALERGA-SVTVFDFSQRMCDDLAEALADRCVTIDLLDITAEIPKELA----GHFDF  113 (261)
T ss_dssp             HTTTCCTTCEEEEECTTCHHHHHHHHHTTC-EEEEEESCHHHHHHHHHHTSSSCCEEEECCTTSCCCGGGT----TCCSE
T ss_pred             HHHCCCCCCEEEEECCCCCHHHHHHHHCCC-EEEEECCCHHHHHHHHHHHHHCCCCCCEEECCHHHCCCCC----CCCCE
T ss_conf             971799999799988978889999996799-8999777899999999974640565330212253233457----88468


Q ss_pred             EEECCCHHHH
Q ss_conf             1202322467
Q gi|254780398|r  121 IIANLPYNIG  130 (284)
Q Consensus       121 vvgNLPYnIs  130 (284)
                      |+++-.++.-
T Consensus       114 Vv~~~~~~~~  123 (261)
T 3iv6_A          114 VLNDRLINRF  123 (261)
T ss_dssp             EEEESCGGGS
T ss_pred             EEECCHHHHC
T ss_conf             9981378746


No 104
>2p7i_A Hypothetical protein; putative methyltransferase, structural genomics, joint cente structural genomics, JCSG; 1.74A {Pectobacterium atrosepticum SCRI1043} SCOP: c.66.1.41 PDB: 2p7h_A
Probab=98.32  E-value=4.4e-07  Score=63.02  Aligned_cols=63  Identities=11%  Similarity=0.144  Sum_probs=50.9

Q ss_pred             CCCCCEEEEECCCCCHHHHHHHHCCCCEEEEECCCCCCHHHHHHHHHHHHCCCCCCHHHHCCCCHHH
Q ss_conf             8999879997589882346775023525998425543036887875322001220000000143155
Q gi|254780398|r   45 SLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEK  111 (284)
Q Consensus        45 ~~~~~~VlEIGpG~G~LT~~Ll~~~~~~v~aiEiD~~~~~~l~~~~~~~~~~~~ii~~Dal~~d~~~  111 (284)
                      ..++..|||||||+|.++..+++.++ ++++||+++.+++.+++.+..   ++.++++|+....+++
T Consensus        40 ~~~~~~VLDiGCG~G~~~~~l~~~~~-~v~giD~s~~~l~~a~~~~~~---~~~~~~~~~~~~~~~~  102 (250)
T 2p7i_A           40 FFRPGNLLELGSFKGDFTSRLQEHFN-DITCVEASEEAISHAQGRLKD---GITYIHSRFEDAQLPR  102 (250)
T ss_dssp             GCCSSCEEEESCTTSHHHHHHTTTCS-CEEEEESCHHHHHHHHHHSCS---CEEEEESCGGGCCCSS
T ss_pred             CCCCCCEEEEECCCCHHHHHHHHHCC-EEEEEECCHHHHHHHHHHHHC---CCCEEECCHHHCCCCC
T ss_conf             07999399992898799999995099-799996716888899986303---5420202222126655


No 105
>2fpo_A Methylase YHHF; structural genomics, putative methyltransferase, PSI, protein structure initiative, midwest center for structural genomics; HET: MSE; 2.05A {Escherichia coli K12} SCOP: c.66.1.46
Probab=98.31  E-value=1.1e-06  Score=60.64  Aligned_cols=120  Identities=13%  Similarity=0.134  Sum_probs=80.3

Q ss_pred             HHHHHHHHCC-CCCCCEEEEECCCCCHHHHHHHHCCCCEEEEECCCCCCHHHHHHHHHHH-HCCCCCCHHHHCCCCHHHH
Q ss_conf             9999999719-8999879997589882346775023525998425543036887875322-0012200000001431552
Q gi|254780398|r   35 ILKKIAESSG-SLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQH-PNRLEIIQDDALKVDFEKF  112 (284)
Q Consensus        35 i~~~iv~~~~-~~~~~~VlEIGpG~G~LT~~Ll~~~~~~v~aiEiD~~~~~~l~~~~~~~-~~~~~ii~~Dal~~d~~~~  112 (284)
                      +-+-+...+. ...+..||++.+|+|++..+.+.++|++|+.||.|+..+..+++..... .++.+++.+|++++- .. 
T Consensus        41 vrealFn~L~~~~~~~~vLDLfaGsG~lgiEalsRGa~~v~fVE~~~~a~~~l~~N~~~~~~~~~~ii~~d~~~~l-~~-  118 (202)
T 2fpo_A           41 VRETLFNWLAPVIVDAQCLDCFAGSGALGLEALSRYAAGATLIEMDRAVSQQLIKNLATLKAGNARVVNSNAMSFL-AQ-  118 (202)
T ss_dssp             HHHHHHHHHHHHHTTCEEEETTCTTCHHHHHHHHTTCSEEEEECSCHHHHHHHHHHHHHTTCCSEEEECSCHHHHH-SS-
T ss_pred             HHHHHHHHHHHHCCCCEEEECCCCCCHHHHHHHCCCCCEEEEEEECCCHHHHHHHHHHHHCCCCCEEEECCHHHHH-HH-
T ss_conf             9999999866432898699888785588999870799886899970333567887898746355359953245655-41-


Q ss_pred             CCCCCC-EEEEECCCHHHH--HHHHHHHHHHHCCCCCCCHHHHEEEHHHHHH
Q ss_conf             133222-011202322467--8899999852010000001102033447887
Q gi|254780398|r  113 FNISSP-IRIIANLPYNIG--TRLLFNWISADTWPPFWESLTLLFQKEVGER  161 (284)
Q Consensus       113 ~~~~~~-~~vvgNLPYnIs--s~Il~~ll~~~~~~~~~~~~vlmvQkEvA~R  161 (284)
                        .+.+ -.|+...||.-.  .+++..+......   -...++.++.+-...
T Consensus       119 --~~~~fDlIflDPPY~~~~~~~~l~~l~~~~lL---~~~~iIiiE~~~~~~  165 (202)
T 2fpo_A          119 --KGTPHNIVFVDPPFRRGLLEETINLLEDNGWL---ADEALIYVESEVENG  165 (202)
T ss_dssp             --CCCCEEEEEECCSSSTTTHHHHHHHHHHTTCE---EEEEEEEEEEEGGGC
T ss_pred             --CCCCCCEEEECCCCCCCHHHHHHHHHHHCCCC---CCCCEEEEEECCCCC
T ss_conf             --27766689976998754599999999988890---899499998247878


No 106
>3hem_A Cyclopropane-fatty-acyl-phospholipid synthase 2; protein-ligand complex, cytoplasm, lipid synthesis, methyltransferase; HET: D22; 2.39A {Mycobacterium tuberculosis} PDB: 1kpi_A*
Probab=98.30  E-value=1.5e-06  Score=59.75  Aligned_cols=74  Identities=18%  Similarity=0.173  Sum_probs=59.6

Q ss_pred             HHHHHHHHHCCCCCCCEEEEECCCCCHHHHHHHHCCCCEEEEECCCCCCHHHHHHHHHH--HHCCCCCCHHHHCCC
Q ss_conf             99999999719899987999758988234677502352599842554303688787532--200122000000014
Q gi|254780398|r   34 NILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQ--HPNRLEIIQDDALKV  107 (284)
Q Consensus        34 ~i~~~iv~~~~~~~~~~VlEIGpG~G~LT~~Ll~~~~~~v~aiEiD~~~~~~l~~~~~~--~~~~~~ii~~Dal~~  107 (284)
                      +.++.+++.+++.+++.|||||||.|.++..+++....+|++|.+.+.-++..++....  ..+++++...|+...
T Consensus        59 ~k~~~~~~~l~l~~g~rVLDiGCGwG~~a~~~a~~~g~~v~gitlS~~Q~~~a~~~~~~~gl~~~v~~~~~d~~~~  134 (302)
T 3hem_A           59 AKRKLALDKLNLEPGMTLLDIGCGWGSTMRHAVAEYDVNVIGLTLSENQYAHDKAMFDEVDSPRRKEVRIQGWEEF  134 (302)
T ss_dssp             HHHHHHHHTTCCCTTCEEEEETCTTSHHHHHHHHHHCCEEEEEECCHHHHHHHHHHHHHSCCSSCEEEEECCGGGC
T ss_pred             HHHHHHHHHHCCCCCCEEEEECCCCCHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHHHHCCHHHHHHHCCCCCC
T ss_conf             9999999970899989898857885399999999869838998377889999999998740021233444043234


No 107
>3l8d_A Methyltransferase; structural genomics, PSI, nysgrc, protein structure initiative, NEW YORK SGX research center for structural genomics; 1.70A {Bacillus thuringiensis}
Probab=98.30  E-value=5.3e-07  Score=62.51  Aligned_cols=72  Identities=21%  Similarity=0.277  Sum_probs=57.2

Q ss_pred             HHHHHHHHCCCCCCCEEEEECCCCCHHHHHHHHCCCCEEEEECCCCCCHHHHHHHHHHHHCCCCCCHHHHCCCCHHH
Q ss_conf             99999997198999879997589882346775023525998425543036887875322001220000000143155
Q gi|254780398|r   35 ILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEK  111 (284)
Q Consensus        35 i~~~iv~~~~~~~~~~VlEIGpG~G~LT~~Ll~~~~~~v~aiEiD~~~~~~l~~~~~~~~~~~~ii~~Dal~~d~~~  111 (284)
                      ++..+.+.+  .++..|||||||+|.+|..|++.++ +|+++|.++.+++.+++....  .+++++.+|+.++++++
T Consensus        43 ~~~~~~~~l--~~~~~VLDiGcG~G~~~~~l~~~~~-~v~giD~s~~~l~~a~~~~~~--~~~~~~~~~~~~l~~~~  114 (242)
T 3l8d_A           43 IIPFFEQYV--KKEAEVLDVGCGDGYGTYKLSRTGY-KAVGVDISEVMIQKGKERGEG--PDLSFIKGDLSSLPFEN  114 (242)
T ss_dssp             HHHHHHHHS--CTTCEEEEETCTTSHHHHHHHHTTC-EEEEEESCHHHHHHHHTTTCB--TTEEEEECBTTBCSSCT
T ss_pred             HHHHHHHHC--CCCCEEEEECCCCCHHHHHHHHCCC-EEEEEECCHHHHHHHHHCCCC--CCCCCCCCCCCCCCCCC
T ss_conf             999999858--9969799965888599999996499-899997974667998750344--42222234435678887


No 108
>3lcc_A Putative methyl chloride transferase; halide methyltransferase; HET: SAH; 1.80A {Arabidopsis thaliana}
Probab=98.30  E-value=1.8e-06  Score=59.18  Aligned_cols=76  Identities=8%  Similarity=0.137  Sum_probs=59.0

Q ss_pred             HHHHHHHHCCCCCCCEEEEECCCCCHHHHHHHHCCCCEEEEECCCCCCHHHHHHHHHHH--HCCCCCCHHHHCCCCHHHH
Q ss_conf             99999997198999879997589882346775023525998425543036887875322--0012200000001431552
Q gi|254780398|r   35 ILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQH--PNRLEIIQDDALKVDFEKF  112 (284)
Q Consensus        35 i~~~iv~~~~~~~~~~VlEIGpG~G~LT~~Ll~~~~~~v~aiEiD~~~~~~l~~~~~~~--~~~~~ii~~Dal~~d~~~~  112 (284)
                      .+..+++.... +...|||+|||.|..+..|++.++ +|+++|+++.+++.+++.....  ..+++++++|+.+.+....
T Consensus        55 ~l~~~~~~~~~-~~~rVLdlGCG~G~~~~~la~~g~-~V~giD~S~~ai~~a~~~~~~~~~~~~v~~~~~D~~~~~~~~~  132 (235)
T 3lcc_A           55 LIVHLVDTSSL-PLGRALVPGCGGGHDVVAMASPER-FVVGLDISESALAKANETYGSSPKAEYFSFVKEDVFTWRPTEL  132 (235)
T ss_dssp             HHHHHHHTTCS-CCEEEEEETCTTCHHHHHHCBTTE-EEEEECSCHHHHHHHHHHHTTSGGGGGEEEECCCTTTCCCSSC
T ss_pred             HHHHHHHHCCC-CCCCEEEECCCCCHHHHHHHHCCC-EEEEEECCHHHHHHHHHHHHHCCCCCCEEEEECCHHHHCCCCC
T ss_conf             99999985799-999489943888789999986698-7999746699999999987641544210023256767175566


No 109
>3m70_A Tellurite resistance protein TEHB homolog; structural genomics, PSI-2, protein ST initiative; 1.95A {Haemophilus influenzae}
Probab=98.29  E-value=1.5e-06  Score=59.62  Aligned_cols=72  Identities=14%  Similarity=0.284  Sum_probs=55.8

Q ss_pred             HHHHCCCCCCCEEEEECCCCCHHHHHHHHCCCCEEEEECCCCCCHHHHHHHHHHHHCCCCCCHHHHCCCCHHH
Q ss_conf             9997198999879997589882346775023525998425543036887875322001220000000143155
Q gi|254780398|r   39 IAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEK  111 (284)
Q Consensus        39 iv~~~~~~~~~~VlEIGpG~G~LT~~Ll~~~~~~v~aiEiD~~~~~~l~~~~~~~~~~~~ii~~Dal~~d~~~  111 (284)
                      +++.+...++..|||||||.|..+..|++.++ +|++||+++.+++.+++......-++..+..|+...++.+
T Consensus       112 ~~~~~~~~~~~~vLDiGcG~G~~~~~la~~g~-~v~gvD~s~~~i~~a~~~~~~~~~~~~~~~~d~~~~~~~~  183 (286)
T 3m70_A          112 VVDAAKIISPCKVLDLGCGQGRNSLYLSLLGY-DVTSWDHNENSIAFLNETKEKENLNISTALYDINAANIQE  183 (286)
T ss_dssp             HHHHHHHSCSCEEEEESCTTCHHHHHHHHTTC-EEEEEESCHHHHHHHHHHHHHTTCCEEEEECCGGGCCCCS
T ss_pred             HHHHCCCCCCCEEEEECCCCCHHHHHHHHCCC-EEEEEECCHHHHHHHHHHHHHCCCCCEEEECHHHHHCCCC
T ss_conf             99858889969799983779899999985899-7999989889999999865422662024440022110135


No 110
>1u2z_A Histone-lysine N-methyltransferase, H3 lysine-79 specific; histone methyltransferase, nucleosome; HET: SAH; 2.20A {Saccharomyces cerevisiae} SCOP: c.66.1.31
Probab=98.29  E-value=1.5e-06  Score=59.72  Aligned_cols=62  Identities=18%  Similarity=0.105  Sum_probs=54.4

Q ss_pred             CCHHHHHHHHHHCCCCCCCEEEEECCCCCHHHHHHHHC-CCCEEEEECCCCCCHHHHHHHHHH
Q ss_conf             39899999999719899987999758988234677502-352599842554303688787532
Q gi|254780398|r   31 LDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTL-GARKVIVIEKDQQFFPILKDISSQ   92 (284)
Q Consensus        31 ~d~~i~~~iv~~~~~~~~~~VlEIGpG~G~LT~~Ll~~-~~~~v~aiEiD~~~~~~l~~~~~~   92 (284)
                      +.+..+..|++.+++.+++.||++|||.|.++..++.. +++++++||+.+.+++.+++....
T Consensus       226 ~~p~~i~~Il~~l~Lkpgd~fLDLGCG~G~vvl~aA~~~g~~~viGIDis~~~l~~A~~~~~e  288 (433)
T 1u2z_A          226 LLPNFLSDVYQQCQLKKGDTFMDLGSGVGNCVVQAALECGCALSFGCEIMDDASDLTILQYEE  288 (433)
T ss_dssp             BCHHHHHHHHHHTTCCTTCEEEEESCTTSHHHHHHHHHHCCSEEEEEECCHHHHHHHHHHHHH
T ss_pred             CCHHHHHHHHHHHCCCCCCEEEECCCCCCHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHH
T ss_conf             688999999998289999989974899989999999975998799997999999999999999


No 111
>2h00_A Methyltransferase 10 domain containing protein; structural genomics, structural genomics consortium, SGC; HET: SAH; 2.00A {Homo sapiens} SCOP: c.66.1.54
Probab=98.29  E-value=1.8e-06  Score=59.28  Aligned_cols=117  Identities=13%  Similarity=0.110  Sum_probs=74.2

Q ss_pred             HHCCCCCCCCCCCCCCCCH-----HHHHHHHHHCCC-----CCCCEEEEECCCCCHHHHHHHHCCCC-EEEEECCCCCCH
Q ss_conf             9818984336584112398-----999999997198-----99987999758988234677502352-599842554303
Q gi|254780398|r   15 SHYKIIPKKYMGQNFLLDL-----NILKKIAESSGS-----LDGITVIEIGAGPGNLTQMLLTLGAR-KVIVIEKDQQFF   83 (284)
Q Consensus        15 ~~~~~~p~k~lGQnFL~d~-----~i~~~iv~~~~~-----~~~~~VlEIGpG~G~LT~~Ll~~~~~-~v~aiEiD~~~~   83 (284)
                      ..|++.  =.+--++|+=+     +.++.|.+.+..     .+...+|+||+|.|.+.-.|+.+.+. +++++|+|+..+
T Consensus        25 ~~~gl~--~~~~~~~L~P~~p~R~~y~~~i~dlL~~~~~~~~~~~~~lDiGtGsg~I~~~L~~~~~~~~~~~~Di~~~al  102 (254)
T 2h00_A           25 EDFGLS--IDIPLERLIPTVPLRLNYIHWVEDLIGHQDSDKSTLRRGIDIGTGASCIYPLLGATLNGWYFLATEVDDMCF  102 (254)
T ss_dssp             HHHCCC--CCCCTTSCCCCHHHHHHHHHHHHHHHCCCCGGGCCCCEEEEESCTTTTHHHHHHHHHHCCEEEEEESCHHHH
T ss_pred             HHCCCE--EECCCCCCCCCCCCHHHHHHHHHHHHCCCCCCCCCCCEEEEECCCHHHHHHHHHHHCCCCEEEEEECCHHHH
T ss_conf             865965--687999347998981569999999970546666777548995678789999999977997599998999999


Q ss_pred             HHHHHHHHHH--HCCCCCCHHHHCCCCHHHHCC-CCCC-EEEEECCCHHHHHHH
Q ss_conf             6887875322--001220000000143155213-3222-011202322467889
Q gi|254780398|r   84 PILKDISSQH--PNRLEIIQDDALKVDFEKFFN-ISSP-IRIIANLPYNIGTRL  133 (284)
Q Consensus        84 ~~l~~~~~~~--~~~~~ii~~Dal~~d~~~~~~-~~~~-~~vvgNLPYnIss~I  133 (284)
                      +.+++....+  .+++.+++.|--..-+..... .... -.|++|.||.-++.-
T Consensus       103 ~~A~~N~~~n~l~~~i~~~~~~~~~~i~~~~~~~~~~~fD~iv~NPPY~~~~~~  156 (254)
T 2h00_A          103 NYAKKNVEQNNLSDLIKVVKVPQKTLLMDALKEESEIIYDFCMCNPPFFANQLE  156 (254)
T ss_dssp             HHHHHHHHHTTCTTTEEEEECCTTCSSTTTSTTCCSCCBSEEEECCCCC-----
T ss_pred             HHHHHHHHHHCCCCCEEEEECCHHHHHHHHHHHHCCCCEEEEEECCCCCCCHHH
T ss_conf             999999998387652245652327767666666436765499936855577022


No 112
>3c0k_A UPF0064 protein YCCW; PUA domain, adoMet dependent methyltransferase fold; 2.00A {Escherichia coli K12}
Probab=98.29  E-value=1.6e-06  Score=59.58  Aligned_cols=105  Identities=15%  Similarity=0.180  Sum_probs=78.6

Q ss_pred             CCC--CCCCHHHHHHHHHHCCCCCCCEEEEECCCCCHHHHHHHHCCCCEEEEECCCCCCHHHHHHHHHHH--H-CCCCCC
Q ss_conf             841--12398999999997198999879997589882346775023525998425543036887875322--0-012200
Q gi|254780398|r   26 GQN--FLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQH--P-NRLEII  100 (284)
Q Consensus        26 GQn--FL~d~~i~~~iv~~~~~~~~~~VlEIGpG~G~LT~~Ll~~~~~~v~aiEiD~~~~~~l~~~~~~~--~-~~~~ii  100 (284)
                      ||+  |..|.+-.++.++..  .++..||++++|+|..+...+..+|++|++||+++..++.+++++..+  + .+.+++
T Consensus       199 g~ktG~flDqR~~R~~v~~~--~~g~rVLdlf~~tG~~si~Aa~~GA~~V~~vD~s~~al~~a~~N~~~Ngl~~~~~~~i  276 (396)
T 3c0k_A          199 GHKTGYYLDQRDSRLATRRY--VENKRVLNCFSYTGGFAVSALMGGCSQVVSVDTSQEALDIARQNVELNKLDLSKAEFV  276 (396)
T ss_dssp             SSTTSSCGGGHHHHHHHHHH--CTTCEEEEESCTTCSHHHHHHHTTCSEEEEEESCHHHHHHHHHHHHHTTCCGGGEEEE
T ss_pred             CCCCCCCHHHHHHHHHHHHH--CCCCEEEECCCCCCHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHHCCCCCCCEEE
T ss_conf             67577553068999999976--5998687538866889999997799759999898999999999999829984345789


Q ss_pred             HHHHCCCCHHHHCCCCCCEEEEECCCHHHHHH
Q ss_conf             00000143155213322201120232246788
Q gi|254780398|r  101 QDDALKVDFEKFFNISSPIRIIANLPYNIGTR  132 (284)
Q Consensus       101 ~~Dal~~d~~~~~~~~~~~~vvgNLPYnIss~  132 (284)
                      ++|+.++--.........-.||-+.|+.+.+.
T Consensus       277 ~~d~~~~l~~~~~~~~~fD~IilDPP~f~~~~  308 (396)
T 3c0k_A          277 RDDVFKLLRTYRDRGEKFDVIVMDPPKFVENK  308 (396)
T ss_dssp             ESCHHHHHHHHHHTTCCEEEEEECCSSTTTCS
T ss_pred             ECCHHHHHHHHHHHHCCCCEEEECCCCCCCCH
T ss_conf             42299999999875359998998783224561


No 113
>2kw5_A SLR1183 protein; structural genomics, northeast structural genomics consortium (NESG), PSI-2, protein structure initiative, unknown function; NMR {Synechocystis} PDB: 3mer_A
Probab=98.28  E-value=6.3e-07  Score=62.06  Aligned_cols=65  Identities=14%  Similarity=0.265  Sum_probs=54.1

Q ss_pred             CCCCEEEEECCCCCHHHHHHHHCCCCEEEEECCCCCCHHHHHHHHHHHHCCCCCCHHHHCCCCHHH
Q ss_conf             999879997589882346775023525998425543036887875322001220000000143155
Q gi|254780398|r   46 LDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEK  111 (284)
Q Consensus        46 ~~~~~VlEIGpG~G~LT~~Ll~~~~~~v~aiEiD~~~~~~l~~~~~~~~~~~~ii~~Dal~~d~~~  111 (284)
                      .++..|||+|||+|..|..|++++. +|+++|+++.+++.+++......-+++++.+|+.+++++.
T Consensus        28 ~~~~~vLDlGcG~G~~~~~la~~G~-~V~~vD~s~~~l~~a~~~~~~~~~~~~~~~~d~~~~~~~~   92 (202)
T 2kw5_A           28 IPQGKILCLAEGEGRNACFLASLGY-EVTAVDQSSVGLAKAKQLAQEKGVKITTVQSNLADFDIVA   92 (202)
T ss_dssp             SCSSEEEECCCSCTHHHHHHHTTTC-EEEEECSSHHHHHHHHHHHHHHTCCEEEECCBTTTBSCCT
T ss_pred             CCCCCEEEECCCCCHHHHHHHHCCC-CEEEEECCHHHHHHHHHHHHHHCCCEEEEECCHHHCCCCC
T ss_conf             8989399983778999999998699-1467777899999999988871995589982263389988


No 114
>3khk_A Type I restriction-modification system methylation subunit; structural genomics, PSI-2, protein structure initiative; 2.55A {Methanosarcina mazei}
Probab=98.27  E-value=1.6e-05  Score=53.29  Aligned_cols=186  Identities=13%  Similarity=0.117  Sum_probs=110.0

Q ss_pred             HHHHCCCCCCCCCCCCCCCCHHHHHHHHHHCCCCCCCEEEEECCCCCHHHHHHHHC----------------CCCEEEEE
Q ss_conf             99981898433658411239899999999719899987999758988234677502----------------35259984
Q gi|254780398|r   13 ILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTL----------------GARKVIVI   76 (284)
Q Consensus        13 ll~~~~~~p~k~lGQnFL~d~~i~~~iv~~~~~~~~~~VlEIGpG~G~LT~~Ll~~----------------~~~~v~ai   76 (284)
                      +++++.-..+|+.||.| +-+.+++-||+.+++.++ .|++--||+|.+-.+..+.                ....+.++
T Consensus       212 ll~~~~~~~~k~~G~ff-TP~~Iv~lmv~ll~p~~~-~I~DPacGsGgfLi~a~~~i~~~~~~~~~~~~~~~~~~~l~G~  289 (544)
T 3khk_A          212 FLGQFALAEGKQGGQYY-TPKSIVTLIVEMLEPYKG-RVYDPAMGSGGFFVSSDKFIEKHANVKHYNASEQKKQISVYGQ  289 (544)
T ss_dssp             HHHHHHHTTTCCSTTTC-CCHHHHHHHHHHHCCCSE-EEEESSCTTCHHHHHHHHHHHHHHHHHTSCHHHHGGGEEEEEC
T ss_pred             HHHHHHHHCCCCCCEEC-CCHHHHHHHHHCCCCCCC-CEECCCCCCCHHHHHHHHHHHHHCCCCCCCCHHHHHHCEEECC
T ss_conf             99999886076476554-818999999862389988-3703777761789999999998245222220222201106150


Q ss_pred             CCCCCCHHHHHHHHH--HHHCCCCCCHHHHCCCCHHHHCCCCCCEEEEECCCHHHHH-----------------------
Q ss_conf             255430368878753--2200122000000014315521332220112023224678-----------------------
Q gi|254780398|r   77 EKDQQFFPILKDISS--QHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGT-----------------------  131 (284)
Q Consensus        77 EiD~~~~~~l~~~~~--~~~~~~~ii~~Dal~~d~~~~~~~~~~~~vvgNLPYnIss-----------------------  131 (284)
                      |+|+..+..++-.+-  ..+....+.++|.+.-+...   ....-.|++|.||+...                       
T Consensus       290 Ei~~~~~~la~~nm~l~g~~~~~~~~~~d~l~~~~~~---~~~fD~Il~NPPfg~~~~~~~~~~~~~~~~~~~~~~~~~~  366 (544)
T 3khk_A          290 ESNPTTWKLAAMNMVIRGIDFNFGKKNADSFLDDQHP---DLRADFVMTNPPFNMKDWWHEKLADDPRWTINTNGEKRIL  366 (544)
T ss_dssp             CCCHHHHHHHHHHHHHTTCCCBCCSSSCCTTTSCSCT---TCCEEEEEECCCSSCCSCCCGGGTTCGGGEECCC--CEEC
T ss_pred             CCCHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCC---CCCCCEEEECCCCCCCCCCCCCCCCCHHHHHCCCCCCCCC
T ss_conf             3877999999988986188866453567543465565---5446757506987766555300013545540345643457


Q ss_pred             ---------HHHHHHHHHHCCCCCCCHHHHEEEHHHHHHHHHCCCHHHHHHHHHHHCCCCCEEEECCCCCCEECCCCCCC
Q ss_conf             ---------89999985201000000110203344788753012312332345432013320120001100001057875
Q gi|254780398|r  132 ---------RLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFPSPKVT  202 (284)
Q Consensus       132 ---------~Il~~ll~~~~~~~~~~~~vlmvQkEvA~Rl~a~pg~k~Yg~LSv~~q~~~~v~~~~~V~~~~F~P~PkVd  202 (284)
                               .++.+.+... .+ ..+.++++-.-=    +... + ..+..+=-..--.+.++-+...|.+.|++. .|.
T Consensus       367 ~~~~~~~~~~Fi~~~l~~L-k~-~G~~aiIvp~~~----l~~~-~-~~e~~iR~~Ll~~~~i~aII~LP~~~F~~t-~i~  437 (544)
T 3khk_A          367 TPPTGNANFAWMLHMLYHL-AP-TGSMALLLANGS----MSSN-T-NNEGEIRKTLVEQDLVECMVALPGQLFTNT-QIP  437 (544)
T ss_dssp             CCCTTCTHHHHHHHHHHTE-EE-EEEEEEEEETHH----HHCC-G-GGHHHHHHHHHHTTCEEEEEECCTTBCCSC-SSC
T ss_pred             CCCCCCHHHHHHHHHHHHC-CC-CCEEEEEECCCC----CCCC-C-CHHHHHHHHHHHCCCEEEEEECCHHCCCCC-CCC
T ss_conf             8998747899999999717-77-780699976885----4367-8-717899999996695899972882006899-997


Q ss_pred             EEEEEECCCC
Q ss_conf             7887301258
Q gi|254780398|r  203 STVIHFIPHL  212 (284)
Q Consensus       203 S~vi~l~pk~  212 (284)
                      ++|+-|...+
T Consensus       438 t~Ilvl~K~k  447 (544)
T 3khk_A          438 ACIWFLTKDK  447 (544)
T ss_dssp             EEEEEEESCC
T ss_pred             EEEEEEECCC
T ss_conf             5999998898


No 115
>1g8a_A Fibrillarin-like PRE-rRNA processing protein; rRNA binding, RNA binding, structural genomics, BSGC structure funded by NIH; 1.40A {Pyrococcus horikoshii} SCOP: c.66.1.3 PDB: 2nnw_B 1pry_A
Probab=98.27  E-value=3.3e-06  Score=57.57  Aligned_cols=68  Identities=22%  Similarity=0.247  Sum_probs=55.3

Q ss_pred             HHHCCCCCCCEEEEECCCCCHHHHHHHHC-CC-CEEEEECCCCCCHHHHHHHHHHHHCCCCCCHHHHCCCC
Q ss_conf             99719899987999758988234677502-35-25998425543036887875322001220000000143
Q gi|254780398|r   40 AESSGSLDGITVIEIGAGPGNLTQMLLTL-GA-RKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVD  108 (284)
Q Consensus        40 v~~~~~~~~~~VlEIGpG~G~LT~~Ll~~-~~-~~v~aiEiD~~~~~~l~~~~~~~~~~~~ii~~Dal~~d  108 (284)
                      ++.+++.+|+.||++|+|+|..|..+++. ++ ..|+|||+++.++..+++.....+| +..+.+|+-...
T Consensus        66 l~~l~i~pG~~VLDlG~G~G~~~~~la~~vg~~G~V~avD~s~~~l~~l~~~~~~~~n-i~~v~~da~~~~  135 (227)
T 1g8a_A           66 LKNFPIKPGKSVLYLGIASGTTASHVSDIVGWEGKIFGIEFSPRVLRELVPIVEERRN-IVPILGDATKPE  135 (227)
T ss_dssp             CCCCCCCTTCEEEEETTTSTTHHHHHHHHHCTTSEEEEEESCHHHHHHHHHHHSSCTT-EEEEECCTTCGG
T ss_pred             HHHCCCCCCCEEEEEECCCCHHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHCCC-CEEEEEECCCHH
T ss_conf             5316989999999971787889999999848996699998999999999987876698-349998767944


No 116
>1im8_A YECO; methyltransferase, adenosylhomocysteine, structural genomics, hypothetical protein, structure 2 function project, S2F; HET: SAI; 2.20A {Haemophilus influenzae rd KW20} SCOP: c.66.1.14
Probab=98.26  E-value=2e-06  Score=58.97  Aligned_cols=67  Identities=18%  Similarity=0.174  Sum_probs=53.9

Q ss_pred             CCCCCEEEEECCCCCHHHHHHHHCC--C-CEEEEECCCCCCHHHHHHHHHHHH--CCCCCCHHHHCCCCHHH
Q ss_conf             8999879997589882346775023--5-259984255430368878753220--01220000000143155
Q gi|254780398|r   45 SLDGITVIEIGAGPGNLTQMLLTLG--A-RKVIVIEKDQQFFPILKDISSQHP--NRLEIIQDDALKVDFEK  111 (284)
Q Consensus        45 ~~~~~~VlEIGpG~G~LT~~Ll~~~--~-~~v~aiEiD~~~~~~l~~~~~~~~--~~~~ii~~Dal~~d~~~  111 (284)
                      ..++..|||||||+|..|..+++..  + -++++|++.+.+++.++++....+  .+++.+++|+..++..+
T Consensus        56 ~~~~~~vLDlGcGtG~~~~~l~~~~~~~~~~v~giD~S~~ml~~A~~k~~~~~~~~~~~~~~~d~~~~~~~~  127 (244)
T 1im8_A           56 VTADSNVYDLGCSRGAATLSARRNINQPNVKIIGIDNSQPMVERCRQHIAAYHSEIPVEILCNDIRHVEIKN  127 (244)
T ss_dssp             CCTTCEEEEESCTTCHHHHHHHHTCCCSSCEEEEECSCHHHHHHHHHHHHTSCCSSCEEEECSCTTTCCCCS
T ss_pred             CCCCCEEEEEEECCCHHHHHHHHHCCCCCCEEEEECCCHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCC
T ss_conf             799798999200222889998863369980899976978999999864431065432110123210001243


No 117
>1kpg_A CFA synthase;, cyclopropane-fatty-acyl-phospholipid synthase 1; mixed alpha beta fold, structural genomics, PSI; HET: SAH 16A; 2.00A {Mycobacterium tuberculosis} SCOP: c.66.1.18 PDB: 1kp9_A* 1kph_A* 1tpy_A* 1l1e_A*
Probab=98.25  E-value=1.8e-06  Score=59.21  Aligned_cols=75  Identities=9%  Similarity=0.123  Sum_probs=60.0

Q ss_pred             HHHHHHHHHHCCCCCCCEEEEECCCCCHHHHHHHHCCCCEEEEECCCCCCHHHHHHHHHH--HHCCCCCCHHHHCCC
Q ss_conf             899999999719899987999758988234677502352599842554303688787532--200122000000014
Q gi|254780398|r   33 LNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQ--HPNRLEIIQDDALKV  107 (284)
Q Consensus        33 ~~i~~~iv~~~~~~~~~~VlEIGpG~G~LT~~Ll~~~~~~v~aiEiD~~~~~~l~~~~~~--~~~~~~ii~~Dal~~  107 (284)
                      .+.++.+++.+++.+|+.|||||||.|.+...+++....+|+++.+.+.-++..++....  ..+++++..+|+...
T Consensus        50 ~~k~~~l~~~l~l~~G~~VLDiGCG~G~~a~~~A~~~g~~v~git~s~~q~~~a~~~~~~~~~~~~~~~~~~d~~~~  126 (287)
T 1kpg_A           50 IAKIDLALGKLGLQPGMTLLDVGCGWGATMMRAVEKYDVNVVGLTLSKNQANHVQQLVANSENLRSKRVLLAGWEQF  126 (287)
T ss_dssp             HHHHHHHHTTTTCCTTCEEEEETCTTSHHHHHHHHHHCCEEEEEESCHHHHHHHHHHHHTCCCCSCEEEEESCGGGC
T ss_pred             HHHHHHHHHHCCCCCCCEEEEECCCHHHHHHHHHHHCCCCEEEEECCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHC
T ss_conf             99999999971999999899968852599999999679846999689999999999987614540157887436641


No 118
>2gpy_A O-methyltransferase; structural genomics, PSI, protein structure initiative, NEW YORK SGX research center for structural genomics; HET: MSE; 1.90A {Bacillus halodurans c-125}
Probab=98.24  E-value=1.4e-06  Score=59.86  Aligned_cols=97  Identities=16%  Similarity=0.231  Sum_probs=69.1

Q ss_pred             CCCHHHHHHHHHHCCCCCCCEEEEECCCCCHHHHHHHHCCCC-EEEEECCCCCCHHHHHHHHHH--HHCCCCCCHHHHCC
Q ss_conf             239899999999719899987999758988234677502352-599842554303688787532--20012200000001
Q gi|254780398|r   30 LLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGAR-KVIVIEKDQQFFPILKDISSQ--HPNRLEIIQDDALK  106 (284)
Q Consensus        30 L~d~~i~~~iv~~~~~~~~~~VlEIGpG~G~LT~~Ll~~~~~-~v~aiEiD~~~~~~l~~~~~~--~~~~~~ii~~Dal~  106 (284)
                      .+++....-+...+...+...|||||+|.|.-|..++...+. +|+++|+++..++.+++.+..  ..++++++.||+.+
T Consensus        37 ii~~~~~~~l~~l~~~~~~~~VLEIGtg~G~Stl~la~~~p~~~v~tiD~~~~~~~~A~~~~~~~gl~~~I~~~~gda~d  116 (233)
T 2gpy_A           37 IMDLLGMESLLHLLKMAAPARILEIGTAIGYSAIRMAQALPEATIVSIERDERRYEEAHKHVKALGLESRIELLFGDALQ  116 (233)
T ss_dssp             CCCHHHHHHHHHHHHHHCCSEEEEECCTTSHHHHHHHHHCTTCEEEEECCCHHHHHHHHHHHHHTTCTTTEEEECSCGGG
T ss_pred             CCCHHHHHHHHHHHHHHCCCEEEEEECCCCHHHHHHHHHCCCCEEEEEEECHHHHHHHHHHHHHHHHCCCCEEEECCHHH
T ss_conf             77889999999998865899899961121299999998789977999970489999999999997421211265332877


Q ss_pred             CCHHHHCCCCCCEEEE---ECCCHH
Q ss_conf             4315521332220112---023224
Q gi|254780398|r  107 VDFEKFFNISSPIRII---ANLPYN  128 (284)
Q Consensus       107 ~d~~~~~~~~~~~~vv---gNLPYn  128 (284)
                      +.. .+ +...++-+|   +..+.+
T Consensus       117 ~l~-~l-~~~~~fD~ifiD~~k~~~  139 (233)
T 2gpy_A          117 LGE-KL-ELYPLFDVLFIDAAKGQY  139 (233)
T ss_dssp             SHH-HH-TTSCCEEEEEEEGGGSCH
T ss_pred             HHH-HH-CCCCCCCEEEECCCHHHH
T ss_conf             777-51-135776289972766768


No 119
>3jwg_A HEN1, methyltransferase type 12; 1.90A {Clostridium thermocellum} PDB: 3jwi_A
Probab=98.23  E-value=4.5e-06  Score=56.74  Aligned_cols=98  Identities=16%  Similarity=0.202  Sum_probs=64.1

Q ss_pred             HHHHHHHHHHCCCCCCCEEEEECCCCCHHHHHHHHCCC-CEEEEECCCCCCHHHHHHHHHHHH------CCCCCCHHHHC
Q ss_conf             89999999971989998799975898823467750235-259984255430368878753220------01220000000
Q gi|254780398|r   33 LNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGA-RKVIVIEKDQQFFPILKDISSQHP------NRLEIIQDDAL  105 (284)
Q Consensus        33 ~~i~~~iv~~~~~~~~~~VlEIGpG~G~LT~~Ll~~~~-~~v~aiEiD~~~~~~l~~~~~~~~------~~~~ii~~Dal  105 (284)
                      +.-++++.+.+...+++.|||||||.|.+|..|++.++ .+|+++++++.+++.+++......      .......+|+.
T Consensus        15 ~~r~~~v~~~l~~~~~~rVLDvGCG~G~~~~~La~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~   94 (219)
T 3jwg_A           15 QQRLGTVVAVLKSVNAKKVIDLGCGEGNLLSLLLKDKSFEQITGVDVSYSVLERAKDRLKIDRLPEMQRKRISLFQSSLV   94 (219)
T ss_dssp             HHHHHHHHHHHHHTTCCEEEEETCTTCHHHHHHHTSTTCCEEEEEESCHHHHHHHHHHHTGGGSCHHHHTTEEEEECCSS
T ss_pred             HHHHHHHHHHCCCCCCCEEEEEECCCCHHHHHHHHHCCCCEEEECCCCHHHHHHHHHHHHHCCCCHHHCCCCCCCCCCHH
T ss_conf             99999999964112849899981878999999998389745632259999999999986550441232001000114533


Q ss_pred             CCCHHHHCCCCCCEEEEECCCHHHHHHH
Q ss_conf             1431552133222011202322467889
Q gi|254780398|r  106 KVDFEKFFNISSPIRIIANLPYNIGTRL  133 (284)
Q Consensus       106 ~~d~~~~~~~~~~~~vvgNLPYnIss~I  133 (284)
                      ..+...-   .-...+..+.=++++.+-
T Consensus        95 ~~~~~~~---~fD~i~~~~vl~hl~~~~  119 (219)
T 3jwg_A           95 YRDKRFS---GYDAATVIEVIEHLDENR  119 (219)
T ss_dssp             SCCGGGT---TCSEEEEESCGGGCCHHH
T ss_pred             HCCHHCC---CCCEEHHHHHHHHCCHHH
T ss_conf             2500036---554562755697189589


No 120
>3ou2_A SAM-dependent methyltransferase; O-methyltransferase, SAH; HET: SAH; 1.50A {Streptomyces luridus} PDB: 3ou6_A* 3ou7_A*
Probab=98.23  E-value=3.2e-06  Score=57.68  Aligned_cols=66  Identities=17%  Similarity=0.180  Sum_probs=52.9

Q ss_pred             HHCCCCCCCEEEEECCCCCHHHHHHHHCCCCEEEEECCCCCCHHHHHHHHHHHHCCCCCCHHHHCCCCHH
Q ss_conf             9719899987999758988234677502352599842554303688787532200122000000014315
Q gi|254780398|r   41 ESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFE  110 (284)
Q Consensus        41 ~~~~~~~~~~VlEIGpG~G~LT~~Ll~~~~~~v~aiEiD~~~~~~l~~~~~~~~~~~~ii~~Dal~~d~~  110 (284)
                      .......+..|||||||+|.+|..|++.+ .+|+++|+.+.+++.+++..  .+ +++++.+|+.++.++
T Consensus        40 ~l~~~~~~~~vLDvGcG~G~~~~~la~~g-~~v~gvD~S~~~l~~a~~~~--~~-~v~~~~~d~~~~~~~  105 (218)
T 3ou2_A           40 RLRAGNIRGDVLELASGTGYWTRHLSGLA-DRVTALDGSAEMIAEAGRHG--LD-NVEFRQQDLFDWTPD  105 (218)
T ss_dssp             HHTTTTSCSEEEEESCTTSHHHHHHHHHS-SEEEEEESCHHHHHHHGGGC--CT-TEEEEECCTTSCCCS
T ss_pred             HHHCCCCCCCEEEECCCCCHHHHHHHHCC-CEEEEEECCCHHHHHHHHHH--CC-CEEECCCHHHCCCCC
T ss_conf             97366889979998898878999999619-98999978317899999730--55-111001101012568


No 121
>2avn_A Ubiquinone/menaquinone biosynthesis methyltransfe related protein; ubiquinone/menaquinone biosynthesis methyltransferase-relate protein; HET: SAI; 2.35A {Thermotoga maritima MSB8} SCOP: c.66.1.41
Probab=98.23  E-value=2.6e-06  Score=58.25  Aligned_cols=60  Identities=15%  Similarity=0.412  Sum_probs=49.3

Q ss_pred             CCCCCEEEEECCCCCHHHHHHHHCCCCEEEEECCCCCCHHHHHHHHHHHHCCCCCCHHHHCCCCHH
Q ss_conf             899987999758988234677502352599842554303688787532200122000000014315
Q gi|254780398|r   45 SLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFE  110 (284)
Q Consensus        45 ~~~~~~VlEIGpG~G~LT~~Ll~~~~~~v~aiEiD~~~~~~l~~~~~~~~~~~~ii~~Dal~~d~~  110 (284)
                      +.+++.|||||||+|.+|..++++++ +|+++|+.+.+++.+++...     .+++++|+.+++++
T Consensus        52 ~~~~~~VLDiGCGtG~~~~~la~~g~-~v~giD~S~~ml~~Ak~~~~-----~~~~~~~~~~l~~~  111 (260)
T 2avn_A           52 LKNPCRVLDLGGGTGKWSLFLQERGF-EVVLVDPSKEMLEVAREKGV-----KNVVEAKAEDLPFP  111 (260)
T ss_dssp             CCSCCEEEEETCTTCHHHHHHHTTTC-EEEEEESCHHHHHHHHHHTC-----SCEEECCTTSCCSC
T ss_pred             CCCCCEEEEECCCCCHHHHHHHHCCC-EEEEEECHHHHHHHHHHHCC-----CCCCCCHHHHCCCC
T ss_conf             79969899989999888999986199-89999352378899988363-----22000157508886


No 122
>1pjz_A Thiopurine S-methyltransferase; polymorphism, S-adenosylmethionine, drug metabolism; NMR {Pseudomonas syringae PV} SCOP: c.66.1.36
Probab=98.22  E-value=1.7e-06  Score=59.34  Aligned_cols=77  Identities=16%  Similarity=0.115  Sum_probs=60.2

Q ss_pred             CCHHHHHHHHHHCCCCCCCEEEEECCCCCHHHHHHHHCCCCEEEEECCCCCCHHHHHHHHHHHH-------------CCC
Q ss_conf             3989999999971989998799975898823467750235259984255430368878753220-------------012
Q gi|254780398|r   31 LDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQHP-------------NRL   97 (284)
Q Consensus        31 ~d~~i~~~iv~~~~~~~~~~VlEIGpG~G~LT~~Ll~~~~~~v~aiEiD~~~~~~l~~~~~~~~-------------~~~   97 (284)
                      +++.+. +....+++.++..|||+|||+|..+..|+++++ +|+++++.+.+++.++++.....             .++
T Consensus         7 ~~~~~~-~~~~~l~~~~g~rVLD~GCG~G~~~~~La~~g~-~v~gvD~S~~~i~~a~~~~~~~~~~~~~~~~~~~~~~~~   84 (203)
T 1pjz_A            7 VNKDLQ-QYWSSLNVVPGARVLVPLCGKSQDMSWLSGQGY-HVVGAELSEAAVERYFTERGEQPHITSQGDFKVYAAPGI   84 (203)
T ss_dssp             STHHHH-HHHHHHCCCTTCEEEETTTCCSHHHHHHHHHCC-EEEEEEECHHHHHHHHHHHCSCSEEEEETTEEEEECSSS
T ss_pred             HCHHHH-HHHHHCCCCCCCEEEEECCCCCHHHHHHHHCCC-EEEEECCCHHHHHHHHHHHCCCCCCCCCCHHHCCCCCEE
T ss_conf             488999-999964999999799973789888999996798-778852659999999997234553200011110023236


Q ss_pred             CCCHHHHCCCCH
Q ss_conf             200000001431
Q gi|254780398|r   98 EIIQDDALKVDF  109 (284)
Q Consensus        98 ~ii~~Dal~~d~  109 (284)
                      ++.++|+...+.
T Consensus        85 ~~~~~~~~~l~~   96 (203)
T 1pjz_A           85 EIWCGDFFALTA   96 (203)
T ss_dssp             EEEEECCSSSTH
T ss_pred             EEEEEEHHCCCC
T ss_conf             899830111663


No 123
>3ckk_A TRNA (guanine-N(7)-)-methyltransferase; mettl1, S-adenosyl-L-methionine, tRNA processing, structural genomics, structural genomics consortium, SGC; HET: SAM; 1.55A {Homo sapiens}
Probab=98.22  E-value=2.4e-06  Score=58.47  Aligned_cols=80  Identities=18%  Similarity=0.244  Sum_probs=56.4

Q ss_pred             CCCEEEEECCCCCHHHHHHHHCCCC-EEEEECCCCCCHHHHHHHHHH-------HHCCCCCCHHHHCCCCHHHHCCCCCC
Q ss_conf             9987999758988234677502352-599842554303688787532-------20012200000001431552133222
Q gi|254780398|r   47 DGITVIEIGAGPGNLTQMLLTLGAR-KVIVIEKDQQFFPILKDISSQ-------HPNRLEIIQDDALKVDFEKFFNISSP  118 (284)
Q Consensus        47 ~~~~VlEIGpG~G~LT~~Ll~~~~~-~v~aiEiD~~~~~~l~~~~~~-------~~~~~~ii~~Dal~~d~~~~~~~~~~  118 (284)
                      ..-.|||||||.|..|..++++.+. .+++||+....+..+......       .-.|+.++++||.++ +++++..++-
T Consensus        46 ~~~~iLeIGcG~G~~l~~lA~~~P~~~~iGiei~~~~~~~~~~~~~~~~~~~~~~l~Nv~~~~~da~~~-l~~~~~~~s~  124 (235)
T 3ckk_A           46 AQVEFADIGCGYGGLLVELSPLFPDTLILGLEIRVKVSDYVQDRIRALRAAPAGGFQNIACLRSNAMKH-LPNFFYKGQL  124 (235)
T ss_dssp             CCEEEEEETCTTCHHHHHHGGGSTTSEEEEEESCHHHHHHHHHHHHHHHHSTTCCCTTEEEEECCTTTC-HHHHCCTTCE
T ss_pred             CCCEEEEEECCCCHHHHHHHHHCCCCCEEEEEECHHHHHHHHHHHHHHHHHHHCCCCEEEEEECCHHHH-HHHHHCCCCC
T ss_conf             898799982268699999998686872898861358999999899999999870885699985444877-6665135540


Q ss_pred             EEEEECCCH
Q ss_conf             011202322
Q gi|254780398|r  119 IRIIANLPY  127 (284)
Q Consensus       119 ~~vvgNLPY  127 (284)
                      -.|.-|.|-
T Consensus       125 d~v~i~fPD  133 (235)
T 3ckk_A          125 TKMFFLFPD  133 (235)
T ss_dssp             EEEEEESCC
T ss_pred             HHCEEECCC
T ss_conf             010576689


No 124
>2i6g_A Putative methyltransferase; 16420133, structural genomics, joint center for structural genomics, JCSG, protein structure initiative; HET: MLY; 1.90A {Salmonella typhimurium LT2} SCOP: c.66.1.44
Probab=98.21  E-value=4.8e-06  Score=56.55  Aligned_cols=71  Identities=15%  Similarity=0.237  Sum_probs=52.1

Q ss_pred             HHHHCCCCCCCEEEEECCCCCHHHHHHHHCCCCEEEEECCCCCCHHHHHHHHHHHH-CCCCCCHHHHCCCCHH
Q ss_conf             99971989998799975898823467750235259984255430368878753220-0122000000014315
Q gi|254780398|r   39 IAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQHP-NRLEIIQDDALKVDFE  110 (284)
Q Consensus        39 iv~~~~~~~~~~VlEIGpG~G~LT~~Ll~~~~~~v~aiEiD~~~~~~l~~~~~~~~-~~~~ii~~Dal~~d~~  110 (284)
                      +++.+.......|||||||+|..|..|+++++ +|+++|+++.+++.+++...... ..++....|+....++
T Consensus        23 ~~~~~~~l~pgrVLDiGcG~G~~~~~la~~g~-~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~d~~~~~~~   94 (199)
T 2i6g_A           23 VLAAAXVVAPGRTLDLGCGNGRNSLYLAANGY-DVTAWDXNPASMANLERIXAAEGLDNLQTDLVDLNTLTFD   94 (199)
T ss_dssp             HHHHHTTSCSCEEEEETCTTSHHHHHHHHTTC-EEEEEESCHHHHHHHHHHHHHTTCTTEEEEECCTTTCCCC
T ss_pred             HHHHHCCCCCCCEEEECCCCCHHHHHHHHCCC-EEEEEECCCHHHHHHHHHHHHCCCCCHHHHHEECCCCCCC
T ss_conf             99984378989689985889789999985499-8999958718999999864213764100100000024668


No 125
>3e8s_A Putative SAM dependent methyltransferase; NP_744700.1, structural genomics, joint center for structural genomics, JCSG; HET: SAH; 2.10A {Pseudomonas putida KT2440}
Probab=98.21  E-value=8e-07  Score=61.39  Aligned_cols=69  Identities=16%  Similarity=0.183  Sum_probs=51.1

Q ss_pred             HHHHHHCCCCCCCEEEEECCCCCHHHHHHHHCCCCEEEEECCCCCCHHHHHHHHHHHHCCCCCCHHHHCC
Q ss_conf             9999971989998799975898823467750235259984255430368878753220012200000001
Q gi|254780398|r   37 KKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALK  106 (284)
Q Consensus        37 ~~iv~~~~~~~~~~VlEIGpG~G~LT~~Ll~~~~~~v~aiEiD~~~~~~l~~~~~~~~~~~~ii~~Dal~  106 (284)
                      ..+...+....++.|||||||+|.++..|+++++ +|+++|+++.+++.+++........+.....+...
T Consensus        42 ~~~l~~l~~~~~~~vLDiGcG~G~~~~~l~~~g~-~v~gvD~S~~~i~~A~~~~~~~~~~~~~~~~~~~~  110 (227)
T 3e8s_A           42 QAILLAILGRQPERVLDLGCGEGWLLRALADRGI-EAVGVDGDRTLVDAARAAGAGEVHLASYAQLAEAK  110 (227)
T ss_dssp             HHHHHHHHHTCCSEEEEETCTTCHHHHHHHTTTC-EEEEEESCHHHHHHHHHTCSSCEEECCHHHHHTTC
T ss_pred             HHHHHHHCCCCCCEEEEECCCCCHHHHHHHHCCC-EEEEECCCHHHHHHHHHHCCCCCCEEEEEECCCCC
T ss_conf             9999971558959899976898399999997699-69998681788999998601465124433011112


No 126
>3ocj_A Putative exported protein; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; HET: PLM; 1.39A {Bordetella parapertussis}
Probab=98.21  E-value=1.2e-06  Score=60.33  Aligned_cols=79  Identities=14%  Similarity=0.026  Sum_probs=60.3

Q ss_pred             CCCCCEEEEECCCCCHHHHHHHHC-CCC-EEEEECCCCCCHHHHHHHHHH--HHCCCCCCHHHHCCCCHHHHCCCCCCEE
Q ss_conf             899987999758988234677502-352-599842554303688787532--2001220000000143155213322201
Q gi|254780398|r   45 SLDGITVIEIGAGPGNLTQMLLTL-GAR-KVIVIEKDQQFFPILKDISSQ--HPNRLEIIQDDALKVDFEKFFNISSPIR  120 (284)
Q Consensus        45 ~~~~~~VlEIGpG~G~LT~~Ll~~-~~~-~v~aiEiD~~~~~~l~~~~~~--~~~~~~ii~~Dal~~d~~~~~~~~~~~~  120 (284)
                      +.++..||+||||+|..+..|+.. ++. +|++|++++.+++.++++...  ..++++++++|+...+.+.-     ...
T Consensus       116 l~~g~~vLDvGcG~G~~~~~l~~~~~p~~~v~gvD~S~~~l~~A~~~~~~~~l~~~~~~~~~d~~~l~~~~~-----~d~  190 (305)
T 3ocj_A          116 LRPGCVVASVPCGWMSELLALDYSACPGVQLVGIDYDPEALDGATRLAAGHALAGQITLHRQDAWKLDTREG-----YDL  190 (305)
T ss_dssp             CCTTCEEEETTCTTCHHHHTSCCTTCTTCEEEEEESCHHHHHHHHHHHTTSTTGGGEEEEECCGGGCCCCSC-----EEE
T ss_pred             CCCCCEEEEECCCCHHHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHCCCCC-----CCE
T ss_conf             999599999447476999999997189958999979888999997530220123222332000887424664-----017


Q ss_pred             EEECCCHH
Q ss_conf             12023224
Q gi|254780398|r  121 IIANLPYN  128 (284)
Q Consensus       121 vvgNLPYn  128 (284)
                      ||+|-++.
T Consensus       191 iv~~~~~~  198 (305)
T 3ocj_A          191 LTSNGLNI  198 (305)
T ss_dssp             EECCSSGG
T ss_pred             EEEECCCC
T ss_conf             99813421


No 127
>3id6_C Fibrillarin-like rRNA/TRNA 2'-O- methyltransferase; C/D guide RNA, 2'-O-methylation, coiled-coil, RNA-binding, rRNA processing; HET: SAM; 2.60A {Sulfolobus solfataricus} PDB: 3id5_B*
Probab=98.19  E-value=3.3e-06  Score=57.54  Aligned_cols=93  Identities=15%  Similarity=0.111  Sum_probs=61.2

Q ss_pred             HHCCCCCCCEEEEECCCCCHHHHHHHHC-CC-CEEEEECCCCCCHHHHHHHHHHHHCCCCCCHHHHCCCCHHHHCCCCCC
Q ss_conf             9719899987999758988234677502-35-259984255430368878753220012200000001431552133222
Q gi|254780398|r   41 ESSGSLDGITVIEIGAGPGNLTQMLLTL-GA-RKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSP  118 (284)
Q Consensus        41 ~~~~~~~~~~VlEIGpG~G~LT~~Ll~~-~~-~~v~aiEiD~~~~~~l~~~~~~~~~~~~ii~~Dal~~d~~~~~~~~~~  118 (284)
                      +.+.+.+|+.|||+|||+|..+..|++. ++ ..|+|||+.++++..+++.....+| +..+..|+.......+.. ..-
T Consensus        70 ~~~~lkpG~~VLdLG~G~G~~~~~la~~Vg~~G~V~aVD~s~~~l~~a~~~a~~~~n-~~~v~~d~~~~~~~~~~~-~~v  147 (232)
T 3id6_C           70 KTNPIRKGTKVLYLGAASGTTISHVSDIIELNGKAYGVEFSPRVVRELLLVAQRRPN-IFPLLADARFPQSYKSVV-ENV  147 (232)
T ss_dssp             SCCSCCTTCEEEEETCTTSHHHHHHHHHHTTTSEEEEEECCHHHHHHHHHHHHHCTT-EEEEECCTTCGGGTTTTC-CCE
T ss_pred             HHCCCCCCCEEEEECCCCCHHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHCCC-CCCEEECCCCHHHCCCCC-CEE
T ss_conf             305889999999967718899999999715687699997999999999976565467-763010146754537777-369


Q ss_pred             EEEEECCCHHHHHHHHH
Q ss_conf             01120232246788999
Q gi|254780398|r  119 IRIIANLPYNIGTRLLF  135 (284)
Q Consensus       119 ~~vvgNLPYnIss~Il~  135 (284)
                      ..++..+.+.-..++++
T Consensus       148 d~i~~~~~~~~~~~~~l  164 (232)
T 3id6_C          148 DVLYVDIAQPDQTDIAI  164 (232)
T ss_dssp             EEEEECCCCTTHHHHHH
T ss_pred             EEEEEECCCCCHHHHHH
T ss_conf             99998525732199999


No 128
>1yzh_A TRNA (guanine-N(7)-)-methyltransferase; alpha-beta-alpha sandwich, S- adenosylmethionine-dependent, structural genomics, PSI; 2.02A {Streptococcus pneumoniae} SCOP: c.66.1.53
Probab=98.19  E-value=2.9e-06  Score=57.91  Aligned_cols=79  Identities=15%  Similarity=0.230  Sum_probs=58.2

Q ss_pred             CCCEEEEECCCCCHHHHHHHHCCCC-EEEEECCCCCCHHHHHHHHHHH-HCCCCCCHHHHCCCCHHHHCCCCCCEEEEEC
Q ss_conf             9987999758988234677502352-5998425543036887875322-0012200000001431552133222011202
Q gi|254780398|r   47 DGITVIEIGAGPGNLTQMLLTLGAR-KVIVIEKDQQFFPILKDISSQH-PNRLEIIQDDALKVDFEKFFNISSPIRIIAN  124 (284)
Q Consensus        47 ~~~~VlEIGpG~G~LT~~Ll~~~~~-~v~aiEiD~~~~~~l~~~~~~~-~~~~~ii~~Dal~~d~~~~~~~~~~~~vvgN  124 (284)
                      .+..|||||||.|..+..+++..+. .+++||+....+..+.+..... -.++.++++||..+  .+....+.-..|.-|
T Consensus        41 ~~p~iLEIGcG~G~~~~~lA~~~P~~~~igiD~~~~~v~~a~~~~~~~~l~Nv~~~~~da~~l--~~~~~~~~~d~v~~~  118 (214)
T 1yzh_A           41 DNPIHVEVGSGKGAFVSGMAKQNPDINYIGIDIQKSVLSYALDKVLEVGVPNIKLLWVDGSDL--TDYFEDGEIDRLYLN  118 (214)
T ss_dssp             CCCEEEEESCTTSHHHHHHHHHCTTSEEEEEESCHHHHHHHHHHHHHHCCSSEEEEECCSSCG--GGTSCTTCCSEEEEE
T ss_pred             CCCCEEEEEEECCHHHHHHHHHCCCCCEEEEECCHHHHHHHHHHHHHHCCCCEEEEECCHHHH--HHHCCCCEEEEEECC
T ss_conf             997189994108699999999789997797407788899999999983998644552369887--421257743111124


Q ss_pred             CCH
Q ss_conf             322
Q gi|254780398|r  125 LPY  127 (284)
Q Consensus       125 LPY  127 (284)
                      .|-
T Consensus       119 fPd  121 (214)
T 1yzh_A          119 FSD  121 (214)
T ss_dssp             SCC
T ss_pred             CCC
T ss_conf             678


No 129
>2yx1_A Hypothetical protein MJ0883; methyl transferase, tRNA modification enzyme; HET: SFG; 2.20A {Methanocaldococcus jannaschii} PDB: 2zzn_A* 2zzm_A*
Probab=98.17  E-value=2.2e-06  Score=58.61  Aligned_cols=90  Identities=21%  Similarity=0.252  Sum_probs=67.1

Q ss_pred             HHHHHHCCCCCCCEEEEECCCCCHHHHHHHHCCCCEEEEECCCCCCHHHHHHHHHH--HHCCCCCCHHHHCCCCHHHHCC
Q ss_conf             99999719899987999758988234677502352599842554303688787532--2001220000000143155213
Q gi|254780398|r   37 KKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQ--HPNRLEIIQDDALKVDFEKFFN  114 (284)
Q Consensus        37 ~~iv~~~~~~~~~~VlEIGpG~G~LT~~Ll~~~~~~v~aiEiD~~~~~~l~~~~~~--~~~~~~ii~~Dal~~d~~~~~~  114 (284)
                      .++++..  .+++.||+.|+|.|.++.+++  ++++|+|+|+++..++.+++....  ..++++++++|+..++.     
T Consensus       187 ~ri~~~~--~~~~~vlD~f~g~G~~~i~~~--~~~~v~a~d~n~~a~~~~~~N~~~N~~~~~v~~~~~D~~~~~~-----  257 (336)
T 2yx1_A          187 ARIMKKV--SLNDVVVDMFAGVGPFSIACK--NAKKIYAIDINPHAIELLKKNIKLNKLEHKIIPILSDVREVDV-----  257 (336)
T ss_dssp             HHHHHHC--CTTCEEEETTCTTSHHHHHTT--TSSEEEEEESCHHHHHHHHHHHHHTTCTTTEEEEESCGGGCCC-----
T ss_pred             HHHHHHC--CCCCEEEEECCCCCHHHHHCC--CCCEEEEEECCHHHHHHHHHHHHHHCCCCCEEEEECCHHHCCC-----
T ss_conf             8766411--789889996576467665313--5516999979999999999999982998758999575345456-----


Q ss_pred             CCCCEEEEECCCHHHHHHHHHHHH
Q ss_conf             322201120232246788999998
Q gi|254780398|r  115 ISSPIRIIANLPYNIGTRLLFNWI  138 (284)
Q Consensus       115 ~~~~~~vvgNLPYnIss~Il~~ll  138 (284)
                        ..-+|+.|+|+.- ..++...+
T Consensus       258 --~~D~Ii~~~P~~~-~~~l~~a~  278 (336)
T 2yx1_A          258 --KGNRVIMNLPKFA-HKFIDKAL  278 (336)
T ss_dssp             --CEEEEEECCTTTG-GGGHHHHH
T ss_pred             --CCCEEEECCHHHH-HHHHHHHH
T ss_conf             --8749996580466-99999999


No 130
>1ri5_A MRNA capping enzyme; methyltransferase, M7G, messenger RNA CAP, structural genomics, PSI, protein structure initiative; 2.10A {Encephalitozoon cuniculi} SCOP: c.66.1.34 PDB: 1ri2_A* 1ri3_A* 1ri1_A* 1ri4_A 1z3c_A* 2hv9_A*
Probab=98.17  E-value=2.7e-06  Score=58.16  Aligned_cols=66  Identities=11%  Similarity=0.074  Sum_probs=54.2

Q ss_pred             CCCCCCEEEEECCCCCHHHHHHHHCCCCEEEEECCCCCCHHHHHHHHHHHH--CCCCCCHHHHCCCCH
Q ss_conf             989998799975898823467750235259984255430368878753220--012200000001431
Q gi|254780398|r   44 GSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQHP--NRLEIIQDDALKVDF  109 (284)
Q Consensus        44 ~~~~~~~VlEIGpG~G~LT~~Ll~~~~~~v~aiEiD~~~~~~l~~~~~~~~--~~~~ii~~Dal~~d~  109 (284)
                      ...+++.|||+|||.|..+..+++.+..+|++|++++.+++.+++......  .++.++.+|+...++
T Consensus        61 ~~~~~~~VLDlGCG~G~~~~~~~~~~~~~v~GiD~S~~~l~~a~~r~~~~~~~~~~~f~~~d~~~~~~  128 (298)
T 1ri5_A           61 YTKRGDSVLDLGCGKGGDLLKYERAGIGEYYGVDIAEVSINDARVRARNMKRRFKVFFRAQDSYGRHM  128 (298)
T ss_dssp             HCCTTCEEEEETCTTTTTHHHHHHHTCSEEEEEESCHHHHHHHHHHHHTSCCSSEEEEEESCTTTSCC
T ss_pred             HCCCCCEEEEECCCCCHHHHHHHHCCCCEEEEECCCHHHHHHHHHHHHHCCCCCCEEEEECCHHHHCC
T ss_conf             48995989996370878999999669985887589999999999998752887523778645655210


No 131
>2vdv_E TRNA (guanine-N(7)-)-methyltransferase; S-adenosyl-L-methionine, phosphorylation, M7G, spout MT, tRNA processing; HET: SAM; 2.30A {Saccharomyces cerevisiae} PDB: 2vdu_E
Probab=98.16  E-value=3.7e-06  Score=57.29  Aligned_cols=80  Identities=19%  Similarity=0.302  Sum_probs=56.1

Q ss_pred             CCCCCEEEEECCCCCHHHHHHHHCCCC-EEEEECCCCCCHHHHHHHH----------HHHHCCCCCCHHHHCCCCHHHHC
Q ss_conf             899987999758988234677502352-5998425543036887875----------32200122000000014315521
Q gi|254780398|r   45 SLDGITVIEIGAGPGNLTQMLLTLGAR-KVIVIEKDQQFFPILKDIS----------SQHPNRLEIIQDDALKVDFEKFF  113 (284)
Q Consensus        45 ~~~~~~VlEIGpG~G~LT~~Ll~~~~~-~v~aiEiD~~~~~~l~~~~----------~~~~~~~~ii~~Dal~~d~~~~~  113 (284)
                      ..+.-.|||||||.|..+..+++..+. .+++||++...+..+.+..          ...+ |+.++.+||.++ +++++
T Consensus        47 ~~~~p~iLeIGcG~G~~l~~lA~~~p~~~~iGiEi~~~~v~~~~~ri~~~~~~~a~~~~l~-Ni~~~~~da~~~-l~~~~  124 (246)
T 2vdv_E           47 MTKKVTIADIGCGFGGLMIDLSPAFPEDLILGMEIRVQVTNYVEDRIIALRNNTASKHGFQ-NINVLRGNAMKF-LPNFF  124 (246)
T ss_dssp             BSCCEEEEEETCTTSHHHHHHHHHSTTSEEEEEESCHHHHHHHHHHHHHHHHTC-CCSTTT-TEEEEECCTTSC-GGGTS
T ss_pred             CCCCCEEEEECCCCCHHHHHHHHHCCCCCEEEEECCHHHHHHHHHHHHHHHHHHHHHCCCC-EEEEEECCHHHH-HHHHC
T ss_conf             6899879998268998999999868987589885036899999999999987478774987-199993734888-88751


Q ss_pred             CCCCCEEEEECCC
Q ss_conf             3322201120232
Q gi|254780398|r  114 NISSPIRIIANLP  126 (284)
Q Consensus       114 ~~~~~~~vvgNLP  126 (284)
                      ..++--.|.-|-|
T Consensus       125 ~~~s~d~v~i~FP  137 (246)
T 2vdv_E          125 EKGQLSKMFFCFP  137 (246)
T ss_dssp             CTTCEEEEEEESC
T ss_pred             CCCCCCEEEEECC
T ss_conf             4677673489889


No 132
>3ggd_A SAM-dependent methyltransferase; YP_325210.1, structural genomics, joint center for structural genomics, JCSG; HET: SAH; 2.11A {Anabaena variabilis atcc 29413}
Probab=98.16  E-value=1.1e-06  Score=60.62  Aligned_cols=64  Identities=16%  Similarity=0.189  Sum_probs=53.5

Q ss_pred             CCCCCEEEEECCCCCHHHHHHHHCCCCEEEEECCCCCCHHHHHHHHHHHHCCCCCCHHHHCCCCHHH
Q ss_conf             8999879997589882346775023525998425543036887875322001220000000143155
Q gi|254780398|r   45 SLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEK  111 (284)
Q Consensus        45 ~~~~~~VlEIGpG~G~LT~~Ll~~~~~~v~aiEiD~~~~~~l~~~~~~~~~~~~ii~~Dal~~d~~~  111 (284)
                      ..++..|||||||.|.+|..|+++++ +|++||+++.+++.+++....  .++++.++|+.......
T Consensus        54 ~~~~~~vLDvGCG~G~~~~~la~~g~-~v~gvD~s~~~i~~Ar~~~~~--~~~~~~~~d~~~~~~~~  117 (245)
T 3ggd_A           54 FNPELPLIDFACGNGTQTKFLSQFFP-RVIGLDVSKSALEIAAKENTA--ANISYRLLDGLVPEQAA  117 (245)
T ss_dssp             SCTTSCEEEETCTTSHHHHHHHHHSS-CEEEEESCHHHHHHHHHHSCC--TTEEEEECCTTCHHHHH
T ss_pred             CCCCCEEEEECCCCCHHHHHHHCCCC-EEEEEECCHHHHHHHHHHCCC--CCEEEEEEECCCCCCCC
T ss_conf             69998589975879787999763784-599850999999999986746--75069995013653222


No 133
>1wxx_A TT1595, hypothetical protein TTHA1280; thermus thermophillus, methyltransferase, adoMet, structural genomics; 1.80A {Thermus thermophilus HB8} SCOP: b.122.1.9 c.66.1.51 PDB: 1wxw_A 2cww_A*
Probab=98.16  E-value=1.5e-06  Score=59.74  Aligned_cols=101  Identities=12%  Similarity=0.149  Sum_probs=73.4

Q ss_pred             CCC--CCCCHHHHHHHHHHCCCCCCCEEEEECCCCCHHHHHHHHCCCCEEEEECCCCCCHHHHHHHHHHHH-CCCCCCHH
Q ss_conf             841--123989999999971989998799975898823467750235259984255430368878753220-01220000
Q gi|254780398|r   26 GQN--FLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQHP-NRLEIIQD  102 (284)
Q Consensus        26 GQn--FL~d~~i~~~iv~~~~~~~~~~VlEIGpG~G~LT~~Ll~~~~~~v~aiEiD~~~~~~l~~~~~~~~-~~~~ii~~  102 (284)
                      ||+  |..|....+..++.   .+++.||++|+|+|.+|.+++.. +.+|+++|+++..++.+++....+. .+++++++
T Consensus       189 g~ktG~flDqr~~r~~~~~---~~g~~VLDl~~g~G~~s~~~a~~-~~~V~~vD~s~~al~~a~~n~~~ng~~~~~~~~~  264 (382)
T 1wxx_A          189 GQKTGAYLDQRENRLYMER---FRGERALDVFSYAGGFALHLALG-FREVVAVDSSAEALRRAEENARLNGLGNVRVLEA  264 (382)
T ss_dssp             TSCCCCCGGGHHHHHHGGG---CCEEEEEEETCTTTHHHHHHHHH-EEEEEEEESCHHHHHHHHHHHHHTTCTTEEEEES
T ss_pred             CCCCCCHHHHHHHHHHHHH---HCCCEEEECCCCCCHHHHHHHHC-CCCEEECCCCHHHHHHHHHHHHHCCCCCCEEEEC
T ss_conf             3556721566665889876---26980410467787799999846-7726720463999999999999728688667860


Q ss_pred             HHCCCCHHHHCCCC-CCEEEEECCCHHHHH
Q ss_conf             00014315521332-220112023224678
Q gi|254780398|r  103 DALKVDFEKFFNIS-SPIRIIANLPYNIGT  131 (284)
Q Consensus       103 Dal~~d~~~~~~~~-~~~~vvgNLPYnIss  131 (284)
                      |+.++- ..+...+ ..-.||-+.|+...+
T Consensus       265 D~~~~l-~~~~~~~~~fD~VilDpP~~~~~  293 (382)
T 1wxx_A          265 NAFDLL-RRLEKEGERFDLVVLDPPAFAKG  293 (382)
T ss_dssp             CHHHHH-HHHHHTTCCEEEEEECCCCSCCS
T ss_pred             CHHHHH-HHHHHHCCCCCEEEECCCCCCCC
T ss_conf             177777-77786267998699827211589


No 134
>1xva_A Glycine N-methyltransferase; HET: SAM; 2.20A {Escherichia coli} SCOP: c.66.1.5 PDB: 1d2c_A 1kia_A* 1nbh_A* 1bhj_A* 2idj_A 2idk_A* 1d2g_A 1d2h_A* 1nbi_A* 1r8x_A 1r8y_A 1r74_A* 2azt_A*
Probab=98.14  E-value=2.4e-06  Score=58.41  Aligned_cols=73  Identities=14%  Similarity=0.143  Sum_probs=52.0

Q ss_pred             HHHHHHHHCCCCCCCEEEEECCCCCHHHHHHHHCCCCEEEEECCCCCCHHHHHHHHHHHHC-----CCCCCHHHHCCCC
Q ss_conf             9999999719899987999758988234677502352599842554303688787532200-----1220000000143
Q gi|254780398|r   35 ILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQHPN-----RLEIIQDDALKVD  108 (284)
Q Consensus        35 i~~~iv~~~~~~~~~~VlEIGpG~G~LT~~Ll~~~~~~v~aiEiD~~~~~~l~~~~~~~~~-----~~~ii~~Dal~~d  108 (284)
                      ..+.+.+.+....+..|||||||+|.+|..|++.++ +|+++|+.+.+++.+++.......     +..+..+|++..+
T Consensus        44 ~~~~~~~~l~~~~~~~vLDiGcG~G~~~~~la~~g~-~v~gvD~s~~ml~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~  121 (292)
T 1xva_A           44 YKAWLLGLLRQHGCHRVLDVACGTGVDSIMLVEEGF-SVTSVDASDKMLKYALKERWNRRKEPAFDKWVIEEANWLTLD  121 (292)
T ss_dssp             HHHHHHHHHHHTTCCEEEESSCTTSHHHHHHHHTTC-EEEEEESCHHHHHHHHHHHHHTTTSHHHHTCEEEECCGGGHH
T ss_pred             HHHHHHHHHHHCCCCEEEEECCCCCHHHHHHHHCCC-EEEEEECCHHHHHHHHHHHHHCCCCCCCCEEEEEECCCCCCC
T ss_conf             999999964131849999904788499999997799-699998999999999999986444656313566411101244


No 135
>3jwh_A HEN1; methyltransferase; HET: SAH; 2.20A {Anabaena variabilis} PDB: 3jwj_A
Probab=98.12  E-value=4.7e-06  Score=56.60  Aligned_cols=79  Identities=19%  Similarity=0.251  Sum_probs=60.4

Q ss_pred             HHHHHHHHHHCCCCCCCEEEEECCCCCHHHHHHHHCCC-CEEEEECCCCCCHHHHHHHHHHH------HCCCCCCHHHHC
Q ss_conf             89999999971989998799975898823467750235-25998425543036887875322------001220000000
Q gi|254780398|r   33 LNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGA-RKVIVIEKDQQFFPILKDISSQH------PNRLEIIQDDAL  105 (284)
Q Consensus        33 ~~i~~~iv~~~~~~~~~~VlEIGpG~G~LT~~Ll~~~~-~~v~aiEiD~~~~~~l~~~~~~~------~~~~~ii~~Dal  105 (284)
                      +.-.+.+.+.+.....+.|||||||+|.++..|++.++ .+|+++|+++.+++.+++.+...      ..++....+|..
T Consensus        15 ~~r~~~v~~~l~~~~~~rVLDvGcG~G~~~~~l~~~~~~~~v~gvD~s~~~l~~A~~~~~~~~~~~~~~~~~~~~~~~~~   94 (217)
T 3jwh_A           15 QQRMNGVVAALKQSNARRVIDLGCGQGNLLKILLKDSFFEQITGVDVSYRSLEIAQERLDRLRLPRNQWERLQLIQGALT   94 (217)
T ss_dssp             HHHHHHHHHHHHHTTCCEEEEETCTTCHHHHHHHHCTTCSEEEEEESCHHHHHHHHHHHTTCCCCHHHHTTEEEEECCTT
T ss_pred             HHHHHHHHHHHHCCCCCEEEEEECCCCHHHHHHHHHCCCCEEECCCCCHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCHH
T ss_conf             99999999973321839899981888799999998476522521038999999999988762453112222100126643


Q ss_pred             CCCHHH
Q ss_conf             143155
Q gi|254780398|r  106 KVDFEK  111 (284)
Q Consensus       106 ~~d~~~  111 (284)
                      ..+++.
T Consensus        95 ~~~~~~  100 (217)
T 3jwh_A           95 YQDKRF  100 (217)
T ss_dssp             SCCGGG
T ss_pred             HCHHCC
T ss_conf             440004


No 136
>3c3p_A Methyltransferase; NP_951602.1, structural genomics, joint center for structural genomics, JCSG, protein structure initiative; 1.90A {Geobacter sulfurreducens pca}
Probab=98.12  E-value=2.1e-06  Score=58.75  Aligned_cols=79  Identities=15%  Similarity=0.170  Sum_probs=59.9

Q ss_pred             CCCHHHHHHHHHHCCCCCCCEEEEECCCCCHHHHHHHHCCC--CEEEEECCCCCCHHHHHHHHHH--HHCCCCCCHHHHC
Q ss_conf             23989999999971989998799975898823467750235--2599842554303688787532--2001220000000
Q gi|254780398|r   30 LLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGA--RKVIVIEKDQQFFPILKDISSQ--HPNRLEIIQDDAL  105 (284)
Q Consensus        30 L~d~~i~~~iv~~~~~~~~~~VlEIGpG~G~LT~~Ll~~~~--~~v~aiEiD~~~~~~l~~~~~~--~~~~~~ii~~Dal  105 (284)
                      .+++...+-+...+.......|||||+|.|.-|..+++.-+  .+|+++|+|+.+++.+++.+..  ..+++++++||++
T Consensus        39 ~i~~~~g~~L~~L~~~~~~~~ILEiGtg~G~st~~la~~~~~~g~v~~id~~~~~~~~ar~~~~~~g~~~~i~~~~gda~  118 (210)
T 3c3p_A           39 IVDRQTGRLLYLLARIKQPQLVVVPGDGLGCASWWFARAISISSRVVMIDPDRDNVEHARRMLHDNGLIDRVELQVGDPL  118 (210)
T ss_dssp             CCCHHHHHHHHHHHHHHCCSEEEEESCGGGHHHHHHHTTSCTTCEEEEEESCHHHHHHHHHHHHHHSGGGGEEEEESCHH
T ss_pred             CCCHHHHHHHHHHHHHHCCCEEEEEECCCHHHHHHHHHHCCCCEEEEEEECCCCHHHHHHHHHHHCCCCCEEEEEECCHH
T ss_conf             78989999999998856809899950814399999999755681999997751037899987987298732678613454


Q ss_pred             CCC
Q ss_conf             143
Q gi|254780398|r  106 KVD  108 (284)
Q Consensus       106 ~~d  108 (284)
                      ++.
T Consensus       119 ~~~  121 (210)
T 3c3p_A          119 GIA  121 (210)
T ss_dssp             HHH
T ss_pred             HCC
T ss_conf             302


No 137
>3m33_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, MCSG, midwest center for structural genomics; 2.19A {Deinococcus radiodurans}
Probab=98.11  E-value=9.6e-06  Score=54.69  Aligned_cols=94  Identities=11%  Similarity=0.105  Sum_probs=59.9

Q ss_pred             CCCCCHHHHHHHHHCCC-CC--CCCCCCCCCCCHHHHHH--HHHHCCCCCCCEEEEECCCCCHHHHHHHHCCCCEEEEEC
Q ss_conf             78884479999998189-84--33658411239899999--999719899987999758988234677502352599842
Q gi|254780398|r    3 MNNKSHSLKTILSHYKI-IP--KKYMGQNFLLDLNILKK--IAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIE   77 (284)
Q Consensus         3 ~~~~~~~i~~ll~~~~~-~p--~k~lGQnFL~d~~i~~~--iv~~~~~~~~~~VlEIGpG~G~LT~~Ll~~~~~~v~aiE   77 (284)
                      ||....+--.+.+.++- +.  .+.+.   --++.....  +++.  +.++..|||||||+|.+|..|++.++ +|++++
T Consensus         4 ~~~~~~~~d~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~l~~~--l~pg~rVLDvGCGtG~~a~~La~~g~-~V~giD   77 (226)
T 3m33_A            4 MNHSRESYDRLARELGGYRHPWARVLS---GPDPELTFDLWLSRL--LTPQTRVLEAGCGHGPDAARFGPQAA-RWAAYD   77 (226)
T ss_dssp             ----CHHHHHHHHHHTTTSCCSCCEES---SSCTTHHHHHHHHHH--CCTTCEEEEESCTTSHHHHHHGGGSS-EEEEEE
T ss_pred             CHHHHHHHHHHHHHHCCCCCHHHHHCC---CCCHHHHHHHHHHHH--CCCCCEEEEECCCCCHHHHHHHCCCC-EEEECC
T ss_conf             236789999999872665353667505---988679999999951--89999799988465864577751686-899657


Q ss_pred             CCCCCHHHHHHHHHHHHCCCCCCHHHHCC
Q ss_conf             55430368878753220012200000001
Q gi|254780398|r   78 KDQQFFPILKDISSQHPNRLEIIQDDALK  106 (284)
Q Consensus        78 iD~~~~~~l~~~~~~~~~~~~ii~~Dal~  106 (284)
                      +++.+++.+++....    ..++++|+..
T Consensus        78 ~S~~mi~~Ar~~~~~----~~~~~~~~~~  102 (226)
T 3m33_A           78 FSPELLKLARANAPH----ADVYEWNGKG  102 (226)
T ss_dssp             SCHHHHHHHHHHCTT----SEEEECCSCS
T ss_pred             CCHHHHHHHHHHCCC----CCEEEEECCC
T ss_conf             999999999985899----9789974666


No 138
>3lcv_B Sisomicin-gentamicin resistance methylase SGM; antibiotic resistance, methyltransferase, transferase; HET: SAM; 2.00A {Micromonospora zionensis} PDB: 3lcu_A*
Probab=98.11  E-value=1.6e-06  Score=59.52  Aligned_cols=65  Identities=14%  Similarity=0.099  Sum_probs=54.2

Q ss_pred             CCCCCEEEEECCCCCHHHHHHHHCCCC-EEEEECCCCCCHHHHHHHHHHHHCCCCCCHHHHCCCCH
Q ss_conf             899987999758988234677502352-59984255430368878753220012200000001431
Q gi|254780398|r   45 SLDGITVIEIGAGPGNLTQMLLTLGAR-KVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDF  109 (284)
Q Consensus        45 ~~~~~~VlEIGpG~G~LT~~Ll~~~~~-~v~aiEiD~~~~~~l~~~~~~~~~~~~ii~~Dal~~d~  109 (284)
                      +.++..|||||||.|.+|..+++.++. .|+++|+++.+++.+++.+....-+++...+|+++...
T Consensus       130 ~~~~~~vlD~GcG~G~~~~~l~~~~~~~~v~g~D~s~~~i~~a~~~~~~~~~~~~~~~~d~~~~~~  195 (281)
T 3lcv_B          130 LPRPNTLRDLACGLNPLAAPWMGLPAETVYIASDIDARLVGFVDEALTRLNVPHRTNVADLLEDRL  195 (281)
T ss_dssp             SCCCSEEEETTCTTGGGCCTTTTCCTTCEEEEEESBHHHHHHHHHHHHHTTCCEEEEECCTTTSCC
T ss_pred             CCCCCEEEEECCCCCHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHCCCCEEEEEECHHHHCC
T ss_conf             899986998389888899999974997749996599999999999998668873899813544076


No 139
>1x19_A CRTF-related protein; methyltransferase, bacteriochllochlorophyll, BCHU, SAM, SAH, S-adenosylmethyonine, S-adenosylhomocysteine, ADO-Met; 2.27A {Chlorobium tepidum tls} PDB: 1x1a_A* 1x1b_A* 1x1c_A* 1x1d_A*
Probab=98.11  E-value=2.1e-05  Score=52.55  Aligned_cols=92  Identities=12%  Similarity=0.232  Sum_probs=67.1

Q ss_pred             HHHHHHHHHCCCCCCCEEEEECCCCCHHHHHHHHCCCC-EEEEECCCCCCHHHHHHHHHHH--HCCCCCCHHHHCCCCHH
Q ss_conf             99999999719899987999758988234677502352-5998425543036887875322--00122000000014315
Q gi|254780398|r   34 NILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGAR-KVIVIEKDQQFFPILKDISSQH--PNRLEIIQDDALKVDFE  110 (284)
Q Consensus        34 ~i~~~iv~~~~~~~~~~VlEIGpG~G~LT~~Ll~~~~~-~v~aiEiD~~~~~~l~~~~~~~--~~~~~ii~~Dal~~d~~  110 (284)
                      ..+..+++..+......|+|||+|.|.++..++++.+. +++++++ +..++..++.....  .++++++.+|+++-+++
T Consensus       177 ~~~~~~~~~~~~~~~~~vlDiG~G~G~~~~~l~~~~p~~~~~~~Dl-p~~~~~a~~~~~~~~l~~rv~~~~gD~~~~~~p  255 (359)
T 1x19_A          177 FAIQLLLEEAKLDGVKKMIDVGGGIGDISAAMLKHFPELDSTILNL-PGAIDLVNENAAEKGVADRMRGIAVDIYKESYP  255 (359)
T ss_dssp             HHHHHHHHHCCCTTCCEEEEESCTTCHHHHHHHHHCTTCEEEEEEC-GGGHHHHHHHHHHTTCTTTEEEEECCTTTSCCC
T ss_pred             HHHHHHHHHCCCCCCCEEEECCCCCCHHHHHHHHHCCCEEEEEECC-HHHHHHHHHHHHHCCCCCCCEEEECCHHHCCCC
T ss_conf             9999999847876787799767989799999998399228998166-888999998667507763452783457763578


Q ss_pred             HHCCCCCCEEEEECCCHHHHH
Q ss_conf             521332220112023224678
Q gi|254780398|r  111 KFFNISSPIRIIANLPYNIGT  131 (284)
Q Consensus       111 ~~~~~~~~~~vvgNLPYnIss  131 (284)
                      +.     ...+.+|.=++.+.
T Consensus       256 ~~-----D~v~~~~vLh~~~d  271 (359)
T 1x19_A          256 EA-----DAVLFCRILYSANE  271 (359)
T ss_dssp             CC-----SEEEEESCGGGSCH
T ss_pred             CC-----CEEEEEEECCCCCH
T ss_conf             76-----50455630115998


No 140
>1uwv_A 23S rRNA (uracil-5-)-methyltransferase RUMA; RNA modification, iron-sulfur cluster, RNA processing; 1.95A {Escherichia coli} SCOP: b.40.4.12 c.66.1.40 PDB: 2bh2_A*
Probab=98.10  E-value=9e-06  Score=54.88  Aligned_cols=160  Identities=11%  Similarity=0.088  Sum_probs=102.4

Q ss_pred             CCCHHHHHHHHHHCCCCCCCEEEEECCCCCHHHHHHHHCCCCEEEEECCCCCCHHHHHHHHHHHH-CCCCCCHHHHCCCC
Q ss_conf             23989999999971989998799975898823467750235259984255430368878753220-01220000000143
Q gi|254780398|r   30 LLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQHP-NRLEIIQDDALKVD  108 (284)
Q Consensus        30 L~d~~i~~~iv~~~~~~~~~~VlEIGpG~G~LT~~Ll~~~~~~v~aiEiD~~~~~~l~~~~~~~~-~~~~ii~~Dal~~d  108 (284)
                      -..+.+.+.+.+.++..+++.|+|.-+|.|.+|..|++. +++|++||+++..++.+++....+. .+++.+++|+.+.-
T Consensus       269 ~~~~~l~~~v~~~l~~~~~~~vlDLYcG~G~fsl~La~~-~~~V~gvE~~~~Av~~A~~na~~n~~~n~~f~~~~~~~~~  347 (433)
T 1uwv_A          269 GVNQKMVARALEWLDVQPEDRVLDLFCGMGNFTLPLATQ-AASVVGVEGVPALVEKGQQNARLNGLQNVTFYHENLEEDV  347 (433)
T ss_dssp             HHHHHHHHHHHHHHTCCTTCEEEEESCTTTTTHHHHHTT-SSEEEEEESCHHHHHHHHHHHHHTTCCSEEEEECCTTSCC
T ss_pred             HHHHHHHHHHHHHHCCCCCCEEEEECCCCCHHHHHHHHH-CCEEEEEECCHHHHHHHHHHHHHCCCCCEEEEECCHHHHH
T ss_conf             889999999999844568877999568851777876650-5624566354999999999999849975699914756664


Q ss_pred             HHHHCCCCCCEEEEECCCHHHHHHHHHHHHHHHCCCCCCCHHHHEEEHHHHHHHHHCCCH--HHHHHHHHHHCCCCCEEE
Q ss_conf             155213322201120232246788999998520100000011020334478875301231--233234543201332012
Q gi|254780398|r  109 FEKFFNISSPIRIIANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNS--PHYGRLSVLTGWRTKATM  186 (284)
Q Consensus       109 ~~~~~~~~~~~~vvgNLPYnIss~Il~~ll~~~~~~~~~~~~vlmvQkEvA~Rl~a~pg~--k~Yg~LSv~~q~~~~v~~  186 (284)
                      .........+-.||-+-|=.=....+..++...  +.   + ++++        -..|.|  +|   |..++..-|.+  
T Consensus       348 ~~~~~~~~~~d~vilDPPR~G~~~~~~~l~~~~--p~---~-IvYV--------SCnP~TlaRD---l~~L~~~gy~l--  408 (433)
T 1uwv_A          348 TKQPWAKNGFDKVLLDPARAGAAGVMQQIIKLE--PI---R-IVYV--------SCNPATLARD---SEALLKAGYTI--  408 (433)
T ss_dssp             SSSGGGTTCCSEEEECCCTTCCHHHHHHHHHHC--CS---E-EEEE--------ESCHHHHHHH---HHHHHHTTCEE--
T ss_pred             HHHHHHCCCCCEEEECCCCCCHHHHHHHHHHCC--CC---E-EEEE--------ECCHHHHHHH---HHHHHHCCCEE--
T ss_conf             430665279998998999807099999998369--79---5-9999--------0898999989---99998789668--


Q ss_pred             ECCCCCCEECCCC-CCCEEEEEECCC
Q ss_conf             0001100001057-875788730125
Q gi|254780398|r  187 MFDISPHVFFPSP-KVTSTVIHFIPH  211 (284)
Q Consensus       187 ~~~V~~~~F~P~P-kVdS~vi~l~pk  211 (284)
                       ..+-+-.+||.. .|.+ |+.|++.
T Consensus       409 -~~i~~~D~FP~T~HvE~-v~~l~R~  432 (433)
T 1uwv_A          409 -ARLAMLDMFPHTGHLES-MVLFSRV  432 (433)
T ss_dssp             -EEEEEECCSTTSSCCEE-EEEEEC-
T ss_pred             -EEEEEEECCCCCCEEEE-EEEEEEC
T ss_conf             -59999533899861899-9999976


No 141
>3dr5_A Putative O-methyltransferase; Q8NRD3, CGL1119, PF01596, CGR117, NESG, structural genomics, PSI-2, protein structure initiative; 2.25A {Corynebacterium glutamicum}
Probab=98.09  E-value=4.3e-06  Score=56.84  Aligned_cols=73  Identities=16%  Similarity=0.254  Sum_probs=59.1

Q ss_pred             HHHHHHHHCCCCCCCEEEEECCCCCHHHHHHHHCC--CCEEEEECCCCCCHHHHHHHHHHH---HCCCCCCHHHHCCC
Q ss_conf             99999997198999879997589882346775023--525998425543036887875322---00122000000014
Q gi|254780398|r   35 ILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLG--ARKVIVIEKDQQFFPILKDISSQH---PNRLEIIQDDALKV  107 (284)
Q Consensus        35 i~~~iv~~~~~~~~~~VlEIGpG~G~LT~~Ll~~~--~~~v~aiEiD~~~~~~l~~~~~~~---~~~~~ii~~Dal~~  107 (284)
                      .+.-++..+.......|||||+|.|.-|..|++.-  -.+|++||.|+.+++.+++.+...   +++++++.||++++
T Consensus        44 ~l~~La~~~~~~~~~~vlEiGt~~G~stl~la~al~~~g~l~tIE~~~e~~~~Ar~~~~~ag~~~~rv~~i~gda~e~  121 (221)
T 3dr5_A           44 LLTTLAATTNGNGSTGAIAITPAAGLVGLYILNGLADNTTLTCIDPESEHQRQAKALFREAGYSPSRVRFLLSRPLDV  121 (221)
T ss_dssp             HHHHHHHHSCCTTCCEEEEESTTHHHHHHHHHHHSCTTSEEEEECSCHHHHHHHHHHHHHTTCCGGGEEEECSCHHHH
T ss_pred             HHHHHHHHHCCCCCCEEEEECCCHHHHHHHHHHHCCCCCEEEEEECCHHHHHHHHHHHHHCCCCCCEEEEECCCHHHH
T ss_conf             999999985123899899972805799999998479997899998999999999999996688762467732778998


No 142
>3h2b_A SAM-dependent methyltransferase; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; HET: SAH; 2.00A {Corynebacterium glutamicum atcc 13032}
Probab=98.09  E-value=2e-06  Score=58.99  Aligned_cols=78  Identities=14%  Similarity=0.268  Sum_probs=58.3

Q ss_pred             CCCCCCC---CCHHHHHHHHHHCCCCCCCEEEEECCCCCHHHHHHHHCCCCEEEEECCCCCCHHHHHHHHHHHHCCCCCC
Q ss_conf             6584112---3989999999971989998799975898823467750235259984255430368878753220012200
Q gi|254780398|r   24 YMGQNFL---LDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQHPNRLEII  100 (284)
Q Consensus        24 ~lGQnFL---~d~~i~~~iv~~~~~~~~~~VlEIGpG~G~LT~~Ll~~~~~~v~aiEiD~~~~~~l~~~~~~~~~~~~ii  100 (284)
                      .+|..+=   -|..++.......    +..|||||||+|.++..+++++. +|+++|+.+.+++.+++...    +++++
T Consensus        19 ~~~~~~~~~~~~r~~i~~~~~~~----~grVLDiGcG~G~~~~~la~~g~-~v~gvD~S~~~l~~ar~~~~----~~~~~   89 (203)
T 3h2b_A           19 LLGTVISAEDPDRVLIEPWATGV----DGVILDVGSGTGRWTGHLASLGH-QIEGLEPATRLVELARQTHP----SVTFH   89 (203)
T ss_dssp             HTCSSCCTTCTTHHHHHHHHHHC----CSCEEEETCTTCHHHHHHHHTTC-CEEEECCCHHHHHHHHHHCT----TSEEE
T ss_pred             HHCCCCCCCCCCHHHHHHHCCCC----CCCEEEECCCCCHHHHHHHHCCC-EEEEEECCHHHHHHHHHCCC----CCEEE
T ss_conf             84552488864399999851589----98499973788799999997799-69999697889999974488----73499


Q ss_pred             HHHHCCCCHH
Q ss_conf             0000014315
Q gi|254780398|r  101 QDDALKVDFE  110 (284)
Q Consensus       101 ~~Dal~~d~~  110 (284)
                      ++|+.+++.+
T Consensus        90 ~~d~~~l~~~   99 (203)
T 3h2b_A           90 HGTITDLSDS   99 (203)
T ss_dssp             CCCGGGGGGS
T ss_pred             ECCCCCCCCC
T ss_conf             8621012234


No 143
>2fca_A TRNA (guanine-N(7)-)-methyltransferase; 2.10A {Bacillus subtilis} SCOP: c.66.1.53
Probab=98.07  E-value=7.4e-06  Score=55.39  Aligned_cols=61  Identities=18%  Similarity=0.211  Sum_probs=49.3

Q ss_pred             CCCEEEEECCCCCHHHHHHHHCCCC-EEEEECCCCCCHHHHHHHHHHHH-CCCCCCHHHHCCC
Q ss_conf             9987999758988234677502352-59984255430368878753220-0122000000014
Q gi|254780398|r   47 DGITVIEIGAGPGNLTQMLLTLGAR-KVIVIEKDQQFFPILKDISSQHP-NRLEIIQDDALKV  107 (284)
Q Consensus        47 ~~~~VlEIGpG~G~LT~~Ll~~~~~-~v~aiEiD~~~~~~l~~~~~~~~-~~~~ii~~Dal~~  107 (284)
                      ++..|||||||.|..+..++++.+. .++++|+....+..+.+...... .++.++++|+..+
T Consensus        38 ~~p~vLEIGcG~G~~~~~lA~~~p~~~~iGiD~~~~~i~~a~~~~~~~~l~Nv~~~~~da~~l  100 (213)
T 2fca_A           38 DNPIHIEVGTGKGQFISGMAKQNPDINYIGIELFKSVIVTAVQKVKDSEAQNVKLLNIDADTL  100 (213)
T ss_dssp             CCCEEEEECCTTSHHHHHHHHHCTTSEEEEECSCHHHHHHHHHHHHHSCCSSEEEECCCGGGH
T ss_pred             CCCEEEEEECCCCHHHHHHHHHCCCCCEEEEECCHHHHHHHHHHHHHHCCCCEEEEECCHHHH
T ss_conf             995299980358899999998689982899983599999999999983885446784365887


No 144
>1p91_A Ribosomal RNA large subunit methyltransferase A; RLMA, RRMA, 23S rRNA, NESG, structural genomics, PSI, protein structure initiative; HET: SAM; 2.80A {Escherichia coli} SCOP: c.66.1.33
Probab=98.03  E-value=1.1e-05  Score=54.35  Aligned_cols=90  Identities=14%  Similarity=0.176  Sum_probs=61.7

Q ss_pred             HHHHHHHHHHCCCCCCCEEEEECCCCCHHHHHHHHCCCC-EEEEECCCCCCHHHHHHHHHHHHCCCCCCHHHHCCCCHHH
Q ss_conf             899999999719899987999758988234677502352-5998425543036887875322001220000000143155
Q gi|254780398|r   33 LNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGAR-KVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEK  111 (284)
Q Consensus        33 ~~i~~~iv~~~~~~~~~~VlEIGpG~G~LT~~Ll~~~~~-~v~aiEiD~~~~~~l~~~~~~~~~~~~ii~~Dal~~d~~~  111 (284)
                      +.+.+.+.+.. ..++..|||||||+|..|..+++..+. .++++|+.+.++..+++..   + +++++.+|+.+.++.+
T Consensus        72 ~~~~~~l~~~~-~~~~~~vLDiGcG~G~~~~~l~~~~~~~~~~gvD~s~~~l~~a~~~~---~-~~~~~~~d~~~lp~~d  146 (269)
T 1p91_A           72 DAIVAQLRERL-DDKATAVLDIGCGEGYYTHAFADALPEITTFGLDVSKVAIKAAAKRY---P-QVTFCVASSHRLPFSD  146 (269)
T ss_dssp             HHHHHHHHHHS-CTTCCEEEEETCTTSTTHHHHHHTCTTSEEEEEESCHHHHHHHHHHC---T-TSEEEECCTTSCSBCT
T ss_pred             HHHHHHHHHHC-CCCCCEEEEECCCCCHHHHHHHHHCCCCEEEEEECCHHHHHHHHHCC---C-CCCCEECCHHHCCCCC
T ss_conf             99999998547-88899699968989699999998689968999979588999998517---7-5430002342167899


Q ss_pred             HCCCCCCEEEEECCCHHHH
Q ss_conf             2133222011202322467
Q gi|254780398|r  112 FFNISSPIRIIANLPYNIG  130 (284)
Q Consensus       112 ~~~~~~~~~vvgNLPYnIs  130 (284)
                      -   .-...+....|-++.
T Consensus       147 ~---sfD~v~~~~~~~~~~  162 (269)
T 1p91_A          147 T---SMDAIIRIYAPCKAE  162 (269)
T ss_dssp             T---CEEEEEEESCCCCHH
T ss_pred             C---CEEEEECCCCHHHHH
T ss_conf             8---577874206778999


No 145
>3gjy_A Spermidine synthase; APC62791, structural genomics, PSI-2, protein structure initiative; HET: MSE; 1.47A {Corynebacterium glutamicum atcc 13032}
Probab=98.02  E-value=9.1e-06  Score=54.84  Aligned_cols=98  Identities=20%  Similarity=0.245  Sum_probs=64.9

Q ss_pred             CCCCEEEEECCCCCHHHHHHHHCCCC-EEEEECCCCCCHHHHHHHHHHH-HCCCCCCHHHHCCCCHHHHCCCCCCEE-EE
Q ss_conf             99987999758988234677502352-5998425543036887875322-001220000000143155213322201-12
Q gi|254780398|r   46 LDGITVIEIGAGPGNLTQMLLTLGAR-KVIVIEKDQQFFPILKDISSQH-PNRLEIIQDDALKVDFEKFFNISSPIR-II  122 (284)
Q Consensus        46 ~~~~~VlEIGpG~G~LT~~Ll~~~~~-~v~aiEiD~~~~~~l~~~~~~~-~~~~~ii~~Dal~~d~~~~~~~~~~~~-vv  122 (284)
                      .....||+||.|.|+|++.|++..+. ++++||+|+.+++..++.|.-. ..+++++.+|+.++-. ...  ...|- ||
T Consensus        88 ~~p~rvL~lG~G~g~l~r~l~~~~P~~~v~~VEidp~vi~~ar~~f~~~~~~rv~v~~~Da~~~l~-~~~--~~~~D~Iv  164 (317)
T 3gjy_A           88 ASKLRITHLGGGACTMARYFADVYPQSRNTVVELDAELARLSREWFDIPRAPRVKIRVDDARMVAE-SFT--PASRDVII  164 (317)
T ss_dssp             GGGCEEEEESCGGGHHHHHHHHHSTTCEEEEEESCHHHHHHHHHHSCCCCTTTEEEEESCHHHHHH-TCC--TTCEEEEE
T ss_pred             CCCCEEEEECCCHHHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHCCCCCCCCEEEEECCHHHHHH-HCC--CCCCCEEE
T ss_conf             988779998996899999999978998699997988999999986799889976899784999997-505--57887799


Q ss_pred             ------ECCCHHHHHHHHHHHHHHHCCCCC
Q ss_conf             ------023224678899999852010000
Q gi|254780398|r  123 ------ANLPYNIGTRLLFNWISADTWPPF  146 (284)
Q Consensus       123 ------gNLPYnIss~Il~~ll~~~~~~~~  146 (284)
                            ...|.+..|.=.+..+.....+.+
T Consensus       165 ~D~f~~~~~p~~l~t~ef~~~~~~~L~pgG  194 (317)
T 3gjy_A          165 RDVFAGAITPQNFTTVEFFEHCHRGLAPGG  194 (317)
T ss_dssp             ECCSTTSCCCGGGSBHHHHHHHHHHEEEEE
T ss_pred             EECCCCCCCCCCCCCHHHHHHHHHHCCCCC
T ss_conf             957887667632167999999997418983


No 146
>3cgg_A SAM-dependent methyltransferase; NP_600671.1, methyltransferase domain, structural genomics; HET: NHE CIT; 2.00A {Corynebacterium glutamicum atcc 13032}
Probab=98.01  E-value=5.2e-06  Score=56.34  Aligned_cols=66  Identities=15%  Similarity=0.243  Sum_probs=51.9

Q ss_pred             HHHHCCCCCCCEEEEECCCCCHHHHHHHHCCCCEEEEECCCCCCHHHHHHHHHHHHCCCCCCHHHHCCCCHH
Q ss_conf             999719899987999758988234677502352599842554303688787532200122000000014315
Q gi|254780398|r   39 IAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFE  110 (284)
Q Consensus        39 iv~~~~~~~~~~VlEIGpG~G~LT~~Ll~~~~~~v~aiEiD~~~~~~l~~~~~~~~~~~~ii~~Dal~~d~~  110 (284)
                      ++... ..++..|||+|||+|.++..++++++ +|+++|+.+.+++.++++..+    ++.+.+|+...+++
T Consensus        39 ll~~~-~~~~~~vLDlGCG~G~~~~~l~~~~~-~v~giD~s~~~i~~a~~~~~~----~~~~~~~~~~~~~~  104 (195)
T 3cgg_A           39 LIDAM-APRGAKILDAGCGQGRIGGYLSKQGH-DVLGTDLDPILIDYAKQDFPE----ARWVVGDLSVDQIS  104 (195)
T ss_dssp             HHHHH-SCTTCEEEEETCTTTHHHHHHHHTTC-EEEEEESCHHHHHHHHHHCTT----SEEEECCTTTSCCC
T ss_pred             HHHHC-CCCCCEEEEECCCCCHHHHHHHHCCC-EEEEEECCHHHHHHHHHHCCC----CCEEECCCCCCCCC
T ss_conf             99965-89999899976888599999997699-899997972778999973025----43110243356566


No 147
>3bgv_A MRNA CAP guanine-N7 methyltransferase; alternative splicing, mRNA capping, mRNA processing, nucleus, phosphoprotein, RNA-binding; HET: SAH; 2.30A {Homo sapiens} PDB: 3epp_A*
Probab=97.98  E-value=2.7e-05  Score=51.91  Aligned_cols=97  Identities=15%  Similarity=0.121  Sum_probs=66.4

Q ss_pred             HHHHHHHHC--CCCCCCEEEEECCCCCHHHHHHHHCCCCEEEEECCCCCCHHHHHHHHHHHH--------CCCCCCHHHH
Q ss_conf             999999971--989998799975898823467750235259984255430368878753220--------0122000000
Q gi|254780398|r   35 ILKKIAESS--GSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQHP--------NRLEIIQDDA  104 (284)
Q Consensus        35 i~~~iv~~~--~~~~~~~VlEIGpG~G~LT~~Ll~~~~~~v~aiEiD~~~~~~l~~~~~~~~--------~~~~ii~~Da  104 (284)
                      ++.+.+...  ...++..|||+|||.|..+...++.+..+++++++++..++.+++.+....        .+++.+++|+
T Consensus        20 LI~~~~~~~~~~~~~~~~VLDlGCG~G~dl~k~~~~~~~~v~GiDis~~~i~~A~~r~~~~~~~~~~~~~~~~~f~~~D~   99 (313)
T 3bgv_A           20 LIGEFLEKVRQKKKRDITVLDLGCGKGGDLLKWKKGRINKLVCTDIADVSVKQCQQRYEDMKNRRDSEYIFSAEFITADS   99 (313)
T ss_dssp             HHHHHHHHHHHTC--CCEEEEETCTTTTTHHHHHHTTCSEEEEEESCHHHHHHHHHHHHHHHSSSCC-CCCEEEEEECCT
T ss_pred             HHHHHHHHHHCCCCCCCEEEEEECCCCHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHCCCCCCCCCCCCEEEEECCH
T ss_conf             99999987431578979799973477688999996599979999599999999999988543222223577638996563


Q ss_pred             CCCCHHHHC-CCCCCEEEE---ECCCHHHHH
Q ss_conf             014315521-332220112---023224678
Q gi|254780398|r  105 LKVDFEKFF-NISSPIRII---ANLPYNIGT  131 (284)
Q Consensus       105 l~~d~~~~~-~~~~~~~vv---gNLPYnIss  131 (284)
                      .+....+.. .....+-+|   ..+-|...+
T Consensus       100 ~~~~~~~~~~~~~~~FD~I~~~f~lhy~~~~  130 (313)
T 3bgv_A          100 SKELLIDKFRDPQMCFDICSCQFVCHYSFES  130 (313)
T ss_dssp             TTSCSTTTCSSTTCCEEEEEEETCGGGGGGS
T ss_pred             HHCHHHHHCCCCCCCCEEEEECCCCEECCHH
T ss_conf             2120133146767761089965642421215


No 148
>3p2e_A 16S rRNA methylase; methyltransferase, transferase, NPMA; HET: SAH; 1.68A {Escherichia coli} PDB: 3p2i_A 3p2k_A*
Probab=97.98  E-value=1.4e-05  Score=53.74  Aligned_cols=74  Identities=15%  Similarity=0.096  Sum_probs=55.3

Q ss_pred             HHHHHHCCCCCCCEEEEECCCCCHHHHHHHHCCCC-EEEEECCCCCCHHHHHHHHHHH-----HCCCCCCHHHHCCCCHH
Q ss_conf             99999719899987999758988234677502352-5998425543036887875322-----00122000000014315
Q gi|254780398|r   37 KKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGAR-KVIVIEKDQQFFPILKDISSQH-----PNRLEIIQDDALKVDFE  110 (284)
Q Consensus        37 ~~iv~~~~~~~~~~VlEIGpG~G~LT~~Ll~~~~~-~v~aiEiD~~~~~~l~~~~~~~-----~~~~~ii~~Dal~~d~~  110 (284)
                      +.+.+.. ...+..|||||||+|.+|..|+++++. .|++||+++.+....+......     ..++..+.+|+.++.++
T Consensus        15 ~~l~~~~-~~~~~~vLDvGcG~G~~~~~la~~~p~~~vvGvD~s~~~l~~a~~~~~~~~~~~~~~~v~~~~~d~~~lp~~   93 (225)
T 3p2e_A           15 DELTEII-GQFDRVHIDLGTGDGRNIYKLAINDQNTFYIGIDPVKENLFDISKKIIKKPSKGGLSNVVFVIAAAESLPFE   93 (225)
T ss_dssp             HHHHHHH-TTCSEEEEEETCTTSHHHHHHHHTCTTEEEEEECSCCGGGHHHHHHHTSCGGGTCCSSEEEECCBTTBCCGG
T ss_pred             HHHHHHH-CCCCCEEEEEEEECCHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHHHHHCCCCCHHHHCCCHHHCCCC
T ss_conf             9999864-889998999227673999999986899789998678899999998888754403786433320517449843


Q ss_pred             H
Q ss_conf             5
Q gi|254780398|r  111 K  111 (284)
Q Consensus       111 ~  111 (284)
                      .
T Consensus        94 ~   94 (225)
T 3p2e_A           94 L   94 (225)
T ss_dssp             G
T ss_pred             C
T ss_conf             0


No 149
>2ift_A Putative methylase HI0767; NESG, Y767_haein, structural genomics, PSI-2, protein structure initiative; 2.30A {Haemophilus influenzae} SCOP: c.66.1.46
Probab=97.97  E-value=1.6e-05  Score=53.38  Aligned_cols=107  Identities=17%  Similarity=0.149  Sum_probs=71.5

Q ss_pred             CCCEEEEECCCCCHHHHHHHHCCCCEEEEECCCCCCHHHHHHHHHHHH---CCCCCCHHHHCCCCHHHHCCCCCCEEEEE
Q ss_conf             998799975898823467750235259984255430368878753220---01220000000143155213322201120
Q gi|254780398|r   47 DGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQHP---NRLEIIQDDALKVDFEKFFNISSPIRIIA  123 (284)
Q Consensus        47 ~~~~VlEIGpG~G~LT~~Ll~~~~~~v~aiEiD~~~~~~l~~~~~~~~---~~~~ii~~Dal~~d~~~~~~~~~~~~vvg  123 (284)
                      .+..||++.+|+|++..+.+.+||++|+.||.|...+..+++......   +...+...|++++.... ......-.|+.
T Consensus        53 ~~~~~LDLFaGSG~lglEAlSRGA~~v~fVE~~~~a~~~l~~N~~~l~~~~~~~~~~~~d~~~~l~~~-~~~~~fDlIFl  131 (201)
T 2ift_A           53 HQSECLDGFAGSGSLGFEALSRQAKKVTFLELDKTVANQLKKNLQTLKCSSEQAEVINQSSLDFLKQP-QNQPHFDVVFL  131 (201)
T ss_dssp             TTCEEEETTCTTCHHHHHHHHTTCSEEEEECSCHHHHHHHHHHHHHTTCCTTTEEEECSCHHHHTTSC-CSSCCEEEEEE
T ss_pred             CCCEEEECCCCCCHHHHHHHHCCCCEEEEEEECHHHHHHHHHHHHHHCCCCCHHEEEEHHHHHHHHHC-CCCCCCCEEEE
T ss_conf             99879987888289899999889939999974055778999999983866320023203456554300-24676655885


Q ss_pred             CCCHHH--HHHHHHHHHHHHCCCCCCCHHHHEEEHH
Q ss_conf             232246--7889999985201000000110203344
Q gi|254780398|r  124 NLPYNI--GTRLLFNWISADTWPPFWESLTLLFQKE  157 (284)
Q Consensus       124 NLPYnI--ss~Il~~ll~~~~~~~~~~~~vlmvQkE  157 (284)
                      ..||+-  ...++..+.......   ...++.+..+
T Consensus       132 DPPY~~~~~~~~l~~L~~~~~L~---~~~liilE~~  164 (201)
T 2ift_A          132 DPPFHFNLAEQAISLLCENNWLK---PNALIYVETE  164 (201)
T ss_dssp             CCCSSSCHHHHHHHHHHHTTCEE---EEEEEEEEEE
T ss_pred             CCCCCCCHHHHHHHHHHHCCCCC---CCEEEEEEEC
T ss_conf             79755527999999999879939---8819999965


No 150
>3fzg_A 16S rRNA methylase; methyltransferase, plasmid, transferase; HET: SAM; 2.00A {Escherichia coli}
Probab=97.96  E-value=9.5e-06  Score=54.72  Aligned_cols=71  Identities=8%  Similarity=0.059  Sum_probs=53.2

Q ss_pred             HHHHHHHHHHCCCCCCCEEEEECCCCCHHHHHHHHCCCC-EEEEECCCCCCHHHHHHHHHHHHCCCCCCHHHHC
Q ss_conf             899999999719899987999758988234677502352-5998425543036887875322001220000000
Q gi|254780398|r   33 LNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGAR-KVIVIEKDQQFFPILKDISSQHPNRLEIIQDDAL  105 (284)
Q Consensus        33 ~~i~~~iv~~~~~~~~~~VlEIGpG~G~LT~~Ll~~~~~-~v~aiEiD~~~~~~l~~~~~~~~~~~~ii~~Dal  105 (284)
                      +...+.+...+.  ++..|||||||+|.++..+++..+. .|+++++++.+++.+++......-...+...|..
T Consensus        37 ~~~~~~i~~~~~--~~~~VLDiGCG~G~~~~~la~~~p~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~  108 (200)
T 3fzg_A           37 NDFYTYVFGNIK--HVSSILDFGCGFNPLALYQWNENEKIIYHAYDIDRAEIAFLSSIIGKLKTTIKYRFLNKE  108 (200)
T ss_dssp             HHHHHHHHHHSC--CCSEEEEETCTTHHHHHHHHCSSCCCEEEEECSCHHHHHHHHHHHHHSCCSSEEEEECCH
T ss_pred             HHHHHHHHHHCC--CCCEEEEECCCCCHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHCCCCEEEEEECHH
T ss_conf             999999995289--998799958867877999998789978999859999999998510232885156651013


No 151
>3cc8_A Putative methyltransferase; NP_977653.1, structural genomics, joint center for structural genomics, JCSG; 1.64A {Bacillus cereus atcc 10987}
Probab=97.96  E-value=6.6e-06  Score=55.71  Aligned_cols=68  Identities=16%  Similarity=0.196  Sum_probs=50.3

Q ss_pred             HHHHHHCCCCCCCEEEEECCCCCHHHHHHHHCCCCEEEEECCCCCCHHHHHHHHHHHHCCCCCCHHHHCCCCHH
Q ss_conf             99999719899987999758988234677502352599842554303688787532200122000000014315
Q gi|254780398|r   37 KKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFE  110 (284)
Q Consensus        37 ~~iv~~~~~~~~~~VlEIGpG~G~LT~~Ll~~~~~~v~aiEiD~~~~~~l~~~~~~~~~~~~ii~~Dal~~d~~  110 (284)
                      ..+.+.+. .++..|||||||.|.+|..|++.++ +|++||+++.+++.+++...    ++.+...|+....++
T Consensus        23 ~~~~~~~~-~~~~~ILDIGcG~G~~~~~l~~~~~-~v~giD~s~~~i~~a~~~~~----~~~~~~~~~~~~~~~   90 (230)
T 3cc8_A           23 PNLLKHIK-KEWKEVLDIGCSSGALGAAIKENGT-RVSGIEAFPEAAEQAKEKLD----HVVLGDIETMDMPYE   90 (230)
T ss_dssp             HHHHTTCC-TTCSEEEEETCTTSHHHHHHHTTTC-EEEEEESSHHHHHHHHTTSS----EEEESCTTTCCCCSC
T ss_pred             HHHHHHCC-CCCCEEEEECCCCCHHHHHHHHCCC-EEEEEECCHHHHHHHHHCCC----EEEEEHHHHHCCCCC
T ss_conf             99997368-5799699951888699999997599-89999672566666541131----233101022138888


No 152
>3frh_A 16S rRNA methylase; methyltransferase domain, helical N-terminal domain, methyltransferase, plasmid, transferase; HET: SAH; 1.20A {Escherichia coli} PDB: 3fri_A* 3b89_A*
Probab=97.94  E-value=1.2e-05  Score=54.11  Aligned_cols=67  Identities=13%  Similarity=0.033  Sum_probs=52.3

Q ss_pred             HCCCCCCCEEEEECCCCCHHHHHHHHCCCCEEEEECCCCCCHHHHHHHHHHHHCCCCCCHHHHCCCCHH
Q ss_conf             719899987999758988234677502352599842554303688787532200122000000014315
Q gi|254780398|r   42 SSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFE  110 (284)
Q Consensus        42 ~~~~~~~~~VlEIGpG~G~LT~~Ll~~~~~~v~aiEiD~~~~~~l~~~~~~~~~~~~ii~~Dal~~d~~  110 (284)
                      .....+...||++|||+|.++..+.. ++ +|+++++++.+++.+++......-++....+|+......
T Consensus       100 ~~~~~~~~~VLDlGCG~G~l~~~~~~-~~-~v~gvD~s~~~l~~ar~~~~~~~~~~~~~~~d~~~~~~~  166 (253)
T 3frh_A          100 IFSAETPRRVLDIACGLNPLALYERG-IA-SVWGCDIHQGLGDVITPFAREKDWDFTFALQDVLCAPPA  166 (253)
T ss_dssp             HTSSCCCSEEEEETCTTTHHHHHHTT-CS-EEEEEESBHHHHHHHHHHHHHTTCEEEEEECCTTTSCCC
T ss_pred             HHCCCCCCEEEEECCCCCHHHHHHCC-CC-EEEEEECCHHHHHHHHHHHHHCCCCCEEEECCHHHCCCC
T ss_conf             84589998599967888899999768-98-389997979999999999998299704885562224577


No 153
>3e23_A Uncharacterized protein RPA2492; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; HET: SAM; 1.60A {Rhodopseudomonas palustris}
Probab=97.93  E-value=2.2e-05  Score=52.46  Aligned_cols=72  Identities=15%  Similarity=0.157  Sum_probs=51.5

Q ss_pred             HHHHHHHHHHCCCCCCCEEEEECCCCCHHHHHHHHCCCCEEEEECCCCCCHHHHHHHHHHHHCCCCCCHHHHCCCCHHHH
Q ss_conf             89999999971989998799975898823467750235259984255430368878753220012200000001431552
Q gi|254780398|r   33 LNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKF  112 (284)
Q Consensus        33 ~~i~~~iv~~~~~~~~~~VlEIGpG~G~LT~~Ll~~~~~~v~aiEiD~~~~~~l~~~~~~~~~~~~ii~~Dal~~d~~~~  112 (284)
                      ...+.++++.  +.++..|||||||.|..+..|++++. +|++||+.+.+++.+++....     .+...++...+..+-
T Consensus        31 ~~~l~~~~~~--l~~~~~VLDvGCG~G~~~~~l~~~g~-~v~gvD~s~~~i~~a~~~~~~-----~~~~~~~~~~~~~~~  102 (211)
T 3e23_A           31 SATLTKFLGE--LPAGAKILELGCGAGYQAEAMLAAGF-DVDATDGSPELAAEASRRLGR-----PVRTMLFHQLDAIDA  102 (211)
T ss_dssp             CHHHHHHHTT--SCTTCEEEESSCTTSHHHHHHHHTTC-EEEEEESCHHHHHHHHHHHTS-----CCEECCGGGCCCCSC
T ss_pred             HHHHHHHHHH--CCCCCEEEEECCCCCHHHHHHHHCCC-CEEEEECCHHHHHHHHHHCCC-----CCEEEEEECCCCCCC
T ss_conf             6999999961--89989899986888699999997599-232341469999999986088-----620112202553223


No 154
>3mcz_A O-methyltransferase; adomet_mtases, S-adenosylmethionine-dependent methyltransfer structural genomics, PSI-2; HET: MSE; 1.90A {Burkholderia thailandensis}
Probab=97.87  E-value=0.0001  Score=48.32  Aligned_cols=93  Identities=11%  Similarity=0.099  Sum_probs=62.2

Q ss_pred             HHHHHHHCCCCCCCEEEEECCCCCHHHHHHHHCCCC-EEEEECCCCCCHHHHHHHHHH--HHCCCCCCHHHHCCCCHHHH
Q ss_conf             999999719899987999758988234677502352-599842554303688787532--20012200000001431552
Q gi|254780398|r   36 LKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGAR-KVIVIEKDQQFFPILKDISSQ--HPNRLEIIQDDALKVDFEKF  112 (284)
Q Consensus        36 ~~~iv~~~~~~~~~~VlEIGpG~G~LT~~Ll~~~~~-~v~aiEiD~~~~~~l~~~~~~--~~~~~~ii~~Dal~~d~~~~  112 (284)
                      ++.+.+..+......|+|||+|.|.++..++++.+. +++.++. +..++..++....  ..++++++.+|+++..... 
T Consensus       168 ~~~l~~~~~~~~~~~vlDvGgG~G~~~~~l~~~~p~~~~~~~Dl-p~~~~~a~~~~~~~~l~~rv~~~~gd~~~~~~~~-  245 (352)
T 3mcz_A          168 VDVVSELGVFARARTVIDLAGGHGTYLAQVLRRHPQLTGQIWDL-PTTRDAARKTIHAHDLGGRVEFFEKNLLDARNFE-  245 (352)
T ss_dssp             HHHHHTCGGGTTCCEEEEETCTTCHHHHHHHHHCTTCEEEEEEC-GGGHHHHHHHHHHTTCGGGEEEEECCTTCGGGGT-
T ss_pred             HHHHHHHCCCCCCCEEEEECCCCCHHHHHHHHHCCEEEEEEEEC-HHHHHHHHHHHHHCCCCCCCEEEECCCCCCCCCC-
T ss_conf             99999713877799899988988799999997598348999601-9999999999986388655257754411134566-


Q ss_pred             CCCCCCEEEEECCCHHHHH
Q ss_conf             1332220112023224678
Q gi|254780398|r  113 FNISSPIRIIANLPYNIGT  131 (284)
Q Consensus       113 ~~~~~~~~vvgNLPYnIss  131 (284)
                       .......+++|+=++.+.
T Consensus       246 -~~~~D~v~~~~vlh~~~d  263 (352)
T 3mcz_A          246 -GGAADVVMLNDCLHYFDA  263 (352)
T ss_dssp             -TCCEEEEEEESCGGGSCH
T ss_pred             -CCCCCEEEECCEEECCCH
T ss_conf             -777636875131203899


No 155
>2b78_A Hypothetical protein SMU.776; structure genomics, methyltransferase, caries, structural genomics, unknown function; 2.00A {Streptococcus mutans} SCOP: b.122.1.9 c.66.1.51
Probab=97.82  E-value=7.5e-05  Score=49.13  Aligned_cols=103  Identities=14%  Similarity=0.098  Sum_probs=75.7

Q ss_pred             CCC--CCCCHHHHHH-HHHHCCCCCCCEEEEECCCCCHHHHHHHHCCCCEEEEECCCCCCHHHHHHHHHHHH---CCCCC
Q ss_conf             841--1239899999-99971989998799975898823467750235259984255430368878753220---01220
Q gi|254780398|r   26 GQN--FLLDLNILKK-IAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQHP---NRLEI   99 (284)
Q Consensus        26 GQn--FL~d~~i~~~-iv~~~~~~~~~~VlEIGpG~G~LT~~Ll~~~~~~v~aiEiD~~~~~~l~~~~~~~~---~~~~i   99 (284)
                      ||+  |-.|.+-.+. +++.  ..++..||++.+|+|..+...+..+|.+|++||+++..++.+++....+.   .++++
T Consensus       190 gqkTG~flDqR~nR~~l~~~--~~~g~rVLDlfs~tGgfsl~aa~~gA~~V~~vD~s~~a~~~a~~N~~~N~l~~~~~~~  267 (385)
T 2b78_A          190 GLMTGIFLDQRQVRNELING--SAAGKTVLNLFSYTAAFSVAAAMGGAMATTSVDLAKRSRALSLAHFEANHLDMANHQL  267 (385)
T ss_dssp             SSCCSSCGGGHHHHHHHHHT--TTBTCEEEEETCTTTHHHHHHHHTTBSEEEEEESCTTHHHHHHHHHHHTTCCCTTEEE
T ss_pred             CCCCCCCHHHHHHHHHHHHH--HCCCCCEEEECCCCCHHHHHHHHCCCCEEEECCCCHHHHHHHHHHHHHHCCCCCCEEE
T ss_conf             25568877788879999998--5599916863676878999998779958885267699999999989984899764477


Q ss_pred             CHHHHCCCCHHHHCCCC-CCEEEEECCCHHHHH
Q ss_conf             00000014315521332-220112023224678
Q gi|254780398|r  100 IQDDALKVDFEKFFNIS-SPIRIIANLPYNIGT  131 (284)
Q Consensus       100 i~~Dal~~d~~~~~~~~-~~~~vvgNLPYnIss  131 (284)
                      +.+|+.++ +......+ ..-.||-+.|+...+
T Consensus       268 ~~~D~~~~-L~~~~~~~~~fD~IilDPP~f~~~  299 (385)
T 2b78_A          268 VVMDVFDY-FKYARRHHLTYDIIIIDPPSFARN  299 (385)
T ss_dssp             EESCHHHH-HHHHHHTTCCEEEEEECCCCC---
T ss_pred             EECCHHHH-HHHHHHCCCCCCEEEECCCCCCCC
T ss_conf             72669999-999986489888899898633588


No 156
>2r3s_A Uncharacterized protein; methyltransferase domain, structural genomics, joint center structural genomics, JCSG; HET: MSE; 2.15A {Nostoc punctiforme pcc 73102}
Probab=97.81  E-value=0.00011  Score=48.20  Aligned_cols=93  Identities=14%  Similarity=0.210  Sum_probs=61.4

Q ss_pred             HHHHHHHHCCCC--CCCEEEEECCCCCHHHHHHHHCCCC-EEEEECCCCCCHHHHHHHHHH--HHCCCCCCHHHHCCCCH
Q ss_conf             999999971989--9987999758988234677502352-599842554303688787532--20012200000001431
Q gi|254780398|r   35 ILKKIAESSGSL--DGITVIEIGAGPGNLTQMLLTLGAR-KVIVIEKDQQFFPILKDISSQ--HPNRLEIIQDDALKVDF  109 (284)
Q Consensus        35 i~~~iv~~~~~~--~~~~VlEIGpG~G~LT~~Ll~~~~~-~v~aiEiD~~~~~~l~~~~~~--~~~~~~ii~~Dal~~d~  109 (284)
                      ....+++.++..  .+..|||||+|.|..+..++++.+. +++.+++ +..++..++....  ..++++++.+|+.+.++
T Consensus       151 ~~~~~~~~~~~~~~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~Dl-p~~~~~a~~~~~~~~l~~rv~~~~~d~~~~~~  229 (335)
T 2r3s_A          151 PAQLIAQLVNENKIEPLKVLDISASHGLFGIAVAQHNPNAEIFGVDW-ASVLEVAKENARIQGVASRYHTIAGSAFEVDY  229 (335)
T ss_dssp             HHHHHHHHHTC--CCCSEEEEETCTTCHHHHHHHHHCTTCEEEEEEC-HHHHHHHHHHHHHHTCGGGEEEEESCTTTSCC
T ss_pred             HHHHHHHHHHHCCCCCCEEEEECCCCCHHHHHHHHHCCCCCEEEECC-HHHHHHHHHHHHHHCCCEEEEECCCCHHHCCC
T ss_conf             89999987110068898799979996299999998589877377446-78889999878860874356532453320554


Q ss_pred             HHHCCCCCCEEEEECCCHHHHHH
Q ss_conf             55213322201120232246788
Q gi|254780398|r  110 EKFFNISSPIRIIANLPYNIGTR  132 (284)
Q Consensus       110 ~~~~~~~~~~~vvgNLPYnIss~  132 (284)
                      ++-    ....+.+|+=++.+-+
T Consensus       230 ~~~----~D~v~~~~vlh~~~~~  248 (335)
T 2r3s_A          230 GND----YDLVLLPNFLHHFDVA  248 (335)
T ss_dssp             CSC----EEEEEEESCGGGSCHH
T ss_pred             CCC----HHHHHHHHHHHHCCHH
T ss_conf             331----3588863004432456


No 157
>2qfm_A Spermine synthase; spermidine aminopropyltransferase, SPMSY, structural genomics, structural genomics consortium, SGC; HET: SPD MTA; 1.80A {Homo sapiens} PDB: 3c6k_A* 3c6m_A*
Probab=97.79  E-value=3.2e-05  Score=51.46  Aligned_cols=62  Identities=21%  Similarity=0.362  Sum_probs=51.8

Q ss_pred             CCCCEEEEECCCCCHHHHHHHHCCCCEEEEECCCCCCHHHHHHHHHHH---------HCCCCCCHHHHCCC
Q ss_conf             999879997589882346775023525998425543036887875322---------00122000000014
Q gi|254780398|r   46 LDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQH---------PNRLEIIQDDALKV  107 (284)
Q Consensus        46 ~~~~~VlEIGpG~G~LT~~Ll~~~~~~v~aiEiD~~~~~~l~~~~~~~---------~~~~~ii~~Dal~~  107 (284)
                      .+...||-||.|.|++.+++++.++.+|++||+|+..++..++-+...         ..+++++.+|+.++
T Consensus       187 ~~pk~VLIIGGGdG~~~revlk~~~~~V~~VEID~~Vve~akk~~~~~~~~~~d~~r~~rv~iii~Da~~~  257 (364)
T 2qfm_A          187 YTGKDVLILGGGDGGILCEIVKLKPKMVTMVEIDQMVIDGCKKYMRKTCGDVLDNLKGDCYQVLIEDCIPV  257 (364)
T ss_dssp             CTTCEEEEEECTTCHHHHHHHTTCCSEEEEEESCHHHHHHHHHHCCC----CCSSSEETTEEEEESCHHHH
T ss_pred             CCCCEEEEEECCCHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHHHHHHHHCCCCCCCCEEHHHHHHH
T ss_conf             89885999969943999999861784289971038999999986565400121084423443355779999


No 158
>2avd_A Catechol-O-methyltransferase; structural genomics, structural genomics consortium, SGC; HET: SAM; 1.70A {Homo sapiens} SCOP: c.66.1.1
Probab=97.79  E-value=3.8e-05  Score=50.99  Aligned_cols=79  Identities=14%  Similarity=0.152  Sum_probs=61.7

Q ss_pred             CCCCHHHHHHHHHHCCCCCCCEEEEECCCCCHHHHHHHHCCC--CEEEEECCCCCCHHHHHHHHHH--HHCCCCCCHHHH
Q ss_conf             123989999999971989998799975898823467750235--2599842554303688787532--200122000000
Q gi|254780398|r   29 FLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGA--RKVIVIEKDQQFFPILKDISSQ--HPNRLEIIQDDA  104 (284)
Q Consensus        29 FL~d~~i~~~iv~~~~~~~~~~VlEIGpG~G~LT~~Ll~~~~--~~v~aiEiD~~~~~~l~~~~~~--~~~~~~ii~~Da  104 (284)
                      -.+.+....-+.-.+......+|||||+|.|.=|..++..-+  .+|+++|+|+..++.+++.+..  ..++++++.|||
T Consensus        51 ~~i~p~~g~lL~~l~~~~~~k~vLEiGt~~GySal~lA~al~~~g~v~tie~~~~~~~~Ar~~~~~ag~~~~i~~~~g~a  130 (229)
T 2avd_A           51 SMMTCEQAQLLANLARLIQAKKALDLGTFTGYSALALALALPADGRVVTCEVDAQPPELGRPLWRQAEAEHKIDLRLKPA  130 (229)
T ss_dssp             GSCCHHHHHHHHHHHHHTTCCEEEEECCTTSHHHHHHHTTSCTTCEEEEEESCSHHHHHHHHHHHHTTCTTTEEEEESCH
T ss_pred             CCCCHHHHHHHHHHHHHHCCCEEEEEECCCCHHHHHHHHCCCCCCEEEEEECCHHHHHHHHHHHHHCCCCCCEEEEEECH
T ss_conf             66499999999999986499789998444689999999437999789999574659999999999769988569999500


Q ss_pred             CCC
Q ss_conf             014
Q gi|254780398|r  105 LKV  107 (284)
Q Consensus       105 l~~  107 (284)
                      ++.
T Consensus       131 ~e~  133 (229)
T 2avd_A          131 LET  133 (229)
T ss_dssp             HHH
T ss_pred             HHH
T ss_conf             456


No 159
>1sui_A Caffeoyl-COA O-methyltransferase; rossmann fold, protein-cofactor-substrate complex; HET: SAH FRE; 2.70A {Medicago sativa} SCOP: c.66.1.1 PDB: 1sus_A*
Probab=97.78  E-value=3.7e-05  Score=51.07  Aligned_cols=85  Identities=11%  Similarity=0.085  Sum_probs=61.3

Q ss_pred             CCCCCCC-CCHHHHHHHHHHCCCCCCCEEEEECCCCCHHHHHHHHCCC--CEEEEECCCCCCHHHHHHHHHH--HHCCCC
Q ss_conf             6584112-3989999999971989998799975898823467750235--2599842554303688787532--200122
Q gi|254780398|r   24 YMGQNFL-LDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGA--RKVIVIEKDQQFFPILKDISSQ--HPNRLE   98 (284)
Q Consensus        24 ~lGQnFL-~d~~i~~~iv~~~~~~~~~~VlEIGpG~G~LT~~Ll~~~~--~~v~aiEiD~~~~~~l~~~~~~--~~~~~~   98 (284)
                      ++++.++ +.+....-+.-.+.......|||||.+.|.=|..++..-+  .+++++|+|+..+..+++.+..  ..++++
T Consensus        55 ~~~~~~m~i~~~~g~~L~~L~~~~~ak~iLEIGT~~GySal~~a~al~~~g~l~tie~~~~~~~~Ar~~~~~ag~~~kI~  134 (247)
T 1sui_A           55 KHPWNIMTTSADEGQFLSMLLKLINAKNTMEIGVYTGYSLLATALAIPEDGKILAMDINKENYELGLPVIKKAGVDHKID  134 (247)
T ss_dssp             TSTTGGGSCCHHHHHHHHHHHHHTTCCEEEEECCGGGHHHHHHHHHSCTTCEEEEEESCCHHHHHHHHHHHHTTCGGGEE
T ss_pred             HCCCCCCCCCHHHHHHHHHHHHHHCCCEEEEEECCCCHHHHHHHHHCCCCCEEEEEECCHHHHHHHHHHHHHHHCCCCEE
T ss_conf             67754467599999999999986499779996321589999999858546369998517787899999998620145058


Q ss_pred             CCHHHHCCCC
Q ss_conf             0000000143
Q gi|254780398|r   99 IIQDDALKVD  108 (284)
Q Consensus        99 ii~~Dal~~d  108 (284)
                      ++.|||+++-
T Consensus       135 ~~~g~A~e~L  144 (247)
T 1sui_A          135 FREGPALPVL  144 (247)
T ss_dssp             EEESCHHHHH
T ss_pred             EEECCHHHHH
T ss_conf             9944289999


No 160
>3dxy_A TRNA (guanine-N(7)-)-methyltransferase; rossmann fold methyltransferase, tRNA modification, S-adenosyl-L-methionine, tRNA processing; HET: SAM; 1.50A {Escherichia coli K12} PDB: 3dxx_A* 3dxz_A*
Probab=97.78  E-value=4.1e-05  Score=50.74  Aligned_cols=106  Identities=18%  Similarity=0.158  Sum_probs=69.3

Q ss_pred             HHHHHHHHHCCCCCCCCCCCCCCCCHHHHHHHHHHCCCCCCCEEEEECCCCCHHHHHHHHCCCC-EEEEECCCCCCHHHH
Q ss_conf             4799999981898433658411239899999999719899987999758988234677502352-599842554303688
Q gi|254780398|r    8 HSLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGAR-KVIVIEKDQQFFPIL   86 (284)
Q Consensus         8 ~~i~~ll~~~~~~p~k~lGQnFL~d~~i~~~iv~~~~~~~~~~VlEIGpG~G~LT~~Ll~~~~~-~v~aiEiD~~~~~~l   86 (284)
                      ..++++..+|++-..+.     .+|-.   .   .-+ .++..+||||+|.|.-|..++++.+. .+++||+-...+..+
T Consensus         7 ~~l~~~~p~~~~~~~~~-----~~d~~---~---lF~-~~~pliLEIGcG~G~~l~~~A~~~P~~~~iGiEi~~~~v~~a   74 (218)
T 3dxy_A            7 HALENYWPVMGVEFSED-----MLDFP---A---LFG-REAPVTLEIGFGMGASLVAMAKDRPEQDFLGIEVHSPGVGAC   74 (218)
T ss_dssp             CHHHHHHHHHBCCCCSS-----CCCHH---H---HHS-SCCCEEEEESCTTCHHHHHHHHHCTTSEEEEECSCHHHHHHH
T ss_pred             HHHHHHCHHCCCCCCCC-----CCCHH---H---HCC-CCCCEEEEECCCCCHHHHHHHHHCCCCCEEEEEEECCCEEEE
T ss_conf             99997470126478878-----76999---9---729-999539997268889999999968999889999723505530


Q ss_pred             HHHHHHH-HCCCCCCHHHHCCCCHHHHCCCCCCEEEEECCC
Q ss_conf             7875322-001220000000143155213322201120232
Q gi|254780398|r   87 KDISSQH-PNRLEIIQDDALKVDFEKFFNISSPIRIIANLP  126 (284)
Q Consensus        87 ~~~~~~~-~~~~~ii~~Dal~~d~~~~~~~~~~~~vvgNLP  126 (284)
                      .+..... -.++.++++|+.++-. .....++--.|.-|-|
T Consensus        75 ~~~~~~~~l~Ni~~~~~da~~~l~-~~~~~~s~d~I~i~FP  114 (218)
T 3dxy_A           75 LASAHEEGLSNLRVMCHDAVEVLH-KMIPDNSLRMVQLFFP  114 (218)
T ss_dssp             HHHHHHTTCSSEEEECSCHHHHHH-HHSCTTCEEEEEEESC
T ss_pred             HHHCCHHHHCCCCEECCCHHHHHH-HHCCCCCCCCCEECCC
T ss_conf             321201210455056453899998-7524564544323168


No 161
>2gs9_A Hypothetical protein TT1324; methyl transferase, structural genomics, NPPSFA; HET: SAH; 2.60A {Thermus thermophilus HB8}
Probab=97.77  E-value=2.2e-05  Score=52.50  Aligned_cols=59  Identities=15%  Similarity=0.229  Sum_probs=47.7

Q ss_pred             CCCCCEEEEECCCCCHHHHHHHHCCCCEEEEECCCCCCHHHHHHHHHHHHCCCCCCHHHHCCCCHH
Q ss_conf             899987999758988234677502352599842554303688787532200122000000014315
Q gi|254780398|r   45 SLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFE  110 (284)
Q Consensus        45 ~~~~~~VlEIGpG~G~LT~~Ll~~~~~~v~aiEiD~~~~~~l~~~~~~~~~~~~ii~~Dal~~d~~  110 (284)
                      +.++..|||||||+|.++..+.  . .+|+++|+++.+++.+++...    ++.++++|+..++++
T Consensus        34 l~~g~~iLDiGCG~G~~~~~l~--~-~~v~g~D~s~~~l~~A~~~~~----~~~~~~~~~~~l~~~   92 (211)
T 2gs9_A           34 LPPGESLLEVGAGTGYWLRRLP--Y-PQKVGVEPSEAMLAVGRRRAP----EATWVRAWGEALPFP   92 (211)
T ss_dssp             CCCCSEEEEETCTTCHHHHHCC--C-SEEEEECCCHHHHHHHHHHCT----TSEEECCCTTSCCSC
T ss_pred             CCCCCEEEEECCCCHHHHHHCC--C-CCEEEEECCHHHHHHHHHCCC----CCEEEECCHHCCCCC
T ss_conf             7999989998998609999737--6-868998389999998763366----520343423117887


No 162
>3hvi_A Catechol O-methyltransferase; neurotransmitter degradation, alternative initiation, catecholamine metabolism, cell membrane, cytoplasm; HET: 619; 1.20A {Rattus norvegicus} PDB: 1jr4_A* 1vid_A* 1h1d_A* 2cl5_A* 3hvh_A* 3hvj_A* 3hvk_A* 2zlb_A 2zth_A* 2zvj_A* 3a7d_A* 3bwm_A* 3bwy_A* 3a7e_A*
Probab=97.76  E-value=2.2e-05  Score=52.46  Aligned_cols=77  Identities=12%  Similarity=0.159  Sum_probs=57.1

Q ss_pred             CCHHHHHHHHHHCCCCCCCEEEEECCCCCHHHHHHHHCC--CCEEEEECCCCCCHHHHHHHHHH--HHCCCCCCHHHHCC
Q ss_conf             398999999997198999879997589882346775023--52599842554303688787532--20012200000001
Q gi|254780398|r   31 LDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLG--ARKVIVIEKDQQFFPILKDISSQ--HPNRLEIIQDDALK  106 (284)
Q Consensus        31 ~d~~i~~~iv~~~~~~~~~~VlEIGpG~G~LT~~Ll~~~--~~~v~aiEiD~~~~~~l~~~~~~--~~~~~~ii~~Dal~  106 (284)
                      +.+....-+-..+...+...|||||+|.|.-|..+++.-  ..+|+++|+++..++.+++.+..  ..++++++.||+.+
T Consensus        42 i~~~~g~~L~~lv~~~kpk~iLEiGt~~G~Stl~la~al~~~g~v~~id~~~~~~~~ar~~~~~agl~~~I~l~~gd~~e  121 (221)
T 3hvi_A           42 VGDAKGQIMDAVIREYSPSLVLELGAYCGYSAVRMARLLQPGARLLTMEMNPDYAAITQQMLNFAGLQDKVTILNGASQD  121 (221)
T ss_dssp             CHHHHHHHHHHHHHHHCCSEEEEECCTTSHHHHHHHTTCCTTCEEEEECCCHHHHHHHHHHHHHHTCTTTEEEECSCHHH
T ss_pred             CCHHHHHHHHHHHHHCCCCEEEEEECCCHHHHHHHHHHCCCCCEEEEEECCCHHHHHHHHHHHHCCCCCCEEEEECCHHH
T ss_conf             08999999999998619999999714742999999985799978999988841258999999975997741588377999


Q ss_pred             C
Q ss_conf             4
Q gi|254780398|r  107 V  107 (284)
Q Consensus       107 ~  107 (284)
                      +
T Consensus       122 ~  122 (221)
T 3hvi_A          122 L  122 (221)
T ss_dssp             H
T ss_pred             H
T ss_conf             9


No 163
>2i62_A Nicotinamide N-methyltransferase; structural genomics, structural genomics consortium, SGC; HET: SAH; 1.80A {Mus musculus} PDB: 2iip_A*
Probab=97.74  E-value=1.9e-05  Score=52.82  Aligned_cols=58  Identities=21%  Similarity=0.297  Sum_probs=45.9

Q ss_pred             CCCCCCCEEEEECCCCCHHHHHHHHCCCCEEEEECCCCCCHHHHHHHHHHHHCCCCCC
Q ss_conf             1989998799975898823467750235259984255430368878753220012200
Q gi|254780398|r   43 SGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQHPNRLEII  100 (284)
Q Consensus        43 ~~~~~~~~VlEIGpG~G~LT~~Ll~~~~~~v~aiEiD~~~~~~l~~~~~~~~~~~~ii  100 (284)
                      .+..+++.|||||||+|.++..+++.+..+|+++++.+.+++.+++........+...
T Consensus        52 ~~~~~g~~vLDlGCG~G~~~~~l~~~~~~~V~giD~S~~~i~~a~~~~~~~~~~~~~~  109 (265)
T 2i62_A           52 LGAVKGELLIDIGSGPTIYQLLSACESFTEIIVSDYTDQNLWELQKWLKKEPGAFDWS  109 (265)
T ss_dssp             SSSCCEEEEEEESCTTCCGGGTTGGGTEEEEEEEESCHHHHHHHHHHHTTCTTCCCCH
T ss_pred             CCCCCCCEEEEECCCCCHHHHHHHHHCCCEEEEECCCHHHHHHHHHHHHHCCCCCCHH
T ss_conf             8888898899967877676999997219989995699999999999987547762213


No 164
>3ll7_A Putative methyltransferase; methytransferase, structural genomics, MCSG, PSI-2, protein structure initiative; HET: MSE; 1.80A {Porphyromonas gingivalis}
Probab=97.74  E-value=3.6e-05  Score=51.10  Aligned_cols=81  Identities=15%  Similarity=0.137  Sum_probs=59.2

Q ss_pred             CCCCCEEEEECCCCCHHHHHHHHCCCCEEEEECCCCCCHHHHHHHHHHH---HCCCCCCHHHHCCCCHHHHCCCCCCEEE
Q ss_conf             8999879997589882346775023525998425543036887875322---0012200000001431552133222011
Q gi|254780398|r   45 SLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQH---PNRLEIIQDDALKVDFEKFFNISSPIRI  121 (284)
Q Consensus        45 ~~~~~~VlEIGpG~G~LT~~Ll~~~~~~v~aiEiD~~~~~~l~~~~~~~---~~~~~ii~~Dal~~d~~~~~~~~~~~~v  121 (284)
                      +.+++.|+++|+|.|.-+.++++.+ .+|++||+|+..+..++.++...   ..++++++||++++ +..... ...-.|
T Consensus        91 ~~~g~~v~Dl~cG~G~da~alA~~~-~~V~~vE~d~~~~~~A~~N~~~~~~~~~~v~~~~~D~~~~-l~~~~~-~~~d~v  167 (410)
T 3ll7_A           91 IREGTKVVDLTGGLGIDFIALMSKA-SQGIYIERNDETAVAARHNIPLLLNEGKDVNILTGDFKEY-LPLIKT-FHPDYI  167 (410)
T ss_dssp             SCTTCEEEESSCSSSHHHHHHHTTC-SEEEEEESCHHHHHHHHHHHHHHSCTTCEEEEEESCGGGS-HHHHHH-HCCSEE
T ss_pred             CCCCCEEEECCCCHHHHHHHHHHCC-CEEEEEECCHHHHHHHHHHHHHHHCCCCCEEEEECCHHHH-HHHCCC-CCCCEE
T ss_conf             6799989987886679999999639-9899995899999999984898726788269996668888-753467-778889


Q ss_pred             EECCCHH
Q ss_conf             2023224
Q gi|254780398|r  122 IANLPYN  128 (284)
Q Consensus       122 vgNLPYn  128 (284)
                      +.+.|.-
T Consensus       168 ~~DPaRR  174 (410)
T 3ll7_A          168 YVDPARR  174 (410)
T ss_dssp             EECCEEC
T ss_pred             EECCCCC
T ss_conf             9766233


No 165
>3bt7_A TRNA (uracil-5-)-methyltransferase; methyluridine, methyltransferase, TRMA, RUMT; HET: 5MU; 2.43A {Escherichia coli}
Probab=97.73  E-value=5.2e-05  Score=50.13  Aligned_cols=156  Identities=13%  Similarity=0.190  Sum_probs=90.8

Q ss_pred             CCHHHHHHHHHHCCCCCCCEEEEECCCCCHHHHHHHHCCCCEEEEECCCCCCHHHHHHHHHHHH-CCCCCCHHHHCCCC-
Q ss_conf             3989999999971989998799975898823467750235259984255430368878753220-01220000000143-
Q gi|254780398|r   31 LDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQHP-NRLEIIQDDALKVD-  108 (284)
Q Consensus        31 ~d~~i~~~iv~~~~~~~~~~VlEIGpG~G~LT~~Ll~~~~~~v~aiEiD~~~~~~l~~~~~~~~-~~~~ii~~Dal~~d-  108 (284)
                      ..+.+.+.+++.+... +..|+|.-+|.|.+|..|++. +++|++||+++..+..+++....+. .+...+.+|+-++- 
T Consensus       198 ~~~~l~~~v~~~~~~~-~~~vlDLycG~Gt~sl~La~~-~~~V~gvE~~~~av~~A~~Na~~n~i~N~~f~~~~a~~~~~  275 (369)
T 3bt7_A          198 MNIQMLEWALDVTKGS-KGDLLELYCGNGNFSLALARN-FDRVLATEIAKPSVAAAQYNIAANHIDNVQIIRMAAEEFTQ  275 (369)
T ss_dssp             HHHHHHHHHHHHTTTC-CSEEEEESCTTSHHHHHHGGG-SSEEEEECCCHHHHHHHHHHHHHTTCCSEEEECCCSHHHHH
T ss_pred             HHHHHHHHHHHHHCCC-CCEEEECCCCCCHHHHHHHHC-CCEEEEEEECHHHHHHHHHHHHHCCCCCEEEEECCHHHHHH
T ss_conf             9999999999871567-764887378965889998730-85788999702678999999997598871899725999998


Q ss_pred             -------HHHH----CCCCCCEEEEECCCHHHHHHHHHHHHHHHCCCCCCCHHHHEEEHHHHHHHHHCCCH--HHHHHHH
Q ss_conf             -------1552----13322201120232246788999998520100000011020334478875301231--2332345
Q gi|254780398|r  109 -------FEKF----FNISSPIRIIANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNS--PHYGRLS  175 (284)
Q Consensus       109 -------~~~~----~~~~~~~~vvgNLPYnIss~Il~~ll~~~~~~~~~~~~vlmvQkEvA~Rl~a~pg~--k~Yg~LS  175 (284)
                             +..+    .....+-.||-+-|=.=-.+-+..++..  .+    ++ ++|        ...|.|  +|   |.
T Consensus       276 ~~~~~~~~~~~~~~~~~~~~~d~vilDPPR~Gl~~~v~~~~~~--~~----~i-vYV--------SCnP~TlarD---l~  337 (369)
T 3bt7_A          276 AMNGVREFNRLQGIDLKSYQCETIFVDPPRSGLDSETEKMVQA--YP----RI-LYI--------SCNPETLCKN---LE  337 (369)
T ss_dssp             HHSSCCCCTTGGGSCGGGCCEEEEEECCCTTCCCHHHHHHHTT--SS----EE-EEE--------ESCHHHHHHH---HH
T ss_pred             HHHHHHHHHHHHCCCHHCCCCCEEEECCCCCCCHHHHHHHHHC--CC----CE-EEE--------ECCHHHHHHH---HH
T ss_conf             8763145665302310126587799897962518999999856--99----59-999--------0898999999---99


Q ss_pred             HHHCCCCCEEEECCCCCCEECCCC-CCCEEEEEECCC
Q ss_conf             432013320120001100001057-875788730125
Q gi|254780398|r  176 VLTGWRTKATMMFDISPHVFFPSP-KVTSTVIHFIPH  211 (284)
Q Consensus       176 v~~q~~~~v~~~~~V~~~~F~P~P-kVdS~vi~l~pk  211 (284)
                      .+.+ -|   .+-++-+-.+||.. .|.+ |+.|++|
T Consensus       338 ~L~~-gy---~l~~~~~~D~FP~T~HvE~-v~~l~rk  369 (369)
T 3bt7_A          338 TLSQ-TH---KVERLALFDQFPYTHHMQC-GVLLTAK  369 (369)
T ss_dssp             HHHH-HE---EEEEEEEECCSTTSSCCEE-EEEEEEC
T ss_pred             HHHC-CC---EEEEEEEEECCCCCCEEEE-EEEEECC
T ss_conf             9854-85---6879999712899980888-9999639


No 166
>2gb4_A Thiopurine S-methyltransferase; 18204406, thiopurine methyltransferase, structural genomics, PSI, protein structure initiative; HET: SAH; 1.25A {Mus musculus} PDB: 3bgi_A* 3bgd_A* 2bzg_A* 2h11_A*
Probab=97.71  E-value=7.9e-05  Score=49.01  Aligned_cols=79  Identities=9%  Similarity=-0.016  Sum_probs=63.3

Q ss_pred             CCHHHHHHHHHHCCCCCCCEEEEECCCCCHHHHHHHHCCCCEEEEECCCCCCHHHHHHHHHH------------------
Q ss_conf             39899999999719899987999758988234677502352599842554303688787532------------------
Q gi|254780398|r   31 LDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQ------------------   92 (284)
Q Consensus        31 ~d~~i~~~iv~~~~~~~~~~VlEIGpG~G~LT~~Ll~~~~~~v~aiEiD~~~~~~l~~~~~~------------------   92 (284)
                      +++.+.+.+-+.++..++..||++|||.|.-...|+++|. +|++||+.+..++.+++....                  
T Consensus        52 ~~p~L~~~~~~~~~~~~~~rvL~pgCG~G~da~~LA~~G~-~V~gvD~S~~Ai~~a~~~~~~~~~~~~~~~~~~~~~~~~  130 (252)
T 2gb4_A           52 GHQLLKKHLDTFLKGQSGLRVFFPLCGKAIEMKWFADRGH-TVVGVEISEIGIREFFAEQNLSYTEEPLAEIAGAKVFKS  130 (252)
T ss_dssp             CCHHHHHHHHHHHTTCCSCEEEETTCTTCTHHHHHHHTTC-EEEEECSCHHHHHHHHHHTTCCEEEEECTTSTTCEEEEE
T ss_pred             CCHHHHHHHHHHCCCCCCCEEEEECCCCHHHHHHHHHCCC-EEEEECCCHHHHHHHHHHCCCCCCCCCCCCCCCCCEEEC
T ss_conf             9989999999860889999899989878088999984898-489981629999999987545543122210036420221


Q ss_pred             HHCCCCCCHHHHCCCCHH
Q ss_conf             200122000000014315
Q gi|254780398|r   93 HPNRLEIIQDDALKVDFE  110 (284)
Q Consensus        93 ~~~~~~ii~~Dal~~d~~  110 (284)
                      ...+++++++|+...+..
T Consensus       131 ~~~~i~~~~~D~f~~~~~  148 (252)
T 2gb4_A          131 SSGSISLYCCSIFDLPRA  148 (252)
T ss_dssp             TTSSEEEEESCTTTGGGG
T ss_pred             CCCCEEEEECCHHHCCCC
T ss_conf             477368998543320211


No 167
>3opn_A Putative hemolysin; structural genomics, PSI-2, protein structure initiative, NE SGX research center for structural genomics, nysgxrc; 2.05A {Lactococcus lactis subsp}
Probab=97.68  E-value=0.00015  Score=47.25  Aligned_cols=186  Identities=14%  Similarity=0.191  Sum_probs=96.0

Q ss_pred             HHHHHHCCC-CCCCEEEEECCCCCHHHHHHHHCCCCEEEEECCCCCCHHHHHHHHHHHHCCCCCCHH-HHCCCCHHHHCC
Q ss_conf             999997198-999879997589882346775023525998425543036887875322001220000-000143155213
Q gi|254780398|r   37 KKIAESSGS-LDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQD-DALKVDFEKFFN  114 (284)
Q Consensus        37 ~~iv~~~~~-~~~~~VlEIGpG~G~LT~~Ll~~~~~~v~aiEiD~~~~~~l~~~~~~~~~~~~ii~~-Dal~~d~~~~~~  114 (284)
                      ....+..++ .++..+|+||+.+|..|..|++.+|++|+||+........   .....+ ++....+ |+-.+...++..
T Consensus        26 ~~al~~f~i~~~gk~~lDiGaStGGFTd~lLq~GA~~V~aVDVG~~qL~~---~lr~d~-rV~~~E~~n~R~~~~~~~~~  101 (232)
T 3opn_A           26 EKALKEFHLEINGKTCLDIGSSTGGFTDVMLQNGAKLVYALDVGTNQLAW---KIRSDE-RVVVMEQFNFRNAVLADFEQ  101 (232)
T ss_dssp             HHHHHHTTCCCTTCEEEEETCTTSHHHHHHHHTTCSEEEEECSSCCCCCH---HHHTCT-TEEEECSCCGGGCCGGGCCS
T ss_pred             HHHHHHCCCCCCCCEEEECCCCCCHHHHHHHHCCCCEEEEEECCCHHHHH---HHHCCC-CCCCHHHHCCCCCCHHHCCC
T ss_conf             99999779986899899858898589999998098789999437034307---774398-70320210144553333046


Q ss_pred             CCCCEEEEECCCHHHHHHHHHHHHHHHCCCCCCCHHHHEE--EHHHHHHHHHCCC---HHHH-H-HHHHHHCCCCCEEEE
Q ss_conf             3222011202322467889999985201000000110203--3447887530123---1233-2-345432013320120
Q gi|254780398|r  115 ISSPIRIIANLPYNIGTRLLFNWISADTWPPFWESLTLLF--QKEVGERITAQKN---SPHY-G-RLSVLTGWRTKATMM  187 (284)
Q Consensus       115 ~~~~~~vvgNLPYnIss~Il~~ll~~~~~~~~~~~~vlmv--QkEvA~Rl~a~pg---~k~Y-g-~LSv~~q~~~~v~~~  187 (284)
                       +.+-.++.-+-|--.+.++-.+..... +  -..+++++  |-|++...+.+-|   ++.. . .+.-+..++.  ..-
T Consensus       102 -~~~Dlvv~DvSFISl~~vlp~~~~~l~-~--~~~~v~LiKPQFE~g~~~v~k~GvV~d~~~~~~~i~~v~~~~~--~~g  175 (232)
T 3opn_A          102 -GRPSFTSIDVSFISLDLILPPLYEILE-K--NGEVAALIKPQFEAGREQVGKNGIIRDPKVHQMTIEKVLKTAT--QLG  175 (232)
T ss_dssp             -CCCSEEEECCSSSCGGGTHHHHHHHSC-T--TCEEEEEECHHHHSCHHHHC-CCCCCCHHHHHHHHHHHHHHHH--HHT
T ss_pred             -CCCCEEEECCCHHHHHHHHHHHHHHHC-C--CCEEEEEECCCCHHCHHHHCCCCEECCHHHHHHHHHHHHHHHH--HCC
T ss_conf             -888789970651769999999999826-8--9889999764001134541669857899999999999999998--689


Q ss_pred             CCCCCCEECCCCCCCE--E-EEEECCCCCCCCCCHHHHHHHHHHHHCC
Q ss_conf             0011000010578757--8-8730125885534767899999999727
Q gi|254780398|r  188 FDISPHVFFPSPKVTS--T-VIHFIPHLNPIPCCLESLKKITQEAFGK  232 (284)
Q Consensus       188 ~~V~~~~F~P~PkVdS--~-vi~l~pk~~~~~~~~~~~~~~~~~~F~~  232 (284)
                      +.+-...-+|.+.=+.  - ++.+.+...........+..+++.+...
T Consensus       176 ~~v~~~~~SpI~G~~GN~Eyl~~~~k~~~~~~~~~~~i~~~V~~a~~~  223 (232)
T 3opn_A          176 FSVKGLTFSPIKGGAGNVEFLVHLLKDGKAEIAQQVNIESVLQKESEE  223 (232)
T ss_dssp             EEEEEEEECSSCBTTTBCCEEEEEEESSCCCBCTTCCHHHHHHHHHC-
T ss_pred             CEEEEEEECCCCCCCCCHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHH
T ss_conf             978589978899988379889886116788886164799999999998


No 168
>3dp7_A SAM-dependent methyltransferase; structural genomics, protein structure initiative, NEW YORK structural genomix research, nysgxrc; 2.33A {Bacteroides vulgatus atcc 8482}
Probab=97.66  E-value=0.00013  Score=47.68  Aligned_cols=93  Identities=13%  Similarity=0.149  Sum_probs=63.0

Q ss_pred             HHHHHHCCCCCCCEEEEECCCCCHHHHHHHHCCCC-EEEEECCCCCCHHHHHHHHH--HHHCCCCCCHHHHCCCCHHHHC
Q ss_conf             99999719899987999758988234677502352-59984255430368878753--2200122000000014315521
Q gi|254780398|r   37 KKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGAR-KVIVIEKDQQFFPILKDISS--QHPNRLEIIQDDALKVDFEKFF  113 (284)
Q Consensus        37 ~~iv~~~~~~~~~~VlEIGpG~G~LT~~Ll~~~~~-~v~aiEiD~~~~~~l~~~~~--~~~~~~~ii~~Dal~~d~~~~~  113 (284)
                      ..+.+.++......||+||+|+|..+..++++.+. +++.++.... ++..++...  ...++++++.+|+.+.+++.  
T Consensus       169 ~~~~~~~~~~~~~~vLDiG~G~G~~~~~la~~~p~~~~~~~d~~~~-~~~~~~~~~~~~~~~rv~~~~~d~~~~~~~~--  245 (363)
T 3dp7_A          169 GKALEIVFSHHPKRLLDIGGNTGKWATQCVQYNKEVEVTIVDLPQQ-LEMMRKQTAGLSGSERIHGHGANLLDRDVPF--  245 (363)
T ss_dssp             HHHHHHHGGGCCSEEEEESCTTCHHHHHHHHHSTTCEEEEEECHHH-HHHHHHHHTTCTTGGGEEEEECCCCSSSCCC--
T ss_pred             HHHHHHCCCCCCCEEEEECCCCHHHHHHHHHHCCCEEEEEECCCHH-HHHHHHHHHHCCCCCCEEEEECCCCCCCCCC--
T ss_conf             9999752445899899979995299999998689739999757116-7999988765278772699973333566789--


Q ss_pred             CCCCCEEEEECCCHHHHHH
Q ss_conf             3322201120232246788
Q gi|254780398|r  114 NISSPIRIIANLPYNIGTR  132 (284)
Q Consensus       114 ~~~~~~~vvgNLPYnIss~  132 (284)
                      +.+....++.++-+..+-+
T Consensus       246 ~~~~d~~~~~~~l~~~~~~  264 (363)
T 3dp7_A          246 PTGFDAVWMSQFLDCFSEE  264 (363)
T ss_dssp             CCCCSEEEEESCSTTSCHH
T ss_pred             CCCCEEEEEECHHHCCCHH
T ss_conf             9984489771012025614


No 169
>3duw_A OMT, O-methyltransferase, putative; alternating of alpha and beta with complex SAH; HET: SAH; 1.20A {Bacillus cereus} PDB: 3dul_A*
Probab=97.65  E-value=5.3e-05  Score=50.08  Aligned_cols=77  Identities=18%  Similarity=0.121  Sum_probs=58.1

Q ss_pred             CCHHHHHHHHHHCCCCCCCEEEEECCCCCHHHHHHHHCCC--CEEEEECCCCCCHHHHHHHHHH--HHCCCCCCHHHHCC
Q ss_conf             3989999999971989998799975898823467750235--2599842554303688787532--20012200000001
Q gi|254780398|r   31 LDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGA--RKVIVIEKDQQFFPILKDISSQ--HPNRLEIIQDDALK  106 (284)
Q Consensus        31 ~d~~i~~~iv~~~~~~~~~~VlEIGpG~G~LT~~Ll~~~~--~~v~aiEiD~~~~~~l~~~~~~--~~~~~~ii~~Dal~  106 (284)
                      +++....-+...+...+...|||||+|.|.-|..+++.-+  .+++++|.++.+++.+++.+..  ..++++++.+|+.+
T Consensus        42 i~p~~g~~L~~L~~~~~pk~ILEiGt~~G~St~~la~al~~~g~i~tie~~~~~~~~a~~~~~~~g~~~~i~~~~~~~~d  121 (223)
T 3duw_A           42 VSPTQGKFLQLLVQIQGARNILEIGTLGGYSTIWLARGLSSGGRVVTLEASEKHADIARSNIERANLNDRVEVRTGLALD  121 (223)
T ss_dssp             CCHHHHHHHHHHHHHHTCSEEEEECCTTSHHHHHHHTTCCSSCEEEEEESCHHHHHHHHHHHHHTTCTTTEEEEESCHHH
T ss_pred             CCHHHHHHHHHHHHHHCCCEEEEEECCCCHHHHHHHHHCCCCCEEEEEECCHHHHHHHHHHHHHCCCCCEEEEEECCCHH
T ss_conf             69999999999999749988999834427899999974888885999944888899999999984997646687345236


Q ss_pred             C
Q ss_conf             4
Q gi|254780398|r  107 V  107 (284)
Q Consensus       107 ~  107 (284)
                      .
T Consensus       122 ~  122 (223)
T 3duw_A          122 S  122 (223)
T ss_dssp             H
T ss_pred             H
T ss_conf             7


No 170
>2igt_A SAM dependent methyltransferase; alpha-beta sandwich, beta-barrel, structural genomics, PSI- 2, protein structure initiative; HET: MSE SAM GOL; 1.89A {Agrobacterium tumefaciens str} SCOP: c.66.1.51
Probab=97.64  E-value=0.00013  Score=47.64  Aligned_cols=99  Identities=13%  Similarity=0.085  Sum_probs=70.8

Q ss_pred             CCCCCHHHHHHHHHHC--CCCCCCEEEEECCCCCHHHHHHHHCCCCEEEEECCCCCCHHHHHHHHHH--HH-CCCCCCHH
Q ss_conf             1123989999999971--9899987999758988234677502352599842554303688787532--20-01220000
Q gi|254780398|r   28 NFLLDLNILKKIAESS--GSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQ--HP-NRLEIIQD  102 (284)
Q Consensus        28 nFL~d~~i~~~iv~~~--~~~~~~~VlEIGpG~G~LT~~Ll~~~~~~v~aiEiD~~~~~~l~~~~~~--~~-~~~~ii~~  102 (284)
                      .|-.|.+..++.++..  ...++..||++.+|+|+.+.+.+..++ +|++||.++..++.++++...  .. .+++++++
T Consensus       132 G~FlDqr~nr~~l~~~~~~~~kg~rVLdlF~ytG~~sl~aa~~GA-~V~~VD~s~~al~~a~~N~~lNg~~~~~~~~i~~  210 (332)
T 2igt_A          132 GVFPEQIVHWEWLKNAVETADRPLKVLNLFGYTGVASLVAAAAGA-EVTHVDASKKAIGWAKENQVLAGLEQAPIRWICE  210 (332)
T ss_dssp             SCCGGGHHHHHHHHHHHHHSSSCCEEEEETCTTCHHHHHHHHTTC-EEEEECSCHHHHHHHHHHHHHHTCTTSCEEEECS
T ss_pred             CCCCCCHHHHHHHHHHHHHCCCCCEEEECCCCCCHHHHHHHHCCC-EEEEEECCHHHHHHHHHHHHHHCCCCCCEEEEEC
T ss_conf             345210668999999866315897588726777778999997898-4999938799999999999984898885899926


Q ss_pred             HHCCCCHHHHCCCCCC-EEEEECCCHH
Q ss_conf             0001431552133222-0112023224
Q gi|254780398|r  103 DALKVDFEKFFNISSP-IRIIANLPYN  128 (284)
Q Consensus       103 Dal~~d~~~~~~~~~~-~~vvgNLPYn  128 (284)
                      |+.++- ......+.. -.||-+.|..
T Consensus       211 Da~~~l-~~~~~~g~~fD~IilDPP~f  236 (332)
T 2igt_A          211 DAMKFI-QREERRGSTYDIILTDPPKF  236 (332)
T ss_dssp             CHHHHH-HHHHHHTCCBSEEEECCCSE
T ss_pred             CHHHHH-HHHHHHCCCCCEEEECCCCC
T ss_conf             799999-99997189976899789644


No 171
>3g07_A 7SK snRNA methylphosphate capping enzyme; structural genomics consortium (SGC), methyltransferase, phosphoprotein, S-adenosyl-L-methionine; HET: SAM; 2.65A {Homo sapiens}
Probab=97.63  E-value=3.9e-05  Score=50.89  Aligned_cols=48  Identities=15%  Similarity=0.275  Sum_probs=40.6

Q ss_pred             CCCCCEEEEECCCCCHHHHHHHHCCC-CEEEEECCCCCCHHHHHHHHHH
Q ss_conf             89998799975898823467750235-2599842554303688787532
Q gi|254780398|r   45 SLDGITVIEIGAGPGNLTQMLLTLGA-RKVIVIEKDQQFFPILKDISSQ   92 (284)
Q Consensus        45 ~~~~~~VlEIGpG~G~LT~~Ll~~~~-~~v~aiEiD~~~~~~l~~~~~~   92 (284)
                      ..++..||+||||+|.+|..+++..+ .+|++|++++.+++.+++....
T Consensus        44 ~~~~~~vLDiGCG~G~~~i~la~~~~~~~v~GiDis~~~i~~A~~n~~~   92 (292)
T 3g07_A           44 WFRGRDVLDLGCNVGHLTLSIACKWGPSRMVGLDIDSRLIHSARQNIRH   92 (292)
T ss_dssp             GTTTSEEEEESCTTCHHHHHHHHHTCCSEEEEEESCHHHHHHHHHTC--
T ss_pred             CCCCCEEEEEECCCCHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHH
T ss_conf             1699959998579789999999878998899970988999999999998


No 172
>2hnk_A SAM-dependent O-methyltransferase; modified rossman fold; HET: SAH; 2.30A {Leptospira interrogans}
Probab=97.63  E-value=5.6e-05  Score=49.95  Aligned_cols=83  Identities=12%  Similarity=0.132  Sum_probs=62.8

Q ss_pred             CCCCCC-CCHHHHHHHHHHCCCCCCCEEEEECCCCCHHHHHHHHCCC--CEEEEECCCCCCHHHHHHHHHH--HHCCCCC
Q ss_conf             584112-3989999999971989998799975898823467750235--2599842554303688787532--2001220
Q gi|254780398|r   25 MGQNFL-LDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGA--RKVIVIEKDQQFFPILKDISSQ--HPNRLEI   99 (284)
Q Consensus        25 lGQnFL-~d~~i~~~iv~~~~~~~~~~VlEIGpG~G~LT~~Ll~~~~--~~v~aiEiD~~~~~~l~~~~~~--~~~~~~i   99 (284)
                      +|+-.+ +++....-+--.+.......|||||.+.|.=|..+++.-+  .+|+++|.|+..+..+++.+..  ..+++++
T Consensus        37 ~~~~~m~i~p~~g~~L~~L~~~~~ak~iLEiGT~~GySal~lA~al~~~g~v~tie~~~~~~~~A~~~~~~ag~~~~I~~  116 (239)
T 2hnk_A           37 LAQANMQISPEEGQFLNILTKISGAKRIIEIGTFTGYSSLCFASALPEDGKILCCDVSEEWTNVARKYWKENGLENKIFL  116 (239)
T ss_dssp             C---CCSCCHHHHHHHHHHHHHHTCSEEEEECCTTCHHHHHHHHHSCTTCEEEEEESCHHHHHHHHHHHHHTTCGGGEEE
T ss_pred             CCCCCCCCCHHHHHHHHHHHHHHCCCEEEEEECCCCHHHHHHHHHCCCCCCEEEEECCHHHHHHHHHHHHHCCCCEEEEE
T ss_conf             69987775999999999999972997799972545889999997178788689994538889999999998799625999


Q ss_pred             CHHHHCCC
Q ss_conf             00000014
Q gi|254780398|r  100 IQDDALKV  107 (284)
Q Consensus       100 i~~Dal~~  107 (284)
                      +.|||++.
T Consensus       117 ~~g~A~e~  124 (239)
T 2hnk_A          117 KLGSALET  124 (239)
T ss_dssp             EESCHHHH
T ss_pred             EEECHHHH
T ss_conf             96168999


No 173
>3c3y_A Pfomt, O-methyltransferase; plant secondary metabolism; HET: SAH; 1.37A {Mesembryanthemum crystallinum}
Probab=97.63  E-value=7.7e-05  Score=49.05  Aligned_cols=85  Identities=13%  Similarity=0.104  Sum_probs=61.3

Q ss_pred             CCCCCCC-CCHHHHHHHHHHCCCCCCCEEEEECCCCCHHHHHHHHCCC--CEEEEECCCCCCHHHHHHHHHH--HHCCCC
Q ss_conf             6584112-3989999999971989998799975898823467750235--2599842554303688787532--200122
Q gi|254780398|r   24 YMGQNFL-LDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGA--RKVIVIEKDQQFFPILKDISSQ--HPNRLE   98 (284)
Q Consensus        24 ~lGQnFL-~d~~i~~~iv~~~~~~~~~~VlEIGpG~G~LT~~Ll~~~~--~~v~aiEiD~~~~~~l~~~~~~--~~~~~~   98 (284)
                      ++++-++ +++....-+.-.+...+...|||||.|.|.=|..+++.-+  .+|+++|+|+..++.+++.+..  ..++++
T Consensus        46 ~~~~~~m~~~p~~g~lL~~L~~~~~~k~vLEiGT~~GyStl~la~al~~~g~v~tie~~~~~~~~A~~~~~~ag~~~~i~  125 (237)
T 3c3y_A           46 SHPDSYMSTSPLAGQLMSFVLKLVNAKKTIEVGVFTGYSLLLTALSIPDDGKITAIDFDREAYEIGLPFIRKAGVEHKIN  125 (237)
T ss_dssp             TSTTGGGSCCHHHHHHHHHHHHHTTCCEEEEECCTTSHHHHHHHHHSCTTCEEEEEESCHHHHHHHHHHHHHTTCGGGEE
T ss_pred             HCCCCCCCCCHHHHHHHHHHHHHHCCCEEEEEECCCCHHHHHHHHHCCCCCEEEEEEECHHHHHHHHHHHHHCCCCCEEE
T ss_conf             66987677699999999999997399889997052578999999748998489999602676899999999849981389


Q ss_pred             CCHHHHCCCC
Q ss_conf             0000000143
Q gi|254780398|r   99 IIQDDALKVD  108 (284)
Q Consensus        99 ii~~Dal~~d  108 (284)
                      ++.||+++.-
T Consensus       126 ~~~g~a~e~l  135 (237)
T 3c3y_A          126 FIESDAMLAL  135 (237)
T ss_dssp             EEESCHHHHH
T ss_pred             EEECCCCCCH
T ss_conf             9962200001


No 174
>2qe6_A Uncharacterized protein TFU_2867; putative methyltransferase, structural genomics, joint cente structural genomics, JCSG; HET: NEP SAM; 1.95A {Thermobifida fusca YX}
Probab=97.63  E-value=0.00015  Score=47.26  Aligned_cols=98  Identities=14%  Similarity=0.281  Sum_probs=66.2

Q ss_pred             CCCCCCHHHHHHHHHHCC---------------------CCCC-CEEEEECCCCCHH--HHHHHH-CCCC-EEEEECCCC
Q ss_conf             411239899999999719---------------------8999-8799975898823--467750-2352-599842554
Q gi|254780398|r   27 QNFLLDLNILKKIAESSG---------------------SLDG-ITVIEIGAGPGNL--TQMLLT-LGAR-KVIVIEKDQ   80 (284)
Q Consensus        27 QnFL~d~~i~~~iv~~~~---------------------~~~~-~~VlEIGpG~G~L--T~~Ll~-~~~~-~v~aiEiD~   80 (284)
                      .||-+|....+++.+...                     ...+ +.+|+||||+|..  |..+++ ..+. .|+.|+.|+
T Consensus        35 ~n~~~Dr~~~~~~~~~~P~~~~~~~~nR~fl~Ravr~la~~~GirqfLDlGcG~gt~~~~he~a~~~~P~arVv~vD~dp  114 (274)
T 2qe6_A           35 DNFEADRALADYACKHIPGLKESAIENRKVLVRGVRFLAGEAGISQFLDLGSGLPTVQNTHEVAQSVNPDARVVYVDIDP  114 (274)
T ss_dssp             SCCHHHHHHHHHHHHHSTTHHHHHHHHHHHHHHHHHHHHTTTCCCEEEEETCCSCCSSCHHHHHHHHCTTCEEEEEESSH
T ss_pred             CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEECCCCCCCCHHHHHHHHHCCCCEEEEEECCH
T ss_conf             57688899999999878874899999799999999999874597789994738898641999999878997799995978


Q ss_pred             CCHHHHHHHHHHHHCCCCCCHHHHCCCC-------HHHHCCCCCCEEEEECC
Q ss_conf             3036887875322001220000000143-------15521332220112023
Q gi|254780398|r   81 QFFPILKDISSQHPNRLEIIQDDALKVD-------FEKFFNISSPIRIIANL  125 (284)
Q Consensus        81 ~~~~~l~~~~~~~~~~~~ii~~Dal~~d-------~~~~~~~~~~~~vvgNL  125 (284)
                      .++.+.+.++...+ +..++++|+.+.+       ....++...|..|+.|-
T Consensus       115 ~~la~ara~l~~~~-~~~~v~aD~~~p~~il~~~~~~~~~D~~~Pvav~~~~  165 (274)
T 2qe6_A          115 MVLTHGRALLAKDP-NTAVFTADVRDPEYILNHPDVRRMIDFSRPAAIMLVG  165 (274)
T ss_dssp             HHHHHHHHHHTTCT-TEEEEECCTTCHHHHHHSHHHHHHCCTTSCCEEEETT
T ss_pred             HHHHHHHHHHCCCC-CEEEEECCCCCHHHHHCCHHHHCCCCCCCCEEEEEEE
T ss_conf             89999876504799-7689974302734342252453347866772686670


No 175
>2ip2_A Probable phenazine-specific methyltransferase; pyocyanin, phenazine-1- carboxylic acid, PHZM; 1.80A {Pseudomonas aeruginosa PAO1}
Probab=97.63  E-value=0.00034  Score=45.10  Aligned_cols=90  Identities=16%  Similarity=0.371  Sum_probs=61.7

Q ss_pred             HHHHHHHCCCCCCCEEEEECCCCCHHHHHHHHCCCC-EEEEECCCCCCHHHHHHHHHH--HHCCCCCCHHHHCCCCHHHH
Q ss_conf             999999719899987999758988234677502352-599842554303688787532--20012200000001431552
Q gi|254780398|r   36 LKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGAR-KVIVIEKDQQFFPILKDISSQ--HPNRLEIIQDDALKVDFEKF  112 (284)
Q Consensus        36 ~~~iv~~~~~~~~~~VlEIGpG~G~LT~~Ll~~~~~-~v~aiEiD~~~~~~l~~~~~~--~~~~~~ii~~Dal~~d~~~~  112 (284)
                      ...+.+..+. ++..|++||+|.|.++..++++.+. +++.++. +..++..++....  ..++++++.||+++ +++. 
T Consensus       157 ~~~~~~~~d~-~~~~vlDvG~G~G~~~~~l~~~~P~l~~~~~Dl-p~~~~~a~~~~~~~~~~~ri~~~~gd~~~-~~p~-  232 (334)
T 2ip2_A          157 FHEIPRLLDF-RGRSFVDVGGGSGELTKAILQAEPSARGVMLDR-EGSLGVARDNLSSLLAGERVSLVGGDMLQ-EVPS-  232 (334)
T ss_dssp             HHHHHHHSCC-TTCEEEEETCTTCHHHHHHHHHCTTCEEEEEEC-TTCTHHHHHHTHHHHHTTSEEEEESCTTT-CCCS-
T ss_pred             HHHHHHHHCC-CCCEEEECCCCCCHHHHHHHHHCCCEEEEEECC-CCHHHHHHHHHHHCCCCCEEEEECCCHHH-CCCC-
T ss_conf             9998886077-888673038987688888898699649998228-51128998767650777706997177654-3887-


Q ss_pred             CCCCCCEEEEECCCHHHHHH
Q ss_conf             13322201120232246788
Q gi|254780398|r  113 FNISSPIRIIANLPYNIGTR  132 (284)
Q Consensus       113 ~~~~~~~~vvgNLPYnIss~  132 (284)
                         +....+++|.=++-+-+
T Consensus       233 ---~~D~v~~~~vlh~~~d~  249 (334)
T 2ip2_A          233 ---NGDIYLLSRIIGDLDEA  249 (334)
T ss_dssp             ---SCSEEEEESCGGGCCHH
T ss_pred             ---CCCEEEEEEEECCCCHH
T ss_conf             ---57089996211158978


No 176
>3adn_A Spermidine synthase; aminopropyltransferase, polyamine synthase, rossmann fold, polyamine biosynthesis, spermidine biosynthesis, transferase; 2.90A {Escherichia coli} PDB: 3o4f_A
Probab=97.61  E-value=0.00015  Score=47.21  Aligned_cols=78  Identities=15%  Similarity=0.235  Sum_probs=60.1

Q ss_pred             CCHHHHHHHHHHC---CCCCCCEEEEECCCCCHHHHHHHHCCC-CEEEEECCCCCCHHHHHHHHHH-----H-HCCCCCC
Q ss_conf             3989999999971---989998799975898823467750235-2599842554303688787532-----2-0012200
Q gi|254780398|r   31 LDLNILKKIAESS---GSLDGITVIEIGAGPGNLTQMLLTLGA-RKVIVIEKDQQFFPILKDISSQ-----H-PNRLEII  100 (284)
Q Consensus        31 ~d~~i~~~iv~~~---~~~~~~~VlEIGpG~G~LT~~Ll~~~~-~~v~aiEiD~~~~~~l~~~~~~-----~-~~~~~ii  100 (284)
                      .|+.+...+.-+.   -..+...||-||-|.|.+.+++++..+ .+|++||+|+..++.+++-+..     + +.+++++
T Consensus        64 ~de~~Yhe~l~h~pl~~~~~p~~VLiiGgG~G~~~~e~lk~~~v~~v~~VEiD~~Vi~~a~~~~~~~~~~~~~dprv~i~  143 (294)
T 3adn_A           64 RDEFIYHEMMTHVPLLAHGHAKHVLIIGGGDGAMLREVTRHKNVESITMVEIDAGVVSFCRQYLPNHNAGSYDDPRFKLV  143 (294)
T ss_dssp             TTHHHHHHHHHHHHHHHSTTCCEEEEESCTTCHHHHHHHTCTTCCEEEEECSCTTHHHHHHHHCHHHHSSCTTCTTCCEE
T ss_pred             CCHHHHHHHHHHHHHHCCCCCCEEEEECCCCHHHHHHHHHHCCCCEEEEECCCHHHHHHHHHCCCCCCCCCCCCCCEEEE
T ss_conf             76789999998888750998566999889837999999981996638997178999999874484113554678857999


Q ss_pred             HHHHCCCC
Q ss_conf             00000143
Q gi|254780398|r  101 QDDALKVD  108 (284)
Q Consensus       101 ~~Dal~~d  108 (284)
                      .+|+.++-
T Consensus       144 ~~Da~~~l  151 (294)
T 3adn_A          144 IDDGVNFV  151 (294)
T ss_dssp             CSCSCC--
T ss_pred             ECHHHHHH
T ss_conf             51689998


No 177
>3i9f_A Putative type 11 methyltransferase; structural genomics, PSI-2, protein structure initiative; 2.50A {Sulfolobus solfataricus}
Probab=97.61  E-value=2.8e-05  Score=51.75  Aligned_cols=46  Identities=17%  Similarity=0.251  Sum_probs=39.4

Q ss_pred             CCCCCEEEEECCCCCHHHHHHHHCCCCEEEEECCCCCCHHHHHHHHH
Q ss_conf             89998799975898823467750235259984255430368878753
Q gi|254780398|r   45 SLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISS   91 (284)
Q Consensus        45 ~~~~~~VlEIGpG~G~LT~~Ll~~~~~~v~aiEiD~~~~~~l~~~~~   91 (284)
                      ..+...|||||||+|.+|..+++.+. +|+++|+++.+++.+++.+.
T Consensus        15 ~~~~~~VLDiGcG~G~~~~~l~~~~~-~v~gvD~s~~~i~~a~~~~~   60 (170)
T 3i9f_A           15 EGKKGVIVDYGCGNGFYCKYLLEFAT-KLYCIDINVIALKEVKEKFD   60 (170)
T ss_dssp             SSCCEEEEEETCTTCTTHHHHHTTEE-EEEEECSCHHHHHHHHHHCT
T ss_pred             CCCCCEEEEEECCCCHHHHHHHHCCC-EEEEEECCCCCCCEECCCCE
T ss_conf             78969799980899799999996299-89999456420100012210


No 178
>1qzz_A RDMB, aclacinomycin-10-hydroxylase; anthracycline, methyltransferase, polyketide, tailoring enzymes, structural proteomics in europe; HET: SAM; 2.10A {Streptomyces purpurascens} SCOP: a.4.5.29 c.66.1.12 PDB: 1r00_A* 1xds_A* 1xdu_A*
Probab=97.58  E-value=0.00025  Score=45.86  Aligned_cols=98  Identities=11%  Similarity=0.129  Sum_probs=63.7

Q ss_pred             HHHHHHHCCCCCCCEEEEECCCCCHHHHHHHHCCCC-EEEEECCCCCCHHHHHHHHHH--HHCCCCCCHHHHCCCCHHHH
Q ss_conf             999999719899987999758988234677502352-599842554303688787532--20012200000001431552
Q gi|254780398|r   36 LKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGAR-KVIVIEKDQQFFPILKDISSQ--HPNRLEIIQDDALKVDFEKF  112 (284)
Q Consensus        36 ~~~iv~~~~~~~~~~VlEIGpG~G~LT~~Ll~~~~~-~v~aiEiD~~~~~~l~~~~~~--~~~~~~ii~~Dal~~d~~~~  112 (284)
                      +..+++..+......|||||+|.|.++..|+++.+. +++.++. +..++..++....  ..++++++.+|+++-...  
T Consensus       171 ~~~~~~~~d~~~~~~vlDvG~G~G~~~~~l~~~~P~~~~~~~D~-~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~~p~--  247 (374)
T 1qzz_A          171 YEAPADAYDWSAVRHVLDVGGGNGGMLAAIALRAPHLRGTLVEL-AGPAERARRRFADAGLADRVTVAEGDFFKPLPV--  247 (374)
T ss_dssp             THHHHHTSCCTTCCEEEEETCTTSHHHHHHHHHCTTCEEEEEEC-HHHHHHHHHHHHHTTCTTTEEEEECCTTSCCSC--
T ss_pred             HHHHHHHCCCCCCCEEEEECCCCCHHHHHHHHHCCCEEEEEEEC-HHHHHHHHHHHHHCCCCCEEEEEECHHHHCCCC--
T ss_conf             99999848965687899979988788999999789728999607-888999999988558862278870414431898--


Q ss_pred             CCCCCCEEEEECCCHHHHH----HHHHHHHH
Q ss_conf             1332220112023224678----89999985
Q gi|254780398|r  113 FNISSPIRIIANLPYNIGT----RLLFNWIS  139 (284)
Q Consensus       113 ~~~~~~~~vvgNLPYnIss----~Il~~ll~  139 (284)
                         +....++.+.=++.+-    .||.++..
T Consensus       248 ---~~D~v~~~~vlh~~~d~~~~~iL~~~~~  275 (374)
T 1qzz_A          248 ---TADVVLLSFVLLNWSDEDALTILRGCVR  275 (374)
T ss_dssp             ---CEEEEEEESCGGGSCHHHHHHHHHHHHH
T ss_pred             ---CCCEEEEEEEEECCCHHHHHHHHHHHHH
T ss_conf             ---7748998422423898999999999998


No 179
>3cbg_A O-methyltransferase; cyanobacterium; HET: SAH FER 4FE; 2.00A {Synechocystis SP}
Probab=97.58  E-value=8.9e-05  Score=48.66  Aligned_cols=79  Identities=14%  Similarity=0.103  Sum_probs=63.2

Q ss_pred             CCCCHHHHHHHHHHCCCCCCCEEEEECCCCCHHHHHHHHCC--CCEEEEECCCCCCHHHHHHHHHH--HHCCCCCCHHHH
Q ss_conf             12398999999997198999879997589882346775023--52599842554303688787532--200122000000
Q gi|254780398|r   29 FLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLG--ARKVIVIEKDQQFFPILKDISSQ--HPNRLEIIQDDA  104 (284)
Q Consensus        29 FL~d~~i~~~iv~~~~~~~~~~VlEIGpG~G~LT~~Ll~~~--~~~v~aiEiD~~~~~~l~~~~~~--~~~~~~ii~~Da  104 (284)
                      ..+++....-+.-.+.......|||||.+.|.=|..++..-  -.+|+++|+|+..+..+++.+..  ..++++++.|||
T Consensus        54 m~i~p~~g~~L~~L~~~~~ak~iLEiGT~~GyStl~lA~al~~~g~v~tiE~~~~~~~~A~~~~~~ag~~~~i~~~~g~a  133 (232)
T 3cbg_A           54 MQISPEQAQFLGLLISLTGAKQVLEIGVFRGYSALAMALQLPPDGQIIACDQDPNATAIAKKYWQKAGVAEKISLRLGPA  133 (232)
T ss_dssp             GSCCHHHHHHHHHHHHHHTCCEEEEECCTTSHHHHHHHTTSCTTCEEEEEESCHHHHHHHHHHHHHHTCGGGEEEEESCH
T ss_pred             CCCCHHHHHHHHHHHHHHCCCEEEEEECCCCHHHHHHHHHCCCCCEEEEEECCCCHHHHHHHHHHHCCCCCCEEEEECCH
T ss_conf             76599999999999997499789998434389999999858998589999767414899999999869986289996258


Q ss_pred             CCC
Q ss_conf             014
Q gi|254780398|r  105 LKV  107 (284)
Q Consensus       105 l~~  107 (284)
                      ++.
T Consensus       134 ~e~  136 (232)
T 3cbg_A          134 LAT  136 (232)
T ss_dssp             HHH
T ss_pred             HHH
T ss_conf             999


No 180
>1mjf_A Spermidine synthase; spermidine synthetase, structural genomics, PSI, protein structure initiative; 1.80A {Pyrococcus furiosus} SCOP: c.66.1.17 PDB: 2e5w_A* 2zsu_A*
Probab=97.57  E-value=6e-05  Score=49.75  Aligned_cols=63  Identities=21%  Similarity=0.347  Sum_probs=52.5

Q ss_pred             CCCCCEEEEECCCCCHHHHHHHHCCCCEEEEECCCCCCHHHHHHHHHH-----------HHCCCCCCHHHHCCC
Q ss_conf             899987999758988234677502352599842554303688787532-----------200122000000014
Q gi|254780398|r   45 SLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQ-----------HPNRLEIIQDDALKV  107 (284)
Q Consensus        45 ~~~~~~VlEIGpG~G~LT~~Ll~~~~~~v~aiEiD~~~~~~l~~~~~~-----------~~~~~~ii~~Dal~~  107 (284)
                      ..+...||-||.|.|.+.+.+++....+|++||+|+..++.+++-+..           .+.+++++.+|+.++
T Consensus        73 ~~~p~~VLiiG~G~G~~~~~~l~~~~~~v~~VEiD~~vi~~a~~~~~~~~~~~e~~~~~~d~rv~v~~~Da~~~  146 (281)
T 1mjf_A           73 HPKPKRVLVIGGGDGGTVREVLQHDVDEVIMVEIDEDVIMVSKDLIKIDNGLLEAMLNGKHEKAKLTIGDGFEF  146 (281)
T ss_dssp             SSCCCEEEEEECTTSHHHHHHTTSCCSEEEEEESCHHHHHHHHHHTCTTTTHHHHHHTTCCSSEEEEESCHHHH
T ss_pred             CCCCCEEEEEECCCHHHHHHHHHCCCCEEEEECCCHHHHHHHHHHHHHCCCHHHHHHCCCCCCEEEEECHHHHH
T ss_conf             99988799992894399999984388358997068899999998511142134453035799669996218999


No 181
>1vlm_A SAM-dependent methyltransferase; possible histamine N-methyltransferase, structural genomics, JCSG, protein structure initiative, PSI; 2.20A {Thermotoga maritima MSB8} SCOP: c.66.1.41
Probab=97.55  E-value=5.4e-05  Score=50.04  Aligned_cols=54  Identities=20%  Similarity=0.275  Sum_probs=43.4

Q ss_pred             CCCCEEEEECCCCCHHHHHHHHCCCCEEEEECCCCCCHHHHHHHHHHHHCCCCCCHHHHCCCCHH
Q ss_conf             99987999758988234677502352599842554303688787532200122000000014315
Q gi|254780398|r   46 LDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFE  110 (284)
Q Consensus        46 ~~~~~VlEIGpG~G~LT~~Ll~~~~~~v~aiEiD~~~~~~l~~~~~~~~~~~~ii~~Dal~~d~~  110 (284)
                      .++..|||||||+|.++..+.     ++++||+.+.+++.+++.      +++++++|+.+++++
T Consensus        46 ~~~~~vLDiGcGtG~~~~~l~-----~~~giD~s~~~i~~a~~~------~i~~~~~d~~~l~~~   99 (219)
T 1vlm_A           46 LPEGRGVEIGVGTGRFAVPLK-----IKIGVEPSERMAEIARKR------GVFVLKGTAENLPLK   99 (219)
T ss_dssp             CCSSCEEEETCTTSTTHHHHT-----CCEEEESCHHHHHHHHHT------TCEEEECBTTBCCSC
T ss_pred             CCCCEEEEECCCCCHHHHHHH-----HEEEEECCHHHHHHHHHC------CCEEEECCHHHCCCC
T ss_conf             899909998586779999775-----869994999999999986------998998777878998


No 182
>2aot_A HMT, histamine N-methyltransferase; classic methyltransferase fold, protein-drug complex; HET: CSO 2PM SAH; 1.90A {Homo sapiens} SCOP: c.66.1.19 PDB: 1jqd_A* 2aou_A* 2aov_A* 2aox_A* 1jqe_A* 2aow_A*
Probab=97.54  E-value=0.00017  Score=47.00  Aligned_cols=47  Identities=19%  Similarity=0.360  Sum_probs=36.7

Q ss_pred             CCCEEEEECCCCCHHHHHHHHC-------CCCEEEEECCCCCCHHHHHHHHHHH
Q ss_conf             9987999758988234677502-------3525998425543036887875322
Q gi|254780398|r   47 DGITVIEIGAGPGNLTQMLLTL-------GARKVIVIEKDQQFFPILKDISSQH   93 (284)
Q Consensus        47 ~~~~VlEIGpG~G~LT~~Ll~~-------~~~~v~aiEiD~~~~~~l~~~~~~~   93 (284)
                      ++-.|||||||+|.+|..+++.       ..-++++||+.+.+++.+++.....
T Consensus        52 ~~~~VLdiGcG~G~~~~~il~~l~~~~~~~~~~~~~vD~s~~~l~~ak~~~~~~  105 (292)
T 2aot_A           52 SEIKILSIGGGAGEIDLQILSKVQAQYPGVCINNEVVEPSAEQIAKYKELVAKT  105 (292)
T ss_dssp             SEEEEEEETCTTSHHHHHHHHHHHHHSTTCEEEEEEECSCHHHHHHHHHHHHTC
T ss_pred             CCCEEEEECCCCCHHHHHHHHHHHHHCCCCCCEEEEEECCHHHHHHHHHHHHHH
T ss_conf             998699987979977899999888744787775999989889999999998874


No 183
>2a14_A Indolethylamine N-methyltransferase; SGC,INMT, structural genomics, structural genomics consortium; HET: SAH; 1.70A {Homo sapiens} SCOP: c.66.1.15
Probab=97.51  E-value=0.00013  Score=47.73  Aligned_cols=50  Identities=20%  Similarity=0.274  Sum_probs=42.6

Q ss_pred             CCCCCCEEEEECCCCCHHHHHHHHCCCCEEEEECCCCCCHHHHHHHHHHH
Q ss_conf             98999879997589882346775023525998425543036887875322
Q gi|254780398|r   44 GSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQH   93 (284)
Q Consensus        44 ~~~~~~~VlEIGpG~G~LT~~Ll~~~~~~v~aiEiD~~~~~~l~~~~~~~   93 (284)
                      +..++..||+||||+|..+..+++.+..+|+++++.+.+++.+++.....
T Consensus        52 ~~~~g~~vLDlGCG~G~~~~~~a~~~~~~V~giD~S~~~i~~a~~~~~~~  101 (263)
T 2a14_A           52 GGLQGDTLIDIGSGPTIYQVLAACDSFQDITLSDFTDRNREELEKWLKKE  101 (263)
T ss_dssp             TSCCEEEEEESSCTTCCGGGTTGGGTEEEEEEEESCHHHHHHHHHHHHTC
T ss_pred             CCCCCCEEEEECCCCCHHHHHHHHHCCCEEEEECCCHHHHHHHHHHHHHC
T ss_conf             88899889997888628999999847976899518999999999999865


No 184
>1inl_A Spermidine synthase; beta-barrel, rossman fold, structural genomics, PSI, protein structure initiative; 1.50A {Thermotoga maritima} SCOP: c.66.1.17 PDB: 1jq3_A*
Probab=97.43  E-value=0.0002  Score=46.55  Aligned_cols=78  Identities=19%  Similarity=0.199  Sum_probs=59.1

Q ss_pred             CCHHHHHHHHHHC---CCCCCCEEEEECCCCCHHHHHHHHCCC-CEEEEECCCCCCHHHHHHHHHH-----HHCCCCCCH
Q ss_conf             3989999999971---989998799975898823467750235-2599842554303688787532-----200122000
Q gi|254780398|r   31 LDLNILKKIAESS---GSLDGITVIEIGAGPGNLTQMLLTLGA-RKVIVIEKDQQFFPILKDISSQ-----HPNRLEIIQ  101 (284)
Q Consensus        31 ~d~~i~~~iv~~~---~~~~~~~VlEIGpG~G~LT~~Ll~~~~-~~v~aiEiD~~~~~~l~~~~~~-----~~~~~~ii~  101 (284)
                      .|+.+-+.+..+.   -..+...||-||-|.|.+.+.+++..+ .+|++||+|+..++.+++-+..     .+.+++++.
T Consensus        71 ~de~~YhE~l~h~pl~~~~~pk~VLiiGgG~G~~~~e~l~~~~~~~v~~VEID~~Vi~~a~~~~~~~~~~~~d~rv~ii~  150 (296)
T 1inl_A           71 KDEFMYHEMLAHVPMFLHPNPKKVLIIGGGDGGTLREVLKHDSVEKAILCEVDGLVIEAARKYLKQTSCGFDDPRAEIVI  150 (296)
T ss_dssp             TTHHHHHHHHHHHHHHHSSSCCEEEEEECTTCHHHHHHTTSTTCSEEEEEESCHHHHHHHHHHCHHHHGGGGCTTEEEEE
T ss_pred             CCCHHHHHHHHHHHHHHCCCCCEEEEECCCCHHHHHHHHHCCCCCCEEEECCCHHHHHHHHHHHHHHCCCCCCCCCEEEE
T ss_conf             88203269887188761999787999879827999999964997717886357899999998767622433699608996


Q ss_pred             HHHCCCC
Q ss_conf             0000143
Q gi|254780398|r  102 DDALKVD  108 (284)
Q Consensus       102 ~Dal~~d  108 (284)
                      +|+.++-
T Consensus       151 ~Da~~~l  157 (296)
T 1inl_A          151 ANGAEYV  157 (296)
T ss_dssp             SCHHHHG
T ss_pred             HHHHHHH
T ss_conf             1489999


No 185
>1tw3_A COMT, carminomycin 4-O-methyltransferase; anthracycline, methylate, tailoring enzyme, polyketide, S-adenosyl-L-homocystein; HET: SAH ERT; 2.35A {Streptomyces peucetius} SCOP: a.4.5.29 c.66.1.12 PDB: 1tw2_A*
Probab=97.42  E-value=0.00083  Score=42.64  Aligned_cols=90  Identities=12%  Similarity=0.195  Sum_probs=60.3

Q ss_pred             HHHHHHCCCCCCCEEEEECCCCCHHHHHHHHCCCC-EEEEECCCCCCHHHHHHHHHH--HHCCCCCCHHHHCCCCHHHHC
Q ss_conf             99999719899987999758988234677502352-599842554303688787532--200122000000014315521
Q gi|254780398|r   37 KKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGAR-KVIVIEKDQQFFPILKDISSQ--HPNRLEIIQDDALKVDFEKFF  113 (284)
Q Consensus        37 ~~iv~~~~~~~~~~VlEIGpG~G~LT~~Ll~~~~~-~v~aiEiD~~~~~~l~~~~~~--~~~~~~ii~~Dal~~d~~~~~  113 (284)
                      ..+.+..+......||+||+|.|.++..++++.+. +++.++. +..++..++....  ..++++++.+|+.+- ++   
T Consensus       173 ~~~~~~~~~~~~~~vlDvGgG~G~~~~~l~~~~p~~~~~~~D~-p~~~~~a~~~~~~~~l~~ri~~~~~d~~~~-~p---  247 (360)
T 1tw3_A          173 DAPAAAYDWTNVRHVLDVGGGKGGFAAAIARRAPHVSATVLEM-AGTVDTARSYLKDEGLSDRVDVVEGDFFEP-LP---  247 (360)
T ss_dssp             HHHHHHSCCTTCSEEEEETCTTSHHHHHHHHHCTTCEEEEEEC-TTHHHHHHHHHHHTTCTTTEEEEECCTTSC-CS---
T ss_pred             HHHHHHCCCCCCCEEEECCCCCCHHHHHHHHHCCCEEEEEEEC-HHHHHHHHHHHHHCCCCCCCEEECCCHHHC-CC---
T ss_conf             9999847964575798638998688999997589448999888-414799999998628874343513767542-78---


Q ss_pred             CCCCCEEEEECCCHHHHHH
Q ss_conf             3322201120232246788
Q gi|254780398|r  114 NISSPIRIIANLPYNIGTR  132 (284)
Q Consensus       114 ~~~~~~~vvgNLPYnIss~  132 (284)
                       .+....+++++=++.+.+
T Consensus       248 -~~~D~v~~~~vlh~~~d~  265 (360)
T 1tw3_A          248 -RKADAIILSFVLLNWPDH  265 (360)
T ss_dssp             -SCEEEEEEESCGGGSCHH
T ss_pred             -CCCCEEEEEEEEECCCHH
T ss_conf             -767489873477539879


No 186
>2r6z_A UPF0341 protein in RSP 3' region; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; 1.80A {Neisseria gonorrhoeae}
Probab=97.41  E-value=0.00012  Score=47.78  Aligned_cols=92  Identities=20%  Similarity=0.185  Sum_probs=67.4

Q ss_pred             HHHHHHCCCCCCCEEEEECCCCCHHHHHHHHCCCCEEEEECCCCCCHHHHHHHHHH---------HHCCCCCCHHHHCCC
Q ss_conf             99999719899987999758988234677502352599842554303688787532---------200122000000014
Q gi|254780398|r   37 KKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQ---------HPNRLEIIQDDALKV  107 (284)
Q Consensus        37 ~~iv~~~~~~~~~~VlEIGpG~G~LT~~Ll~~~~~~v~aiEiD~~~~~~l~~~~~~---------~~~~~~ii~~Dal~~  107 (284)
                      +-+++.++..++..||+..+|.|.-+-.++..++ +|++||.++.++..+++....         ...++++++||+.++
T Consensus        73 e~L~kA~g~~~~~~VLD~taGlG~Da~~lA~~G~-~V~~vE~sp~~~~Ll~~~l~~a~~~~~~~~~~~ri~~~~gDa~~~  151 (258)
T 2r6z_A           73 ELIAKAVNHTAHPTVWDATAGLGRDSFVLASLGL-TVTAFEQHPAVACLLSDGIRRALLNPETQDTAARINLHFGNAAEQ  151 (258)
T ss_dssp             CHHHHHTTGGGCCCEEETTCTTCHHHHHHHHTTC-CEEEEECCHHHHHHHHHHHHHHHHSHHHHHHHTTEEEEESCHHHH
T ss_pred             HHHHHHHCCCCCCEEEEECCCCHHHHHHHHHCCC-EEEEEECCHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHCCHHHH
T ss_conf             4999985887898199907873599999997699-899996888999999999999996968767887557100759999


Q ss_pred             CHHHHC-CCCCCEEEEECCCHHHH
Q ss_conf             315521-33222011202322467
Q gi|254780398|r  108 DFEKFF-NISSPIRIIANLPYNIG  130 (284)
Q Consensus       108 d~~~~~-~~~~~~~vvgNLPYnIs  130 (284)
                      - ..+. ....+-.|+=..||...
T Consensus       152 l-~~l~~~~~~~DvIylDPMf~~~  174 (258)
T 2r6z_A          152 M-PALVKTQGKPDIVYLDPMYPER  174 (258)
T ss_dssp             H-HHHHHHHCCCSEEEECCCC---
T ss_pred             H-HHHHHCCCCCCEEEECCCCCCC
T ss_conf             9-9999638998889988999752


No 187
>2pt6_A Spermidine synthase; transferase, structural genomics consortium, SGC,dcadoMet complex; HET: S4M 1PG; 2.00A {Plasmodium falciparum 3D7} PDB: 2pss_A* 2pt9_A*
Probab=97.40  E-value=0.00024  Score=45.95  Aligned_cols=78  Identities=18%  Similarity=0.224  Sum_probs=59.6

Q ss_pred             CCHHHHHHHHHHC---CCCCCCEEEEECCCCCHHHHHHHHCCC-CEEEEECCCCCCHHHHHHHHHH-----HHCCCCCCH
Q ss_conf             3989999999971---989998799975898823467750235-2599842554303688787532-----200122000
Q gi|254780398|r   31 LDLNILKKIAESS---GSLDGITVIEIGAGPGNLTQMLLTLGA-RKVIVIEKDQQFFPILKDISSQ-----HPNRLEIIQ  101 (284)
Q Consensus        31 ~d~~i~~~iv~~~---~~~~~~~VlEIGpG~G~LT~~Ll~~~~-~~v~aiEiD~~~~~~l~~~~~~-----~~~~~~ii~  101 (284)
                      .|+.+-..+.-++   ...+.+.||-||.|.|.+.+++++..+ .+|++||+|+..++..++-+..     .+.+++++.
T Consensus        97 ~de~~YhE~l~h~pl~~~~~pk~VLIiGgGdG~~~rellk~~~~~~v~~VEID~~Vv~~ak~~f~~~~~~~~dprv~v~~  176 (321)
T 2pt6_A           97 KDEFAYHEMMTHVPMTVSKEPKNVLVVGGGDGGIIRELCKYKSVENIDICEIDETVIEVSKIYFKNISCGYEDKRVNVFI  176 (321)
T ss_dssp             TTHHHHHHHHHHHHHHHSSSCCEEEEEECTTCHHHHHHTTCTTCCEEEEEESCHHHHHHHHHHCTTTSGGGGSTTEEEEE
T ss_pred             CCHHHHHHHHHHHHHHCCCCCCEEEEECCCCHHHHHHHHHCCCCCCEEEECCCHHHHHHHHHHHHHHCCCCCCCCEEEEE
T ss_conf             65768889987168651999576999848953999999972996414785257999999998626623443687626996


Q ss_pred             HHHCCCC
Q ss_conf             0000143
Q gi|254780398|r  102 DDALKVD  108 (284)
Q Consensus       102 ~Dal~~d  108 (284)
                      +|+.++-
T Consensus       177 ~Da~~~l  183 (321)
T 2pt6_A          177 EDASKFL  183 (321)
T ss_dssp             SCHHHHH
T ss_pred             CHHHHHH
T ss_conf             1699998


No 188
>3gwz_A MMCR; methyltransferase, mitomycin, S-adenosyl methionine, transferase; HET: MSE SAH; 1.91A {Streptomyces lavendulae} PDB: 3gxo_A*
Probab=97.39  E-value=0.001  Score=42.02  Aligned_cols=91  Identities=15%  Similarity=0.258  Sum_probs=62.3

Q ss_pred             HHHHHHHCCCCCCCEEEEECCCCCHHHHHHHHCCCC-EEEEECCCCCCHHHHHHHHHH--HHCCCCCCHHHHCCCCHHHH
Q ss_conf             999999719899987999758988234677502352-599842554303688787532--20012200000001431552
Q gi|254780398|r   36 LKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGAR-KVIVIEKDQQFFPILKDISSQ--HPNRLEIIQDDALKVDFEKF  112 (284)
Q Consensus        36 ~~~iv~~~~~~~~~~VlEIGpG~G~LT~~Ll~~~~~-~v~aiEiD~~~~~~l~~~~~~--~~~~~~ii~~Dal~~d~~~~  112 (284)
                      ...+++..+......|++||+|.|.++..++++.|. +++.++. +..++..++....  ..++++++.+|+++ +++. 
T Consensus       191 ~~~~~~~~d~~~~~~vlDvGgG~G~~~~~l~~~~P~l~~~~~Dl-p~v~~~a~~~~~~~~~~~ri~~~~~d~f~-~~p~-  267 (369)
T 3gwz_A          191 AGQVAAAYDFSGAATAVDIGGGRGSLMAAVLDAFPGLRGTLLER-PPVAEEARELLTGRGLADRCEILPGDFFE-TIPD-  267 (369)
T ss_dssp             HHHHHHHSCCTTCSEEEEETCTTSHHHHHHHHHCTTCEEEEEEC-HHHHHHHHHHHHHTTCTTTEEEEECCTTT-CCCS-
T ss_pred             HHHHHHHCCCCCCCEEEEECCCCCHHHHHHHHHCCCCEEEEEEC-HHHHHHHHHHHHHCCCCCCEEEECCCCCC-CCCC-
T ss_conf             99998636876786798857888889999999789986999989-68889999877751777523685263233-5898-


Q ss_pred             CCCCCCEEEEECCCHHHHHH
Q ss_conf             13322201120232246788
Q gi|254780398|r  113 FNISSPIRIIANLPYNIGTR  132 (284)
Q Consensus       113 ~~~~~~~~vvgNLPYnIss~  132 (284)
                         +....++.|+=++.+-+
T Consensus       268 ---~~D~~~l~~vLh~~~d~  284 (369)
T 3gwz_A          268 ---GADVYLIKHVLHDWDDD  284 (369)
T ss_dssp             ---SCSEEEEESCGGGSCHH
T ss_pred             ---CCEEEEEECCCCCCCHH
T ss_conf             ---86099980433468828


No 189
>3dli_A Methyltransferase; PSI-II, NYSGXRC, structural genomics, protein structure initiative; 2.46A {Archaeoglobus fulgidus}
Probab=97.38  E-value=0.0001  Score=48.26  Aligned_cols=55  Identities=13%  Similarity=0.221  Sum_probs=41.4

Q ss_pred             HHHHHHHHCC-CCCCCEEEEECCCCCHHHHHHHHCCCCEEEEECCCCCCHHHHHHHH
Q ss_conf             9999999719-8999879997589882346775023525998425543036887875
Q gi|254780398|r   35 ILKKIAESSG-SLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDIS   90 (284)
Q Consensus        35 i~~~iv~~~~-~~~~~~VlEIGpG~G~LT~~Ll~~~~~~v~aiEiD~~~~~~l~~~~   90 (284)
                      +..++...+. ..+++.|||||||.|.++..+.+.++ ++++||+.+..++.+++..
T Consensus        28 ~~~~l~~~i~~~~~~~~vLDiGCG~G~~~~~l~~~g~-~v~GiD~s~~~i~~a~~~~   83 (240)
T 3dli_A           28 VKARLRRYIPYFKGCRRVLDIGCGRGEFLELCKEEGI-ESIGVDINEDMIKFCEGKF   83 (240)
T ss_dssp             HHHHHGGGGGGTTTCSCEEEETCTTTHHHHHHHHHTC-CEEEECSCHHHHHHHHTTS
T ss_pred             HHHHHHHHHHCCCCCCEEEEECCCCCHHHHHHHHCCC-EEEEEECCHHHHHHHHHHC
T ss_conf             9999999752268999699973878599999997799-5999967707878876511


No 190
>1uir_A Polyamine aminopropyltransferase; spermidien synthase, spermine synthase, riken structural genomics/proteomics initiative, RSGI; 2.00A {Thermus thermophilus} SCOP: c.66.1.17
Probab=97.38  E-value=0.00027  Score=45.64  Aligned_cols=78  Identities=18%  Similarity=0.232  Sum_probs=58.0

Q ss_pred             CCCHHHHHHHHHHC---CCCCCCEEEEECCCCCHHHHHHHHCCC-CEEEEECCCCCCHHHHHHHHHH------HHCCCCC
Q ss_conf             23989999999971---989998799975898823467750235-2599842554303688787532------2001220
Q gi|254780398|r   30 LLDLNILKKIAESS---GSLDGITVIEIGAGPGNLTQMLLTLGA-RKVIVIEKDQQFFPILKDISSQ------HPNRLEI   99 (284)
Q Consensus        30 L~d~~i~~~iv~~~---~~~~~~~VlEIGpG~G~LT~~Ll~~~~-~~v~aiEiD~~~~~~l~~~~~~------~~~~~~i   99 (284)
                      -.|+.+-..+..+.   ...+.+.||-||.|.|.+.+.+++..+ .+|++||+|+..++..++-+..      .+.++++
T Consensus        57 ~~de~~Yhe~l~h~~l~~~~~pk~vLiiG~G~G~~~~~ll~~~~~~~i~~VEiDp~Vi~~a~~~f~~~~~~~~~dprv~v  136 (314)
T 1uir_A           57 ERDEYIYHETLVHPAMLTHPEPKRVLIVGGGEGATLREVLKHPTVEKAVMVDIDGELVEVAKRHMPEWHQGAFDDPRAVL  136 (314)
T ss_dssp             TTTHHHHHHHHHHHHHHHSSCCCEEEEEECTTSHHHHHHTTSTTCCEEEEEESCHHHHHHHHHHCHHHHTTGGGCTTEEE
T ss_pred             CCCHHHHHHHHHHHHHHHCCCCCEEEEECCCCHHHHHHHHHCCCCCEEEEECHHHHHHHHHHHCCCCCCCCCCCCCEEEE
T ss_conf             44177889998888886099978799988983799999986599677987402189999987518301345356870699


Q ss_pred             CHHHHCCC
Q ss_conf             00000014
Q gi|254780398|r  100 IQDDALKV  107 (284)
Q Consensus       100 i~~Dal~~  107 (284)
                      +.+|+..+
T Consensus       137 ~~~Da~~~  144 (314)
T 1uir_A          137 VIDDARAY  144 (314)
T ss_dssp             EESCHHHH
T ss_pred             EECHHHHH
T ss_conf             97259999


No 191
>1xj5_A Spermidine synthase 1; structural genomics, protein structure initiative, CESG, AT1G23820, putrescine aminopropyl transferase, SPDS1; 2.70A {Arabidopsis thaliana} SCOP: c.66.1.17 PDB: 2q41_A
Probab=97.36  E-value=0.0004  Score=44.60  Aligned_cols=77  Identities=14%  Similarity=0.226  Sum_probs=59.7

Q ss_pred             CCHHHHHHHHHHC---CCCCCCEEEEECCCCCHHHHHHHHCCC-CEEEEECCCCCCHHHHHHHHHH-----HHCCCCCCH
Q ss_conf             3989999999971---989998799975898823467750235-2599842554303688787532-----200122000
Q gi|254780398|r   31 LDLNILKKIAESS---GSLDGITVIEIGAGPGNLTQMLLTLGA-RKVIVIEKDQQFFPILKDISSQ-----HPNRLEIIQ  101 (284)
Q Consensus        31 ~d~~i~~~iv~~~---~~~~~~~VlEIGpG~G~LT~~Ll~~~~-~~v~aiEiD~~~~~~l~~~~~~-----~~~~~~ii~  101 (284)
                      .|+-+...+..+.   .....+.||-||-|.|.+.+.+++..+ .+++.||+|+..++.+++-+..     .+.+++++.
T Consensus       101 ~De~~YhEml~h~pl~~h~~PkrVLIIGgGdG~~~revlk~~~v~~v~~VEID~~Vi~~a~~~fp~~~~~~~dprv~iii  180 (334)
T 1xj5_A          101 RDECAYQEMITHLPLCSIPNPKKVLVIGGGDGGVLREVARHASIEQIDMCEIDKMVVDVSKQFFPDVAIGYEDPRVNLVI  180 (334)
T ss_dssp             TTHHHHHHHHHHHHHTTSSCCCEEEEETCSSSHHHHHHTTCTTCCEEEEEESCHHHHHHHHHHCHHHHGGGGSTTEEEEE
T ss_pred             CCHHHHHHHHHHHHHHCCCCCCEEEEECCCCHHHHHHHHHCCCCCCCEEECCCHHHHHHHHHHHHHHCCCCCCCCEEEEE
T ss_conf             66888889988888751999886999889948999999974996533575058999999997534430235799879998


Q ss_pred             HHHCCC
Q ss_conf             000014
Q gi|254780398|r  102 DDALKV  107 (284)
Q Consensus       102 ~Dal~~  107 (284)
                      +|+.++
T Consensus       181 ~Dg~~~  186 (334)
T 1xj5_A          181 GDGVAF  186 (334)
T ss_dssp             SCHHHH
T ss_pred             CCHHHH
T ss_conf             627999


No 192
>2vdw_A Vaccinia virus capping enzyme D1 subunit; nucleotidyltransferase, S-adenosyl-L-methionine, RNA metabolism, mRNA processing, methyltransferase, poxvirus; HET: SAH; 2.70A {Vaccinia virus}
Probab=97.34  E-value=0.00032  Score=45.22  Aligned_cols=88  Identities=13%  Similarity=0.134  Sum_probs=54.8

Q ss_pred             HHHHHHHH--CCCCCCCEEEEECCCCCHHHHHHHHCCCCEEEEECCCCCCHHHHHHHHHHHHCC-----------CCCCH
Q ss_conf             99999997--198999879997589882346775023525998425543036887875322001-----------22000
Q gi|254780398|r   35 ILKKIAES--SGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQHPNR-----------LEIIQ  101 (284)
Q Consensus        35 i~~~iv~~--~~~~~~~~VlEIGpG~G~LT~~Ll~~~~~~v~aiEiD~~~~~~l~~~~~~~~~~-----------~~ii~  101 (284)
                      ++.+.+.-  .+...+..||+||||.|.=+...++.++++|++|++++..++.+++.+.....+           ...+.
T Consensus        34 lI~~~~~~~~~~~~~~~~VLDlgcG~GgDl~K~~~~~~~~vvGiDiS~~~I~~A~~R~~~~~~~~~~~~~~~~~~~~~~~  113 (302)
T 2vdw_A           34 LISMYCSKTFLDDSNKRKVLAIDFGNGADLEKYFYGEIALLVATDPDADAIARGNERYNKLNSGIKTKYYKFDYIQETIR  113 (302)
T ss_dssp             HHHHHTCTTTSSCCSCCEEEETTCTTTTTHHHHHHTTCSEEEEEESCHHHHHHHHHHHHHHCC----CCCEEEEEECCTT
T ss_pred             HHHHHHHHHHCCCCCCCEEEEEEEEECHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHHCCCCCCCHHCCCCHHHHHH
T ss_conf             99999877502688899799995000452799996699889999798999999999999721243310001330599986


Q ss_pred             HHHCCCCHHHHCCCCCCEEEEE
Q ss_conf             0000143155213322201120
Q gi|254780398|r  102 DDALKVDFEKFFNISSPIRIIA  123 (284)
Q Consensus       102 ~Dal~~d~~~~~~~~~~~~vvg  123 (284)
                      +|.....+.+.+. ...+-+|+
T Consensus       114 ~d~~~~~~~~~~~-~~~FDvVs  134 (302)
T 2vdw_A          114 SDTFVSSVREVFY-FGKFNIID  134 (302)
T ss_dssp             SSSHHHHHHTTCC-SSCEEEEE
T ss_pred             CCHHHHHHHHHCC-CCCEEEEE
T ss_conf             1132444553047-89756999


No 193
>3bzb_A Uncharacterized protein; RED ALGA, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; 2.79A {Cyanidioschyzon merolae strain 10D}
Probab=97.32  E-value=0.0003  Score=45.43  Aligned_cols=60  Identities=22%  Similarity=0.342  Sum_probs=47.6

Q ss_pred             HHHHHHHHHHCCCCCCCEEEEECCCCCHHHHHHHHCCCCEEEEECC-CCCCHHHHHHHHHH
Q ss_conf             8999999997198999879997589882346775023525998425-54303688787532
Q gi|254780398|r   33 LNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEK-DQQFFPILKDISSQ   92 (284)
Q Consensus        33 ~~i~~~iv~~~~~~~~~~VlEIGpG~G~LT~~Ll~~~~~~v~aiEi-D~~~~~~l~~~~~~   92 (284)
                      .-+++.+.+......+.+|||+|+|.|..+..++..+++.|++.+. |+.++..++.+...
T Consensus        65 ~~La~~L~~~~~~~~Gk~VLELGaGtGl~gl~aA~~ga~~Vv~tD~~~~~~~~~l~~Nv~~  125 (281)
T 3bzb_A           65 RALADTLCWQPELIAGKTVCELGAGAGLVSIVAFLAGADQVVATDYPDPEILNSLESNIRE  125 (281)
T ss_dssp             HHHHHHHHHCGGGTTTCEEEETTCTTSHHHHHHHHTTCSEEEEEECSCHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHCHHHCCCCEEEEECCHHHHHHHHHHHHCCCEEEEEECCCHHHHHHHHHHHHH
T ss_conf             9999999839233099829997855229999999858987999976967889999999998


No 194
>3hp7_A Hemolysin, putative; structural genomics, APC64019, PSI-2, protein structure initiative; HET: MSE; 1.53A {Streptococcus thermophilus lmg 18311}
Probab=97.32  E-value=0.002  Score=40.23  Aligned_cols=176  Identities=17%  Similarity=0.208  Sum_probs=92.2

Q ss_pred             CCCCEEEEECCCCCHHHHHHHHCCCCEEEEECCCCC-CHHHHHHHHHHHHCCCCCCHH-HHCCCCHHHHCCCCCCEEEEE
Q ss_conf             999879997589882346775023525998425543-036887875322001220000-000143155213322201120
Q gi|254780398|r   46 LDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQ-FFPILKDISSQHPNRLEIIQD-DALKVDFEKFFNISSPIRIIA  123 (284)
Q Consensus        46 ~~~~~VlEIGpG~G~LT~~Ll~~~~~~v~aiEiD~~-~~~~l~~~~~~~~~~~~ii~~-Dal~~d~~~~~~~~~~~~vvg  123 (284)
                      ..+..+|+||+-+|..|.-||+++|++|+||+.-.. |...|    ... .++.+..+ |+-.+...++.. ..+-.++.
T Consensus        84 v~gkicLDIGaSTGGFTdvLLq~GA~~VyaVDVG~~QL~~~L----r~D-~RV~~~E~tN~R~l~~~~~~~-~~~Dliv~  157 (291)
T 3hp7_A           84 VEDMITIDIGASTGGFTDVMLQNGAKLVYAVDVGTNQLVWKL----RQD-DRVRSMEQYNFRYAEPVDFTE-GLPSFASI  157 (291)
T ss_dssp             CTTCEEEEETCTTSHHHHHHHHTTCSEEEEECSSSSCSCHHH----HTC-TTEEEECSCCGGGCCGGGCTT-CCCSEEEE
T ss_pred             CCCEEEEECCCCCCCHHHHHHHCCCCEEEEEECCCCCCCHHH----HCC-CCEEEECCCCHHHHHHHHHCC-CCCCEEEE
T ss_conf             166699977878750999999849876999835722105998----659-985431276386602866177-78777885


Q ss_pred             CCCHHHHHHHHHHHHHHHCCCCCCCHHHHEE--EHHHHHHHHHCCC---HHHH--HHHHHHHCCCCCEEEECCCCCCEEC
Q ss_conf             2322467889999985201000000110203--3447887530123---1233--2345432013320120001100001
Q gi|254780398|r  124 NLPYNIGTRLLFNWISADTWPPFWESLTLLF--QKEVGERITAQKN---SPHY--GRLSVLTGWRTKATMMFDISPHVFF  196 (284)
Q Consensus       124 NLPYnIss~Il~~ll~~~~~~~~~~~~vlmv--QkEvA~Rl~a~pg---~k~Y--g~LSv~~q~~~~v~~~~~V~~~~F~  196 (284)
                      -+-|==-+.|+-.+..... +  -..++.++  |-|++..-+.+-|   ++..  -.+.-...++.  ..-+.+-....+
T Consensus       158 DvSFISl~~iLp~~~~ll~-~--~~~~i~LiKPQFE~g~~~v~k~GvVkd~~~~~~vi~~v~~~~~--~~g~~~~~~~~S  232 (291)
T 3hp7_A          158 DVSFISLNLILPALAKILV-D--GGQVVALVKPQFEAGREQIGKNGIVRESSIHEKVLETVTAFAV--DYGFSVKGLDFS  232 (291)
T ss_dssp             CCSSSCGGGTHHHHHHHSC-T--TCEEEEEECGGGTSCGGGCC-CCCCCCHHHHHHHHHHHHHHHH--HTTEEEEEEEEC
T ss_pred             ECCHHHHHHHHHHHHHHHH-C--CCEEEEEECCCCCCCHHHCCCCCEECCHHHHHHHHHHHHHHHH--HCCCEEEEEEEC
T ss_conf             0221219999999999970-8--8759999887542575342889877799999999999999999--789979567847


Q ss_pred             CCCCCCE---EEEEECCCCCCCCCCHHHHHHHHHHHHCC
Q ss_conf             0578757---88730125885534767899999999727
Q gi|254780398|r  197 PSPKVTS---TVIHFIPHLNPIPCCLESLKKITQEAFGK  232 (284)
Q Consensus       197 P~PkVdS---~vi~l~pk~~~~~~~~~~~~~~~~~~F~~  232 (284)
                      |...=+.   -++.+++...+.......+..++..+|..
T Consensus       233 pI~G~~GN~Eyl~~~~k~~~~~~~~~~~i~~~v~~a~~~  271 (291)
T 3hp7_A          233 PIQGGHGNIEFLAHLEKTDSPQNDVPTSIKEVVAQAHKE  271 (291)
T ss_dssp             SSCCGGGCCCEEEEEEECSSCCBSCGGGHHHHHHHHHHH
T ss_pred             CCCCCCCCHHHHHHEEECCCCCCCCHHHHHHHHHHHHHH
T ss_conf             898987438556240526887765267899999999998


No 195
>2i7c_A Spermidine synthase; transferase, structural genomics consortium, SGC; HET: AAT 1PG; 1.71A {Plasmodium falciparum 3D7} PDB: 2hte_A* 3b7p_A* 2pwp_A*
Probab=97.31  E-value=0.00035  Score=44.94  Aligned_cols=76  Identities=18%  Similarity=0.257  Sum_probs=57.7

Q ss_pred             CHHHHHHHHHHC---CCCCCCEEEEECCCCCHHHHHHHHCCC-CEEEEECCCCCCHHHHHHHHHH-----HHCCCCCCHH
Q ss_conf             989999999971---989998799975898823467750235-2599842554303688787532-----2001220000
Q gi|254780398|r   32 DLNILKKIAESS---GSLDGITVIEIGAGPGNLTQMLLTLGA-RKVIVIEKDQQFFPILKDISSQ-----HPNRLEIIQD  102 (284)
Q Consensus        32 d~~i~~~iv~~~---~~~~~~~VlEIGpG~G~LT~~Ll~~~~-~~v~aiEiD~~~~~~l~~~~~~-----~~~~~~ii~~  102 (284)
                      |+-+-+.+.-++   -..+.+.||-||-|.|.+.+.+++..+ .++++||+|+..++..++-+..     .+.+++++.+
T Consensus        60 de~~Yhe~l~h~~~~~~~~pk~vLiiGgG~G~~~~ellk~~~~~~i~~VEiD~~Vi~~a~~~f~~~~~~~~d~rv~v~~~  139 (283)
T 2i7c_A           60 DEFAYHEMMTHVPMTVSKEPKNVLVVGGGDGGIIRELCKYKSVENIDICEIDETVIEVSKIYFKNISCGYEDKRVNVFIE  139 (283)
T ss_dssp             THHHHHHHHHHHHHTTSSSCCEEEEEECTTSHHHHHHTTCTTCCEEEEEESCHHHHHHHHHHCTTTSGGGGSTTEEEEES
T ss_pred             CCCCHHHHHHHHHHHCCCCCCEEEEECCCCHHHHHHHHHCCCCCEEEEECCCHHHHHHHHHHHHHCCCCCCCCCCCEEEC
T ss_conf             74315799987886529982449998388349999999749963799974789999999987465024224876528960


Q ss_pred             HHCCC
Q ss_conf             00014
Q gi|254780398|r  103 DALKV  107 (284)
Q Consensus       103 Dal~~  107 (284)
                      |+.++
T Consensus       140 Da~~~  144 (283)
T 2i7c_A          140 DASKF  144 (283)
T ss_dssp             CHHHH
T ss_pred             HHHHH
T ss_conf             68999


No 196
>3bwc_A Spermidine synthase; SAM, SGPP, structural genomics, PSI, protein structure initiative; HET: MSE SAM; 2.30A {Trypanosoma cruzi strain cl brener} PDB: 3bwb_A*
Probab=97.27  E-value=0.00066  Score=43.28  Aligned_cols=77  Identities=18%  Similarity=0.240  Sum_probs=58.2

Q ss_pred             CCHHHHHHHHHHC---CCCCCCEEEEECCCCCHHHHHHHHCCC-CEEEEECCCCCCHHHHHHHHHH-----HHCCCCCCH
Q ss_conf             3989999999971---989998799975898823467750235-2599842554303688787532-----200122000
Q gi|254780398|r   31 LDLNILKKIAESS---GSLDGITVIEIGAGPGNLTQMLLTLGA-RKVIVIEKDQQFFPILKDISSQ-----HPNRLEIIQ  101 (284)
Q Consensus        31 ~d~~i~~~iv~~~---~~~~~~~VlEIGpG~G~LT~~Ll~~~~-~~v~aiEiD~~~~~~l~~~~~~-----~~~~~~ii~  101 (284)
                      .|+.+-..+.-+.   ...+.+.||-||-|.|.+.+++++..+ .+|+.||+|+..++..++-+..     .+.+++++.
T Consensus        76 ~De~~YhE~l~h~~l~~h~~pk~VLIiGgGdG~~~rellk~~~v~~v~~VEID~~Vi~~~~~~~p~~~~~~~dprv~iii  155 (304)
T 3bwc_A           76 YDEFVYHEVLGHTSLCSHPKPERVLIIGGGDGGVLREVLRHGTVEHCDLVDIDGEVMEQSKQHFPQISRSLADPRATVRV  155 (304)
T ss_dssp             TTHHHHHHHHHHHHHTTSSSCCEEEEEECTTSHHHHHHHTCTTCCEEEEEESCHHHHHHHHHHCHHHHGGGGCTTEEEEE
T ss_pred             CCHHHHHHHHHHHHHHCCCCCCEEEEECCCCHHHHHHHHHCCCCCEEEEEECCHHHHHHHHHHCHHHHCCCCCCCEEEEE
T ss_conf             65888999988888743999786999838937999999965994279998058899999998654430111498648998


Q ss_pred             HHHCCC
Q ss_conf             000014
Q gi|254780398|r  102 DDALKV  107 (284)
Q Consensus       102 ~Dal~~  107 (284)
                      +|+.++
T Consensus       156 ~D~~~~  161 (304)
T 3bwc_A          156 GDGLAF  161 (304)
T ss_dssp             SCHHHH
T ss_pred             CHHHHH
T ss_conf             669999


No 197
>1iy9_A Spermidine synthase; rossmann fold, structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 2.30A {Bacillus subtilis} SCOP: c.66.1.17
Probab=97.27  E-value=0.00041  Score=44.53  Aligned_cols=117  Identities=14%  Similarity=0.188  Sum_probs=72.4

Q ss_pred             CHHHHHHHHHHCC---CCCCCEEEEECCCCCHHHHHHHHCCC-CEEEEECCCCCCHHHHHHHHHH-----HHCCCCCCHH
Q ss_conf             9899999999719---89998799975898823467750235-2599842554303688787532-----2001220000
Q gi|254780398|r   32 DLNILKKIAESSG---SLDGITVIEIGAGPGNLTQMLLTLGA-RKVIVIEKDQQFFPILKDISSQ-----HPNRLEIIQD  102 (284)
Q Consensus        32 d~~i~~~iv~~~~---~~~~~~VlEIGpG~G~LT~~Ll~~~~-~~v~aiEiD~~~~~~l~~~~~~-----~~~~~~ii~~  102 (284)
                      |+.+-+.++-+..   ..+.+.||-||-|.|.+.+.+++..+ .+|+.||+|+..++..++-+..     .+.+++++.+
T Consensus        57 de~~Yhe~l~h~~l~~~~~pk~VLiiGgG~G~~~~~~l~~~~~~~v~~VEiD~~Vi~~a~~~~~~~~~~~~dprv~i~~~  136 (275)
T 1iy9_A           57 DEFVYHEMVAHVPLFTHPNPEHVLVVGGGDGGVIREILKHPSVKKATLVDIDGKVIEYSKKFLPSIAGKLDDPRVDVQVD  136 (275)
T ss_dssp             THHHHHHHHHHHHHHHSSSCCEEEEESCTTCHHHHHHTTCTTCSEEEEEESCHHHHHHHHHHCHHHHTTTTSTTEEEEES
T ss_pred             CCCHHHHHHHHHHHHCCCCCCEEEEEECCCHHHHHHHHHCCCCCEEEEEEECHHHHHHHHHHCHHHCCCCCCCCCEEEEC
T ss_conf             80066799877887509996759999079639999999659964699997088999999985723135323877438988


Q ss_pred             HHCCCCHHHHCCCCCCEEE-EEC------CCHHHHHHHHHHHHHHHCCCCCCCHHHHEEEH
Q ss_conf             0001431552133222011-202------32246788999998520100000011020334
Q gi|254780398|r  103 DALKVDFEKFFNISSPIRI-IAN------LPYNIGTRLLFNWISADTWPPFWESLTLLFQK  156 (284)
Q Consensus       103 Dal~~d~~~~~~~~~~~~v-vgN------LPYnIss~Il~~ll~~~~~~~~~~~~vlmvQk  156 (284)
                      |+.++--.    ....|-+ |..      .|.+.-|+=....+.....+.    .+++.|-
T Consensus       137 Da~~~l~~----~~~~yDvIi~D~~~p~~~~~~L~t~eFy~~~~~~L~~~----Gv~v~q~  189 (275)
T 1iy9_A          137 DGFMHIAK----SENQYDVIMVDSTEPVGPAVNLFTKGFYAGIAKALKED----GIFVAQT  189 (275)
T ss_dssp             CSHHHHHT----CCSCEEEEEESCSSCCSCCCCCSTTHHHHHHHHHEEEE----EEEEEEC
T ss_pred             HHHHHHHC----CCCCCCEEEEECCCCCCCCHHHCCHHHHHHHHHHHCCC----CEEEECC
T ss_conf             58998750----56776789993899887212116899999999874799----7999856


No 198
>2g72_A Phenylethanolamine N-methyltransferase; HET: SAM F21; 2.00A {Homo sapiens} SCOP: c.66.1.15 PDB: 1yz3_A* 2an4_A* 2an5_A* 2g70_A* 2g71_A* 2an3_A* 2g8n_A* 2ony_A* 3hcb_A* 3hcc_A* 3hcd_A* 3hcf_A* 3kpj_A* 3kpu_A* 3kpv_A* 3kpw_A* 3kpy_A* 3kqm_A* 3kqo_A* 3kqp_A* ...
Probab=97.26  E-value=0.00095  Score=42.28  Aligned_cols=51  Identities=20%  Similarity=0.249  Sum_probs=42.1

Q ss_pred             CCCCCCEEEEECCCCCHHHHHHHHCCCCEEEEECCCCCCHHHHHHHHHHHH
Q ss_conf             989998799975898823467750235259984255430368878753220
Q gi|254780398|r   44 GSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQHP   94 (284)
Q Consensus        44 ~~~~~~~VlEIGpG~G~LT~~Ll~~~~~~v~aiEiD~~~~~~l~~~~~~~~   94 (284)
                      +...|+.|||||+|+|.++...+..++++|++++..+.+++.+++.....+
T Consensus        68 g~~~G~~lLDvG~Gpgi~~~l~a~~~~~~I~~~D~s~~~~~~~~kw~~~~~  118 (289)
T 2g72_A           68 GEVSGRTLIDIGSGPTVYQLLSACSHFEDITMTDFLEVNRQELGRWLQEEP  118 (289)
T ss_dssp             SCSCCSEEEEETCTTCCGGGTTGGGGCSEEEEECSCHHHHHHHHHHHTTCT
T ss_pred             CCCCCCEEEEECCCCCHHHHHHHCCCCCEEEEECCCHHHHHHHHHHHHCCC
T ss_conf             887898899957471367888756467814885498999999998875287


No 199
>2o07_A Spermidine synthase; structural genomics, structural genomics consortium, SGC, transferase; HET: SPD MTA; 1.89A {Homo sapiens} SCOP: c.66.1.17 PDB: 2o06_A* 2o05_A* 2o0l_A*
Probab=97.18  E-value=0.00061  Score=43.50  Aligned_cols=77  Identities=16%  Similarity=0.238  Sum_probs=59.0

Q ss_pred             CCHHHHHHHHHHC---CCCCCCEEEEECCCCCHHHHHHHHCC-CCEEEEECCCCCCHHHHHHHHHH-----HHCCCCCCH
Q ss_conf             3989999999971---98999879997589882346775023-52599842554303688787532-----200122000
Q gi|254780398|r   31 LDLNILKKIAESS---GSLDGITVIEIGAGPGNLTQMLLTLG-ARKVIVIEKDQQFFPILKDISSQ-----HPNRLEIIQ  101 (284)
Q Consensus        31 ~d~~i~~~iv~~~---~~~~~~~VlEIGpG~G~LT~~Ll~~~-~~~v~aiEiD~~~~~~l~~~~~~-----~~~~~~ii~  101 (284)
                      .|+-+-+.+.-+.   .....+.||-||-|.|.+.+.+++.. ..+|+.||+|+..++..++-+..     .+.+++++.
T Consensus        76 ~de~~YhE~l~h~pl~~~~~pk~VLIiGgG~G~~~~ellk~~~~~~v~~VEiD~~Vi~~a~~~~~~~~~~~~dpRv~i~~  155 (304)
T 2o07_A           76 RDEFSYQEMIANLPLCSHPNPRKVLIIGGGDGGVLREVVKHPSVESVVQCEIDEDVIQVSKKFLPGMAIGYSSSKLTLHV  155 (304)
T ss_dssp             TTHHHHHHHHHHHHHTTSSSCCEEEEEECTTSHHHHHHTTCTTCCEEEEEESCHHHHHHHHHHCHHHHGGGGCTTEEEEE
T ss_pred             CCHHHHHHHHHHHHHHCCCCCCEEEEECCCCHHHHHHHHHCCCCCEEEEECCCHHHHHHHHHHHHHHCCCCCCCCEEEEE
T ss_conf             64888889888799861999786999879945999999865985326876046999999998555533443577248996


Q ss_pred             HHHCCC
Q ss_conf             000014
Q gi|254780398|r  102 DDALKV  107 (284)
Q Consensus       102 ~Dal~~  107 (284)
                      +|+.++
T Consensus       156 ~Da~~~  161 (304)
T 2o07_A          156 GDGFEF  161 (304)
T ss_dssp             SCHHHH
T ss_pred             HHHHHH
T ss_conf             079999


No 200
>2b2c_A Spermidine synthase; beta-alpha, transferase; 2.50A {Caenorhabditis elegans} SCOP: c.66.1.17
Probab=97.13  E-value=0.00045  Score=44.32  Aligned_cols=77  Identities=19%  Similarity=0.269  Sum_probs=57.7

Q ss_pred             CHHHHHHHHHHC---CCCCCCEEEEECCCCCHHHHHHHHCCC-CEEEEECCCCCCHHHHHHHHHH----H-HCCCCCCHH
Q ss_conf             989999999971---989998799975898823467750235-2599842554303688787532----2-001220000
Q gi|254780398|r   32 DLNILKKIAESS---GSLDGITVIEIGAGPGNLTQMLLTLGA-RKVIVIEKDQQFFPILKDISSQ----H-PNRLEIIQD  102 (284)
Q Consensus        32 d~~i~~~iv~~~---~~~~~~~VlEIGpG~G~LT~~Ll~~~~-~~v~aiEiD~~~~~~l~~~~~~----~-~~~~~ii~~  102 (284)
                      |+-+-+.+.-+.   ...+.+.||=||-|.|.+.+++++..+ .+|++||+|+..++..++-+..    + +.+++++.+
T Consensus        90 De~~YhE~l~h~pl~~~~~pk~VLIiGgGdG~~~rellk~~~v~~v~~VEID~~Vi~~a~~~~~~~~~~~~dprv~i~~~  169 (314)
T 2b2c_A           90 DEFSYQEMLAHLPMFAHPDPKRVLIIGGGDGGILREVLKHESVEKVTMCEIDEMVIDVAKKFLPGMSCGFSHPKLDLFCG  169 (314)
T ss_dssp             SSSHHHHHHHHHHHHHSSSCCEEEEESCTTSHHHHHHTTCTTCCEEEEECSCHHHHHHHHHHCTTTSGGGGCTTEEEECS
T ss_pred             CHHHHHHHHHHHHHHCCCCCCEEEEECCCCHHHHHHHHHCCCCCEEEEEEECHHHHHHHHHHCHHHCCCCCCCCEEEEEC
T ss_conf             58888998764786539997879998898469999999749954589996088999999763633225456665279971


Q ss_pred             HHCCCC
Q ss_conf             000143
Q gi|254780398|r  103 DALKVD  108 (284)
Q Consensus       103 Dal~~d  108 (284)
                      |+.++-
T Consensus       170 Da~~~l  175 (314)
T 2b2c_A          170 DGFEFL  175 (314)
T ss_dssp             CHHHHH
T ss_pred             HHHHHH
T ss_conf             089997


No 201
>3ldu_A Putative methylase; structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG; HET: MSE GTP; 1.70A {Clostridium difficile}
Probab=97.11  E-value=0.0013  Score=41.40  Aligned_cols=94  Identities=16%  Similarity=0.146  Sum_probs=73.9

Q ss_pred             CCHHHHHHHHHHCCCCCCCEEEEECCCCCHHHHHHHHC--------------------------------------CC-C
Q ss_conf             39899999999719899987999758988234677502--------------------------------------35-2
Q gi|254780398|r   31 LDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTL--------------------------------------GA-R   71 (284)
Q Consensus        31 ~d~~i~~~iv~~~~~~~~~~VlEIGpG~G~LT~~Ll~~--------------------------------------~~-~   71 (284)
                      +.++++.-|+..++...++.+++==||.|+|-.+-+-.                                      .+ -
T Consensus       179 LretLAaall~l~~~~~~~~l~DPmCGSGTilIEAal~a~~~~pg~~r~f~f~~~~~~~~~~w~~~~~~~~~~~~~~~~~  258 (385)
T 3ldu_A          179 IRETLAAGLIYLTPWKAGRVLVDPMCGSGTILIEAAMIGINMAPGLNREFISEKWRTLDKKIWWDVRKDAFNKIDNESKF  258 (385)
T ss_dssp             CCHHHHHHHHHTSCCCTTSCEEETTCTTCHHHHHHHHHHTTCCTTTTSCCGGGGCTTSCHHHHHHHHHHHHHHSCCSCCC
T ss_pred             CCHHHHHHHHHHCCCCCCCCCCCCCCCCCHHHHHHHHHHHCCCCCCCCCHHHHHHHCCCHHHHHHHHHHHHHHHCCCCCC
T ss_conf             77999999999637889985578889956799999999808797756223443221268899999999998632046678


Q ss_pred             EEEEECCCCCCHHHHHHHHH--HHHCCCCCCHHHHCCCCHHHHCCCCCCEEEEECCCHHH
Q ss_conf             59984255430368878753--22001220000000143155213322201120232246
Q gi|254780398|r   72 KVIVIEKDQQFFPILKDISS--QHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNI  129 (284)
Q Consensus        72 ~v~aiEiD~~~~~~l~~~~~--~~~~~~~ii~~Dal~~d~~~~~~~~~~~~vvgNLPYnI  129 (284)
                      .+++.++|+..+...+.+..  +..+.+++.++|+.+...+     ..+..||.|+||..
T Consensus       259 ~i~g~D~d~~~i~~a~~N~~~agv~~~i~~~~~d~~~~~~~-----~~~~~ivtNPPYG~  313 (385)
T 3ldu_A          259 KIYGYDIDEESIDIARENAEIAGVDEYIEFNVGDATQFKSE-----DEFGFIITNPPYGE  313 (385)
T ss_dssp             CEEEEESCHHHHHHHHHHHHHHTCGGGEEEEECCGGGCCCS-----CBSCEEEECCCCCC
T ss_pred             CEEEECCCHHHHHHHHHHHHHCCCCCCEEEEECCHHHCCCC-----CCCCEEEECCCCCC
T ss_conf             67996587889999999999739976378875458775999-----99987995897020


No 202
>1m6y_A S-adenosyl-methyltransferase MRAW; SAM-dependent methyltransferase fold, protein-cofactor product complex, structural genomics, PSI; HET: SAH; 1.90A {Thermotoga maritima} SCOP: a.60.13.1 c.66.1.23 PDB: 1n2x_A*
Probab=97.06  E-value=0.00062  Score=43.45  Aligned_cols=78  Identities=14%  Similarity=0.242  Sum_probs=69.2

Q ss_pred             CCHHHHHHHHHHCCCCCCCEEEEECCCCCHHHHHHHHCCCC-EEEEECCCCCCHHHHHHHHHHHHCCCCCCHHHHCCCC
Q ss_conf             39899999999719899987999758988234677502352-5998425543036887875322001220000000143
Q gi|254780398|r   31 LDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGAR-KVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVD  108 (284)
Q Consensus        31 ~d~~i~~~iv~~~~~~~~~~VlEIGpG~G~LT~~Ll~~~~~-~v~aiEiD~~~~~~l~~~~~~~~~~~~ii~~Dal~~d  108 (284)
                      .-+..++.+++.+.+.++..+++---|.|.=|.+||++.+. +|+|++.|+.....+++.+..+++++.++++++-.++
T Consensus        10 H~PVll~Evl~~L~~~~~g~~vD~T~G~GGHs~~iL~~~~~~~liaiDrD~~ai~~a~~~l~~~~~r~~~~~~~f~~l~   88 (301)
T 1m6y_A           10 HIPVMVREVIEFLKPEDEKIILDCTVGEGGHSRAILEHCPGCRIIGIDVDSEVLRIAEEKLKEFSDRVSLFKVSYREAD   88 (301)
T ss_dssp             CCCTTHHHHHHHHCCCTTCEEEETTCTTSHHHHHHHHHCTTCEEEEEESCHHHHHHHHHHTGGGTTTEEEEECCGGGHH
T ss_pred             CCCHHHHHHHHHCCCCCCCEEEECCCCCCHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHCCCCCCCCCCCCCHHH
T ss_conf             2634199999836838999999918897199999997399984999838889999999876412431000012321168


No 203
>3i53_A O-methyltransferase; CO-complex, rossmann-like fold; HET: SAH; 2.08A {Streptomyces carzinostaticus subsp} PDB: 3i58_A* 3i5u_A* 3i64_A*
Probab=97.04  E-value=0.00081  Score=42.70  Aligned_cols=61  Identities=16%  Similarity=0.154  Sum_probs=44.5

Q ss_pred             CCCCCEEEEECCCCCHHHHHHHHCCCC-EEEEECCCCCCHHHHHHHHHH--HHCCCCCCHHHHCC
Q ss_conf             899987999758988234677502352-599842554303688787532--20012200000001
Q gi|254780398|r   45 SLDGITVIEIGAGPGNLTQMLLTLGAR-KVIVIEKDQQFFPILKDISSQ--HPNRLEIIQDDALK  106 (284)
Q Consensus        45 ~~~~~~VlEIGpG~G~LT~~Ll~~~~~-~v~aiEiD~~~~~~l~~~~~~--~~~~~~ii~~Dal~  106 (284)
                      ......|++||+|.|.++..++++.+. +++.++.+ ..++..++....  ...+++++.+|+.+
T Consensus       167 ~~~~~~vlDvGgG~G~~~~~l~~~~P~~~~~~~Dlp-~~~~~a~~~~~~~~~~~ri~~~~~d~~~  230 (332)
T 3i53_A          167 WAALGHVVDVGGGSGGLLSALLTAHEDLSGTVLDLQ-GPASAAHRRFLDTGLSGRAQVVVGSFFD  230 (332)
T ss_dssp             CGGGSEEEEETCTTSHHHHHHHHHCTTCEEEEEECH-HHHHHHHHHHHHTTCTTTEEEEECCTTS
T ss_pred             CCCCCEEEECCCCCCHHHHHHHHHCCCCEEEEEECH-HHHHHHHHHHHHCCCCCCEEEECCCCCC
T ss_conf             646747875289976999999997899869999784-3899999875641678745773375123


No 204
>2cmg_A Spermidine synthase; transferase, putrescine aminopropyltransferase, spermidine biosynthesis, polyamine biosynthesis, SPEE; 2.0A {Helicobacter pylori} PDB: 2cmh_A
Probab=96.94  E-value=0.00058  Score=43.60  Aligned_cols=92  Identities=9%  Similarity=-0.004  Sum_probs=62.7

Q ss_pred             CHHHHHHHHHHC---CCCCCCEEEEECCCCCHHHHHHHHCCCCEEEEECCCCCCHHHHHHHHHHH-HCCCCCCHHHHCCC
Q ss_conf             989999999971---98999879997589882346775023525998425543036887875322-00122000000014
Q gi|254780398|r   32 DLNILKKIAESS---GSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQH-PNRLEIIQDDALKV  107 (284)
Q Consensus        32 d~~i~~~iv~~~---~~~~~~~VlEIGpG~G~LT~~Ll~~~~~~v~aiEiD~~~~~~l~~~~~~~-~~~~~ii~~Dal~~  107 (284)
                      |+-+-+.++.+.   -..+.+.||-||.|.|...+++++- +.+|+.||+|+..++.+++-+... +.+++++.+|+.++
T Consensus        54 ~~~~yhE~l~h~pl~~hp~pk~VLiIGgG~G~~~re~lk~-~~~v~~VEiD~~Vi~~a~~~fp~~~d~r~~~~~~D~~~~  132 (262)
T 2cmg_A           54 FLHIESELLAHMGGCTKKELKEVLIVDGFDLELAHQLFKY-DTHIDFVQADEKILDSFISFFPHFHEVKNNKNFTHAKQL  132 (262)
T ss_dssp             GTHHHHHHHHHHHHTTSSCCCEEEEESSCCHHHHHHHTTS-SCEEEEECSCHHHHGGGTTTSTTHHHHHTCTTEEEESSG
T ss_pred             CCCCCHHHHHHHHHHCCCCCCEEEEECCCCHHHHHHHHCC-CCEEEEEEECHHHHHHHHHHCCCCCCCCCCHHHHHHHHH
T ss_conf             4331228764578753998677999459966999998458-974799983899999999868422354336015579999


Q ss_pred             CHHHHCCCCCCEEEE---ECCCHH
Q ss_conf             315521332220112---023224
Q gi|254780398|r  108 DFEKFFNISSPIRII---ANLPYN  128 (284)
Q Consensus       108 d~~~~~~~~~~~~vv---gNLPYn  128 (284)
                      --    .....|-+|   +.-|+.
T Consensus       133 l~----~~~~~yDvIi~D~~dp~~  152 (262)
T 2cmg_A          133 LD----LDIKKYDLIFCLQEPDIH  152 (262)
T ss_dssp             GG----SCCCCEEEEEESSCCCHH
T ss_pred             HH----HCCCCCCEEEECCCCCCH
T ss_conf             86----154677889988999731


No 205
>3k0b_A Predicted N6-adenine-specific DNA methylase; methylase,PF01170, putative RNA methylase, PSI,MCSG, structural genomics; 1.50A {Listeria monocytogenes str}
Probab=96.91  E-value=0.0032  Score=39.02  Aligned_cols=94  Identities=13%  Similarity=0.092  Sum_probs=74.1

Q ss_pred             CCHHHHHHHHHHCCCCCCCEEEEECCCCCHHHHHHHHC---------------------------------------CCC
Q ss_conf             39899999999719899987999758988234677502---------------------------------------352
Q gi|254780398|r   31 LDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTL---------------------------------------GAR   71 (284)
Q Consensus        31 ~d~~i~~~iv~~~~~~~~~~VlEIGpG~G~LT~~Ll~~---------------------------------------~~~   71 (284)
                      +.++++.-|+..++..+++.+++==||.|++-.+.+-.                                       ..-
T Consensus       185 LrEtLAaalL~la~~~~~~~llDPmCGSGTilIEAAl~a~~~~pg~~R~f~f~~~~~~~~~~w~~~~~~a~~~~~~~~~~  264 (393)
T 3k0b_A          185 IKETMAAALVLLTSWHPDRPFYDPVCGSGTIPIEAALIGQNIAPGFNREFVSETWDWMPKQVWADARQEAEDLANYDQPL  264 (393)
T ss_dssp             CCHHHHHHHHHHSCCCTTSCEEETTCTTSHHHHHHHHHHTTCCTTTTSCCGGGGCTTSCHHHHHHHHHHHHHHCCTTCCC
T ss_pred             CCHHHHHHHHHHHCCCCCCCCCCCCCCCCHHHHHHHHHHCCCCCCCCCCHHHHHCCCCCHHHHHHHHHHHHHHHCCCCCC
T ss_conf             75899999999737789983306789966799999999738788866243544224689999999999987543058876


Q ss_pred             EEEEECCCCCCHHHHHHHHH--HHHCCCCCCHHHHCCCCHHHHCCCCCCEEEEECCCHHH
Q ss_conf             59984255430368878753--22001220000000143155213322201120232246
Q gi|254780398|r   72 KVIVIEKDQQFFPILKDISS--QHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNI  129 (284)
Q Consensus        72 ~v~aiEiD~~~~~~l~~~~~--~~~~~~~ii~~Dal~~d~~~~~~~~~~~~vvgNLPYnI  129 (284)
                      ++++.|+|++.+..++.+..  ...+.+++.++|+.++..+     ..+-.||.|+||..
T Consensus       265 ~i~g~D~d~~ai~~a~~N~~~ag~~~~i~~~~~d~~~~~~~-----~~~~~iv~NPPYG~  319 (393)
T 3k0b_A          265 NIIGGDIDARLIEIAKQNAVEAGLGDLITFRQLQVADFQTE-----DEYGVVVANPPYGE  319 (393)
T ss_dssp             CEEEEESCHHHHHHHHHHHHHTTCTTCSEEEECCGGGCCCC-----CCSCEEEECCCCCC
T ss_pred             CEEEEECCHHHHHHHHHHHHHCCCCCHHHHHHCCHHHCCCC-----CCCCEEEECCCCHH
T ss_conf             38999598999999999999738700000332019775999-----99978998898441


No 206
>2jjq_A Uncharacterized RNA methyltransferase pyrab10780; metal-binding, tRNA methyltransferase, S-adenosyl-L-methionine, iron, 4Fe-4S, iron-sulfur; HET: SAH; 1.8A {Pyrococcus abyssi} PDB: 2vs1_A*
Probab=96.81  E-value=0.0032  Score=39.05  Aligned_cols=101  Identities=10%  Similarity=0.089  Sum_probs=65.7

Q ss_pred             CCHHHHHHHHHHC-CCCCCCEEEEECCCCCHHHHHHHHCCCCEEEEECCCCCCHHHHHHHHHHHH-CCCCCCHHHHCCCC
Q ss_conf             3989999999971-989998799975898823467750235259984255430368878753220-01220000000143
Q gi|254780398|r   31 LDLNILKKIAESS-GSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQHP-NRLEIIQDDALKVD  108 (284)
Q Consensus        31 ~d~~i~~~iv~~~-~~~~~~~VlEIGpG~G~LT~~Ll~~~~~~v~aiEiD~~~~~~l~~~~~~~~-~~~~ii~~Dal~~d  108 (284)
                      ++....+.+++.+ +..+++.|+|.-+|.|.+|..|++. +.+|++||.++..++.+++....+. ++...+.+|... .
T Consensus       273 ~N~~~~~~L~~~v~~~~~~~~vlDLycG~G~fsl~LA~~-~~~V~gvE~~~~av~~A~~na~~n~~~~~~~~~~~~~~-~  350 (425)
T 2jjq_A          273 TNSYQAVNLVRKVSELVEGEKILDMYSGVGTFGIYLAKR-GFNVKGFDSNEFAIEMARRNVEINNVDAEFEVASDREV-S  350 (425)
T ss_dssp             SBHHHHHHHHHHHHHHCCSSEEEEETCTTTHHHHHHHHT-TCEEEEEESCHHHHHHHHHHHHHHTCCEEEEECCTTTC-C
T ss_pred             HCHHHHHHHHHHHHCCCCCCEEEECCCCCCHHHHHHHHC-CCEEEEEECCHHHHHHHHHHHHHCCCCEEEEEHHHHHH-H
T ss_conf             155767542122220368777876267866888998742-85545750468889999998987797079864011344-3


Q ss_pred             HHHHCCCCCCEEEEECCCHH-HHHHHHHHHHH
Q ss_conf             15521332220112023224-67889999985
Q gi|254780398|r  109 FEKFFNISSPIRIIANLPYN-IGTRLLFNWIS  139 (284)
Q Consensus       109 ~~~~~~~~~~~~vvgNLPYn-Iss~Il~~ll~  139 (284)
                      +.      ..-.||-+-|=. .+.+++..+..
T Consensus       351 ~~------~~D~vvlDPPR~G~~~~v~~~l~~  376 (425)
T 2jjq_A          351 VK------GFDTVIVDPPRAGLHPRLVKRLNR  376 (425)
T ss_dssp             CT------TCSEEEECCCTTCSCHHHHHHHHH
T ss_pred             HC------CCCEEEECCCCCCCCHHHHHHHHH
T ss_conf             06------999999999873628999999986


No 207
>2b9e_A NOL1/NOP2/SUN domain family, member 5 isoform 2; methytransferase, structural genomics, structural genomics consortium, SGC; HET: SAM; 1.65A {Homo sapiens} SCOP: c.66.1.38
Probab=96.77  E-value=0.0033  Score=38.94  Aligned_cols=92  Identities=20%  Similarity=0.155  Sum_probs=66.7

Q ss_pred             HHHHCCCCCCCEEEEECCCCCHHHHHHHHCC--CCEEEEECCCCCCHHHHHHHHHHHH-CCCCCCHHHHCCCCHHHHCCC
Q ss_conf             9997198999879997589882346775023--5259984255430368878753220-012200000001431552133
Q gi|254780398|r   39 IAESSGSLDGITVIEIGAGPGNLTQMLLTLG--ARKVIVIEKDQQFFPILKDISSQHP-NRLEIIQDDALKVDFEKFFNI  115 (284)
Q Consensus        39 iv~~~~~~~~~~VlEIGpG~G~LT~~Ll~~~--~~~v~aiEiD~~~~~~l~~~~~~~~-~~~~ii~~Dal~~d~~~~~~~  115 (284)
                      .+..+++.+++.||+..+|+|.-|..|++..  -..|+|+|+++.-+..+++.+.... .+++++++|++.++...-. .
T Consensus        94 ~~~~l~~~~g~~VLD~CAapGgKt~~la~l~~~~~~i~a~D~~~~Rl~~l~~~~~r~g~~~v~~~~~d~~~~~~~~~~-~  172 (309)
T 2b9e_A           94 PAMLLDPPPGSHVIDACAAPGNKTSHLAALLKNQGKIFAFDLDAKRLASMATLLARAGVSCCELAEEDFLAVSPSDPR-Y  172 (309)
T ss_dssp             HHHHHCCCTTCEEEESSCTTCHHHHHHHHHHTTCSEEEEEESCHHHHHHHHHHHHHTTCCSEEEEECCGGGSCTTCGG-G
T ss_pred             HHHHCCCCCCCEEEEECCCCCHHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHCCCCEEEEEECCHHHCCCCCCC-C
T ss_conf             999739999994999678965799999987258966999808788899998767750873499970424444433444-5


Q ss_pred             CCCEEEEECCCHHHHH
Q ss_conf             2220112023224678
Q gi|254780398|r  116 SSPIRIIANLPYNIGT  131 (284)
Q Consensus       116 ~~~~~vvgNLPYnIss  131 (284)
                      ..--.|+-..|-.=+.
T Consensus       173 ~~fd~IlvDaPCSg~G  188 (309)
T 2b9e_A          173 HEVHYILLDPSCSGSG  188 (309)
T ss_dssp             TTEEEEEECCCCCC--
T ss_pred             CCEEEEEECCCCCCCC
T ss_conf             5113999328978887


No 208
>2oyr_A UPF0341 protein YHIQ; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; HET: SAH; 2.00A {Shigella flexneri 2A} SCOP: c.66.1.55 PDB: 2pgx_A 2pkw_A
Probab=96.64  E-value=0.0014  Score=41.32  Aligned_cols=70  Identities=23%  Similarity=0.364  Sum_probs=54.8

Q ss_pred             HHHHHCCCCCC--CEEEEECCCCCHHHHHHHHCCCCEEEEECCCCCCHHHHHHHHHH----------HHCCCCCCHHHHC
Q ss_conf             99997198999--87999758988234677502352599842554303688787532----------2001220000000
Q gi|254780398|r   38 KIAESSGSLDG--ITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQ----------HPNRLEIIQDDAL  105 (284)
Q Consensus        38 ~iv~~~~~~~~--~~VlEIGpG~G~LT~~Ll~~~~~~v~aiEiD~~~~~~l~~~~~~----------~~~~~~ii~~Dal  105 (284)
                      -+++.+++..+  ..||+.-+|.|.-+..++..++ +|+++|.++.++..|++.+..          ...+++++++|++
T Consensus        77 ~l~kAvGlk~~~~~~VlDaTaGlG~Da~vlA~~G~-~V~~iEr~p~l~~ll~d~l~ra~~~~~~~~~~~~ri~l~~~Ds~  155 (258)
T 2oyr_A           77 AVAKAVGIKGDYLPDVVDATAGLGRDAFVLASVGC-RVRMLERNPVVAALLDDGLARGYADAEIGGWLQERLQLIHASSL  155 (258)
T ss_dssp             HHHHHTTCBTTBCCCEEETTCTTCHHHHHHHHHTC-CEEEEECCHHHHHHHHHHHHHHHHCTTTHHHHHHHEEEEESCHH
T ss_pred             HHHHHHCCCCCCCCEEEECCCCCHHHHHHHHHCCC-EEEEEECCHHHHHHHHHHHHHHHHCCHHHHHHHHCCEEECCCHH
T ss_conf             89999676578998489878774299999997799-68998479999999999999987273778998632378738799


Q ss_pred             CCC
Q ss_conf             143
Q gi|254780398|r  106 KVD  108 (284)
Q Consensus       106 ~~d  108 (284)
                      ++-
T Consensus       156 ~~L  158 (258)
T 2oyr_A          156 TAL  158 (258)
T ss_dssp             HHS
T ss_pred             HHH
T ss_conf             998


No 209
>1zkd_A DUF185; X-RAY, NESG, RPR58, structural genomics, PSI, protein structure initiative, northeast structural genomics consortium; 2.10A {Rhodopseudomonas palustris CGA009} SCOP: c.66.1.52
Probab=96.47  E-value=0.0075  Score=36.69  Aligned_cols=71  Identities=17%  Similarity=0.248  Sum_probs=48.3

Q ss_pred             CCCCC--CCCCCHHHHHHHH-----------HHCCCCCCCEEEEECCCCCHHHHHHHHCC--------CCEEEEECCCCC
Q ss_conf             36584--1123989999999-----------97198999879997589882346775023--------525998425543
Q gi|254780398|r   23 KYMGQ--NFLLDLNILKKIA-----------ESSGSLDGITVIEIGAGPGNLTQMLLTLG--------ARKVIVIEKDQQ   81 (284)
Q Consensus        23 k~lGQ--nFL~d~~i~~~iv-----------~~~~~~~~~~VlEIGpG~G~LT~~Ll~~~--------~~~v~aiEiD~~   81 (284)
                      .+.|.  .|.+.+.+-.-+-           +..+....-.|+|+|||.|.|..-++..-        .-.++.||..+.
T Consensus        43 ~~iG~~GDF~TSpeis~~FG~~ia~~~~~~~~~~~~p~~~~ivE~GaG~G~L~~DIl~~~~~~p~~~~~~~~~~vE~s~~  122 (387)
T 1zkd_A           43 DPLGREGDFTTSPEISQMFGELLGLWSASVWKAADEPQTLRLIEIGPGRGTMMADALRALRVLPILYQSLSVHLVEINPV  122 (387)
T ss_dssp             --------CCSHHHHCHHHHHHHHHHHHHHHHHTTCCSSEEEEEECCTTSHHHHHHHHHHTTSHHHHTTEEEEEECCCHH
T ss_pred             CCCCCCCCEECCCHHHHHHHHHHHHHHHHHHHHCCCCCCCEEEEECCCCCHHHHHHHHHHHHCHHHHHCCEEEEEECCHH
T ss_conf             98889987468740579999999999999999759997716999679820789989999864815441345899936878


Q ss_pred             CHHHHHHHHHHH
Q ss_conf             036887875322
Q gi|254780398|r   82 FFPILKDISSQH   93 (284)
Q Consensus        82 ~~~~l~~~~~~~   93 (284)
                      +...-++.+...
T Consensus       123 Lr~~Q~~~L~~~  134 (387)
T 1zkd_A          123 LRQKQQTLLAGI  134 (387)
T ss_dssp             HHHHHHHHSTTC
T ss_pred             HHHHHHHHHCCC
T ss_conf             889999872477


No 210
>3lst_A CALO1 methyltransferase; calicheamicin, enediyne, SAH, structural genomics, PSI-2, protein structure initiative; HET: SAH; 2.40A {Micromonospora echinospora}
Probab=96.46  E-value=0.0062  Score=37.24  Aligned_cols=83  Identities=16%  Similarity=0.240  Sum_probs=50.2

Q ss_pred             HHHCCCCCCCEEEEECCCCCHHHHHHHHCCCCEEEEECCCCCCHHHHHH--HHHHHHCCCCCCHHHHCCCCHHHHCCCCC
Q ss_conf             9971989998799975898823467750235259984255430368878--75322001220000000143155213322
Q gi|254780398|r   40 AESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKD--ISSQHPNRLEIIQDDALKVDFEKFFNISS  117 (284)
Q Consensus        40 v~~~~~~~~~~VlEIGpG~G~LT~~Ll~~~~~~v~aiEiD~~~~~~l~~--~~~~~~~~~~ii~~Dal~~d~~~~~~~~~  117 (284)
                      .+..+......||+||+|.|..+..++++.+. +.++-.|..-. ..+.  ......++++++.+|+++- .+     +.
T Consensus       177 ~~~~d~~~~~~vlDvGgG~G~~~~~l~~~~p~-~~~~~~D~~~~-~~~~~~~~~~~~~ri~~~~~d~~~~-~p-----~~  248 (348)
T 3lst_A          177 ARAGDFPATGTVADVGGGRGGFLLTVLREHPG-LQGVLLDRAEV-VARHRLDAPDVAGRWKVVEGDFLRE-VP-----HA  248 (348)
T ss_dssp             HHHSCCCSSEEEEEETCTTSHHHHHHHHHCTT-EEEEEEECHHH-HTTCCCCCGGGTTSEEEEECCTTTC-CC-----CC
T ss_pred             HHHCCCCCCCEEEECCCCCCHHHHHHHHHCCC-EEEEECCCHHH-HHHHHHHCCCCCCCEEEECCCCCCC-CC-----CC
T ss_conf             88548887766997589986899998843898-38995361777-6666653346788368844763236-87-----75


Q ss_pred             CEEEEECCCHHHH
Q ss_conf             2011202322467
Q gi|254780398|r  118 PIRIIANLPYNIG  130 (284)
Q Consensus       118 ~~~vvgNLPYnIs  130 (284)
                      ...++.+.=++.+
T Consensus       249 D~v~~~~vlh~~~  261 (348)
T 3lst_A          249 DVHVLKRILHNWG  261 (348)
T ss_dssp             SEEEEESCGGGSC
T ss_pred             EEEEEECCHHCCC
T ss_conf             0998751021399


No 211
>3ndi_A Methyltransferase; S-adenosylmethionine, kijanose, tetronitrose, tetradeoxysuga micromonospora chalcea, TCAB9, SUGA methylation; HET: SAM TMP; 1.50A {Micromonospora chalcea} PDB: 3ndj_A*
Probab=96.26  E-value=0.01  Score=35.93  Aligned_cols=56  Identities=11%  Similarity=0.154  Sum_probs=43.2

Q ss_pred             HHHHHHHHHHCCCCCCCEEEEECCCCCHHHHHHHHCCCCEEEEECCCCCCHHHHHHH
Q ss_conf             899999999719899987999758988234677502352599842554303688787
Q gi|254780398|r   33 LNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDI   89 (284)
Q Consensus        33 ~~i~~~iv~~~~~~~~~~VlEIGpG~G~LT~~Ll~~~~~~v~aiEiD~~~~~~l~~~   89 (284)
                      +..++.+.+.....++..|||||+|.|.+-..+-+++. .++.+|.....++..++.
T Consensus        93 ~~~~~~l~~~~~~~~~~~ileIG~~dG~lL~~~~~~~~-~~~Gidps~~~~~~~~~~  148 (416)
T 3ndi_A           93 AMLARDFLATELTGPDPFIVEIGCNDGIMLRTIQEAGV-RHLGFEPSSGVAAKAREK  148 (416)
T ss_dssp             HHHHHHHHHTTTCSSSCEEEEETCTTTTTHHHHHHTTC-EEEEECSCHHHHHHHHHT
T ss_pred             HHHHHHHHHHHCCCCCCEEEEECCCCCHHHHHHHHCCC-CEEEECCCCCHHHHHCCC
T ss_conf             99999999874347787799835888705443342035-324422562034443035


No 212
>1jsx_A Glucose-inhibited division protein B; methyltransferase fold, structural genomics, PSI, protein structure initiative; 2.40A {Escherichia coli} SCOP: c.66.1.20
Probab=96.07  E-value=0.011  Score=35.75  Aligned_cols=78  Identities=19%  Similarity=0.276  Sum_probs=56.8

Q ss_pred             CCHHHHHHHHHHCCCCCCCEEEEECCCCCHHHHHHHHCCCC-EEEEECCCCCCHHHHHHHHHHHH-CCCCCCHHHHCCCC
Q ss_conf             39899999999719899987999758988234677502352-59984255430368878753220-01220000000143
Q gi|254780398|r   31 LDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGAR-KVIVIEKDQQFFPILKDISSQHP-NRLEIIQDDALKVD  108 (284)
Q Consensus        31 ~d~~i~~~iv~~~~~~~~~~VlEIGpG~G~LT~~Ll~~~~~-~v~aiEiD~~~~~~l~~~~~~~~-~~~~ii~~Dal~~d  108 (284)
                      .++.++|-++-. ...++..+++||+|.|.-...|+-..|. +++++|...+=+..|++...... ++++++++++-++.
T Consensus        50 ~~~Hi~DSl~~~-~~~~~~~ilDiGsGaG~PGi~laI~~p~~~~~Lve~~~Kk~~fL~~~~~~L~L~nv~v~~~R~e~~~  128 (207)
T 1jsx_A           50 LVRHILDSIVVA-PYLQGERFIDVGTGPGLPGIPLSIVRPEAHFTLLDSLGKRVRFLRQVQHELKLENIEPVQSRVEEFP  128 (207)
T ss_dssp             HHHHHHHHHHHG-GGCCSSEEEEETCTTTTTHHHHHHHCTTSEEEEEESCHHHHHHHHHHHHHTTCSSEEEEECCTTTSC
T ss_pred             HHHHHHHHHHHH-HHHCCCEEEECCCCCCCHHHHHHHHCCCCEEEEEECHHHHHHHHHHHHHHCCCCCCEEEEEHHHHCC
T ss_conf             999999999887-6423887986169986154789874885089997065889999999999739987304521345314


Q ss_pred             H
Q ss_conf             1
Q gi|254780398|r  109 F  109 (284)
Q Consensus       109 ~  109 (284)
                      .
T Consensus       129 ~  129 (207)
T 1jsx_A          129 S  129 (207)
T ss_dssp             C
T ss_pred             C
T ss_conf             4


No 213
>3g89_A Ribosomal RNA small subunit methyltransferase G; 16S rRNA methyltransferase, translation, cytoplasm, rRNA processing; HET: HIC SAM AMP; 1.50A {Thermus thermophilus} PDB: 3g88_A* 3g8a_A* 3g8b_A*
Probab=95.99  E-value=0.0055  Score=37.55  Aligned_cols=66  Identities=11%  Similarity=0.146  Sum_probs=50.9

Q ss_pred             CCCCCEEEEECCCCCHHHHHHHHCCCC-EEEEECCCCCCHHHHHHHHHHHH-CCCCCCHHHHCCCCHH
Q ss_conf             899987999758988234677502352-59984255430368878753220-0122000000014315
Q gi|254780398|r   45 SLDGITVIEIGAGPGNLTQMLLTLGAR-KVIVIEKDQQFFPILKDISSQHP-NRLEIIQDDALKVDFE  110 (284)
Q Consensus        45 ~~~~~~VlEIGpG~G~LT~~Ll~~~~~-~v~aiEiD~~~~~~l~~~~~~~~-~~~~ii~~Dal~~d~~  110 (284)
                      ...+..|++||+|.|.--..|+-..+. +++.||.+.+=+..|++...... ++++++++++-++...
T Consensus        78 ~~~~~~vlDiGSGaG~PGipLAI~~p~~~v~LvEs~~KK~~FL~~v~~~LgL~Nv~vi~~R~E~~~~~  145 (249)
T 3g89_A           78 WQGPLRVLDLGTGAGFPGLPLKIVRPELELVLVDATRKKVAFVERAIEVLGLKGARALWGRAEVLARE  145 (249)
T ss_dssp             CCSSCEEEEETCTTTTTHHHHHHHCTTCEEEEEESCHHHHHHHHHHHHHHTCSSEEEEECCHHHHTTS
T ss_pred             CCCCCEEEECCCCCCCCEEEEEEECCCCEEEEECCCHHHHHHHHHHHHHCCCCCCEEEEEEEEEECCC
T ss_conf             77897898426999964057878369832999808278999999999982999845887787870433


No 214
>3giw_A Protein of unknown function DUF574; rossmann-fold protein, structural genomics, joint center for structural genomics, JCSG; HET: MSE UNL; 1.45A {Streptomyces avermitilis ma-4680} PDB: 3go4_A*
Probab=95.85  E-value=0.018  Score=34.28  Aligned_cols=114  Identities=12%  Similarity=0.277  Sum_probs=71.0

Q ss_pred             CCCCCCHHHHHHHHHHCC---------------------CCCC-CEEEEECCCCC--HHHHHHHHC-CCC-EEEEECCCC
Q ss_conf             411239899999999719---------------------8999-87999758988--234677502-352-599842554
Q gi|254780398|r   27 QNFLLDLNILKKIAESSG---------------------SLDG-ITVIEIGAGPG--NLTQMLLTL-GAR-KVIVIEKDQ   80 (284)
Q Consensus        27 QnFL~d~~i~~~iv~~~~---------------------~~~~-~~VlEIGpG~G--~LT~~Ll~~-~~~-~v~aiEiD~   80 (284)
                      .||-+|....+++.+...                     ...| +-+|+||+|.+  .-+..++++ .+. +|+.++.|+
T Consensus        36 dn~~~DR~~a~~~~~~~P~~~~~a~~nR~fl~RaVr~la~e~GirQfLDlGsGlPt~~n~heva~~~~P~arVvyvD~dp  115 (277)
T 3giw_A           36 DYYPADKEAGDAMSREWPALPVHMRANRDWMNRAVAHLAKEAGIRQFLDIGTGIPTSPNLHEIAQSVAPESRVVYVDNDP  115 (277)
T ss_dssp             CCCHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHHHHHHHTSCCCEEEEESCCSCCSSCHHHHHHHHCTTCEEEEEECCH
T ss_pred             CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEECCCCCCCCCHHHHHHHHCCCCEEEEEECCH
T ss_conf             57788899999999878567999999799999999999985798789994638898874999998748997699994978


Q ss_pred             CCHHHHHHHHHHHH-CCCCCCHHHHCCCC-------HHHHCCCCCCEEE--EECCCHHHH----HHHHHHHHHH
Q ss_conf             30368878753220-01220000000143-------1552133222011--202322467----8899999852
Q gi|254780398|r   81 QFFPILKDISSQHP-NRLEIIQDDALKVD-------FEKFFNISSPIRI--IANLPYNIG----TRLLFNWISA  140 (284)
Q Consensus        81 ~~~~~l~~~~~~~~-~~~~ii~~Dal~~d-------~~~~~~~~~~~~v--vgNLPYnIs----s~Il~~ll~~  140 (284)
                      ..+.+.+.++...+ .+.+++.+|+.+-+       ....++...|..|  +|-|.|---    ..++.++...
T Consensus       116 ~vlaharalL~~~~~~~~~~v~aD~rdp~~il~~~~~~~~lD~~rPVavl~~~vlh~l~D~d~p~~lv~~l~~~  189 (277)
T 3giw_A          116 IVLTLSQGLLASTPEGRTAYVEADMLDPASILDAPELRDTLDLTRPVALTVIAIVHFVLDEDDAVGIVRRLLEP  189 (277)
T ss_dssp             HHHHTTHHHHCCCSSSEEEEEECCTTCHHHHHTCHHHHTTCCTTSCCEEEEESCGGGSCGGGCHHHHHHHHHTT
T ss_pred             HHHHHHHHHHCCCCCCCEEEEECCCCCCHHHHCCHHHHCCCCCCCCEEEEEEEEECCCCCHHHHHHHHHHHHHH
T ss_conf             89999999733798773899957666834543155664337867863466665312678423499999999972


No 215
>1ixk_A Methyltransferase; open beta sheet; 1.90A {Pyrococcus horikoshii} SCOP: c.66.1.38
Probab=95.62  E-value=0.046  Score=31.79  Aligned_cols=83  Identities=14%  Similarity=0.139  Sum_probs=62.6

Q ss_pred             CCCCCCCHHHHHHHHHHCCCCCCCEEEEECCCCCHHHHHHHHCCC--CEEEEECCCCCCHHHHHHHHHHHH-CCCCCCHH
Q ss_conf             841123989999999971989998799975898823467750235--259984255430368878753220-01220000
Q gi|254780398|r   26 GQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGA--RKVIVIEKDQQFFPILKDISSQHP-NRLEIIQD  102 (284)
Q Consensus        26 GQnFL~d~~i~~~iv~~~~~~~~~~VlEIGpG~G~LT~~Ll~~~~--~~v~aiEiD~~~~~~l~~~~~~~~-~~~~ii~~  102 (284)
                      |.=++.|.. .--.+..+++.+++.||+..+|+|.=|..|++...  ..|+|.|++..=+..++....... .++.+++.
T Consensus        98 G~~~vQD~a-S~l~~~~L~~~~g~~vLD~CAaPGgKt~~l~~~~~~~g~i~a~d~~~~R~~~l~~~l~r~g~~~i~~~~~  176 (315)
T 1ixk_A           98 GLIYIQEAS-SMYPPVALDPKPGEIVADMAAAPGGKTSYLAQLMRNDGVIYAFDVDENRLRETRLNLSRLGVLNVILFHS  176 (315)
T ss_dssp             TSEEECCHH-HHHHHHHHCCCTTCEEEECCSSCSHHHHHHHHHTTTCSEEEEECSCHHHHHHHHHHHHHHTCCSEEEESS
T ss_pred             CCEEEECCH-HHHHHHHCCCCCCCEEEECCCCCHHHHHHHHHHCCCCCEEEEECCCHHHHHHHHHHHHHCCCCCCCEECC
T ss_conf             868993621-2147661589999928895777114466533312688447841078899999999998718765211124


Q ss_pred             HHCCCCH
Q ss_conf             0001431
Q gi|254780398|r  103 DALKVDF  109 (284)
Q Consensus       103 Dal~~d~  109 (284)
                      |++..+.
T Consensus       177 d~~~~~~  183 (315)
T 1ixk_A          177 SSLHIGE  183 (315)
T ss_dssp             CGGGGGG
T ss_pred             CCHHCCC
T ss_conf             3000012


No 216
>2zfu_A Nucleomethylin, cerebral protein 1; nucleolar protein, SAM-binding protein, protein structure, nucleus, phosphoprotein, nuclear protein; HET: SAH; 2.00A {Homo sapiens}
Probab=95.54  E-value=0.014  Score=35.08  Aligned_cols=65  Identities=17%  Similarity=0.173  Sum_probs=43.3

Q ss_pred             CCCCCCCCCCHHHHHHHHHHCC-CCCCCEEEEECCCCCHHHHHHHHCCCCEEEEECCCCCCHHHHHHHHHHHHCCCCCCH
Q ss_conf             3658411239899999999719-899987999758988234677502352599842554303688787532200122000
Q gi|254780398|r   23 KYMGQNFLLDLNILKKIAESSG-SLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQ  101 (284)
Q Consensus        23 k~lGQnFL~d~~i~~~iv~~~~-~~~~~~VlEIGpG~G~LT~~Ll~~~~~~v~aiEiD~~~~~~l~~~~~~~~~~~~ii~  101 (284)
                      ++|.++.      ++++++.+. ..++..|+++|||+|.++..+..    ++.+++.-.              .+..++.
T Consensus        48 ~~wp~~p------v~~ii~~l~~~~~~~~IlDiGCG~G~~~~~l~~----~v~~~D~~~--------------~~~~~~~  103 (215)
T 2zfu_A           48 KKWPLQP------VDRIARDLRQRPASLVVADFGCGDCRLASSIRN----PVHCFDLAS--------------LDPRVTV  103 (215)
T ss_dssp             TTSSSCH------HHHHHHHHHTSCTTSCEEEETCTTCHHHHHCCS----CEEEEESSC--------------SSTTEEE
T ss_pred             HHCHHHH------HHHHHHHHHHCCCCCEEEEECCCCCHHHHHHCC----EEEEEECCC--------------CCCCEEE
T ss_conf             8770508------999999875066888799832783399986302----267730236--------------8860577


Q ss_pred             HHHCCCCHHH
Q ss_conf             0000143155
Q gi|254780398|r  102 DDALKVDFEK  111 (284)
Q Consensus       102 ~Dal~~d~~~  111 (284)
                      +|+.+.++++
T Consensus       104 ~d~~~lp~~d  113 (215)
T 2zfu_A          104 CDMAQVPLED  113 (215)
T ss_dssp             SCTTSCSCCT
T ss_pred             CCCCCCCCCC
T ss_conf             2432488889


No 217
>1wg8_A Predicted S-adenosylmethionine-dependent methyltransferase; S-adenosyl-methyltransferase, MRAW; HET: SAM; 2.00A {Thermus thermophilus} SCOP: a.60.13.1 c.66.1.23
Probab=95.30  E-value=0.017  Score=34.50  Aligned_cols=76  Identities=13%  Similarity=0.166  Sum_probs=61.9

Q ss_pred             CCCCHHHHHHHHHHCCCCCCCEEEEECCCCCHHHHHHHHCCCCEEEEECCCCCCHHHHHHHHHHHHCCCCCCHHHHCCCC
Q ss_conf             12398999999997198999879997589882346775023525998425543036887875322001220000000143
Q gi|254780398|r   29 FLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVD  108 (284)
Q Consensus        29 FL~d~~i~~~iv~~~~~~~~~~VlEIGpG~G~LT~~Ll~~~~~~v~aiEiD~~~~~~l~~~~~~~~~~~~ii~~Dal~~d  108 (284)
                      |-.-+..++.+++.+.+.++..+++.--|.|.=|.+||++++ +|+|++.|+.....+++.+.   .++.++++.+-.++
T Consensus         4 ~~H~PVLl~Evl~~L~~~~~g~~iD~T~G~GGHS~~iL~~~~-~liaiDrD~~Ai~~a~~~~~---~~~~~~~~~f~~~~   79 (285)
T 1wg8_A            4 MTHVPVLYQEALDLLAVRPGGVYVDATLGGAGHARGILERGG-RVIGLDQDPEAVARAKGLHL---PGLTVVQGNFRHLK   79 (285)
T ss_dssp             CCCCCTTHHHHHHHHTCCTTCEEEETTCTTSHHHHHHHHTTC-EEEEEESCHHHHHHHHHTCC---TTEEEEESCGGGHH
T ss_pred             CCCCCCCHHHHHHHCCCCCCCEEEEECCCCCHHHHHHHHCCC-EEEEEECCHHHHHHHHHCCC---CCCEEEEEEHHHHH
T ss_conf             986762199999727858999999948898299999995799-38999898899998664044---43168863001217


No 218
>3ajd_A Putative methyltransferase MJ0026; tRNA, M5C, rossmann fold, structural genomics, riken structu genomics/proteomics initiative; 1.27A {Methanocaldococcus jannaschii} PDB: 3a4t_A
Probab=95.26  E-value=0.035  Score=32.54  Aligned_cols=103  Identities=17%  Similarity=0.084  Sum_probs=69.3

Q ss_pred             CCCCCCCHHHHHHHHHHCCCCCCCEEEEECCCCCHHHHHHHHCC--CCEEEEECCCCCCHHHHHHHHHHHH-CCCCCCHH
Q ss_conf             84112398999999997198999879997589882346775023--5259984255430368878753220-01220000
Q gi|254780398|r   26 GQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLG--ARKVIVIEKDQQFFPILKDISSQHP-NRLEIIQD  102 (284)
Q Consensus        26 GQnFL~d~~i~~~iv~~~~~~~~~~VlEIGpG~G~LT~~Ll~~~--~~~v~aiEiD~~~~~~l~~~~~~~~-~~~~ii~~  102 (284)
                      |+=++.|..-. -.+..+++.+++.||+..+|+|.=|..|+...  -..++|+|++..-...+++...... .++.+++.
T Consensus        63 G~~~iQD~sS~-l~~~~l~~~~g~~vLD~CaapGgKt~~i~~~~~~~~~i~a~d~~~~rl~~l~~~~~r~g~~~~~~~~~  141 (274)
T 3ajd_A           63 GYYMPQSISSM-IPPIVLNPREDDFILDMCAAPGGKTTHLAQLMKNKGTIVAVEISKTRTKALKSNINRMGVLNTIIINA  141 (274)
T ss_dssp             TSEEECCSGGG-HHHHHHCCCTTCEEEETTCTTCHHHHHHHHHTTTCSEEEEEESCHHHHHHHHHHHHHTTCCSEEEEES
T ss_pred             CEEEEECHHHH-CHHHHCCCCCCCEEEEECCCCCHHHHHHHHHHHCCCCEEEECCCHHHHHHHHHHHHHHHCCCCCEECC
T ss_conf             80999455651-58975899999979990788868899999985386833873277889999988787651144100224


Q ss_pred             HHCCCCHHHHCCCCCCEEEEECCCHHH
Q ss_conf             000143155213322201120232246
Q gi|254780398|r  103 DALKVDFEKFFNISSPIRIIANLPYNI  129 (284)
Q Consensus       103 Dal~~d~~~~~~~~~~~~vvgNLPYnI  129 (284)
                      |+.+++-.........-+|+--.|=.-
T Consensus       142 d~~~~~~~~~~~~~~fD~ILlDaPCSg  168 (274)
T 3ajd_A          142 DMRKYKDYLLKNEIFFDKILLDAPCSG  168 (274)
T ss_dssp             CHHHHHHHHHHTTCCEEEEEEEECCC-
T ss_pred             CHHHHHHHHCCCCCCCCEEEECCCCCC
T ss_conf             376766653145445767996388766


No 219
>3htx_A HEN1; HEN1, small RNA methyltransferase, protein-RNA complex; HET: SAH; 3.10A {Arabidopsis thaliana}
Probab=95.21  E-value=0.027  Score=33.20  Aligned_cols=89  Identities=13%  Similarity=0.204  Sum_probs=57.2

Q ss_pred             CCCCCCCCCCCCH---HHHHHHHHHCCCCCCCEEEEECCCCCHHHHHHHHC--CCCEEEEECCCCCCHHHHHHHHHHH--
Q ss_conf             4336584112398---99999999719899987999758988234677502--3525998425543036887875322--
Q gi|254780398|r   21 PKKYMGQNFLLDL---NILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTL--GARKVIVIEKDQQFFPILKDISSQH--   93 (284)
Q Consensus        21 p~k~lGQnFL~d~---~i~~~iv~~~~~~~~~~VlEIGpG~G~LT~~Ll~~--~~~~v~aiEiD~~~~~~l~~~~~~~--   93 (284)
                      |..+..|-|..=+   .=...+++.+.-.....|+++|||.|.|-..|++.  .-..++.|+||.+..+...+.+...  
T Consensus       692 ~EermE~~~F~PPL~~QR~~aVl~iLr~~~akkVlDLGCGEGkLL~~LL~~~~~iE~IvGVDIS~~~Le~A~~rL~~dl~  771 (950)
T 3htx_A          692 SEERMEAAFFKPPLSKQRVEYALKHIRESSASTLVDFGCGSGSLLDSLLDYPTSLQTIIGVDISPKGLARAAKMLHVKLN  771 (950)
T ss_dssp             CCCCCCCCCSSSCHHHHHHHHHHHHHHHSCCSEEEEETCSSSHHHHHHTSSCCCCCEEEEEESCHHHHHHHHHHHHHHTT
T ss_pred             HHHHHCCCCCCCCHHHHHHHHHHHHHHHCCCCEEEECCCCCCHHHHHHHCCCCCEEEEEEEECCHHHHHHHHHHCCCCCC
T ss_conf             48773046779977999999999999875998899738887099999862876600799997799999999874484113


Q ss_pred             -----HCCCCCCHHHHCCCCH
Q ss_conf             -----0012200000001431
Q gi|254780398|r   94 -----PNRLEIIQDDALKVDF  109 (284)
Q Consensus        94 -----~~~~~ii~~Dal~~d~  109 (284)
                           +..+++.+|++...|-
T Consensus       772 ~~r~r~~~V~LyqGSIt~~D~  792 (950)
T 3htx_A          772 KEACNVKSATLYDGSILEFDS  792 (950)
T ss_dssp             TTCSSCSEEEEEESCTTSCCT
T ss_pred             CCCCCCCEEEEEECCCCCCCC
T ss_conf             544576568999446555243


No 220
>1g55_A DNA cytosine methyltransferase DNMT2; human DNA methyltransferase homologue; HET: DNA SAH; 1.80A {Homo sapiens} SCOP: c.66.1.26
Probab=95.16  E-value=0.033  Score=32.69  Aligned_cols=74  Identities=18%  Similarity=0.220  Sum_probs=53.4

Q ss_pred             CEEEEECCCCCHHHHHHHHCCC--CEEEEECCCCCCHHHHHHHHHHHHCCCCCCHHHHCCCCHHHHCCCCCCEEEEECCC
Q ss_conf             8799975898823467750235--25998425543036887875322001220000000143155213322201120232
Q gi|254780398|r   49 ITVIEIGAGPGNLTQMLLTLGA--RKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLP  126 (284)
Q Consensus        49 ~~VlEIGpG~G~LT~~Ll~~~~--~~v~aiEiD~~~~~~l~~~~~~~~~~~~ii~~Dal~~d~~~~~~~~~~~~vvgNLP  126 (284)
                      -.|+|.=+|.|.++..|-+.+-  +-|.|+|+|+..++.++..+.+    ..++++|+-+++..++..... -.++|-.|
T Consensus         3 lkvidLFsG~GG~~~gl~~aG~~~~~v~a~e~d~~a~~ty~~N~~~----~~~~~~di~~~~~~~~~~~~~-Dll~ggpP   77 (343)
T 1g55_A            3 LRVLELYSGVGGMHHALRESCIPAQVVAAIDVNTVANEVYKYNFPH----TQLLAKTIEGITLEEFDRLSF-DMILMSPP   77 (343)
T ss_dssp             EEEEEETCTTCHHHHHHHHHTCSEEEEEEECCCHHHHHHHHHHCTT----SCEECSCGGGCCHHHHHHHCC-SEEEECCC
T ss_pred             CEEEEECCCHHHHHHHHHHCCCCCEEEEEEECCHHHHHHHHHHCCC----CCEEECCHHHCCHHHCCCCCC-CEEEEECC
T ss_conf             7799918276489999997499986999998999999999997899----975407533498957587786-77997289


Q ss_pred             H
Q ss_conf             2
Q gi|254780398|r  127 Y  127 (284)
Q Consensus       127 Y  127 (284)
                      =
T Consensus        78 C   78 (343)
T 1g55_A           78 C   78 (343)
T ss_dssp             -
T ss_pred             C
T ss_conf             9


No 221
>2yxl_A PH0851 protein, 450AA long hypothetical FMU protein; FMU-homolog, methyltransferase, structural genomics, NPPSFA; HET: SFG; 2.55A {Pyrococcus horikoshii OT3}
Probab=95.04  E-value=0.065  Score=30.87  Aligned_cols=78  Identities=22%  Similarity=0.241  Sum_probs=59.3

Q ss_pred             CCCHHHHHHHHHHCCCCCCCEEEEECCCCCHHHHHHHHC--CCCEEEEECCCCCCHHHHHHHHHHHH-CCCCCCHHHHCC
Q ss_conf             239899999999719899987999758988234677502--35259984255430368878753220-012200000001
Q gi|254780398|r   30 LLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTL--GARKVIVIEKDQQFFPILKDISSQHP-NRLEIIQDDALK  106 (284)
Q Consensus        30 L~d~~i~~~iv~~~~~~~~~~VlEIGpG~G~LT~~Ll~~--~~~~v~aiEiD~~~~~~l~~~~~~~~-~~~~ii~~Dal~  106 (284)
                      +.|.. .--.+..+++.+++.||+..+|+|.=|..|++.  +...++|+|+++.=...+++...... .++.+...|+..
T Consensus       243 vQD~a-S~l~~~~L~~~~g~~VLD~CAaPGGKT~~la~~~~~~~~i~a~d~~~~rl~~l~~~l~r~g~~~v~~~~~d~~~  321 (450)
T 2yxl_A          243 VQEEA-SAVASIVLDPKPGETVVDLAAAPGGKTTHLAELMKNKGKIYAFDVDKMRMKRLKDFVKRMGIKIVKPLVKDARK  321 (450)
T ss_dssp             ECCHH-HHHHHHHHCCCTTCEEEESSCTTCHHHHHHHHHTTTCSEEEEECSCHHHHHHHHHHHHHTTCCSEEEECSCTTC
T ss_pred             EECCC-HHHHHHHHCCCCCCEEEEECCCCCHHHHHHHHHHHHCCCEEECCCCHHHHHHHHHHHHHHCCCCEEEEECCCHH
T ss_conf             96432-06689873457898587506886579999999865138503112548778778999997087631676133010


Q ss_pred             CC
Q ss_conf             43
Q gi|254780398|r  107 VD  108 (284)
Q Consensus       107 ~d  108 (284)
                      .+
T Consensus       322 ~~  323 (450)
T 2yxl_A          322 AP  323 (450)
T ss_dssp             CS
T ss_pred             CC
T ss_conf             64


No 222
>3cvo_A Methyltransferase-like protein of unknown function; YP_167254.1, structural genomics, joint center for structural genomics, JCSG; HET: MSE PG4; 1.80A {Silicibacter pomeroyi dss-3}
Probab=94.98  E-value=0.04  Score=32.22  Aligned_cols=60  Identities=15%  Similarity=0.231  Sum_probs=43.8

Q ss_pred             CCCHHHHHHHHHHCCCCCCCEEEEECCCCCHHHHHHHHCCCCEEEEECCCCCCHHHHHHHHHHH
Q ss_conf             2398999999997198999879997589882346775023525998425543036887875322
Q gi|254780398|r   30 LLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQH   93 (284)
Q Consensus        30 L~d~~i~~~iv~~~~~~~~~~VlEIGpG~G~LT~~Ll~~~~~~v~aiEiD~~~~~~l~~~~~~~   93 (284)
                      ..++.-.+-+.+.+.  +++.|||.|+|.  =|...++...++|++||-|+.+++.+++.....
T Consensus        15 t~~~~e~~~l~~~l~--~~~~iLE~GSGg--ST~~~a~~~~~~I~SVE~d~~W~~~v~~~l~~~   74 (202)
T 3cvo_A           15 TMPPAEAEALRMAYE--EAEVILEYGSGG--STVVAAELPGKHVTSVESDRAWARMMKAWLAAN   74 (202)
T ss_dssp             CSCHHHHHHHHHHHH--HCSEEEEESCSH--HHHHHHTSTTCEEEEEESCHHHHHHHHHHHHHS
T ss_pred             CCCHHHHHHHHHHHC--CCCEEEEECCCH--HHHHHHHCCCCEEEEECCCHHHHHHHHHHHHHC
T ss_conf             899889999999825--799999968989--899999817980899679999999999986541


No 223
>2frx_A Hypothetical protein YEBU; rossmann-type S-adenosylmethionine-dependent methyltransferase domain; 2.90A {Escherichia coli}
Probab=94.95  E-value=0.078  Score=30.39  Aligned_cols=82  Identities=12%  Similarity=0.138  Sum_probs=59.7

Q ss_pred             CCCCCCCHHHHHHHHHH--CCCCCCCEEEEECCCCCHHHHHHHHCCC--CEEEEECCCCCCHHHHHHHHHHHH-CCCCCC
Q ss_conf             84112398999999997--1989998799975898823467750235--259984255430368878753220-012200
Q gi|254780398|r   26 GQNFLLDLNILKKIAES--SGSLDGITVIEIGAGPGNLTQMLLTLGA--RKVIVIEKDQQFFPILKDISSQHP-NRLEII  100 (284)
Q Consensus        26 GQnFL~d~~i~~~iv~~--~~~~~~~~VlEIGpG~G~LT~~Ll~~~~--~~v~aiEiD~~~~~~l~~~~~~~~-~~~~ii  100 (284)
                      |.=++.|++-.- .+..  +++.+++.||+..+|+|.=|..|+....  ..|+|.|++..=+..|++...... .++.+.
T Consensus        95 G~~yvQD~sS~l-~~~~L~~~~~~g~~VLDlCAAPGgKT~~la~~~~~~g~lvAnD~~~~R~~~L~~nl~r~g~~nv~~~  173 (479)
T 2frx_A           95 GLFYIQEASSML-PVAALFADGNAPQRVMDVAAAPGSKTTQISARMNNEGAILANEFSASRVKVLHANISRCGISNVALT  173 (479)
T ss_dssp             TSEEECCHHHHH-HHHHHTTTTCCCSEEEESSCTTSHHHHHHHHHTTTCSEEEEECSSHHHHHHHHHHHHHHTCCSEEEE
T ss_pred             CEEEEECHHHHH-HHHHHHHCCCCCCEEEEECCCCCHHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHCCCCCEEEE
T ss_conf             369998889978-9999752789998699947886589999998624682599653657778899998986389718999


Q ss_pred             HHHHCCCC
Q ss_conf             00000143
Q gi|254780398|r  101 QDDALKVD  108 (284)
Q Consensus       101 ~~Dal~~d  108 (284)
                      +.|+..++
T Consensus       174 ~~d~~~~~  181 (479)
T 2frx_A          174 HFDGRVFG  181 (479)
T ss_dssp             CCCSTTHH
T ss_pred             ECCCHHCC
T ss_conf             35400114


No 224
>1sqg_A SUN protein, FMU protein; rossmann-fold, mixed beta sheet, methyltransferase-fold, RNA-binding domain; 1.65A {Escherichia coli} SCOP: a.79.1.3 c.66.1.38 PDB: 1sqf_A
Probab=94.78  E-value=0.078  Score=30.39  Aligned_cols=79  Identities=16%  Similarity=0.190  Sum_probs=56.6

Q ss_pred             CCCCCCCHHHHHHHHHHCCCCCCCEEEEECCCCCHHHHHHHHCCC-CEEEEECCCCCCHHHHHHHHHHHH-CCCCCCHHH
Q ss_conf             841123989999999971989998799975898823467750235-259984255430368878753220-012200000
Q gi|254780398|r   26 GQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGA-RKVIVIEKDQQFFPILKDISSQHP-NRLEIIQDD  103 (284)
Q Consensus        26 GQnFL~d~~i~~~iv~~~~~~~~~~VlEIGpG~G~LT~~Ll~~~~-~~v~aiEiD~~~~~~l~~~~~~~~-~~~~ii~~D  103 (284)
                      |.=.+.|..-. -.+..+++.+++.||+..+|+|.=|..|+.... ..++|+|++..=...+++...... ++..+...|
T Consensus       226 G~~~vQD~aSq-l~~~~l~~~~~~~VLD~CAaPGgKt~~la~~~~~~~i~a~d~~~~r~~~l~~~~~r~g~~~~~~~~~~  304 (429)
T 1sqg_A          226 GWVTVQDASAQ-GCMTWLAPQNGEHILDLCAAPGGKTTHILEVAPEAQVVAVDIDEQRLSRVYDNLKRLGMKATVKQGDG  304 (429)
T ss_dssp             TSEEECCHHHH-THHHHHCCCTTCEEEEESCTTCHHHHHHHHHCTTCEEEEEESSTTTHHHHHHHHHHTTCCCEEEECCT
T ss_pred             CEEEECCHHHH-HHHHHCCCCCCCEEEEECCCCHHHHHHHHHHCCCCCCEEECCHHHHHHHHHHHHHHCCCCCEEECCCC
T ss_conf             74773514545-67762184214414560688048999999862224656223426778888777864164311102344


Q ss_pred             HC
Q ss_conf             00
Q gi|254780398|r  104 AL  105 (284)
Q Consensus       104 al  105 (284)
                      +.
T Consensus       305 ~~  306 (429)
T 1sqg_A          305 RY  306 (429)
T ss_dssp             TC
T ss_pred             CC
T ss_conf             33


No 225
>2qrv_A DNA (cytosine-5)-methyltransferase 3A; DNA methyltransferase 3A (DNMT3A) and ITS regulatory factor; HET: DNA SAH; 2.89A {Homo sapiens}
Probab=94.68  E-value=0.085  Score=30.17  Aligned_cols=78  Identities=17%  Similarity=0.086  Sum_probs=52.6

Q ss_pred             CCCEEEEECCCCCHHHHHHHHCCCC--EEEEECCCCCCHHHHHHHHHHHHCCCCCCHHHHCCCCHHHHCCCCCCEEEEEC
Q ss_conf             9987999758988234677502352--59984255430368878753220012200000001431552133222011202
Q gi|254780398|r   47 DGITVIEIGAGPGNLTQMLLTLGAR--KVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIAN  124 (284)
Q Consensus        47 ~~~~VlEIGpG~G~LT~~Ll~~~~~--~v~aiEiD~~~~~~l~~~~~~~~~~~~ii~~Dal~~d~~~~~~~~~~~~vvgN  124 (284)
                      +.-.|+|.=+|.|.++..+-+.|..  .|.|+|+|+..++.++.++..    -.++.+|+-+++.......+..-.++|-
T Consensus        15 ~~lkvl~LFsG~GG~~~gl~~aG~~~~~v~a~e~~~~a~~~y~~n~~~----~~~~~~Di~~~~~~~~~~~~~~Dil~gg   90 (295)
T 2qrv_A           15 KPIRVLSLFDGIATGLLVLKDLGIQVDRYIASEVCEDSITVGMVRHQG----KIMYVGDVRSVTQKHIQEWGPFDLVIGG   90 (295)
T ss_dssp             CCEEEEEETCTTTHHHHHHHHTTBCEEEEEEECCCHHHHHHHHHHTTT----CEEEECCGGGCCHHHHHHTCCCSEEEEC
T ss_pred             CCCEEEEECCCCCHHHHHHHHCCCCEEEEEEEECCHHHHHHHHHHCCC----CCCCCCCEEEEEECCCCCCCCCEEEECC
T ss_conf             997599979574479999998599847999997899999999987899----9770366015740244567767399726


Q ss_pred             CCHH
Q ss_conf             3224
Q gi|254780398|r  125 LPYN  128 (284)
Q Consensus       125 LPYn  128 (284)
                      .|-+
T Consensus        91 pPCQ   94 (295)
T 2qrv_A           91 SPCN   94 (295)
T ss_dssp             CCCG
T ss_pred             CCCC
T ss_conf             8887


No 226
>1dct_A Protein (modification methylase HAEIII); enzyme, cytosine methylase, transferase/DNA complex; HET: DNA C49 5CM; 2.80A {Haemophilus influenzae biotypeaegyptius} SCOP: c.66.1.26
Probab=94.64  E-value=0.053  Score=31.42  Aligned_cols=59  Identities=22%  Similarity=0.329  Sum_probs=48.2

Q ss_pred             EEEEECCCCCHHHHHHHHCCCCEEEEECCCCCCHHHHHHHHHHHHCCCCCCHHHHCCCCHHHHC
Q ss_conf             7999758988234677502352599842554303688787532200122000000014315521
Q gi|254780398|r   50 TVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFF  113 (284)
Q Consensus        50 ~VlEIGpG~G~LT~~Ll~~~~~~v~aiEiD~~~~~~l~~~~~~~~~~~~ii~~Dal~~d~~~~~  113 (284)
                      .|||.=+|.|.++..+-+.|.+.+.|+|+|+..++.++..+.   +  +++++|+.+++..++.
T Consensus         2 kv~~lF~G~Gg~~~gl~~aG~~~~~a~e~d~~a~~~~~~N~~---~--~~~~~Di~~~~~~~~~   60 (324)
T 1dct_A            2 NLISLFSGAGGLDLGFQKAGFRIICANEYDKSIWKTYESNHS---A--KLIKGDISKISSDEFP   60 (324)
T ss_dssp             EEEEESCSSCHHHHHHHHHTCEEEEEEECCHHHHHHHHHHCC---S--EEEESCTTTSCGGGSC
T ss_pred             EEEEECCCCCHHHHHHHHCCCEEEEEEECCHHHHHHHHHHCC---C--CCCCCCHHHCCHHHCC
T ss_conf             099948074789999998799799999679999999998789---9--9724982459985767


No 227
>2c7p_A Modification methylase HHAI; DNA methyltransferase, methyltransferase, base flipping, restriction system, transferase; HET: 5CM A1P SAH EPE CIT; 1.7A {Haemophilus haemolyticus} SCOP: c.66.1.26 PDB: 10mh_A* 1m0e_A* 1mht_A* 1hmy_A* 1skm_A* 2c7o_A* 2c7q_A* 2hmy_B* 2hr1_A* 3eeo_A* 3mht_A* 4mht_A* 5mht_A* 6mht_A* 7mht_A* 8mht_A* 9mht_A* 2zcj_A* 2z6u_A* 2z6q_A* ...
Probab=94.43  E-value=0.1  Score=29.66  Aligned_cols=73  Identities=21%  Similarity=0.185  Sum_probs=54.6

Q ss_pred             CCCEEEEECCCCCHHHHHHHHCCCCEEEEECCCCCCHHHHHHHHHHHHCCCCCCHHHHCCCCHHHHCCCCCCEEEEECCC
Q ss_conf             99879997589882346775023525998425543036887875322001220000000143155213322201120232
Q gi|254780398|r   47 DGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLP  126 (284)
Q Consensus        47 ~~~~VlEIGpG~G~LT~~Ll~~~~~~v~aiEiD~~~~~~l~~~~~~~~~~~~ii~~Dal~~d~~~~~~~~~~~~vvgNLP  126 (284)
                      ++-.|+|.=+|.|.++..+-+.+.+.+.|+|+|+..++.++..+.+      ..++|+.+++...+.+.   -.++|-.|
T Consensus        10 ~~lr~~~lFsG~GG~~~gl~~aG~~~~~a~e~d~~a~~~~~~N~~~------~~~~Di~~~~~~~~~~~---Dll~gg~P   80 (327)
T 2c7p_A           10 TGLRFIDLFAGLGGFRLALESCGAECVYSNEWDKYAQEVYEMNFGE------KPEGDITQVNEKTIPDH---DILCAGFP   80 (327)
T ss_dssp             TTCEEEEETCTTTHHHHHHHHTTCEEEEEECCCHHHHHHHHHHHSC------CCBSCGGGSCGGGSCCC---SEEEEECC
T ss_pred             CCCEEEEECCCCCHHHHHHHHCCCEEEEEEECCHHHHHHHHHHCCC------CCCCCHHHCCHHHCCCC---CEEEECCC
T ss_conf             9981899680746899999987997999993899999999987799------97575323885147775---67997589


Q ss_pred             HH
Q ss_conf             24
Q gi|254780398|r  127 YN  128 (284)
Q Consensus       127 Yn  128 (284)
                      -+
T Consensus        81 CQ   82 (327)
T 2c7p_A           81 CQ   82 (327)
T ss_dssp             CT
T ss_pred             CC
T ss_conf             87


No 228
>2wa2_A Non-structural protein 5; transferase, S-adenosyl-L- methionine, virion, membrane, flavivirus, N7-methyltransferase, 2'-O-methyltransferase; HET: SAM; 1.80A {Modoc virus} PDB: 2wa1_A*
Probab=94.37  E-value=0.056  Score=31.30  Aligned_cols=44  Identities=23%  Similarity=0.235  Sum_probs=33.8

Q ss_pred             HHHHHHCCCCCCCEEEEECCCCCHHHHHHH-HCCCCEEEEECCCC
Q ss_conf             999997198999879997589882346775-02352599842554
Q gi|254780398|r   37 KKIAESSGSLDGITVIEIGAGPGNLTQMLL-TLGARKVIVIEKDQ   80 (284)
Q Consensus        37 ~~iv~~~~~~~~~~VlEIGpG~G~LT~~Ll-~~~~~~v~aiEiD~   80 (284)
                      ..+.+.-.+.+...|+++|+|+|.-|..++ +.++..|.|+++-.
T Consensus        72 ~~~~ekf~l~~~g~VVDLGas~GGwTqva~~~~ga~~V~avDvG~  116 (276)
T 2wa2_A           72 AWIDERGGVELKGTVVDLGCGRGSWSYYAASQPNVREVKAYTLGT  116 (276)
T ss_dssp             HHHHHTTSCCCCEEEEEESCTTCHHHHHHHTSTTEEEEEEECCCC
T ss_pred             HHHHHHCCCCCCCEEEECCCCCCCHHHHHHHHCCCCEEEEEECCC
T ss_conf             999983797768848980778870999998764885799998278


No 229
>3m6w_A RRNA methylase; rRNA methyltransferase, 5-methylcytidine, RSMF, adoMet, MULT specific, methyltransferase, transferase; HET: CXM SAM; 1.30A {Thermus thermophilus HB8} PDB: 3m6v_A* 3m6u_A* 3m6x_A*
Probab=94.25  E-value=0.066  Score=30.85  Aligned_cols=81  Identities=17%  Similarity=0.210  Sum_probs=58.9

Q ss_pred             CCCCCCCHHHHHHHHHHCCCCCCCEEEEECCCCCHHHHHHHHC--CCCEEEEECCCCCCHHHHHHHHHHHHCCCCCCHHH
Q ss_conf             8411239899999999719899987999758988234677502--35259984255430368878753220012200000
Q gi|254780398|r   26 GQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTL--GARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDD  103 (284)
Q Consensus        26 GQnFL~d~~i~~~iv~~~~~~~~~~VlEIGpG~G~LT~~Ll~~--~~~~v~aiEiD~~~~~~l~~~~~~~~~~~~ii~~D  103 (284)
                      |.=++.|.+- --.+..+++.+++.||+..+|+|.=|..|++.  +...++|.|+++.-+..|.+.......+..+++.|
T Consensus        81 G~~yiQd~sS-~l~~~~L~~~~g~~VLDlCAAPGGKt~~la~~l~~~g~l~and~~~~R~~~l~~nl~r~g~~~~v~~~d  159 (464)
T 3m6w_A           81 GLYYIQEPSA-QAVGVLLDPKPGERVLDLAAAPGGKTTHLAARMGGKGLLLANEVDGKRVRGLLENVERWGAPLAVTQAP  159 (464)
T ss_dssp             TSEEECCTTT-HHHHHHHCCCTTCEEEESSCTTCHHHHHHHHHTTTCSEEEEECSCHHHHHHHHHHHHHHCCCCEEECSC
T ss_pred             CEEEEECHHH-HHHHHHCCCCCCCEEEEECCCCCCHHHHHHHHHHCCCEEEECCCCHHHHHHHHHHHHHHCCCEEEEECC
T ss_conf             8499948899-999997299999979883658765599999885358357622431788888988888618861687232


Q ss_pred             HCCC
Q ss_conf             0014
Q gi|254780398|r  104 ALKV  107 (284)
Q Consensus       104 al~~  107 (284)
                      ...+
T Consensus       160 ~~~l  163 (464)
T 3m6w_A          160 PRAL  163 (464)
T ss_dssp             HHHH
T ss_pred             HHHH
T ss_conf             2433


No 230
>3me5_A Cytosine-specific methyltransferase; structural genomics, protein structure initiative, NEW YORK structural genomix research consortium; 1.75A {Shigella flexneri 2A} PDB: 3lx6_A
Probab=93.88  E-value=0.064  Score=30.93  Aligned_cols=62  Identities=16%  Similarity=0.244  Sum_probs=50.2

Q ss_pred             CEEEEECCCCCHHHHHHHHCCCCEEEEECCCCCCHHHHHHHHHHHHCCCCCCHHHHCCCCHHH
Q ss_conf             879997589882346775023525998425543036887875322001220000000143155
Q gi|254780398|r   49 ITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEK  111 (284)
Q Consensus        49 ~~VlEIGpG~G~LT~~Ll~~~~~~v~aiEiD~~~~~~l~~~~~~~~~~~~ii~~Dal~~d~~~  111 (284)
                      -.|+|.=+|.|.++..+-+.|.+.|.|+|+|+..++.++.++...+. .+.+++|+.++++..
T Consensus        89 f~vidLFaG~GGl~~G~e~aG~~~v~a~E~d~~A~~ty~~N~~~~p~-~~~~~~Di~~i~~~~  150 (482)
T 3me5_A           89 FRFIDLFAGIGGIRRGFESIGGQCVFTSEWNKHAVRTYKANHYCDPA-THHFNEDIRDITLSH  150 (482)
T ss_dssp             EEEEEESCTTSHHHHHHHTTTEEEEEEECCCHHHHHHHHHHSCCCTT-TCEEESCTHHHHCTT
T ss_pred             CCEEEECCCCCHHHHHHHHCCCEEEEEEECCHHHHHHHHHHCCCCCC-CCEECCCHHHCCHHH
T ss_conf             98899792708799999987995999996899999999986589986-436356476566101


No 231
>3m4x_A NOL1/NOP2/SUN family protein; mtase domain, PUA domain, RRM motif, transferase; 2.28A {Enterococcus faecium}
Probab=93.75  E-value=0.094  Score=29.88  Aligned_cols=79  Identities=13%  Similarity=0.158  Sum_probs=57.8

Q ss_pred             CCCCHHHHHHHHHHCCCCCCCEEEEECCCCCHHHHHHHHC--CCCEEEEECCCCCCHHHHHHHHHHHH-CCCCCCHHHHC
Q ss_conf             1239899999999719899987999758988234677502--35259984255430368878753220-01220000000
Q gi|254780398|r   29 FLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTL--GARKVIVIEKDQQFFPILKDISSQHP-NRLEIIQDDAL  105 (284)
Q Consensus        29 FL~d~~i~~~iv~~~~~~~~~~VlEIGpG~G~LT~~Ll~~--~~~~v~aiEiD~~~~~~l~~~~~~~~-~~~~ii~~Dal  105 (284)
                      ++.|++- --.+..+++.+++.||+.-+|+|.=|..|++.  +...|+|.|+++.=+..|++...... .++.+.+.|+.
T Consensus        88 ~iQd~sS-~l~~~~L~~~pg~~VLDlCAAPGgKt~~la~~l~~~g~l~a~d~~~~R~~~l~~nl~r~g~~n~~v~~~d~~  166 (456)
T 3m4x_A           88 YSQEPSA-MIVGTAAAAKPGEKVLDLCAAPGGKSTQLAAQMKGKGLLVTNEIFPKRAKILSENIERWGVSNAIVTNHAPA  166 (456)
T ss_dssp             EECCTTT-HHHHHHHCCCTTCEEEESSCTTCHHHHHHHHHHTTCSEEEEECSSHHHHHHHHHHHHHHTCSSEEEECCCHH
T ss_pred             EEECHHH-HHHHHHHCCCCCCEEEEECCCCCHHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHCCCCCEEEEECCCC
T ss_conf             9978899-999997099999989881678647999999970089758863064677789987687527874899932544


Q ss_pred             CCC
Q ss_conf             143
Q gi|254780398|r  106 KVD  108 (284)
Q Consensus       106 ~~d  108 (284)
                      ++.
T Consensus       167 ~~~  169 (456)
T 3m4x_A          167 ELV  169 (456)
T ss_dssp             HHH
T ss_pred             CCC
T ss_conf             355


No 232
>2bm8_A Cephalosporin hydroxylase CMCI; cephamycin biosynthesis; 2.5A {Streptomyces clavuligerus} SCOP: c.66.1.50 PDB: 2bm9_A* 2br5_A* 2br4_A* 2br3_A*
Probab=93.66  E-value=0.096  Score=29.84  Aligned_cols=81  Identities=21%  Similarity=0.218  Sum_probs=49.0

Q ss_pred             CCCCCCCCHHHHHHHHHHCCCCCCCEEEEECCCCCHHHHHHHHC----C-CCEEEEECCCCCCHHHHHHHHHHHHCCCCC
Q ss_conf             58411239899999999719899987999758988234677502----3-525998425543036887875322001220
Q gi|254780398|r   25 MGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTL----G-ARKVIVIEKDQQFFPILKDISSQHPNRLEI   99 (284)
Q Consensus        25 lGQnFL~d~~i~~~iv~~~~~~~~~~VlEIGpG~G~LT~~Ll~~----~-~~~v~aiEiD~~~~~~l~~~~~~~~~~~~i   99 (284)
                      +|=-.+.++.-+-.+-+.+.-.+.+.|||||.+.|.=|...+..    + ..+++++|+|.........    ...++++
T Consensus        59 ~G~p~ik~P~d~~~~qeli~~~KPk~ILEIG~~~GgS~~~~a~~l~~~~~~~~I~~iDId~~~~~~~~~----~~~~I~~  134 (236)
T 2bm8_A           59 RGLRMLKDPDTQAVYHDMLWELRPRTIVELGVYNGGSLAWFRDLTKIMGIDCQVIGIDRDLSRCQIPAS----DMENITL  134 (236)
T ss_dssp             TTEECCSCHHHHHHHHHHHHHHCCSEEEEECCTTSHHHHHHHHHHHHTTCCCEEEEEESCCTTCCCCGG----GCTTEEE
T ss_pred             CCEECCCCHHHHHHHHHHHHHHCCCEEEEEECCCCHHHHHHHHHHHHCCCCCEEEEECCCHHHHHHHHC----CCCCCEE
T ss_conf             784031598899999999998597989997388082599999999745788459973366566554431----4666379


Q ss_pred             CHHHHCCCCH
Q ss_conf             0000001431
Q gi|254780398|r  100 IQDDALKVDF  109 (284)
Q Consensus       100 i~~Dal~~d~  109 (284)
                      +.+|......
T Consensus       135 ~~gds~d~~~  144 (236)
T 2bm8_A          135 HQGDCSDLTT  144 (236)
T ss_dssp             EECCSSCSGG
T ss_pred             EEECCCCHHH
T ss_conf             9922521889


No 233
>2dul_A N(2),N(2)-dimethylguanosine tRNA methyltransferase; tRNA modification enzyme, guanine 26, N(2),N(2)- dimethyltransferase; 1.90A {Pyrococcus horikoshii} SCOP: c.66.1.58 PDB: 2ejt_A* 2eju_A* 2ytz_A*
Probab=93.55  E-value=0.11  Score=29.41  Aligned_cols=89  Identities=16%  Similarity=0.117  Sum_probs=61.9

Q ss_pred             CCCCEEEEECCCCCHHHHH-HHHCCCCEEEEECCCCCCHHHHHHHHHHHH----------------CCCCCCHHHHCCCC
Q ss_conf             9998799975898823467-750235259984255430368878753220----------------01220000000143
Q gi|254780398|r   46 LDGITVIEIGAGPGNLTQM-LLTLGARKVIVIEKDQQFFPILKDISSQHP----------------NRLEIIQDDALKVD  108 (284)
Q Consensus        46 ~~~~~VlEIGpG~G~LT~~-Ll~~~~~~v~aiEiD~~~~~~l~~~~~~~~----------------~~~~ii~~Dal~~d  108 (284)
                      ..+..|||..+|.|..... ..+.++.+|++.|+|+..++.++++...+.                +++.+.++|+...-
T Consensus        46 ~~~~~iLD~~sasG~r~iRya~E~~~~~V~~nDi~~~A~~~i~~N~~~N~~~~~~~~~~~~~~~~~~~~~~~~~Da~~~~  125 (378)
T 2dul_A           46 LNPKIVLDALSATGIRGIRFALETPAEEVWLNDISEDAYELMKRNVMLNFDGELRESKGRAILKGEKTIVINHDDANRLM  125 (378)
T ss_dssp             HCCSEEEESSCTTSHHHHHHHHHSSCSEEEEEESCHHHHHHHHHHHHHHCCSCCEECSSEEEEESSSEEEEEESCHHHHH
T ss_pred             HCCCEEEECCCCCHHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCEEEEECCCHHHHH
T ss_conf             29998999788722999999985899889999699899999999999708653343334332245543675211278898


Q ss_pred             HHHHCCCCCCEEEEECCCHHHHHHHHHHHH
Q ss_conf             155213322201120232246788999998
Q gi|254780398|r  109 FEKFFNISSPIRIIANLPYNIGTRLLFNWI  138 (284)
Q Consensus       109 ~~~~~~~~~~~~vvgNLPYnIss~Il~~ll  138 (284)
                      .    .....+.+|-==||.-.++.+..-+
T Consensus       126 ~----~~~~~~DvIDiDPfGsp~pfldsA~  151 (378)
T 2dul_A          126 A----ERHRYFHFIDLDPFGSPMEFLDTAL  151 (378)
T ss_dssp             H----HSTTCEEEEEECCSSCCHHHHHHHH
T ss_pred             H----HCCCCCCEECCCCCCCHHHHHHHHH
T ss_conf             7----4478774331389998189999999


No 234
>3dou_A Ribosomal RNA large subunit methyltransferase J; cell division, structural genomics, protein structure initiative, PSI; HET: SAM; 1.45A {Thermoplasma volcanium}
Probab=93.54  E-value=0.099  Score=29.73  Aligned_cols=54  Identities=35%  Similarity=0.522  Sum_probs=40.5

Q ss_pred             CCCCCEEEEECCCCCHHHHHHHHCCCCEEEEECCCCCCHHHHHHHHHHHHCCCCCCHHHHCCCCH
Q ss_conf             89998799975898823467750235259984255430368878753220012200000001431
Q gi|254780398|r   45 SLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDF  109 (284)
Q Consensus        45 ~~~~~~VlEIGpG~G~LT~~Ll~~~~~~v~aiEiD~~~~~~l~~~~~~~~~~~~ii~~Dal~~d~  109 (284)
                      +.+++.||++|++||+-|+.+.+.. ..+++++..+-         ...+ .+..++||+.+-+.
T Consensus        23 ~k~~~~vlDLg~aPGgw~q~~~~~~-~~v~~vd~~~~---------~~~~-~v~~~~gD~~~~~~   76 (191)
T 3dou_A           23 VRKGDAVIEIGSSPGGWTQVLNSLA-RKIISIDLQEM---------EEIA-GVRFIRCDIFKETI   76 (191)
T ss_dssp             SCTTCEEEEESCTTCHHHHHHTTTC-SEEEEEESSCC---------CCCT-TCEEEECCTTSSSH
T ss_pred             CCCCCEEEEEEECCCCCEEEEEECC-CCEEEEECCCC---------CCCC-CEEEECCCCCCHHH
T ss_conf             6799879984102980648766126-62265504556---------5667-81785255542568


No 235
>1kyz_A COMT, caffeic acid 3-O-methyltransferase; lignin, ferulic acid, methylation; HET: SAH FER; 2.20A {Medicago sativa} SCOP: a.4.5.29 c.66.1.12 PDB: 1kyw_A*
Probab=93.44  E-value=0.18  Score=28.17  Aligned_cols=96  Identities=18%  Similarity=0.173  Sum_probs=53.5

Q ss_pred             HHHHHHCCC-CCCCEEEEECCCCCHHHHHHHHCCCC-EEEEECCCCCCHHHHHHHHHHHHCCCCCCHHHHCCCCHHHHCC
Q ss_conf             999997198-99987999758988234677502352-5998425543036887875322001220000000143155213
Q gi|254780398|r   37 KKIAESSGS-LDGITVIEIGAGPGNLTQMLLTLGAR-KVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFN  114 (284)
Q Consensus        37 ~~iv~~~~~-~~~~~VlEIGpG~G~LT~~Ll~~~~~-~v~aiEiD~~~~~~l~~~~~~~~~~~~ii~~Dal~~d~~~~~~  114 (284)
                      ..++...+. .....|++||+|.|..+..++++.|. +++.++.-+.    ....  ....+++.+.+|+.+- ++.. +
T Consensus       189 ~~~~~~~~~~~~~~~vlDvGgG~G~~~~~l~~~~P~l~~~~~Dlp~v----~~~~--~~~~r~~~~~~d~~~~-~p~~-D  260 (365)
T 1kyz_A          189 KKILETYTGFEGLKSLVDVGGGTGAVINTIVSKYPTIKGINFDLPHV----IEDA--PSYPGVEHVGGDMFVS-IPKA-D  260 (365)
T ss_dssp             HHHHHHCCTTSSCSEEEEETCTTSHHHHHHHHHCTTSEEEEEECTTT----TTTC--CCCTTEEEEECCTTTC-CCCC-S
T ss_pred             HHHHHHCCCCCCCEEEEEECCCCHHHHHHHHHHCCCCEEEECCCHHH----HHHC--CCCCCEEEECCCCCCC-CCCC-C
T ss_conf             99997577434871799825897389888998799806997448176----5430--3477668961554567-8876-4


Q ss_pred             CCCCEEEEECCCHHHHHHHHHHHHHH
Q ss_conf             32220112023224678899999852
Q gi|254780398|r  115 ISSPIRIIANLPYNIGTRLLFNWISA  140 (284)
Q Consensus       115 ~~~~~~vvgNLPYnIss~Il~~ll~~  140 (284)
                      .---..++.+.|=.-...||.++...
T Consensus       261 ~~~~~~~lh~~~~~~~~~iL~~~~~a  286 (365)
T 1kyz_A          261 AVFMKWICHDWSDEHCLKFLKNCYEA  286 (365)
T ss_dssp             CEECSSSSTTSCHHHHHHHHHHHHHH
T ss_pred             EEEEEEEEECCCHHHHHHHHHHHHHH
T ss_conf             58888542037678999999999996


No 236
>3gcz_A Polyprotein; flavivirus, RNA capping, methyltransferase, viral enzyme structure, ATP-binding, nucleotide-binding; HET: SAM; 1.70A {Yokose virus}
Probab=93.12  E-value=0.13  Score=28.94  Aligned_cols=43  Identities=16%  Similarity=0.217  Sum_probs=32.8

Q ss_pred             HHHHHHCCCCCCCEEEEECCCCCHHHHHHH-HCCCCEEEEECCC
Q ss_conf             999997198999879997589882346775-0235259984255
Q gi|254780398|r   37 KKIAESSGSLDGITVIEIGAGPGNLTQMLL-TLGARKVIVIEKD   79 (284)
Q Consensus        37 ~~iv~~~~~~~~~~VlEIGpG~G~LT~~Ll-~~~~~~v~aiEiD   79 (284)
                      ..+.+.-.+.+...|+++||++|.-|..++ +.++..|.|+++-
T Consensus        80 ~~~~ekf~l~p~g~VVDLGaapGGWSqva~~~~g~~~V~gvDvG  123 (282)
T 3gcz_A           80 RWMEERGYVKPTGIVVDLGCGRGGWSYYAASLKNVKKVMAFTLG  123 (282)
T ss_dssp             HHHHHTTSCCCCEEEEEETCTTCHHHHHHHTSTTEEEEEEECCC
T ss_pred             HHHHHHCCCCCCCEEEECCCCCCCHHHHHHHHCCCCEEEEEEEC
T ss_conf             99998468575883887377898489999875388679999817


No 237
>1fp1_D Isoliquiritigenin 2'-O-methyltransferase; protein-substrate, protein-product complex; HET: SAH HCC; 1.82A {Medicago sativa} SCOP: a.4.5.29 c.66.1.12 PDB: 1fpq_A*
Probab=92.65  E-value=0.14  Score=28.84  Aligned_cols=65  Identities=15%  Similarity=0.281  Sum_probs=42.5

Q ss_pred             HHHHHHCCCC-CCCEEEEECCCCCHHHHHHHHCCCCEEEEECCCCCCHHHHHHHHHHHHCCCCCCHHHHCC
Q ss_conf             9999971989-998799975898823467750235259984255430368878753220012200000001
Q gi|254780398|r   37 KKIAESSGSL-DGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALK  106 (284)
Q Consensus        37 ~~iv~~~~~~-~~~~VlEIGpG~G~LT~~Ll~~~~~~v~aiEiD~~~~~~l~~~~~~~~~~~~ii~~Dal~  106 (284)
                      ..++...+.. ....|++||+|.|..+..++++.+. +.++-.|..  +.....  ...++++++.+|+.+
T Consensus       198 ~~~~~~~~~~~~~~~vlDvGgG~G~~~~~l~~~~P~-l~~~~~Dlp--~vi~~~--~~~~rv~~~~gD~~~  263 (372)
T 1fp1_D          198 KRMLEIYTGFEGISTLVDVGGGSGRNLELIISKYPL-IKGINFDLP--QVIENA--PPLSGIEHVGGDMFA  263 (372)
T ss_dssp             HHHHHHCCTTTTCSEEEEETCTTSHHHHHHHHHCTT-CEEEEEECH--HHHTTC--CCCTTEEEEECCTTT
T ss_pred             HHHHHHCCCCCCCCEEEEECCCCHHHHHHHHHHCCC-CEEEEEECH--HHHHHC--CCCCCCEEECCCCCC
T ss_conf             999986564347867998079841899999997899-749997167--877641--356772796675213


No 238
>1xdz_A Methyltransferase GIDB; MCSG, protein structure initiative, structural genomics, methyltransferase fold, PSI; 1.60A {Bacillus subtilis} SCOP: c.66.1.20
Probab=92.34  E-value=0.11  Score=29.52  Aligned_cols=63  Identities=16%  Similarity=0.183  Sum_probs=47.0

Q ss_pred             CCCCEEEEECCCCCHHHHHHHHCCCC-EEEEECCCCCCHHHHHHHHHHHH-CCCCCCHHHHCCCC
Q ss_conf             99987999758988234677502352-59984255430368878753220-01220000000143
Q gi|254780398|r   46 LDGITVIEIGAGPGNLTQMLLTLGAR-KVIVIEKDQQFFPILKDISSQHP-NRLEIIQDDALKVD  108 (284)
Q Consensus        46 ~~~~~VlEIGpG~G~LT~~Ll~~~~~-~v~aiEiD~~~~~~l~~~~~~~~-~~~~ii~~Dal~~d  108 (284)
                      .....+++||.|.|.--..|+-..+. +++.+|...+=+..|+....... .+++++++.+-.+.
T Consensus        69 ~~~~~ilDiGSGaGfPGi~LaI~~p~~~v~Lves~~KK~~FL~~v~~~L~L~nv~v~~~R~E~~~  133 (240)
T 1xdz_A           69 NQVNTICDVGAGAGFPSLPIKICFPHLHVTIVDSLNKRITFLEKLSEALQLENTTFCHDRAETFG  133 (240)
T ss_dssp             GGCCEEEEECSSSCTTHHHHHHHCTTCEEEEEESCHHHHHHHHHHHHHHTCSSEEEEESCHHHHT
T ss_pred             CCCCEEEEECCCCCCHHHHHHHHCCCCCCEEEECHHHHHHHHHHHHHHHCCCCCEEEEEHHHHHC
T ss_conf             56886987259998278999986787541887556877899999999838887378730465503


No 239
>3g7u_A Cytosine-specific methyltransferase; DNA-binding, NAD-binding, structural genomics, protein structure initiative, PSI; 1.75A {Escherichia coli O157}
Probab=92.23  E-value=0.23  Score=27.51  Aligned_cols=76  Identities=20%  Similarity=0.154  Sum_probs=53.8

Q ss_pred             CEEEEECCCCCHHHHHHHHCCCCEEEEECCCCCCHHHHHHHHHHHHCCCCCCHHHHCCCCHHHHCCC---CC-CEEEEEC
Q ss_conf             8799975898823467750235259984255430368878753220012200000001431552133---22-2011202
Q gi|254780398|r   49 ITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNI---SS-PIRIIAN  124 (284)
Q Consensus        49 ~~VlEIGpG~G~LT~~Ll~~~~~~v~aiEiD~~~~~~l~~~~~~~~~~~~ii~~Dal~~d~~~~~~~---~~-~~~vvgN  124 (284)
                      -+|+|.=+|.|.++..+-+.+.+.+.|+|+|+..++..+.++..    -..+++|+-+++...+...   .. --.++|-
T Consensus         3 l~vidlFsG~GG~~~g~~~aG~~~~~a~e~d~~a~~~y~~N~~~----~~~~~~di~~~~~~~~~~~~~~~~~vDvl~gg   78 (376)
T 3g7u_A            3 LNVIDLFSGVGGLSLGAARAGFDVKMAVEIDQHAINTHAINFPR----SLHVQEDVSLLNAEIIKGFFKNDMPIDGIIGG   78 (376)
T ss_dssp             CEEEEETCTTSHHHHHHHHHTCEEEEEECSCHHHHHHHHHHCTT----SEEECCCGGGCCHHHHHHHHCSCCCCCEEEEC
T ss_pred             CEEEEECCCCCHHHHHHHHCCCEEEEEEECCHHHHHHHHHHCCC----CCCCCCCHHHCCHHHHHHHHCCCCCCCEEEEC
T ss_conf             70999482846899999987993999997899999999988799----97358853348999975540258887779968


Q ss_pred             CCHH
Q ss_conf             3224
Q gi|254780398|r  125 LPYN  128 (284)
Q Consensus       125 LPYn  128 (284)
                      .|-+
T Consensus        79 pPCQ   82 (376)
T 3g7u_A           79 PPCQ   82 (376)
T ss_dssp             CCCC
T ss_pred             CCCC
T ss_conf             8988


No 240
>2py6_A Methyltransferase FKBM; YP_546752.1, structural genomics, joint center for structural genomics, JCSG; 2.15A {Methylobacillus flagellatus KT} SCOP: c.66.1.56
Probab=92.22  E-value=0.25  Score=27.22  Aligned_cols=50  Identities=20%  Similarity=0.253  Sum_probs=38.9

Q ss_pred             CCCCCCEEEEECCCCCHHHHHHHHC---CCCEEEEECCCCCCHHHHHHHHHHH
Q ss_conf             9899987999758988234677502---3525998425543036887875322
Q gi|254780398|r   44 GSLDGITVIEIGAGPGNLTQMLLTL---GARKVIVIEKDQQFFPILKDISSQH   93 (284)
Q Consensus        44 ~~~~~~~VlEIGpG~G~LT~~Ll~~---~~~~v~aiEiD~~~~~~l~~~~~~~   93 (284)
                      .+.+++.+++||+-.|.-+..+++.   ...+|+|+|-++..++.|++....+
T Consensus       223 ~l~~nevfIDVGAniG~~s~~f~~~~~~~~~kV~AFEPnp~n~~~L~~Ni~~n  275 (409)
T 2py6_A          223 RFSDSEKMVDCGASIGESLAGLIGVTKGKFERVWMIEPDRINLQTLQNVLRRY  275 (409)
T ss_dssp             CCCSSCEEEEETCTTSHHHHHHHHHHTSCCSEEEEECCCHHHHHHHHHHHHHT
T ss_pred             CCCCCCEEEECCCCCCHHHHHHHHHCCCCCCEEEEEECCHHHHHHHHHHHHHC
T ss_conf             77899889998858888899999966899998999948789999999999864


No 241
>2zkq_m 40S ribosomal protein S18E; protein-RNA complex, 40S ribosomal subunit, ribosomal protein/RNA complex; 8.70A {Canis familiaris} PDB: 1s1h_M 3jyv_M*
Probab=90.80  E-value=0.34  Score=26.39  Aligned_cols=48  Identities=21%  Similarity=0.418  Sum_probs=38.3

Q ss_pred             CCHHHHHHHHHCCC------HHHHHHCCCCCCCCHHCCCHHHHHHHHHHHHHCC
Q ss_conf             31389998763181------7899978777465712089999999999986364
Q gi|254780398|r  233 RRKTLRQSLKRLGG------ENLLHQAGIETNLRAENLSIEDFCRITNILTDNQ  280 (284)
Q Consensus       233 RRK~l~~~L~~~~~------~~~l~~~~i~~~~R~e~Ls~~~~~~L~~~l~~~~  280 (284)
                      ..|.+.-+|..++.      ..+++.+||+++.|+.+|+.+|.-+|.+.+++..
T Consensus        22 g~K~v~~aLt~I~GIG~~~A~~Ic~~lgI~~~~kvg~Lt~~ql~kl~~~I~~~~   75 (152)
T 2zkq_m           22 GRRKIAFAITAIKGVGRRYAHVVLRKADIDLTKRAGELTEDEVERVITIMQNPR   75 (152)
T ss_dssp             CSSBHHHHGGGSTTCCHHHHHHHHHHHTCCTTSBTTTSCHHHHHHHHHHHHTTC
T ss_pred             CCCEEEEEEECCCCCCHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHHH
T ss_conf             997887650021065899999999993899543015199999999999985000


No 242
>1zg3_A Isoflavanone 4'-O-methyltransferase; rossman fold, plant protein; HET: 2HI SAH; 2.35A {Medicago truncatula} PDB: 1zga_A* 1zhf_A* 1zgj_A*
Probab=90.76  E-value=0.2  Score=27.87  Aligned_cols=82  Identities=15%  Similarity=0.277  Sum_probs=49.1

Q ss_pred             CCCCEEEEECCCCCHHHHHHHHCCCC-EEEEECCCCCCHHHHHHHHHHHHCCCCCCHHHHCCCCHHHHCCCCCCEEEEEC
Q ss_conf             99987999758988234677502352-59984255430368878753220012200000001431552133222011202
Q gi|254780398|r   46 LDGITVIEIGAGPGNLTQMLLTLGAR-KVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIAN  124 (284)
Q Consensus        46 ~~~~~VlEIGpG~G~LT~~Ll~~~~~-~v~aiEiD~~~~~~l~~~~~~~~~~~~ii~~Dal~~d~~~~~~~~~~~~vvgN  124 (284)
                      .....|++||+|.|.++..++++.|. +++..+.  .  +.+.. ... ..+++++.||+++- .+     +....++.+
T Consensus       192 ~~~~~vvDvGGG~G~~~~~l~~~~P~l~~~v~Dl--p--~vi~~-a~~-~~ri~~~~gDff~~-~p-----~~D~~~l~~  259 (358)
T 1zg3_A          192 EGLESLVDVGGGTGGVTKLIHEIFPHLKCTVFDQ--P--QVVGN-LTG-NENLNFVGGDMFKS-IP-----SADAVLLKW  259 (358)
T ss_dssp             HTCSEEEEETCTTSHHHHHHHHHCTTSEEEEEEC--H--HHHSS-CCC-CSSEEEEECCTTTC-CC-----CCSEEEEES
T ss_pred             CCCCEEEEECCCCHHHHHHHHHHCCCCCEEEECC--H--HHHHC-CCC-CCCEEEECCCCCCC-CC-----CCCEEEEEE
T ss_conf             4875699808985399999998689976278417--7--88745-476-77279971776677-88-----867799861


Q ss_pred             CCHHHHH----HHHHHHHH
Q ss_conf             3224678----89999985
Q gi|254780398|r  125 LPYNIGT----RLLFNWIS  139 (284)
Q Consensus       125 LPYnIss----~Il~~ll~  139 (284)
                      +=.+-+-    .||.++..
T Consensus       260 vlhd~~d~~~~~iL~~~~~  278 (358)
T 1zg3_A          260 VLHDWNDEQSLKILKNSKE  278 (358)
T ss_dssp             CGGGSCHHHHHHHHHHHHH
T ss_pred             CCCCCCHHHHHHHHHHHHH
T ss_conf             2356766899999999999


No 243
>1g60_A Adenine-specific methyltransferase MBOIIA; structural genomics, DNA methylation, S- adenosylmethionine, PSI, protein structure initiative; HET: SAM; 1.74A {Moraxella bovis} SCOP: c.66.1.11
Probab=90.36  E-value=0.69  Score=24.49  Aligned_cols=30  Identities=23%  Similarity=0.373  Sum_probs=12.5

Q ss_pred             CCHHHHCCCCHHHHCCCCCCEEEEECCCHHHH
Q ss_conf             00000001431552133222011202322467
Q gi|254780398|r   99 IIQDDALKVDFEKFFNISSPIRIIANLPYNIG  130 (284)
Q Consensus        99 ii~~Dal~~d~~~~~~~~~~~~vvgNLPYnIs  130 (284)
                      |++||.+++ +..+.+.... -|+.-.||+++
T Consensus         7 i~~gD~l~~-l~~l~d~sVD-lIitdPPY~~~   36 (260)
T 1g60_A            7 IHQMNCFDF-LDQVENKSVQ-LAVIDPPYNLS   36 (260)
T ss_dssp             EEECCHHHH-HHHSCTTCEE-EEEECCCCSSC
T ss_pred             EEECHHHHH-HHHCCCCCCC-EEEECCCCCCC
T ss_conf             771319999-8538678658-79989998887


No 244
>1fp2_A Isoflavone O-methytransferase; protein-product complex; HET: SAH HMO; 1.40A {Medicago sativa} SCOP: a.4.5.29 c.66.1.12 PDB: 1fpx_A* 2qyo_A*
Probab=90.25  E-value=0.94  Score=23.67  Aligned_cols=82  Identities=16%  Similarity=0.239  Sum_probs=49.4

Q ss_pred             CCCCEEEEECCCCCHHHHHHHHCCCC-EEEEECCCCCCHHHHHHHHHHHHCCCCCCHHHHCCCCHHHHCCCCCCEEEEEC
Q ss_conf             99987999758988234677502352-59984255430368878753220012200000001431552133222011202
Q gi|254780398|r   46 LDGITVIEIGAGPGNLTQMLLTLGAR-KVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIAN  124 (284)
Q Consensus        46 ~~~~~VlEIGpG~G~LT~~Ll~~~~~-~v~aiEiD~~~~~~l~~~~~~~~~~~~ii~~Dal~~d~~~~~~~~~~~~vvgN  124 (284)
                      .....|++||+|.|.++..++++.|+ +++..+..    +...+ .. ...++.++.+|+.+...      +....++.+
T Consensus       187 ~~~~~vlDvGGG~G~~~~~l~~~~P~l~~~v~Dlp----~v~~~-~~-~~~~~~~~~~~~~~~~p------~ad~~~l~~  254 (352)
T 1fp2_A          187 DGLESIVDVGGGTGTTAKIICETFPKLKCIVFDRP----QVVEN-LS-GSNNLTYVGGDMFTSIP------NADAVLLKY  254 (352)
T ss_dssp             TTCSEEEEETCTTSHHHHHHHHHCTTCEEEEEECH----HHHTT-CC-CBTTEEEEECCTTTCCC------CCSEEEEES
T ss_pred             CCCEEEEEECCCCCHHHHHHHHHCCCCEEEEEECC----HHHHH-HC-CCCCEEEECCCCCCCCC------CCCEEEEEE
T ss_conf             68718986058861889999975899759994170----44144-31-46746985364335798------541788985


Q ss_pred             CCHH----HHHHHHHHHHH
Q ss_conf             3224----67889999985
Q gi|254780398|r  125 LPYN----IGTRLLFNWIS  139 (284)
Q Consensus       125 LPYn----Iss~Il~~ll~  139 (284)
                      +=++    -...|+.++..
T Consensus       255 vlh~~~d~~~~~iL~~i~~  273 (352)
T 1fp2_A          255 ILHNWTDKDCLRILKKCKE  273 (352)
T ss_dssp             CGGGSCHHHHHHHHHHHHH
T ss_pred             EECCCCHHHHHHHHHHHHH
T ss_conf             2025887899999999998


No 245
>1ej0_A FTSJ; methyltransferase, adoMet, adenosyl methionine, heat shock proteins, 23S ribosomal RNA; HET: SAM; 1.50A {Escherichia coli} SCOP: c.66.1.2 PDB: 1eiz_A*
Probab=89.03  E-value=0.37  Score=26.18  Aligned_cols=77  Identities=19%  Similarity=0.253  Sum_probs=44.5

Q ss_pred             CCCCCEEEEECCCCCHHHHHHHHCC--CCEEEEECCCCCCHHHHHHHHHHHHCCCCCCHHHHCCCCHHHHC----CCCCC
Q ss_conf             8999879997589882346775023--52599842554303688787532200122000000014315521----33222
Q gi|254780398|r   45 SLDGITVIEIGAGPGNLTQMLLTLG--ARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFF----NISSP  118 (284)
Q Consensus        45 ~~~~~~VlEIGpG~G~LT~~Ll~~~--~~~v~aiEiD~~~~~~l~~~~~~~~~~~~ii~~Dal~~d~~~~~----~~~~~  118 (284)
                      +.+++.|+++|++||+-|+.+++..  ...++++++-+.         ...+ ....++||+.+.+.....    ....-
T Consensus        20 ~~~~~~vlDLg~aPGgw~q~~~~~~~~~~~v~~vd~~~~---------~~i~-~~~~~~gd~~~~~~~~~~~~~~~~~~~   89 (180)
T 1ej0_A           20 FKPGMTVVDLGAAPGGWSQYVVTQIGGKGRIIACDLLPM---------DPIV-GVDFLQGDFRDELVMKALLERVGDSKV   89 (180)
T ss_dssp             CCTTCEEEEESCTTCHHHHHHHHHHCTTCEEEEEESSCC---------CCCT-TEEEEESCTTSHHHHHHHHHHHTTCCE
T ss_pred             CCCCCEEEEEECCCCCCEEEEEEECCCCCEEEEEECCCC---------CCCC-CCEEECCCCHHHHHHHHHHHHCCCCCC
T ss_conf             678986999732589642898875289840899745646---------5568-967851550023456655432246542


Q ss_pred             EEEEECCCHHHHH
Q ss_conf             0112023224678
Q gi|254780398|r  119 IRIIANLPYNIGT  131 (284)
Q Consensus       119 ~~vvgNLPYnIss  131 (284)
                      --|++-.--|.|.
T Consensus        90 DlVlSD~ap~~sg  102 (180)
T 1ej0_A           90 QVVMSDMAPNMSG  102 (180)
T ss_dssp             EEEEECCCCCCCS
T ss_pred             CEEECCCCCCCCC
T ss_conf             4885235777678


No 246
>2vqe_M 30S ribosomal protein S13, 30S ribosomal protein S6; tRNA-binding, rRNA-binding, metal-binding, zinc-finger, translation; HET: TM2 PAR; 2.5A {Thermus thermophilus} SCOP: a.156.1.1 PDB: 1gix_P* 1hnw_M* 1hnx_M* 1hnz_M* 1hr0_M 1ibk_M* 1ibl_M* 1ibm_M 1j5e_M 1jgo_P* 1jgp_P* 1jgq_P* 1mj1_P* 1ml5_P* 1n32_M* 1n33_M* 1n34_M 1n36_M 1xmo_M* 1xmq_M* ...
Probab=88.99  E-value=0.35  Score=26.37  Aligned_cols=48  Identities=19%  Similarity=0.369  Sum_probs=38.0

Q ss_pred             CHHHHHHHHHCCC------HHHHHHCCCCCCCCHHCCCHHHHHHHHHHHHHCCC
Q ss_conf             1389998763181------78999787774657120899999999999863646
Q gi|254780398|r  234 RKTLRQSLKRLGG------ENLLHQAGIETNLRAENLSIEDFCRITNILTDNQD  281 (284)
Q Consensus       234 RK~l~~~L~~~~~------~~~l~~~~i~~~~R~e~Ls~~~~~~L~~~l~~~~~  281 (284)
                      .|.+.-+|..++.      ..++..+||+++.|+.+|+.+|+-+|.+.++++-.
T Consensus        12 ~K~v~~aLt~I~GIG~~~A~~Ic~~lGId~~~kvg~Lt~~qi~~l~~~i~~~~~   65 (126)
T 2vqe_M           12 NKRVDVALTYIYGIGKARAKEALEKTGINPATRVKDLTEAEVVRLREYVENTWK   65 (126)
T ss_dssp             SSBHHHHHTTSSSCCSHHHHHHTTTTTCCTTSBGGGCCHHHHHHHHHHHHTTSC
T ss_pred             CCEEEEEECCEECCCHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHCCCC
T ss_conf             978787620434838999999999859796630163999999999999831451


No 247
>2px2_A Genome polyprotein [contains: capsid protein C (core protein); envelope protein M...; methyltransferase, SAH; HET: SAH; 2.00A {Murray valley encephalitis virus} PDB: 2px4_A* 2px5_A* 2pxa_A* 2pxc_A* 2px8_A* 2oy0_A*
Probab=87.35  E-value=0.86  Score=23.90  Aligned_cols=44  Identities=20%  Similarity=0.184  Sum_probs=32.4

Q ss_pred             HHHHHHHCCCCCCCEEEEECCCCCHHHHHHHH-CCCCEEEEECCC
Q ss_conf             99999971989998799975898823467750-235259984255
Q gi|254780398|r   36 LKKIAESSGSLDGITVIEIGAGPGNLTQMLLT-LGARKVIVIEKD   79 (284)
Q Consensus        36 ~~~iv~~~~~~~~~~VlEIGpG~G~LT~~Ll~-~~~~~v~aiEiD   79 (284)
                      +..+.+.-.+.+...|+++|+|+|.-|..++. .++..|.++.+-
T Consensus        62 L~~~~~~~~~~~~~~vvDlG~~~Ggwt~~~~~~~~v~~V~gvdvG  106 (269)
T 2px2_A           62 LRWLVERRFVQPIGKVVDLGCGRGGWSYYAATMKNVQEVRGYTKG  106 (269)
T ss_dssp             HHHHHHTTSCCCCEEEEEETCTTSHHHHHHTTSTTEEEEEEECCC
T ss_pred             HHHHHHHCCCCCCCCEEEECCCCCCHHHHHHHHCCCCEEEEEEEC
T ss_conf             999998378565880898068898289999873377467999945


No 248
>2zig_A TTHA0409, putative modification methylase; methyltransferase, S- adenosylmethionine, structural genomics, NPPSFA; 2.10A {Thermus thermophilus} PDB: 2zie_A* 2zif_A
Probab=85.60  E-value=1.8  Score=21.86  Aligned_cols=30  Identities=23%  Similarity=0.258  Sum_probs=13.8

Q ss_pred             CCHHHHCCCCHHHHCCCCCCEEEEECCCHHHH
Q ss_conf             00000001431552133222011202322467
Q gi|254780398|r   99 IIQDDALKVDFEKFFNISSPIRIIANLPYNIG  130 (284)
Q Consensus        99 ii~~Dal~~d~~~~~~~~~~~~vvgNLPYnIs  130 (284)
                      +++||.+++ +..+.+... --|+.-.|||+.
T Consensus        24 i~~GD~le~-lk~L~d~SV-DLIitDPPYn~~   53 (297)
T 2zig_A           24 LHVGDAREV-LASFPEASV-HLVVTSPPYWTL   53 (297)
T ss_dssp             EEESCHHHH-HTTSCTTCE-EEEEECCCCCCC
T ss_pred             EEECCHHHH-HHHCCCCCC-CEEEECCCCCCC
T ss_conf             994768999-962867775-979989699888


No 249
>3gpu_A DNA glycosylase; DNA glycosylase, DNA repair, damage search, base extrusion; HET: DNA 8OG; 1.62A {Geobacillus stearothermophilus} PDB: 3gpx_A* 3gq3_A* 3go8_A* 2f5n_A 2f5o_A 2f5p_A 3gp1_A* 3gq4_A* 3gpy_A* 3gq5_A* 3gpp_A* 2f5q_A* 2f5s_A* 1l1z_A* 1l1t_A* 1l2b_A* 1l2c_A* 1l2d_A* 1r2z_A* 1r2y_A* ...
Probab=83.94  E-value=1.1  Score=23.17  Aligned_cols=53  Identities=21%  Similarity=0.235  Sum_probs=41.2

Q ss_pred             HHHHHCCCCHHHHHHHHH---------CCCHHHHHHCCCCCCCCHHCCCHHHHHHHHHHHHH
Q ss_conf             999972731389998763---------18178999787774657120899999999999863
Q gi|254780398|r  226 TQEAFGKRRKTLRQSLKR---------LGGENLLHQAGIETNLRAENLSIEDFCRITNILTD  278 (284)
Q Consensus       226 ~~~~F~~RRK~l~~~L~~---------~~~~~~l~~~~i~~~~R~e~Ls~~~~~~L~~~l~~  278 (284)
                      ....+..++++++..|..         ++..++|-.++|+|..++.+|+.+|+.+|++.+..
T Consensus       147 ~~~~~~~~~~~Ik~~LlDQ~~iaGIGNiya~EiLf~a~I~P~~~~~~Ls~~~~~~L~~~~~~  208 (256)
T 3gpu_A          147 LAERAVKTKRSVKALLLDCTVVAGFGNIYVDESLFRAGILPGRPAASLSSKEIERLHEEMVA  208 (256)
T ss_dssp             HHHHHHTCCSBHHHHHHCTTTSTTCCHHHHHHHHHHHTCCTTSBGGGCCHHHHHHHHHHHHH
T ss_pred             HHHHHHCCCCCHHHHHCCCCEECCCCHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHH
T ss_conf             98887557764556311365133434889999999731483763133899999999999999


No 250
>1boo_A Protein (N-4 cytosine-specific methyltransferase PVU II); type II DNA-(cytosine N4) methyltransferase, amino methylation, selenomethionine; HET: SAH; 2.80A {Proteus vulgaris} SCOP: c.66.1.11
Probab=83.72  E-value=2.1  Score=21.46  Aligned_cols=32  Identities=19%  Similarity=0.347  Sum_probs=15.9

Q ss_pred             CCCCHHHHCCCCHHHHCCCCCCEEEEECCCHHHH
Q ss_conf             2200000001431552133222011202322467
Q gi|254780398|r   97 LEIIQDDALKVDFEKFFNISSPIRIIANLPYNIG  130 (284)
Q Consensus        97 ~~ii~~Dal~~d~~~~~~~~~~~~vvgNLPYnIs  130 (284)
                      -+|++||.+++ +..+.+ ++---|+--.|||+.
T Consensus        15 ~~l~~GD~l~~-l~~L~~-~sVdlIytDPPYn~~   46 (323)
T 1boo_A           15 GSMYIGDSLEL-LESFPE-ESISLVMTSPPFALQ   46 (323)
T ss_dssp             EEEEESCHHHH-GGGSCS-SCEEEEEECCCCSSS
T ss_pred             CEEEECCHHHH-HHHCCC-CCCCEEEECCCCCCC
T ss_conf             86996628999-862704-897989989998577


No 251
>1tdz_A Formamidopyrimidine-DNA glycosylase; DNA repair, FPG, MUTM, FAPY G, hydrolase/DNA complex; HET: FOX; 1.80A {Lactococcus lactis} SCOP: a.156.1.2 b.113.1.1 g.39.1.8 PDB: 1pji_A* 1pm5_A* 1xc8_A* 3c58_A* 1nnj_A 1kfv_A 1pjj_A*
Probab=82.39  E-value=1.5  Score=22.50  Aligned_cols=51  Identities=16%  Similarity=0.206  Sum_probs=40.1

Q ss_pred             HHHCCCCHHHHHHHHH---------CCCHHHHHHCCCCCCCCHHCCCHHHHHHHHHHHHH
Q ss_conf             9972731389998763---------18178999787774657120899999999999863
Q gi|254780398|r  228 EAFGKRRKTLRQSLKR---------LGGENLLHQAGIETNLRAENLSIEDFCRITNILTD  278 (284)
Q Consensus       228 ~~F~~RRK~l~~~L~~---------~~~~~~l~~~~i~~~~R~e~Ls~~~~~~L~~~l~~  278 (284)
                      ..+..+++.++..|-.         ++..++|=.++|+|..++.+|+.+|+.+|++.+.+
T Consensus       148 ~~~~~~~~~Ik~~LlDQ~~iaGIGNiy~~EiLf~a~I~P~~~~~~L~~~e~~~L~~~~~~  207 (272)
T 1tdz_A          148 EKLRKSTKKIKPYLLEQTLVAGLGNIYVDEVLWLAKIHPEKETNQLIESSIHLLHDSIIE  207 (272)
T ss_dssp             HHHHHCCSBHHHHHHTSSSSSCCCHHHHHHHHHHTTCCTTCBGGGCCHHHHHHHHHHHHH
T ss_pred             HHHHHCCCCCCEEEECCCEECCCCHHHHHHHHHHHCCCCCCCHHHCCHHHHHHHHHHHHH
T ss_conf             866420332002675076354444737989988727986767524079999999999999


No 252
>1eg2_A Modification methylase RSRI; rossmann fold, exocyclic amino DNA methyltransferase RSRI, DNA binding, DNA modification, DNA methylation; HET: MTA; 1.75A {Rhodobacter sphaeroides} SCOP: c.66.1.11 PDB: 1nw5_A* 1nw6_A* 1nw7_A* 1nw8_A
Probab=82.37  E-value=2.5  Score=21.01  Aligned_cols=31  Identities=32%  Similarity=0.277  Sum_probs=11.6

Q ss_pred             CCCHHHHCCCCHHHHCCCCCCEEEEECCCHHHH
Q ss_conf             200000001431552133222011202322467
Q gi|254780398|r   98 EIIQDDALKVDFEKFFNISSPIRIIANLPYNIG  130 (284)
Q Consensus        98 ~ii~~Dal~~d~~~~~~~~~~~~vvgNLPYnIs  130 (284)
                      .++.||.+++ +..+.+... --|+--.|||++
T Consensus        41 ~~~~gDcle~-l~~lpd~SV-DLIitDPPYn~~   71 (319)
T 1eg2_A           41 VYDVCDCLDT-LAKLPDDSV-QLIICDPPYNIM   71 (319)
T ss_dssp             EEEECCHHHH-HHTSCTTCE-EEEEECCCSBCC
T ss_pred             EEEECCHHHH-HHHCCCCCC-CEEEECCCCCCC
T ss_conf             6996528999-822868875-579989999887


No 253
>1lss_A TRK system potassium uptake protein TRKA homolog; KTN domain, NAD, RCK domain, potassium transport, potassium channel, KTRA; HET: NAD; 2.30A {Methanocaldococcus jannaschii} SCOP: c.2.1.9
Probab=81.77  E-value=2.6  Score=20.87  Aligned_cols=78  Identities=21%  Similarity=0.217  Sum_probs=46.3

Q ss_pred             CCEEEEECCCC-C-HHHHHHHHCCCCEEEEECCCCCCHHHHHHHHHHHHCCCCCCHHHHCCCCHHHHCCCCCCEEEEECC
Q ss_conf             98799975898-8-234677502352599842554303688787532200122000000014315521332220112023
Q gi|254780398|r   48 GITVIEIGAGP-G-NLTQMLLTLGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANL  125 (284)
Q Consensus        48 ~~~VlEIGpG~-G-~LT~~Ll~~~~~~v~aiEiD~~~~~~l~~~~~~~~~~~~ii~~Dal~~d~~~~~~~~~~~~vvgNL  125 (284)
                      +..|+=+|.|. | .+.+.|.+.+ ..|+.||.|+..++.+.+.+     ...+++||+.+.+.-+-.....--.+++-.
T Consensus         4 ~m~ViI~G~G~~G~~la~~L~~~g-~~v~vId~d~~~~~~~~~~~-----~~~vi~gd~~~~~~L~~a~i~~a~~vi~~t   77 (140)
T 1lss_A            4 GMYIIIAGIGRVGYTLAKSLSEKG-HDIVLIDIDKDICKKASAEI-----DALVINGDCTKIKTLEDAGIEDADMYIAVT   77 (140)
T ss_dssp             -CEEEEECCSHHHHHHHHHHHHTT-CEEEEEESCHHHHHHHHHHC-----SSEEEESCTTSHHHHHHTTTTTCSEEEECC
T ss_pred             CCEEEEECCCHHHHHHHHHHHHCC-CCEEEEEECHHHHHHHHHCC-----CCEEEECCCCHHHHHHHCCCCCCCEEEEEE
T ss_conf             999999998999999999999779-95899850156655445314-----745998876157778745913038899950


Q ss_pred             CHHHHH
Q ss_conf             224678
Q gi|254780398|r  126 PYNIGT  131 (284)
Q Consensus       126 PYnIss  131 (284)
                      |..-..
T Consensus        78 ~~d~~N   83 (140)
T 1lss_A           78 GKEEVN   83 (140)
T ss_dssp             SCHHHH
T ss_pred             CCHHHH
T ss_conf             867778


No 254
>2yui_A Anamorsin; cytokine-induced apoptosis inhibitor 1, ciapin1, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=80.65  E-value=0.16  Score=28.51  Aligned_cols=75  Identities=13%  Similarity=0.143  Sum_probs=46.0

Q ss_pred             CCCCEEEEECCCCCHHHHHHHHCCCCEEEEECCCCCCHHHHHHHHHHHHCCCCCCHHHHCCCCHHHHCCCCCCEEEEECC
Q ss_conf             99987999758988234677502352599842554303688787532200122000000014315521332220112023
Q gi|254780398|r   46 LDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANL  125 (284)
Q Consensus        46 ~~~~~VlEIGpG~G~LT~~Ll~~~~~~v~aiEiD~~~~~~l~~~~~~~~~~~~ii~~Dal~~d~~~~~~~~~~~~vvgNL  125 (284)
                      .++..|+|+|||.|..+..++.+.+ .+.++   +.+++.++++... .+++++.+.|.+..  ..+. .++--.|++|.
T Consensus         3 ~~~~~~~DlGcG~G~~v~~l~~~~~-~vd~~---~~~v~~~~~~~~~-~g~v~v~~~~~l~~--~~~~-~~sfD~v~s~~   74 (182)
T 2yui_A            3 SGSSGMADFGISAGQFVAVVWDKSS-PVEAL---KGLVDKLQALTGN-EGRVSVENIKQLLQ--SAHK-ESSFDIILSGL   74 (182)
T ss_dssp             SSCCCCSSCCCCTTSEEEEEECTTS-CSHHH---HHHHHHHHHHHTT-TSEEEEEETTHHHH--SCCC-TTCBSEEEESC
T ss_pred             CCCCEEEEECCCCCHHHHHHHHCCC-CCCHH---HHHHHHHHHHHCC-CCCEEEEEHHHCCC--CCCC-CCCCCEEEECC
T ss_conf             8887768966899887898985289-93158---9999999997456-88079987000034--7875-45763899823


Q ss_pred             CHH
Q ss_conf             224
Q gi|254780398|r  126 PYN  128 (284)
Q Consensus       126 PYn  128 (284)
                      -.+
T Consensus        75 ~~~   77 (182)
T 2yui_A           75 VPG   77 (182)
T ss_dssp             SSS
T ss_pred             EEC
T ss_conf             233


No 255
>2p41_A Type II methyltransferase; vizier, viral enzymes involved in replication, dengue virus methyltransferase, structural genomics; HET: G1G SAH CIT; 1.80A {Dengue virus 2} SCOP: c.66.1.25 PDB: 2p1d_A* 1l9k_A* 2p3o_A* 2p3q_A* 2p40_A* 2p3l_A* 1r6a_A* 3evg_A*
Probab=79.77  E-value=3.1  Score=20.45  Aligned_cols=42  Identities=21%  Similarity=0.228  Sum_probs=30.5

Q ss_pred             HHHHHHCCCCCCCEEEEECCCCCHHHHHHHHCC-CCEEEEECC
Q ss_conf             999997198999879997589882346775023-525998425
Q gi|254780398|r   37 KKIAESSGSLDGITVIEIGAGPGNLTQMLLTLG-ARKVIVIEK   78 (284)
Q Consensus        37 ~~iv~~~~~~~~~~VlEIGpG~G~LT~~Ll~~~-~~~v~aiEi   78 (284)
                      ..|.+--.+.++..|+++|||+|.-|..++.+. ...|.++.+
T Consensus        72 ~ei~EK~~ikp~g~VVDLGcAPGGWSQvaa~~~~v~~V~G~~i  114 (305)
T 2p41_A           72 RWFVERNLVTPEGKVVDLGCGRGGWSYYCGGLKNVREVKGLTK  114 (305)
T ss_dssp             HHHHHTTSSCCCEEEEEETCTTSHHHHHHHTSTTEEEEEEECC
T ss_pred             HHHHHCCCCCCCCEEEECCCCCCCHHHHHHHHCCCCCEEEEEE
T ss_conf             9999734757698688737689838999986226662168994


No 256
>2oxt_A Nucleoside-2'-O-methyltransferase; flavivirus, viral enzyme, RNA capping, S-adenosyl-L-methionine, viral protein; HET: SAM; 2.90A {Meaban virus}
Probab=79.73  E-value=3.1  Score=20.44  Aligned_cols=43  Identities=14%  Similarity=0.057  Sum_probs=31.1

Q ss_pred             HHHHHHCCCCCCCEEEEECCCCCHHHHHHHHCCC-CEEEEECCC
Q ss_conf             9999971989998799975898823467750235-259984255
Q gi|254780398|r   37 KKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGA-RKVIVIEKD   79 (284)
Q Consensus        37 ~~iv~~~~~~~~~~VlEIGpG~G~LT~~Ll~~~~-~~v~aiEiD   79 (284)
                      ..|.+.-.+.+...|+++|+|+|.-|...+.+.. ..|.++.+-
T Consensus        64 ~~~~e~~~~~~~g~vvDlg~~~Ggws~~~~~~~~v~~V~G~tlG  107 (265)
T 2oxt_A           64 AWMEERGYVELTGRVVDLGCGRGGWSYYAASRPHVMDVRAYTLG  107 (265)
T ss_dssp             HHHHHHTSCCCCEEEEEESCTTSHHHHHHHTSTTEEEEEEECCC
T ss_pred             HHHHHCCCCCCCCEEEEECCCCCCHHHHHHHHCCCCEEEEEEEC
T ss_conf             99997467664882888067887189999763376546778945


No 257
>2g1u_A Hypothetical protein TM1088A; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: AMP; 1.50A {Thermotoga maritima} PDB: 3l4b_A*
Probab=79.27  E-value=1.8  Score=21.95  Aligned_cols=76  Identities=16%  Similarity=0.172  Sum_probs=45.6

Q ss_pred             CCCCCEEEEECCCC--CHHHHHHHHCCCCEEEEECCCCCCHHHHHHHHHHHHCCCCCCHHHHCCCCHHHHCCCCCCEEEE
Q ss_conf             89998799975898--8234677502352599842554303688787532200122000000014315521332220112
Q gi|254780398|r   45 SLDGITVIEIGAGP--GNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRII  122 (284)
Q Consensus        45 ~~~~~~VlEIGpG~--G~LT~~Ll~~~~~~v~aiEiD~~~~~~l~~~~~~~~~~~~ii~~Dal~~d~~~~~~~~~~~~vv  122 (284)
                      ..+.+.|+=+|.|.  -.+.+.|.+.+ ..|+.||.|+..++.+.+.+    + ..+++||+.+-+.-.-.....--.||
T Consensus        16 ~~~~~~IiI~G~g~~G~~ia~~L~~~g-~~vvvId~d~~~~~~l~~~~----~-~~~i~GD~~d~~~L~~a~i~~a~~vI   89 (155)
T 2g1u_A           16 KQKSKYIVIFGCGRLGSLIANLASSSG-HSVVVVDKNEYAFHRLNSEF----S-GFTVVGDAAEFETLKECGMEKADMVF   89 (155)
T ss_dssp             -CCCCEEEEECCSHHHHHHHHHHHHTT-CEEEEEESCGGGGGGSCTTC----C-SEEEESCTTSHHHHHTTTGGGCSEEE
T ss_pred             HHCCCEEEEECCCHHHHHHHHHHHHCC-CEEEEEECCHHHHHHHHCCC----C-CEEEECCCCCHHHHHHCCHHHCCEEE
T ss_conf             415981999899899999999999789-97999946889844312033----4-13697776007888741822468999


Q ss_pred             ECCC
Q ss_conf             0232
Q gi|254780398|r  123 ANLP  126 (284)
Q Consensus       123 gNLP  126 (284)
                      +-.+
T Consensus        90 ~~t~   93 (155)
T 2g1u_A           90 AFTN   93 (155)
T ss_dssp             ECSS
T ss_pred             ECCC
T ss_conf             9149


No 258
>1ee8_A MUTM (FPG) protein; beta sandwich, zinc finger, helix two-turns helix, riken structural genomics/proteomics initiative, RSGI; 1.90A {Thermus thermophilus HB8} SCOP: a.156.1.2 b.113.1.1 g.39.1.8
Probab=77.68  E-value=3.6  Score=20.06  Aligned_cols=52  Identities=17%  Similarity=0.218  Sum_probs=41.3

Q ss_pred             HHHHCCCCHHHHHHHHH---------CCCHHHHHHCCCCCCCCHHCCCHHHHHHHHHHHHH
Q ss_conf             99972731389998763---------18178999787774657120899999999999863
Q gi|254780398|r  227 QEAFGKRRKTLRQSLKR---------LGGENLLHQAGIETNLRAENLSIEDFCRITNILTD  278 (284)
Q Consensus       227 ~~~F~~RRK~l~~~L~~---------~~~~~~l~~~~i~~~~R~e~Ls~~~~~~L~~~l~~  278 (284)
                      ...+..+++.|+..|..         ++-.++|-.++|+|..++.+|+.+|+-+|++.+.+
T Consensus       136 ~~~~~~~~~~Ik~~LlDQ~~iaGIGN~y~~EiLf~a~I~P~~~~~~L~~~e~~~L~~~~~~  196 (266)
T 1ee8_A          136 FRGLKESARPLKALLLDQRLAAGVGNIYADEALFRARLSPFRPARSLTEEEARRLYRALRE  196 (266)
T ss_dssp             HHHHHTCCSBHHHHHHHSSSSTTCCHHHHHHHHHHTTCCSSSBGGGCCHHHHHHHHHHHHH
T ss_pred             HHHHHHCCCHHHHHHCCCCEECCCCHHHHHHHHHHHCCCHHHCCCCCCHHHHHHHHHHHHH
T ss_conf             8887513640657621576122466999999999857980232672899999999999999


No 259
>3a46_A Formamidopyrimidine-DNA glycosylase; helix two turns helix, zinc-LESS finger, hydrolase, THF, glycosidase, lyase, multifunctional enzyme; HET: DNA 3DR; 2.20A {Acanthamoeba polyphaga mimivirus} PDB: 3a45_A* 3a42_A
Probab=76.73  E-value=2.7  Score=20.80  Aligned_cols=47  Identities=15%  Similarity=0.131  Sum_probs=35.3

Q ss_pred             CCCCHHHHHHHH----------HCCCHHHHHHCCCCCCCCHHCCCHHHHHHHHHHHH
Q ss_conf             273138999876----------31817899978777465712089999999999986
Q gi|254780398|r  231 GKRRKTLRQSLK----------RLGGENLLHQAGIETNLRAENLSIEDFCRITNILT  277 (284)
Q Consensus       231 ~~RRK~l~~~L~----------~~~~~~~l~~~~i~~~~R~e~Ls~~~~~~L~~~l~  277 (284)
                      ..+++.+...|-          +++..++|-.++|+|..++.+||.+|+.+|++.+.
T Consensus       151 ~~~~~~ik~~LLdq~~i~aGIGNiya~EiLf~a~I~P~~~~~~Ls~~e~~~L~~~i~  207 (289)
T 3a46_A          151 KKYKQPIVALLMDQKKIGSGLGNYLVAEILYRAKIDPHKLGSNLTDQEIENLWYWIK  207 (289)
T ss_dssp             GGCCSBHHHHHHCSSSSCBCCCHHHHHHHHHHTTBCTTCBGGGCCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHCCCCEECCCCHHHHHHHHHHHHCCHHHHHHHCCHHHHHHHHHHHH
T ss_conf             542022457752466267064089999999985068546667499999999999999


No 260
>3fwz_A Inner membrane protein YBAL; TRKA-N domain, E.coli, structural genomics, PSI-2, protein structure initiative; HET: MSE AMP; 1.79A {Escherichia coli k-12}
Probab=74.46  E-value=4.4  Score=19.53  Aligned_cols=83  Identities=12%  Similarity=0.175  Sum_probs=48.3

Q ss_pred             CCEEEEECCCCCHHHHHHH----HCCCCEEEEECCCCCCHHHHHHHHHHHHCCCCCCHHHHCCCCHHHHCCCCCCEEEEE
Q ss_conf             9879997589882346775----023525998425543036887875322001220000000143155213322201120
Q gi|254780398|r   48 GITVIEIGAGPGNLTQMLL----TLGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIA  123 (284)
Q Consensus        48 ~~~VlEIGpG~G~LT~~Ll----~~~~~~v~aiEiD~~~~~~l~~~~~~~~~~~~ii~~Dal~~d~~~~~~~~~~~~vvg  123 (284)
                      .+.|+=+|  .|.+++.++    +.+ ..+++||.|+..++.+++.      .+.+++||+.+-+.-+-...+.--.||.
T Consensus         7 ~~HviI~G--~g~~g~~l~~~L~~~~-~~vvvId~d~~~~~~~~~~------g~~~i~GD~~~~~~L~~a~i~~a~~vi~   77 (140)
T 3fwz_A            7 CNHALLVG--YGRVGSLLGEKLLASD-IPLVVIETSRTRVDELRER------GVRAVLGNAANEEIMQLAHLECAKWLIL   77 (140)
T ss_dssp             CSCEEEEC--CSHHHHHHHHHHHHTT-CCEEEEESCHHHHHHHHHT------TCEEEESCTTSHHHHHHTTGGGCSEEEE
T ss_pred             CCCEEEEC--CCHHHHHHHHHHHHCC-CCEEEEECCCHHHHHHHHC------CCEEEECCCCCHHHHHHHCHHHHCEEEE
T ss_conf             69999989--6889999999999789-9789998880775015653------9658851589999999727445189999


Q ss_pred             CCCHHHHHHHHHHHHH
Q ss_conf             2322467889999985
Q gi|254780398|r  124 NLPYNIGTRLLFNWIS  139 (284)
Q Consensus       124 NLPYnIss~Il~~ll~  139 (284)
                      -.|-.-++-.+...+.
T Consensus        78 ~~~~d~~n~~~~~~~r   93 (140)
T 3fwz_A           78 TIPNGYEAGEIVASAR   93 (140)
T ss_dssp             CCSCHHHHHHHHHHHH
T ss_pred             CCCCHHHHHHHHHHHH
T ss_conf             8798899999999999


No 261
>1k82_A Formamidopyrimidine-DNA glycosylase; protein-DNA complex, DNA repair, beta sandwich, zinc finger, helix two-turns helix, hydrolase/DNA complex; HET: PED; 2.10A {Escherichia coli} SCOP: a.156.1.2 b.113.1.1 g.39.1.8
Probab=74.39  E-value=3.8  Score=19.92  Aligned_cols=53  Identities=17%  Similarity=0.293  Sum_probs=40.0

Q ss_pred             HHHHHCCCCHHHHHHHHH---------CCCHHHHHHCCCCCCCCHHCCCHHHHHHHHHHHHH
Q ss_conf             999972731389998763---------18178999787774657120899999999999863
Q gi|254780398|r  226 TQEAFGKRRKTLRQSLKR---------LGGENLLHQAGIETNLRAENLSIEDFCRITNILTD  278 (284)
Q Consensus       226 ~~~~F~~RRK~l~~~L~~---------~~~~~~l~~~~i~~~~R~e~Ls~~~~~~L~~~l~~  278 (284)
                      ....+..++..++..|..         ++-.++|=.++|.|..++.+|+.+++.+|++.+..
T Consensus       142 ~~~~~~~~~~~ik~~LlDQ~~iaGIGN~y~~EiLf~a~IhP~~~~~~L~~~e~~~L~~~~~~  203 (268)
T 1k82_A          142 LHQKCAKKKTAIKPWLMDNKLVVGVGNIYASESLFAAGIHPDRLASSLSLAECELLARVIKA  203 (268)
T ss_dssp             HHHHHTTCCSBHHHHHTCTTTCSSCCHHHHHHHHHHHTCCTTSBGGGCCHHHHHHHHHHHHH
T ss_pred             HHHHHHCCCCCCCEEEECCCCCCCCCHHHHHHHHHHHCCCCCCCHHHCCHHHHHHHHHHHHH
T ss_conf             99986066655414886176046675889999998727986686323999999999999999


No 262
>1mu5_A Type II DNA topoisomerase VI subunit B; GHKL ATPase, helix two-turns helix; 2.00A {Sulfolobus shibatae} SCOP: a.156.1.3 d.14.1.3 d.122.1.2 PDB: 1mx0_A* 1z5b_A* 1z5a_A* 1z59_A* 1z5c_A* 2hkj_A*
Probab=73.90  E-value=4.5  Score=19.44  Aligned_cols=109  Identities=18%  Similarity=0.252  Sum_probs=59.3

Q ss_pred             HHHHHHHHHHCCCCCEEEECCCCCCEECCCCCCCEE---EEEECCCCCCCCCCHHHHHHHHHHHHCCCCHHHHHHHHHCC
Q ss_conf             233234543201332012000110000105787578---87301258855347678999999997273138999876318
Q gi|254780398|r  169 PHYGRLSVLTGWRTKATMMFDISPHVFFPSPKVTST---VIHFIPHLNPIPCCLESLKKITQEAFGKRRKTLRQSLKRLG  245 (284)
Q Consensus       169 k~Yg~LSv~~q~~~~v~~~~~V~~~~F~P~PkVdS~---vi~l~pk~~~~~~~~~~~~~~~~~~F~~RRK~l~~~L~~~~  245 (284)
                      .+|=+-+.+++.+..+.+...-.....+++. ++..   ...+.|+  |...+...+..+++..  .+..++..=|.+.+
T Consensus       189 ~eyl~rtAi~nPha~i~~~~p~~e~~~~~r~-~~~lP~~p~eikPH--P~gv~l~~l~~ml~~~--~~~~~l~~FL~~~F  263 (471)
T 1mu5_A          189 YEYIKRTYIITPYAEFIFKDPEGNVTYYPRL-TNKIPKPPQEVKPH--PYGVDREEIKILINNL--KRDYTIKEFLVNEF  263 (471)
T ss_dssp             HHHHHHHHHHCTTCEEEEECTTCCEEEECCC-CCCCCCCCCCCCCC--GGGCCHHHHHHHSTTC--SSCCBHHHHHTTSS
T ss_pred             HHHHHHHHHCCCCEEEEEECCCCCEEEEECC-CCCCCCCCHHCCCC--CCCCCHHHHHHHHHHC--CCCCCHHHHHHHHC
T ss_conf             9999887640887189998699974896241-12378973312688--0020067799999855--46662678888754


Q ss_pred             C-------HHHHHHCCCCCCCCHHCCCHHHHHHHHHHHHHCCCC
Q ss_conf             1-------789997877746571208999999999998636466
Q gi|254780398|r  246 G-------ENLLHQAGIETNLRAENLSIEDFCRITNILTDNQDI  282 (284)
Q Consensus       246 ~-------~~~l~~~~i~~~~R~e~Ls~~~~~~L~~~l~~~~~i  282 (284)
                      +       .++++..+++++.+|.+|+.++..+|.+.+.+.+++
T Consensus       264 s~V~~~~a~~i~~~~g~~~~~~p~~l~~~e~~~l~~a~~~~~~~  307 (471)
T 1mu5_A          264 QSIGDTTADKILELAGLKPNKKVKNLTEEEITRLVETFKKYEDF  307 (471)
T ss_dssp             SSCCHHHHHHHHHHTTCCTTSBGGGCCTTHHHHHHHHHHHCCCC
T ss_pred             CCCCHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHHCCC
T ss_conf             77698999999997499977771449999999999999853046


No 263
>3imf_A Short chain dehydrogenase; structural genomics, infectious diseases, center for structural genomics of infectious diseases, oxidoreductase; HET: MSE; 1.99A {Bacillus anthracis str}
Probab=73.74  E-value=3.3  Score=20.25  Aligned_cols=63  Identities=21%  Similarity=0.307  Sum_probs=46.8

Q ss_pred             CCCCCEEEEECCCCC---HHHHHHHHCCCCEEEEECCCCCCHHHHHHHHHHHHCCCCCCHHHHCCCC
Q ss_conf             899987999758988---2346775023525998425543036887875322001220000000143
Q gi|254780398|r   45 SLDGITVIEIGAGPG---NLTQMLLTLGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVD  108 (284)
Q Consensus        45 ~~~~~~VlEIGpG~G---~LT~~Ll~~~~~~v~aiEiD~~~~~~l~~~~~~~~~~~~ii~~Dal~~d  108 (284)
                      -.+++.+|=.|.+.|   ++.+.+++.++ +|+...+++.-++.+.+.......++..+.+|+.+.+
T Consensus         3 sLk~KvalITGas~GIG~aia~~la~~Ga-~V~i~~r~~~~l~~~~~~l~~~g~~~~~~~~Dv~~~~   68 (257)
T 3imf_A            3 AMKEKVVIITGGSSGMGKGMATRFAKEGA-RVVITGRTKEKLEEAKLEIEQFPGQILTVQMDVRNTD   68 (257)
T ss_dssp             TTTTCEEEETTTTSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHHHCCSTTCEEEEECCTTCHH
T ss_pred             CCCCCEEEEECCCCHHHHHHHHHHHHCCC-EEEEEECCHHHHHHHHHHHHHCCCCEEEEEECCCCHH
T ss_conf             75849899938987899999999998799-8999979889999999999856994899993089999


No 264
>3lkz_A Non-structural protein 5; flavivirus, methyltransferase, inhibitor, P nucleotide-binding, RNA replication, viral protein; HET: SFG; 2.00A {West nile virus}
Probab=71.62  E-value=5.1  Score=19.11  Aligned_cols=43  Identities=23%  Similarity=0.193  Sum_probs=30.9

Q ss_pred             HHHHHHHCCCCCCCEEEEECCCCCHHHHHHHHCC-CCEEEEECC
Q ss_conf             9999997198999879997589882346775023-525998425
Q gi|254780398|r   36 LKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLG-ARKVIVIEK   78 (284)
Q Consensus        36 ~~~iv~~~~~~~~~~VlEIGpG~G~LT~~Ll~~~-~~~v~aiEi   78 (284)
                      +..|.+--.+.+...|+++|||+|.-|...+.+. ...|.++.+
T Consensus        83 L~~i~Ek~~l~p~G~VVDLGcapGGWSqvAa~~~~v~~V~G~tl  126 (321)
T 3lkz_A           83 LRWLVERRFLEPVGKVIDLGCGRGGWCYYMATQKRVQEVRGYTK  126 (321)
T ss_dssp             HHHHHHTTSCCCCEEEEEETCTTCHHHHHHTTCTTEEEEEEECC
T ss_pred             HHHHHHHCCCCCCCEEEECCCCCCCHHHHHHHCCCCCCEEEEEE
T ss_conf             99999805855088688747688718899875336663047994


No 265
>1k3x_A Endonuclease VIII; hydrolase/DNA; HET: BRU PED; 1.25A {Escherichia coli} SCOP: a.156.1.2 b.113.1.1 g.39.1.8 PDB: 1k3w_A* 1q39_A 2ea0_A* 2oq4_A* 1q3c_A 2opf_A* 1q3b_A*
Probab=71.62  E-value=5.1  Score=19.11  Aligned_cols=46  Identities=20%  Similarity=0.303  Sum_probs=36.9

Q ss_pred             CCHHHHHHHH---------HCCCHHHHHHCCCCCCCCHHCCCHHHHHHHHHHHHH
Q ss_conf             3138999876---------318178999787774657120899999999999863
Q gi|254780398|r  233 RRKTLRQSLK---------RLGGENLLHQAGIETNLRAENLSIEDFCRITNILTD  278 (284)
Q Consensus       233 RRK~l~~~L~---------~~~~~~~l~~~~i~~~~R~e~Ls~~~~~~L~~~l~~  278 (284)
                      ++++++..|.         +++..++|-.++|+|..++.+|+.+|+-+|++.+.+
T Consensus       149 ~~~~Ik~~LlDQ~~iaGIGNiya~EiLf~a~I~P~~~~~~Ls~~~~~~L~~~i~~  203 (262)
T 1k3x_A          149 RNRQFAGLLLDQAFLAGLGNYLRVEILWQVGLTGNHKAKDLNAAQLDALAHALLE  203 (262)
T ss_dssp             TTSCHHHHTTCTTTSBTCCHHHHHHHHHHHTCCSSCCGGGSCHHHHHHHHHHHHH
T ss_pred             CCHHHHHHHHCCCCCCCCCHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHH
T ss_conf             0068999984177445656999999998720685450134447789999999999


No 266
>2z1m_A GDP-D-mannose dehydratase; short-chain dehydrogenase/reductase, lyase, structural genomics, NPPSFA; HET: NDP GDP; 2.00A {Aquifex aeolicus VF5} PDB: 2z95_A*
Probab=71.61  E-value=5.1  Score=19.11  Aligned_cols=57  Identities=28%  Similarity=0.383  Sum_probs=35.7

Q ss_pred             CCEEEEECCCCC----HHHHHHHHCCCCEEEEECCCCCCH--HHHHHHHHHHHCCCCCCHHHHCCCC
Q ss_conf             987999758988----234677502352599842554303--6887875322001220000000143
Q gi|254780398|r   48 GITVIEIGAGPG----NLTQMLLTLGARKVIVIEKDQQFF--PILKDISSQHPNRLEIIQDDALKVD  108 (284)
Q Consensus        48 ~~~VlEIGpG~G----~LT~~Ll~~~~~~v~aiEiD~~~~--~~l~~~~~~~~~~~~ii~~Dal~~d  108 (284)
                      ++.||=.|. +|    .|++.|++++. +|+++.+...-.  ..+.+..  ...+++++++|..+.+
T Consensus         3 ~KkilVTG~-tGfIGs~lv~~Ll~~g~-~V~~~dr~~~~~~~~~~~~~~--~~~~~~~v~~Di~d~~   65 (345)
T 2z1m_A            3 GKRALITGI-RGQDGAYLAKLLLEKGY-EVYGADRRSGEFASWRLKELG--IENDVKIIHMDLLEFS   65 (345)
T ss_dssp             CCEEEEETT-TSHHHHHHHHHHHHTTC-EEEEECSCCSTTTTHHHHHTT--CTTTEEECCCCTTCHH
T ss_pred             CCEEEEECC-CCHHHHHHHHHHHHCCC-EEEEEECCCCCCCHHHHHHHC--CCCCCEEEEEECCCHH
T ss_conf             098999899-87899999999997839-899998999764345588743--2689779980367857


No 267
>3eld_A Methyltransferase; flavivirus, RNA capping, guanylyltransferase, viral enzyme structure; HET: SFG; 1.90A {Wesselsbron virus} PDB: 3elu_A* 3elw_A* 3ely_A* 3emb_A* 3emd_A*
Probab=71.01  E-value=4.5  Score=19.45  Aligned_cols=34  Identities=15%  Similarity=0.157  Sum_probs=25.5

Q ss_pred             HHHHHHHCCCCCCCEEEEECCCCCHHHHHHHHCC
Q ss_conf             9999997198999879997589882346775023
Q gi|254780398|r   36 LKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLG   69 (284)
Q Consensus        36 ~~~iv~~~~~~~~~~VlEIGpG~G~LT~~Ll~~~   69 (284)
                      +..|.+--.+.++..|+++|+|+|.-|..++.+.
T Consensus        70 L~ei~ek~~l~p~g~VVDLG~aPGGWSQvaa~~~  103 (300)
T 3eld_A           70 IRWLHERGYLRITGRVLDLGCGRGGWSYYAAAQK  103 (300)
T ss_dssp             HHHHHHHTSCCCCEEEEEETCTTCHHHHHHHTST
T ss_pred             HHHHHHCCCCCCCCEEEEECCCCCHHHHHHHHHC
T ss_conf             9999970670458838983778964999998753


No 268
>3cxt_A Dehydrogenase with different specificities; rossman fold, oxidoreductase; HET: NAP GKR; 1.90A {Streptococcus suis} PDB: 3cxr_A*
Probab=70.40  E-value=5.3  Score=18.99  Aligned_cols=62  Identities=16%  Similarity=0.126  Sum_probs=46.0

Q ss_pred             CCCCEEEEECCCCC---HHHHHHHHCCCCEEEEECCCCCCHHHHHHHHHHHHCCCCCCHHHHCCCC
Q ss_conf             99987999758988---2346775023525998425543036887875322001220000000143
Q gi|254780398|r   46 LDGITVIEIGAGPG---NLTQMLLTLGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVD  108 (284)
Q Consensus        46 ~~~~~VlEIGpG~G---~LT~~Ll~~~~~~v~aiEiD~~~~~~l~~~~~~~~~~~~ii~~Dal~~d  108 (284)
                      .+++.+|=.|.+.|   ++.+.|++.++ +|+...++..-.+.+.+.......++..+.+|+.+.+
T Consensus        32 L~gK~alVTGas~GIG~aiA~~la~~Ga-~Vvi~~r~~~~~~~~~~~~~~~g~~~~~~~~Dv~~~~   96 (291)
T 3cxt_A           32 LKGKIALVTGASYGIGFAIASAYAKAGA-TIVFNDINQELVDRGMAAYKAAGINAHGYVCDVTDED   96 (291)
T ss_dssp             CTTCEEEEETCSSHHHHHHHHHHHHTTC-EEEEEESSHHHHHHHHHHHHHTTCCCEEEECCTTCHH
T ss_pred             CCCCEEEEECCCCHHHHHHHHHHHHCCC-EEEEEECCHHHHHHHHHHHHHCCCCEEEEEEECCCHH
T ss_conf             9998799928785999999999998799-8999979999999999999854995899996289999


No 269
>2nyu_A Putative ribosomal RNA methyltransferase 2; SAM, structural genomics, structural genomics consortium, SGC; HET: SAM; 1.76A {Homo sapiens}
Probab=68.05  E-value=3.3  Score=20.25  Aligned_cols=24  Identities=29%  Similarity=0.542  Sum_probs=20.8

Q ss_pred             CCCCCEEEEECCCCCHHHHHHHHC
Q ss_conf             899987999758988234677502
Q gi|254780398|r   45 SLDGITVIEIGAGPGNLTQMLLTL   68 (284)
Q Consensus        45 ~~~~~~VlEIGpG~G~LT~~Ll~~   68 (284)
                      +.++..|+++|++||+-|+.++++
T Consensus        20 ~~~~~~vlDLg~aPGgw~q~~~~~   43 (196)
T 2nyu_A           20 LRPGLRVLDCGAAPGAWSQVAVQK   43 (196)
T ss_dssp             CCTTCEEEEETCCSCHHHHHHHHH
T ss_pred             CCCCCEEEEECCCCCHHHHHHHHH
T ss_conf             579987999657897389999998


No 270
>3ofp_M 30S ribosomal protein S13; protein biosynthesis, ribosomes, RNA, tRNA, transfer, eryThr ketolide, macrolide, antibiotic, EXIT, peptidyl; 3.10A {Escherichia coli} PDB: 3fih_M* 2wwl_M 2qal_M* 1p6g_M 1p87_M 2aw7_M 2avy_M 2i2u_M 2i2p_M* 2qan_M* 2qb9_M* 2qbb_M* 2qbd_M 2qbf_M 2qbh_M* 2qbj_M* 2qou_M* 2qow_M* 2qoy_M* 2qp0_M* ...
Probab=67.35  E-value=0.61  Score=24.85  Aligned_cols=46  Identities=20%  Similarity=0.281  Sum_probs=31.6

Q ss_pred             CHHHHHHHHHCCC------HHHHHHCCCCCCCCHHCCCHHHHHHHHHHHHHC
Q ss_conf             1389998763181------789997877746571208999999999998636
Q gi|254780398|r  234 RKTLRQSLKRLGG------ENLLHQAGIETNLRAENLSIEDFCRITNILTDN  279 (284)
Q Consensus       234 RK~l~~~L~~~~~------~~~l~~~~i~~~~R~e~Ls~~~~~~L~~~l~~~  279 (284)
                      .|.+.-+|..++.      ..++..+|++++.|+.+|+.+|+-.|.+.+.++
T Consensus        11 ~K~v~~ALt~I~GIG~~~A~~Ic~~lgi~~~~rv~~Lt~~qi~~l~~~i~~~   62 (113)
T 3ofp_M           11 HKHAVIALTSIYGVGKTRSKAILAAAGIAEDVKISELSEGQIDTLRDEVAKF   62 (113)
T ss_dssp             CCCHHHHHTSSSSCCSSHHHHGGGTTTCCSSCCSSSCCTTSSTTTHHHHHSS
T ss_pred             CCEEEEEEECEECCCHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHC
T ss_conf             9786655014347489999999998498987404859999999999998610


No 271
>3h7a_A Short chain dehydrogenase; oxidoreductase, PSI-2, NYSGXRC, structural genomics, protein structure initiative; 1.87A {Rhodopseudomonas palustris}
Probab=67.19  E-value=6.3  Score=18.53  Aligned_cols=61  Identities=21%  Similarity=0.165  Sum_probs=44.7

Q ss_pred             CCCEEEEECCCCC---HHHHHHHHCCCCEEEEECCCCCCHHHHHHHHHHHHCCCCCCHHHHCCCC
Q ss_conf             9987999758988---2346775023525998425543036887875322001220000000143
Q gi|254780398|r   47 DGITVIEIGAGPG---NLTQMLLTLGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVD  108 (284)
Q Consensus        47 ~~~~VlEIGpG~G---~LT~~Ll~~~~~~v~aiEiD~~~~~~l~~~~~~~~~~~~ii~~Dal~~d  108 (284)
                      ++..||=.|.+.|   ++.+.+++.|+ +|+...++..-++.+.+.......++..+.+|+.+.+
T Consensus         6 knk~vlITGas~GIG~aiA~~la~~Ga-~V~i~~r~~~~l~~~~~~i~~~g~~~~~~~~Dvs~~~   69 (252)
T 3h7a_A            6 RNATVAVIGAGDYIGAEIAKKFAAEGF-TVFAGRRNGEKLAPLVAEIEAAGGRIVARSLDARNED   69 (252)
T ss_dssp             CSCEEEEECCSSHHHHHHHHHHHHTTC-EEEEEESSGGGGHHHHHHHHHTTCEEEEEECCTTCHH
T ss_pred             CCCEEEEECCCHHHHHHHHHHHHHCCC-EEEEEECCHHHHHHHHHHHHHCCCEEEEEECCCCCHH
T ss_conf             999899975855899999999998799-9999989999999999999963983999977768999


No 272
>3evf_A RNA-directed RNA polymerase NS5; NS5 methyltransferase, RNA CAP binding, ATP-binding, capsid protein, cleavage on PAIR of basic residues; HET: GTA SAH; 1.45A {Yellow fever virus 17D} PDB: 3evb_A* 3evc_A* 3evd_A* 3eve_A* 3eva_A*
Probab=66.16  E-value=6  Score=18.68  Aligned_cols=30  Identities=20%  Similarity=0.153  Sum_probs=24.0

Q ss_pred             HHHHCCCCCCCEEEEECCCCCHHHHHHHHC
Q ss_conf             999719899987999758988234677502
Q gi|254780398|r   39 IAESSGSLDGITVIEIGAGPGNLTQMLLTL   68 (284)
Q Consensus        39 iv~~~~~~~~~~VlEIGpG~G~LT~~Ll~~   68 (284)
                      |.+--.+.++..|+++|+|+|.-|..++++
T Consensus        66 I~ek~~lkp~~~VVDLGaAPGGWSQvaa~~   95 (277)
T 3evf_A           66 FHERGYVKLEGRVIDLGCGRGGWCYYAAAQ   95 (277)
T ss_dssp             HHHTTSSCCCEEEEEETCTTCHHHHHHHTS
T ss_pred             HHHCCCCCCCCEEEEECCCCCHHHHHHHHH
T ss_conf             998068577987999267886899999985


No 273
>3l4b_C TRKA K+ channel protien TM1088B; potassium channel, ring-gating complex, structural genomics, PSI-2-2, protein structure initiative; HET: AMP; 3.45A {Thermotoga maritima}
Probab=65.81  E-value=6.2  Score=18.59  Aligned_cols=72  Identities=21%  Similarity=0.228  Sum_probs=39.8

Q ss_pred             EEEECCCCCHHHHHHHH----CCCCEEEEECCCCCCHHHHHHHHHHHHCCCCCCHHHHCCCCHHHHCCCCCCEEEEECCC
Q ss_conf             99975898823467750----23525998425543036887875322001220000000143155213322201120232
Q gi|254780398|r   51 VIEIGAGPGNLTQMLLT----LGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLP  126 (284)
Q Consensus        51 VlEIGpG~G~LT~~Ll~----~~~~~v~aiEiD~~~~~~l~~~~~~~~~~~~ii~~Dal~~d~~~~~~~~~~~~vvgNLP  126 (284)
                      |+=+|.  |.++..+++    .+ ..|+.+|.|+..+..+.+.+     ...+++||+..-+.-+-.....--.+|+-.+
T Consensus         3 iiI~G~--g~~g~~la~~L~~~g-~~vvvid~d~~~~~~~~~~~-----~~~~i~gD~~~~~~L~~a~i~~a~~~ia~t~   74 (218)
T 3l4b_C            3 VIIIGG--ETTAYYLARSMLSRK-YGVVIINKDRELCEEFAKKL-----KATIIHGDGSHKEILRDAEVSKNDVVVILTP   74 (218)
T ss_dssp             EEEECC--HHHHHHHHHHHHHTT-CCEEEEESCHHHHHHHHHHS-----SSEEEESCTTSHHHHHHHTCCTTCEEEECCS
T ss_pred             EEEECC--CHHHHHHHHHHHHCC-CCEEEEECCHHHHHHHHHHC-----CCEEEECCCCCHHHHHHHHCCCCCEEEECCC
T ss_conf             999998--899999999999789-98999999999999999852-----6307854543268887664046654764158


Q ss_pred             ---HHHH
Q ss_conf             ---2467
Q gi|254780398|r  127 ---YNIG  130 (284)
Q Consensus       127 ---YnIs  130 (284)
                         .|+.
T Consensus        75 ~D~~N~~   81 (218)
T 3l4b_C           75 RDEVNLF   81 (218)
T ss_dssp             CHHHHHH
T ss_pred             CHHHHHH
T ss_conf             7888899


No 274
>1yb1_A 17-beta-hydroxysteroid dehydrogenase type XI; short chain dehydrogenase, human, structural genomics, structural genomics consortium, SGC; HET: AE2; 1.95A {Homo sapiens} SCOP: c.2.1.2
Probab=65.80  E-value=6.7  Score=18.36  Aligned_cols=62  Identities=15%  Similarity=0.166  Sum_probs=46.7

Q ss_pred             CCCCEEEEECCCCC---HHHHHHHHCCCCEEEEECCCCCCHHHHHHHHHHHHCCCCCCHHHHCCCC
Q ss_conf             99987999758988---2346775023525998425543036887875322001220000000143
Q gi|254780398|r   46 LDGITVIEIGAGPG---NLTQMLLTLGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVD  108 (284)
Q Consensus        46 ~~~~~VlEIGpG~G---~LT~~Ll~~~~~~v~aiEiD~~~~~~l~~~~~~~~~~~~ii~~Dal~~d  108 (284)
                      ..|+.+|=-|.+.|   ++.+.|++.++ +|+.+.+|+.-.+.+.+.+.....++..+.+|..+.+
T Consensus        29 l~GKvalITGas~GIG~a~A~~la~~Ga-~V~l~~r~~~~l~~~~~~l~~~g~~~~~~~~Dvt~~~   93 (272)
T 1yb1_A           29 VTGEIVLITGAGHGIGRLTAYEFAKLKS-KLVLWDINKHGLEETAAKCKGLGAKVHTFVVDCSNRE   93 (272)
T ss_dssp             CTTCEEEEETTTSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHHHHHTTCCEEEEECCTTCHH
T ss_pred             CCCCEEEEECCCCHHHHHHHHHHHHCCC-EEEEEECCHHHHHHHHHHHHHCCCCEEEEEEECCCHH
T ss_conf             9998899938576999999999998799-8999989999999999999854993899997279989


No 275
>2jah_A Clavulanic acid dehydrogenase; short-chain dehydrogenase/reductase, lactamase inhibitor, antibiotic biosynthesis, NADPH; HET: MSE NDP; 1.80A {Streptomyces clavuligerus} PDB: 2jap_A*
Probab=64.51  E-value=7.1  Score=18.21  Aligned_cols=63  Identities=19%  Similarity=0.282  Sum_probs=45.5

Q ss_pred             CCCCCEEEEECCCCC---HHHHHHHHCCCCEEEEECCCCCCHHHHHHHHHHHHCCCCCCHHHHCCCC
Q ss_conf             899987999758988---2346775023525998425543036887875322001220000000143
Q gi|254780398|r   45 SLDGITVIEIGAGPG---NLTQMLLTLGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVD  108 (284)
Q Consensus        45 ~~~~~~VlEIGpG~G---~LT~~Ll~~~~~~v~aiEiD~~~~~~l~~~~~~~~~~~~ii~~Dal~~d  108 (284)
                      ..+|+.+|=-|.+.|   ++.+.+++.++ +|+...+|+.-.+.+.+.+.....++..+.+|+.+.+
T Consensus         4 ~L~gKvalITGas~GIG~aiA~~la~~Ga-~V~~~~r~~~~l~~~~~~l~~~g~~~~~~~~Dvs~~~   69 (247)
T 2jah_A            4 ALQGKVALITGASSGIGEATARALAAEGA-AVAIAARRVEKLRALGDELTAAGAKVHVLELDVADRQ   69 (247)
T ss_dssp             TTTTCEEEEESCSSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHHHHHTTCCEEEEECCTTCHH
T ss_pred             CCCCCEEEEECCCCHHHHHHHHHHHHCCC-EEEEEECCHHHHHHHHHHHHHCCCCEEEEEEECCCHH
T ss_conf             65989899938787899999999998799-8999989899999999999854993899991089999


No 276
>3c85_A Putative glutathione-regulated potassium-efflux system protein KEFB; TRKA domain; HET: AMP; 1.90A {Vibrio parahaemolyticus rimd 2210633}
Probab=63.88  E-value=7.3  Score=18.13  Aligned_cols=85  Identities=16%  Similarity=0.220  Sum_probs=52.0

Q ss_pred             CCEEEEECCCC-C-HHHHHHHHCCCCEEEEECCCCCCHHHHHHHHHHHHCCCCCCHHHHCCCCHH-HHCCCCCCEEEEEC
Q ss_conf             98799975898-8-234677502352599842554303688787532200122000000014315-52133222011202
Q gi|254780398|r   48 GITVIEIGAGP-G-NLTQMLLTLGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFE-KFFNISSPIRIIAN  124 (284)
Q Consensus        48 ~~~VlEIGpG~-G-~LT~~Ll~~~~~~v~aiEiD~~~~~~l~~~~~~~~~~~~ii~~Dal~~d~~-~~~~~~~~~~vvgN  124 (284)
                      +..|+=+|.|. | .+.+.|...+...+++||.|+..++.+++.     + +.++.||+.+.+.- +....+..-.||..
T Consensus        39 ~~hviI~G~GrvG~~ia~~L~~~~~~~~vviD~d~~~v~~l~~~-----g-~~~v~gD~~d~~~L~~a~~~~~a~~vi~~  112 (183)
T 3c85_A           39 HAQVLILGMGRIGTGAYDELRARYGKISLGIEIREEAAQQHRSE-----G-RNVISGDATDPDFWERILDTGHVKLVLLA  112 (183)
T ss_dssp             TCSEEEECCSHHHHHHHHHHHHHHCSCEEEEESCHHHHHHHHHT-----T-CCEEECCTTCHHHHHTBCSCCCCCEEEEC
T ss_pred             CCCEEEECCCHHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHCC-----C-CEEEECCCCCHHHHHHHCCCCCCCEEEEC
T ss_conf             99789989888999999999984898699993881887886304-----6-13898689999999971496767499981


Q ss_pred             CCHHHHHHHHHHHH
Q ss_conf             32246788999998
Q gi|254780398|r  125 LPYNIGTRLLFNWI  138 (284)
Q Consensus       125 LPYnIss~Il~~ll  138 (284)
                      .|..-++-.+...+
T Consensus       113 ~~~~~~n~~~~~~~  126 (183)
T 3c85_A          113 MPHHQGNQTALEQL  126 (183)
T ss_dssp             CSSHHHHHHHHHHH
T ss_pred             CCCHHHHHHHHHHH
T ss_conf             68407999999999


No 277
>2b9w_A Putative aminooxidase; isomerase, conjugated linoleic acid, FAD; HET: FAD 12P; 1.95A {Propionibacterium acnes} PDB: 2b9x_A* 2b9y_A* 2ba9_A* 2bab_A* 2bac_A*
Probab=63.11  E-value=5.2  Score=19.04  Aligned_cols=38  Identities=24%  Similarity=0.364  Sum_probs=26.6

Q ss_pred             CCCCCEEEEECCCCCHHHHH--HHHCCCCEEEEECCCCCC
Q ss_conf             89998799975898823467--750235259984255430
Q gi|254780398|r   45 SLDGITVIEIGAGPGNLTQM--LLTLGARKVIVIEKDQQF   82 (284)
Q Consensus        45 ~~~~~~VlEIGpG~G~LT~~--Ll~~~~~~v~aiEiD~~~   82 (284)
                      ..++..|+=||+|...||-+  |.+.+.+.|+.+|...+.
T Consensus         3 ~~~~~~V~IIGaG~aGLsaA~~L~~~G~~~V~vlE~~~~~   42 (424)
T 2b9w_A            3 ISKDSRIAIIGAGPAGLAAGMYLEQAGFHDYTILERTDHV   42 (424)
T ss_dssp             CCTTCCEEEECCSHHHHHHHHHHHHTTCCCEEEECSSSCS
T ss_pred             CCCCCCEEEECCCHHHHHHHHHHHHCCCCCEEEEECCCCC
T ss_conf             9999979998988899999999985599978999469987


No 278
>3ftp_A 3-oxoacyl-[acyl-carrier protein] reductase; ssgcid, 3-ketoacyl-(acyl-carrier- protein) reductase, oxidoreductase, structural genomics; 2.05A {Burkholderia pseudomallei}
Probab=63.01  E-value=6.8  Score=18.33  Aligned_cols=62  Identities=19%  Similarity=0.020  Sum_probs=44.9

Q ss_pred             CCCCEEEEECCCCC---HHHHHHHHCCCCEEEEECCCCCCHHHHHHHHHHHHCCCCCCHHHHCCCC
Q ss_conf             99987999758988---2346775023525998425543036887875322001220000000143
Q gi|254780398|r   46 LDGITVIEIGAGPG---NLTQMLLTLGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVD  108 (284)
Q Consensus        46 ~~~~~VlEIGpG~G---~LT~~Ll~~~~~~v~aiEiD~~~~~~l~~~~~~~~~~~~ii~~Dal~~d  108 (284)
                      .+++.+|=.|.+.|   ++.+.|++.++ +|+.+.+++.-.+.+.+.+.....++..+.+|+.+.+
T Consensus        26 L~gKvalITGas~GIG~aiA~~la~~Ga-~Vv~~~r~~~~l~~~~~~i~~~g~~~~~~~~Dvs~~~   90 (270)
T 3ftp_A           26 LDKQVAIVTGASRGIGRAIALELARRGA-MVIGTATTEAGAEGIGAAFKQAGLEGRGAVLNVNDAT   90 (270)
T ss_dssp             TTTCEEEETTCSSHHHHHHHHHHHHTTC-EEEEEESSHHHHHHHHHHHHHHTCCCEEEECCTTCHH
T ss_pred             CCCCEEEEECCCCHHHHHHHHHHHHCCC-EEEEEECCHHHHHHHHHHHHHCCCCEEEEEEECCCHH
T ss_conf             7999899938685899999999998699-9999979889999999999965994699997369999


No 279
>2hmt_A YUAA protein; RCK, KTN, KTR, KTRA, ktrab, membrane protein, ION transporter, symporter, transport protein; HET: NAI; 2.20A {Bacillus subtilis} SCOP: c.2.1.9 PDB: 2hms_A* 2hmu_A* 2hmv_A* 2hmw_A* 1lsu_A*
Probab=62.75  E-value=6.6  Score=18.43  Aligned_cols=84  Identities=14%  Similarity=0.152  Sum_probs=48.4

Q ss_pred             CCEEEEECCCCC--HHHHHHHHCCCCEEEEECCCCCCHHHHHHHHHHHHCCCCCCHHHHCCCCHHHHCCCCCCEEEEECC
Q ss_conf             987999758988--234677502352599842554303688787532200122000000014315521332220112023
Q gi|254780398|r   48 GITVIEIGAGPG--NLTQMLLTLGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANL  125 (284)
Q Consensus        48 ~~~VlEIGpG~G--~LT~~Ll~~~~~~v~aiEiD~~~~~~l~~~~~~~~~~~~ii~~Dal~~d~~~~~~~~~~~~vvgNL  125 (284)
                      +..++=+|.|.-  .+.+.|.+.+. +|+++|.|+..++.+++.     + ..++.||+.+-+.-.-......-.||.-+
T Consensus         6 ~~~~iIiG~G~~G~~la~~L~~~g~-~vvviD~d~~~~~~~~~~-----g-~~~v~gD~td~~~L~~a~i~~a~~vii~~   78 (144)
T 2hmt_A            6 NKQFAVIGLGRFGGSIVKELHRMGH-EVLAVDINEEKVNAYASY-----A-THAVIANATEENELLSLGIRNFEYVIVAI   78 (144)
T ss_dssp             CCSEEEECCSHHHHHHHHHHHHTTC-CCEEEESCHHHHHTTTTT-----C-SEEEECCTTCHHHHHTTTGGGCSEEEECC
T ss_pred             CCEEEEECCCHHHHHHHHHHHHCCC-EEEEEECCHHHHHHHHHC-----C-CEEEEECCCCHHHHHHCCCCCCCEEEEEE
T ss_conf             7839998878999999999998899-199997967999999853-----9-74999317888888630223499999981


Q ss_pred             CHHHHHHHHHHHH
Q ss_conf             2246788999998
Q gi|254780398|r  126 PYNIGTRLLFNWI  138 (284)
Q Consensus       126 PYnIss~Il~~ll  138 (284)
                      |-...+.++..+.
T Consensus        79 ~~d~~~~~~~~~~   91 (144)
T 2hmt_A           79 GANIQASTLTTLL   91 (144)
T ss_dssp             CSCHHHHHHHHHH
T ss_pred             CCCHHHHHHHHHH
T ss_conf             8868999999999


No 280
>2qq5_A DHRS1, dehydrogenase/reductase SDR family member 1; short-chain, structural genomics consortium, SGC, oxidoreductase; 1.80A {Homo sapiens}
Probab=61.44  E-value=8.1  Score=17.86  Aligned_cols=63  Identities=14%  Similarity=0.224  Sum_probs=44.4

Q ss_pred             CCCCCEEEEECCCCC---HHHHHHHHCCCCEEEEECCCCCCHHHHHHHHHHHHCCCCCCHHHHCCCC
Q ss_conf             899987999758988---2346775023525998425543036887875322001220000000143
Q gi|254780398|r   45 SLDGITVIEIGAGPG---NLTQMLLTLGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVD  108 (284)
Q Consensus        45 ~~~~~~VlEIGpG~G---~LT~~Ll~~~~~~v~aiEiD~~~~~~l~~~~~~~~~~~~ii~~Dal~~d  108 (284)
                      +..|+.+|=-|.+.|   ++.+.+++.++ +|+...++..-++.+.+......++...+.+|..+.+
T Consensus         2 pL~GKv~lITG~s~GIG~aia~~la~~Ga-~V~i~~r~~~~l~~~~~~i~~~~~~~~~~~~D~~~~~   67 (260)
T 2qq5_A            2 PMNGQVCVVTGASRGIGRGIALQLCKAGA-TVYITGRHLDTLRVVAQEAQSLGGQCVPVVCDSSQES   67 (260)
T ss_dssp             TTTTCEEEESSTTSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHHHHHHSSEEEEEECCTTSHH
T ss_pred             CCCCCEEEEECCCCHHHHHHHHHHHHCCC-EEEEEECCHHHHHHHHHHHHHCCCCEEEEECCCCCHH
T ss_conf             99998899958586999999999998799-8999979889999999999964993899976789999


No 281
>2jae_A L-amino acid oxidase; oxidoreductase, dimerisation mode, hydride transfer mechanism, GR2-family, flavoenzyme, FAD containing; HET: FAD; 1.25A {Rhodococcus opacus} PDB: 2jb1_A* 2jb2_A* 2jb3_A*
Probab=61.08  E-value=7.5  Score=18.06  Aligned_cols=37  Identities=30%  Similarity=0.424  Sum_probs=27.5

Q ss_pred             CCCCCEEEEECCCCCHHHH--HHHHCCCCEEEEECCCCCC
Q ss_conf             8999879997589882346--7750235259984255430
Q gi|254780398|r   45 SLDGITVIEIGAGPGNLTQ--MLLTLGARKVIVIEKDQQF   82 (284)
Q Consensus        45 ~~~~~~VlEIGpG~G~LT~--~Ll~~~~~~v~aiEiD~~~   82 (284)
                      ......|+=||+|.+.||-  .|.+++ .+|+.+|...+.
T Consensus         8 ~~~~~dVvIIGaG~aGL~aA~~L~~~G-~~V~vlEa~~~~   46 (489)
T 2jae_A            8 VKGSHSVVVLGGGPAGLCSAFELQKAG-YKVTVLEARTRP   46 (489)
T ss_dssp             CCSCCEEEEECCSHHHHHHHHHHHHTT-CEEEEECSSSSS
T ss_pred             CCCCCCEEEECCCHHHHHHHHHHHHCC-CCEEEEECCCCC
T ss_conf             899996799897889999999998589-999999189978


No 282
>2bi7_A UDP-galactopyranose mutase; FAD, flavoprotein, isomerase, lipopolysaccharide biosynthesis; HET: FAD; 2.0A {Klebsiella pneumoniae} SCOP: c.4.1.3 d.16.1.7 PDB: 2bi8_A* 1wam_A* 3inr_A* 3gf4_A* 3int_A*
Probab=60.50  E-value=6.6  Score=18.42  Aligned_cols=40  Identities=18%  Similarity=0.185  Sum_probs=29.9

Q ss_pred             CCCEEEEECCCCCHHHHH--HHHCCCCEEEEECCCCCCHHHHH
Q ss_conf             998799975898823467--75023525998425543036887
Q gi|254780398|r   47 DGITVIEIGAGPGNLTQM--LLTLGARKVIVIEKDQQFFPILK   87 (284)
Q Consensus        47 ~~~~VlEIGpG~G~LT~~--Ll~~~~~~v~aiEiD~~~~~~l~   87 (284)
                      +...|+=||+|+..||-+  |.+++ .+|+.+|.+.+.-..+.
T Consensus         2 k~kki~IIGaG~sGL~~A~~L~k~g-~~V~v~Ek~~~~GG~~~   43 (384)
T 2bi7_A            2 KSKKILIVGAGFSGAVIGRQLAEKG-HQVHIIDQRDHIGGNSY   43 (384)
T ss_dssp             CCCEEEEECCSHHHHHHHHHHHTTT-CEEEEEESSSSSSGGGC
T ss_pred             CCCCEEEECCCHHHHHHHHHHHHCC-CCEEEEECCCCCCCCEE
T ss_conf             8686999896199999999998489-95799978898777225


No 283
>3nzo_A UDP-N-acetylglucosamine 4,6-dehydratase; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG, NAD; HET: MSE NAD; 2.10A {Vibrio fischeri}
Probab=60.46  E-value=8.4  Score=17.75  Aligned_cols=61  Identities=13%  Similarity=0.223  Sum_probs=37.3

Q ss_pred             CCCEEEEECCCCCHH----HHHHHHCCCCEEEEECCCCCCHHHH-HH---HHHHHHCCCCCCHHHHCCCC
Q ss_conf             998799975898823----4677502352599842554303688-78---75322001220000000143
Q gi|254780398|r   47 DGITVIEIGAGPGNL----TQMLLTLGARKVIVIEKDQQFFPIL-KD---ISSQHPNRLEIIQDDALKVD  108 (284)
Q Consensus        47 ~~~~VlEIGpG~G~L----T~~Ll~~~~~~v~aiEiD~~~~~~l-~~---~~~~~~~~~~ii~~Dal~~d  108 (284)
                      .+..||=-|+ .|.+    ++.|++.+++.|+++++|+.-.-.+ ++   ........+..+.+|....+
T Consensus        34 ~~KkILVTGg-~GfIGS~Lv~~Ll~~~~~~iii~d~~e~~l~~i~~~l~~~~~~~~~~~~~~~~di~d~~  102 (399)
T 3nzo_A           34 SQSRFLVLGG-AGSIGQAVTKEIFKRNPQKLHVVDISENNMVELVRDIRSSFGYINGDFQTFALDIGSIE  102 (399)
T ss_dssp             HTCEEEEETT-TSHHHHHHHHHHHTTCCSEEEEECSCHHHHHHHHHHHHHHTCCCSSEEEEECCCTTSHH
T ss_pred             CCCEEEEECC-CCHHHHHHHHHHHHCCCCEEEEEECCCHHHHHHHHHHHHHHHHCCCCCCEEEEECCCHH
T ss_conf             8599999789-88899999999996599989999698167899999998753202667404554414468


No 284
>2ae2_A Protein (tropinone reductase-II); oxidoreductase, tropane alkaloid biosynthesis, reduction of tropinone to pseudotropine; HET: NAP PTO; 1.90A {Datura stramonium} SCOP: c.2.1.2 PDB: 2ae1_A* 1ipe_A* 1ipf_A*
Probab=59.41  E-value=8.8  Score=17.64  Aligned_cols=62  Identities=21%  Similarity=0.221  Sum_probs=44.5

Q ss_pred             CCCCEEEEECCCCC---HHHHHHHHCCCCEEEEECCCCCCHHHHHHHHHHHHCCCCCCHHHHCCCC
Q ss_conf             99987999758988---2346775023525998425543036887875322001220000000143
Q gi|254780398|r   46 LDGITVIEIGAGPG---NLTQMLLTLGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVD  108 (284)
Q Consensus        46 ~~~~~VlEIGpG~G---~LT~~Ll~~~~~~v~aiEiD~~~~~~l~~~~~~~~~~~~ii~~Dal~~d  108 (284)
                      .+++.+|=-|.+.|   ++.+.|++.++ +|+...+++.-.+.+.+.......++..+.+|+.+.+
T Consensus         7 L~GK~alVTGas~GIG~aia~~la~~Ga-~V~~~~r~~~~l~~~~~~~~~~g~~~~~~~~Dv~~~~   71 (260)
T 2ae2_A            7 LEGCTALVTGGSRGIGYGIVEELASLGA-SVYTCSRNQKELNDCLTQWRSKGFKVEASVCDLSSRS   71 (260)
T ss_dssp             CTTCEEEEESCSSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHHHHHTTCEEEEEECCTTCHH
T ss_pred             CCCCEEEEECCCCHHHHHHHHHHHHCCC-EEEEEECCHHHHHHHHHHHHHCCCCEEEEECCCCCHH
T ss_conf             9999899948888899999999998699-9999969889999999998724982899987789999


No 285
>2plw_A Ribosomal RNA methyltransferase, putative; malaria, SAM, structural genomics, structural genomics consortium, SGC; HET: SAM; 1.70A {Plasmodium falciparum 3D7}
Probab=59.33  E-value=7.4  Score=18.09  Aligned_cols=53  Identities=25%  Similarity=0.327  Sum_probs=33.3

Q ss_pred             CCCCEEEEECCCCCHHHHHHHHCCCC---EEEEECCCCCCHHHHHHHHHHHHCCCCCCHHHHCCCC
Q ss_conf             99987999758988234677502352---5998425543036887875322001220000000143
Q gi|254780398|r   46 LDGITVIEIGAGPGNLTQMLLTLGAR---KVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVD  108 (284)
Q Consensus        46 ~~~~~VlEIGpG~G~LT~~Ll~~~~~---~v~aiEiD~~~~~~l~~~~~~~~~~~~ii~~Dal~~d  108 (284)
                      .++..|+++|++||+-+..+.++...   .+.++...+.         .. ..++..+.||+.+..
T Consensus        21 ~~~~~vvDLg~aPGgw~q~~~~~~~~~~~~~~~~~~~~~---------~~-~~~~~~~~gd~~~~~   76 (201)
T 2plw_A           21 KKNKIILDIGCYPGSWCQVILERTKNYKNKIIGIDKKIM---------DP-IPNVYFIQGEIGKDN   76 (201)
T ss_dssp             CTTEEEEEESCTTCHHHHHHHHHTTTSCEEEEEEESSCC---------CC-CTTCEEEECCTTTTS
T ss_pred             CCCCEEEEECCCCCHHHHHHHHHHCCCCCCEEECCCCCC---------CC-CCCCEEEEECCCCHH
T ss_conf             799879994789977999999984178883786134333---------34-789738960365403


No 286
>1o94_A Tmadh, trimethylamine dehydrogenase; electron transport, protein complex; HET: FMN ADP AMP; 2.0A {Methylophilus methylotrophus} SCOP: c.1.4.1 c.3.1.1 c.4.1.1 PDB: 1djn_A* 1o95_A* 2tmd_A* 1djq_A*
Probab=58.79  E-value=7.6  Score=18.03  Aligned_cols=36  Identities=22%  Similarity=0.386  Sum_probs=28.2

Q ss_pred             CCCEEEEECCCCCHHHH--HHHHCCCCEEEEECCCCCCH
Q ss_conf             99879997589882346--77502352599842554303
Q gi|254780398|r   47 DGITVIEIGAGPGNLTQ--MLLTLGARKVIVIEKDQQFF   83 (284)
Q Consensus        47 ~~~~VlEIGpG~G~LT~--~Ll~~~~~~v~aiEiD~~~~   83 (284)
                      .+..|+=||.|++.|+-  .+++++. +|+.+|..+++-
T Consensus       388 ~~kkV~VIGaGPAGL~AA~~la~~G~-~VtL~Ek~~~lG  425 (729)
T 1o94_A          388 NKDSVLIVGAGPSGSEAARVLMESGY-TVHLTDTAEKIG  425 (729)
T ss_dssp             SCCEEEEECCSHHHHHHHHHHHHTTC-EEEEECSSSSTT
T ss_pred             CCCEEEEECCCHHHHHHHHHHHHCCC-CEEEEEECCCCC
T ss_conf             68779998736779999999973799-389996237776


No 287
>1zem_A Xylitol dehydrogenase; rossmann fold, dinucleotide-binding domain, oxidoreductase; HET: NAD; 1.90A {Gluconobacter oxydans} SCOP: c.2.1.2
Probab=58.23  E-value=9.2  Score=17.52  Aligned_cols=62  Identities=11%  Similarity=0.142  Sum_probs=44.9

Q ss_pred             CCCCEEEEECCCCCH---HHHHHHHCCCCEEEEECCCCCCHHHHHHHHHHHHCCCCCCHHHHCCCC
Q ss_conf             999879997589882---346775023525998425543036887875322001220000000143
Q gi|254780398|r   46 LDGITVIEIGAGPGN---LTQMLLTLGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVD  108 (284)
Q Consensus        46 ~~~~~VlEIGpG~G~---LT~~Ll~~~~~~v~aiEiD~~~~~~l~~~~~~~~~~~~ii~~Dal~~d  108 (284)
                      .+++.+|=.|.+.|.   +.+.|++.++ +|+.+.+|+.-.+.+.+.......++..+.+|+.+.+
T Consensus         5 l~gKvalITGas~GIG~aia~~la~~Ga-~V~~~~r~~~~l~~~~~~l~~~g~~~~~~~~Dv~~~~   69 (262)
T 1zem_A            5 FNGKVCLVTGAGGNIGLATALRLAEEGT-AIALLDMNREALEKAEASVREKGVEARSYVCDVTSEE   69 (262)
T ss_dssp             TTTCEEEEETTTSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHHHHTTTSCEEEEECCTTCHH
T ss_pred             CCCCEEEEECCCCHHHHHHHHHHHHCCC-EEEEEECCHHHHHHHHHHHHHCCCCEEEEECCCCCHH
T ss_conf             2839899938787899999999998799-8999989989999999999852993899982389999


No 288
>3gdg_A Probable NADP-dependent mannitol dehydrogenase; rossmann fold, beta-alpha-beta motifs, open twisted sheet, A NADP, oxidoreductase; 2.30A {Cladosporium herbarum} PDB: 3gdf_A
Probab=57.69  E-value=9.4  Score=17.46  Aligned_cols=77  Identities=16%  Similarity=0.175  Sum_probs=48.4

Q ss_pred             CCCCCCCHHHHHHHHHHCCCCCCCEEEEECCC--CC---HHHHHHHHCCCCEEEEECCCC--CCHHHHHHHHHHHHCCCC
Q ss_conf             84112398999999997198999879997589--88---234677502352599842554--303688787532200122
Q gi|254780398|r   26 GQNFLLDLNILKKIAESSGSLDGITVIEIGAG--PG---NLTQMLLTLGARKVIVIEKDQ--QFFPILKDISSQHPNRLE   98 (284)
Q Consensus        26 GQnFL~d~~i~~~iv~~~~~~~~~~VlEIGpG--~G---~LT~~Ll~~~~~~v~aiEiD~--~~~~~l~~~~~~~~~~~~   98 (284)
                      ||.....+.+.+++    ++ +++.+|=-|++  .|   ++.+.+++.++ +|+....+.  .+.+.+++.......++.
T Consensus         3 ~~~~~~~~~~~~~~----~L-~gKvalVTGAsG~~GIG~aia~~la~~Ga-~V~i~~~~~~~~~~~~~~~l~~~~g~~~~   76 (267)
T 3gdg_A            3 GQQATKHESLLDQL----SL-KGKVVVVTGASGPKGMGIEAARGCAEMGA-AVAITYASRAQGAEENVKELEKTYGIKAK   76 (267)
T ss_dssp             CCCCCSCSSHHHHH----CC-TTCEEEETTCCSSSSHHHHHHHHHHHTSC-EEEECBSSSSSHHHHHHHHHHHHHCCCEE
T ss_pred             CCCCCCCCCCCCCC----CC-CCCEEEEECCCCCCHHHHHHHHHHHHCCC-EEEEEECCCHHHHHHHHHHHHHHCCCCEE
T ss_conf             87666552530225----98-99989995989997089999999998699-89998489457799999999985099579


Q ss_pred             CCHHHHCCCC
Q ss_conf             0000000143
Q gi|254780398|r   99 IIQDDALKVD  108 (284)
Q Consensus        99 ii~~Dal~~d  108 (284)
                      .+.+|+.+.+
T Consensus        77 ~~~~Dv~~~~   86 (267)
T 3gdg_A           77 AYKCQVDSYE   86 (267)
T ss_dssp             CCBCCTTCHH
T ss_pred             EEECCCCCHH
T ss_conf             9981389999


No 289
>2vdc_G Glutamate synthase [NADPH] small chain; oxidoreductase, amidotransferase, ammonia assimilation, iron, zymogen; HET: OMT FMN AKG FAD; 9.50A {Azospirillum brasilense}
Probab=56.26  E-value=9  Score=17.56  Aligned_cols=38  Identities=32%  Similarity=0.428  Sum_probs=30.1

Q ss_pred             CCCEEEEECCCCCHHH--HHHHHCCCCEEEEECCCCCCHHH
Q ss_conf             9987999758988234--67750235259984255430368
Q gi|254780398|r   47 DGITVIEIGAGPGNLT--QMLLTLGARKVIVIEKDQQFFPI   85 (284)
Q Consensus        47 ~~~~VlEIGpG~G~LT--~~Ll~~~~~~v~aiEiD~~~~~~   85 (284)
                      .+..|.=||.|++.||  ..|++++. +|+.+|..+..=..
T Consensus       121 ~~kkVAIIGaGPAGl~AA~~La~~G~-~VtvfE~~~~~GG~  160 (456)
T 2vdc_G          121 LGLSVGVIGAGPAGLAAAEELRAKGY-EVHVYDRYDRMGGL  160 (456)
T ss_dssp             CCCCEEEECCSHHHHHHHHHHHHHTC-CEEEECSSSSCSTH
T ss_pred             CCCEEEEECCCHHHHHHHHHHHHCCC-EEEEEEECCCCCCE
T ss_conf             79879998978899999999985798-79999706755655


No 290
>1ps9_A 2,4-dienoyl-COA reductase; iron-sulfur, TIM barrel, flavodoxin, flavin, electron transfer, hydride transfer, oxidoreductase; HET: FAD FMN NAP MDE; 2.20A {Escherichia coli} SCOP: c.1.4.1 c.3.1.1 c.4.1.1
Probab=55.24  E-value=9.3  Score=17.48  Aligned_cols=38  Identities=18%  Similarity=0.311  Sum_probs=28.4

Q ss_pred             CCCCEEEEECCCCCHHHHH--HHHCCCCEEEEECCCCCCHH
Q ss_conf             9998799975898823467--75023525998425543036
Q gi|254780398|r   46 LDGITVIEIGAGPGNLTQM--LLTLGARKVIVIEKDQQFFP   84 (284)
Q Consensus        46 ~~~~~VlEIGpG~G~LT~~--Ll~~~~~~v~aiEiD~~~~~   84 (284)
                      .....|+=||.|++.||-+  +++++. +|+.+|..+++-.
T Consensus       371 ~~~kkVvVIGaGPAGl~AA~~lA~~G~-~Vtl~Ek~~~lGG  410 (671)
T 1ps9_A          371 VQKKNLAVVGAGPAGLAFAINAAARGH-QVTLFDAHSEIGG  410 (671)
T ss_dssp             SSCCEEEEECCSHHHHHHHHHHHTTTC-EEEEEESSSSSCT
T ss_pred             CCCCEEEEECCCHHHHHHHHHHHHHHC-CCEEEEECCCCCC
T ss_conf             656279997843888999999987525-6407830566775


No 291
>3hdq_A UDP-galactopyranose mutase; substrate and inhibitor, isomerase; HET: GDU FAD; 2.36A {Deinococcus radiodurans} PDB: 3hdy_A* 3he3_A*
Probab=54.79  E-value=8.6  Score=17.70  Aligned_cols=43  Identities=19%  Similarity=0.319  Sum_probs=31.0

Q ss_pred             CCCCCEEEEECCCCCHHHHH--HHHCCCCEEEEECCCCCCHHHHHH
Q ss_conf             89998799975898823467--750235259984255430368878
Q gi|254780398|r   45 SLDGITVIEIGAGPGNLTQM--LLTLGARKVIVIEKDQQFFPILKD   88 (284)
Q Consensus        45 ~~~~~~VlEIGpG~G~LT~~--Ll~~~~~~v~aiEiD~~~~~~l~~   88 (284)
                      ..++-.|+=||+|+..||-+  |.+++ ..|+.+|.+.+.=...+.
T Consensus        26 ~~~~yDviIIGaG~sGL~aA~~L~k~G-~~V~v~Ek~~~iGG~~~t   70 (397)
T 3hdq_A           26 ESKGFDYLIVGAGFAGSVLAERLASSG-QRVLIVDRRPHIGGNAYD   70 (397)
T ss_dssp             CCCCEEEEEECCSHHHHHHHHHHHHTT-CCEEEECSSSSSSGGGCC
T ss_pred             CCCCCCEEEECCCHHHHHHHHHHHHCC-CCEEEEECCCCCCCEEEE
T ss_conf             068899899897189999999998589-967999768977060789


No 292
>3iht_A S-adenosyl-L-methionine methyl transferase; YP_165822.1, structural genomics, joint center for structural genomics, JCSG; HET: MSE SAM; 1.80A {Ruegeria pomeroyi dss-3}
Probab=54.19  E-value=11  Score=17.10  Aligned_cols=66  Identities=24%  Similarity=0.380  Sum_probs=42.1

Q ss_pred             HHHHHHHHCCCCCCCEEEEECCCCCHHHHHHHHCCC-CEEEEECCCCCCHHHHHHHHHHHHCCCCCCHHHHCCC
Q ss_conf             999999971989998799975898823467750235-2599842554303688787532200122000000014
Q gi|254780398|r   35 ILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGA-RKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKV  107 (284)
Q Consensus        35 i~~~iv~~~~~~~~~~VlEIGpG~G~LT~~Ll~~~~-~~v~aiEiD~~~~~~l~~~~~~~~~~~~ii~~Dal~~  107 (284)
                      +++..++.+...+| .|+|+|.+.|.-...|.+.-+ +.|++.+-=..+.+      ...+++++++.||+-+.
T Consensus        29 ~l~~a~~~~~~~~G-~vlE~Gv~~G~s~~~l~~~l~~r~i~gFDtF~g~~~------~~~~~~~~lv~G~~~eT   95 (174)
T 3iht_A           29 CLEHAIAQTAGLSG-PVYELGLGNGRTYHHLRQHVQGREIYVFERAVASHP------DSTPPEAQLILGDIRET   95 (174)
T ss_dssp             HHHHHHHHTTTCCS-CEEEECCTTCHHHHHHHHHCCSSCEEEEESSCCCCG------GGCCCGGGEEESCHHHH
T ss_pred             HHHHHHHHHCCCCC-CEEEEECCCCHHHHHHHHHCCCCEEEEEEECCCCCC------CCCCCCCEEEEECCHHH
T ss_conf             99999986268998-689984147644999998779986999976357899------89999747983071777


No 293
>3im8_A Malonyl acyl carrier protein transacylase; fatty acid synthesis, malonyl-COA, acyl carrier protein TRAN (MCAT), FABD, acyltransferase; 2.10A {Streptococcus pneumoniae}
Probab=53.91  E-value=10  Score=17.25  Aligned_cols=26  Identities=23%  Similarity=0.348  Sum_probs=14.3

Q ss_pred             HHCCCCCCCEEEEECCCCCHHHHHHHHCCC
Q ss_conf             971989998799975898823467750235
Q gi|254780398|r   41 ESSGSLDGITVIEIGAGPGNLTQMLLTLGA   70 (284)
Q Consensus        41 ~~~~~~~~~~VlEIGpG~G~LT~~Ll~~~~   70 (284)
                      +..++.+ +.+  +|-..|-+|-. ...++
T Consensus        77 ~~~Gi~P-~~v--~GhSlGE~aA~-~~aG~  102 (307)
T 3im8_A           77 QEKGYQP-DMV--AGLSLGEYSAL-VASGA  102 (307)
T ss_dssp             HHTTCCC-SEE--EESTTHHHHHH-HHTTS
T ss_pred             HHCCCCC-CEE--ECCCHHHHHHH-HHCCC
T ss_conf             9749987-488--11774189998-61899


No 294
>2oo3_A Protein involved in catabolism of external DNA; structural genomics, unknown function, PSI-2, protein structure initiative; 2.00A {Legionella pneumophila subsp} SCOP: c.66.1.59
Probab=53.66  E-value=4.5  Score=19.42  Aligned_cols=120  Identities=8%  Similarity=0.002  Sum_probs=75.3

Q ss_pred             HHHHHCCCCCCCEEEEECCCCCHHHHHHHHCCCCEEEEECCCCCCHHHHHHHHHHHHCCCCCCHHHHCCCCHHHHCCCCC
Q ss_conf             99997198999879997589882346775023525998425543036887875322001220000000143155213322
Q gi|254780398|r   38 KIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISS  117 (284)
Q Consensus        38 ~iv~~~~~~~~~~VlEIGpG~G~LT~~Ll~~~~~~v~aiEiD~~~~~~l~~~~~~~~~~~~ii~~Dal~~d~~~~~~~~~  117 (284)
                      .+++..+...+   +..=||--.+...+++.. .+++++|.-+.-++.|++.+...+ ++.+.+.|..+--..-+.+.+.
T Consensus        85 ~~v~~~n~~~~---l~~YPGSP~ia~~llR~q-Drl~l~ELHp~d~~~L~~~~~~~~-~~~v~~~DG~~~l~allPP~er  159 (283)
T 2oo3_A           85 SVIKQINLNST---LSYYPGSPYFAINQLRSQ-DRLYLCELHPTEYNFLLKLPHFNK-KVYVNHTDGVSKLNALLPPPEK  159 (283)
T ss_dssp             HHHHHHSSSSS---CCEEECHHHHHHHHSCTT-SEEEEECCSHHHHHHHTTSCCTTS-CEEEECSCHHHHHHHHCSCTTS
T ss_pred             HHHHHHCCCCC---CCCCCCCHHHHHHHCCCC-CEEEEEECCHHHHHHHHHHHCCCC-CCEEEECCHHHHHHHHCCCCCC
T ss_conf             99998668999---787898899999858956-749998468789999998725387-7569816578899866799878


Q ss_pred             CEEEEECCCHHHHHHH--HHHHHHHHCCCCCCCHHHHEE-----EHHHHHHHHH
Q ss_conf             2011202322467889--999985201000000110203-----3447887530
Q gi|254780398|r  118 PIRIIANLPYNIGTRL--LFNWISADTWPPFWESLTLLF-----QKEVGERITA  164 (284)
Q Consensus       118 ~~~vvgNLPYnIss~I--l~~ll~~~~~~~~~~~~vlmv-----QkEvA~Rl~a  164 (284)
                      .--|.=--||-+.+..  +...+....  ..|...++++     +.+-.+++..
T Consensus       160 RgLVLIDPpYE~k~Ey~~v~~~l~~a~--kR~~~G~~~iWYPi~~~~~~~~~~~  211 (283)
T 2oo3_A          160 RGLIFIDPSYERKEEYKEIPYAIKNAY--SKFSTGLYCVWYPVVNKAWTEQFLR  211 (283)
T ss_dssp             CEEEEECCCCCSTTHHHHHHHHHHHHH--HHCTTSEEEEEEEESSHHHHHHHHH
T ss_pred             CEEEEECCCCCCHHHHHHHHHHHHHHH--HHCCCCEEEEEEECCCHHHHHHHHH
T ss_conf             668995798665438999999999999--8666865999820456088899999


No 295
>2ku7_A MLL1 PHD3-CYP33 RRM chimeric protein; transcriptional regulation, RRM domain, transcr; NMR {Homo sapiens}
Probab=53.13  E-value=6.2  Score=18.59  Aligned_cols=24  Identities=8%  Similarity=0.184  Sum_probs=19.6

Q ss_pred             CCEEEEECCCHHHHHHHHHHHHHH
Q ss_conf             220112023224678899999852
Q gi|254780398|r  117 SPIRIIANLPYNIGTRLLFNWISA  140 (284)
Q Consensus       117 ~~~~vvgNLPYnIss~Il~~ll~~  140 (284)
                      .....|||||++++..-|..+++.
T Consensus        63 krtLfVgNLp~~vte~~L~~~F~~   86 (140)
T 2ku7_A           63 KRVLYVGGLAEEVDDKVLHAAFIP   86 (140)
T ss_dssp             CCEEEEECCCTTCCHHHHHHHHGG
T ss_pred             CCEEEECCCCCCCCHHHHHHHHHH
T ss_conf             779999298983869999999972


No 296
>2b4q_A Rhamnolipids biosynthesis 3-oxoacyl-[acyl- carrier-protein] reductase; RHLG-NADP complex, oxidoreductase; HET: NAP; 2.30A {Pseudomonas aeruginosa}
Probab=52.88  E-value=11  Score=16.97  Aligned_cols=61  Identities=23%  Similarity=0.244  Sum_probs=45.1

Q ss_pred             CCCCEEEEECCCCC---HHHHHHHHCCCCEEEEECCCCCCHHHHHHHHHHHHCCCCCCHHHHCCCC
Q ss_conf             99987999758988---2346775023525998425543036887875322001220000000143
Q gi|254780398|r   46 LDGITVIEIGAGPG---NLTQMLLTLGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVD  108 (284)
Q Consensus        46 ~~~~~VlEIGpG~G---~LT~~Ll~~~~~~v~aiEiD~~~~~~l~~~~~~~~~~~~ii~~Dal~~d  108 (284)
                      .+++.+|=.|.+.|   ++.+.|++.++ +|+.+.+|..-.+.+.+..... +++..+.+|+.+.+
T Consensus        27 L~gKvalVTGas~GIG~aia~~la~~Ga-~V~i~~r~~~~l~~~~~~l~~~-g~~~~~~~Dv~~~~   90 (276)
T 2b4q_A           27 LAGRIALVTGGSRGIGQMIAQGLLEAGA-RVFICARDAEACADTATRLSAY-GDCQAIPADLSSEA   90 (276)
T ss_dssp             CTTCEEEEETTTSHHHHHHHHHHHHTTC-EEEEECSCHHHHHHHHHHHTTS-SCEEECCCCTTSHH
T ss_pred             CCCCEEEEECCCCHHHHHHHHHHHHCCC-EEEEEECCHHHHHHHHHHHHCC-CCEEEEEECCCCHH
T ss_conf             9998799928887899999999998699-8999979889999999997504-98799990289999


No 297
>1rjd_A PPM1P, carboxy methyl transferase for protein phosphatase 2A catalytic subunit; SAM dependent methyltransferase; HET: SAM; 1.80A {Saccharomyces cerevisiae} SCOP: c.66.1.37 PDB: 1rje_A* 1rjf_A 1rjg_A* 2ob2_A* 2ob1_A
Probab=52.51  E-value=11  Score=16.94  Aligned_cols=41  Identities=20%  Similarity=0.256  Sum_probs=30.5

Q ss_pred             CCCEEEEECCCCCHHHHHHHHCCCCEEEEECCCCCCHHHHHH
Q ss_conf             998799975898823467750235259984255430368878
Q gi|254780398|r   47 DGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKD   88 (284)
Q Consensus        47 ~~~~VlEIGpG~G~LT~~Ll~~~~~~v~aiEiD~~~~~~l~~   88 (284)
                      +..-|+-+|+|.-..--.|....+ ++..+|+|-.-+-..|.
T Consensus        97 ~~~QVV~LGaG~DTr~~Rl~~~~~-~v~~~EvD~P~v~~~K~  137 (334)
T 1rjd_A           97 EKVQVVNLGCGSDLRMLPLLQMFP-HLAYVDIDYNESVELKN  137 (334)
T ss_dssp             SSEEEEEETCTTCCTHHHHHHHCT-TEEEEEEECHHHHHHHH
T ss_pred             CCCEEEEECCCCCCHHHHHHCCCC-CCEEEECCCHHHHHHHH
T ss_conf             982899958632446777425389-97799797578999999


No 298
>3ijr_A Oxidoreductase, short chain dehydrogenase/reductase family; structural genomics, infectious diseases; HET: NAD; 2.05A {Bacillus anthracis str} PDB: 3i3o_A*
Probab=51.67  E-value=12  Score=16.85  Aligned_cols=63  Identities=16%  Similarity=0.201  Sum_probs=44.7

Q ss_pred             CCCCCEEEEECCCCC---HHHHHHHHCCCCEEEEECCCCC-CHHHHHHHHHHHHCCCCCCHHHHCCCC
Q ss_conf             899987999758988---2346775023525998425543-036887875322001220000000143
Q gi|254780398|r   45 SLDGITVIEIGAGPG---NLTQMLLTLGARKVIVIEKDQQ-FFPILKDISSQHPNRLEIIQDDALKVD  108 (284)
Q Consensus        45 ~~~~~~VlEIGpG~G---~LT~~Ll~~~~~~v~aiEiD~~-~~~~l~~~~~~~~~~~~ii~~Dal~~d  108 (284)
                      ..+++.+|=-|.+.|   ++.+.|++.++ +|+...+|.. ..+.+.+.......++..+.+|+.+.+
T Consensus        44 rL~gKvalITGas~GIG~aiA~~la~~Ga-~V~l~~r~~~~~~~~~~~~~~~~g~~~~~~~~Dvt~~~  110 (291)
T 3ijr_A           44 KLKGKNVLITGGDSGIGRAVSIAFAKEGA-NIAIAYLDEEGDANETKQYVEKEGVKCVLLPGDLSDEQ  110 (291)
T ss_dssp             TTTTCEEEEETTTSHHHHHHHHHHHHTTC-EEEEEESSCHHHHHHHHHHHHTTTCCEEEEESCTTSHH
T ss_pred             CCCCCEEEEECCCCHHHHHHHHHHHHCCC-EEEEEECCCHHHHHHHHHHHHHCCCCEEEEECCCCCHH
T ss_conf             88989899938887899999999998799-89999798065799999999964992899977789999


No 299
>1fmc_A 7 alpha-hydroxysteroid dehydrogenase; short-chain dehydrogenase/reductase, bIle acid catabolism, oxidoreductase; HET: CHO NAD; 1.80A {Escherichia coli} SCOP: c.2.1.2 PDB: 1ahi_A* 1ahh_A*
Probab=51.16  E-value=12  Score=16.80  Aligned_cols=113  Identities=17%  Similarity=0.146  Sum_probs=63.8

Q ss_pred             CCCCEEEEECCCCC---HHHHHHHHCCCCEEEEECCCCCCHHHHHHHHHHHHCCCCCCHHHHCCCCH-HHHC----CC-C
Q ss_conf             99987999758988---23467750235259984255430368878753220012200000001431-5521----33-2
Q gi|254780398|r   46 LDGITVIEIGAGPG---NLTQMLLTLGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDF-EKFF----NI-S  116 (284)
Q Consensus        46 ~~~~~VlEIGpG~G---~LT~~Ll~~~~~~v~aiEiD~~~~~~l~~~~~~~~~~~~ii~~Dal~~d~-~~~~----~~-~  116 (284)
                      .+++.+|=-|.+.|   ++.+.+++.++ +|+...+++.-.+.+.+.......++..+.+|+.+.+- ..+.    .. +
T Consensus         9 L~gKvalITGas~GIG~aia~~la~~Ga-~V~i~~r~~~~~~~~~~~l~~~g~~~~~~~~Dv~~~~~v~~~~~~~~~~~G   87 (255)
T 1fmc_A            9 LDGKCAIITGAGAGIGKEIAITFATAGA-SVVVSDINADAANHVVDEIQQLGGQAFACRCDITSEQELSALADFAISKLG   87 (255)
T ss_dssp             CTTCEEEETTTTSHHHHHHHHHHHTTTC-EEEEEESCHHHHHHHHHHHHHTTCCEEEEECCTTCHHHHHHHHHHHHHHHS
T ss_pred             CCCCEEEEECCCCHHHHHHHHHHHHCCC-EEEEEECCHHHHHHHHHHHHHCCCCEEEEEECCCCHHHHHHHHHHHHHHCC
T ss_conf             9999899938975899999999998799-899997998999999999996399389999228999999999999999749


Q ss_pred             CCEEEEEC------CCHHHHHHHHHHHHHHHCCCCCCCHHHHEEEHHHHHHHHHC
Q ss_conf             22011202------32246788999998520100000011020334478875301
Q gi|254780398|r  117 SPIRIIAN------LPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQ  165 (284)
Q Consensus       117 ~~~~vvgN------LPYnIss~Il~~ll~~~~~~~~~~~~vlmvQkEvA~Rl~a~  165 (284)
                      .--.+|-|      -|+.++..-..+.+.-+.      ...+.+-++++..|...
T Consensus        88 ~iDiLVnnAG~~~~~~~~~~~~~~~~~~~vNl------~g~~~~~~~~~~~m~~~  136 (255)
T 1fmc_A           88 KVDILVNNAGGGGPKPFDMPMADFRRAYELNV------FSFFHLSQLVAPEMEKN  136 (255)
T ss_dssp             SCCEEEECCCCCCCCCTTCCHHHHHHHHHHHT------HHHHHHHHHHHHHHHHH
T ss_pred             CCCEEEECCCCCCCCCCCCCHHHHHHHHHHHH------HHHHHHHHHHHHHHHHC
T ss_conf             99899989999999977599999999999986------89999999999999972


No 300
>1v0j_A UDP-galactopyranose mutase; flavoprotein, isomerase; HET: FAD BCN; 2.25A {Mycobacterium tuberculosis}
Probab=50.16  E-value=7.9  Score=17.91  Aligned_cols=41  Identities=20%  Similarity=0.195  Sum_probs=30.3

Q ss_pred             CCEEEEECCCCCHHHHH--HHHCCCCEEEEECCCCCCHHHHHH
Q ss_conf             98799975898823467--750235259984255430368878
Q gi|254780398|r   48 GITVIEIGAGPGNLTQM--LLTLGARKVIVIEKDQQFFPILKD   88 (284)
Q Consensus        48 ~~~VlEIGpG~G~LT~~--Ll~~~~~~v~aiEiD~~~~~~l~~   88 (284)
                      .-.|+=||+|...||-+  |+++....|+.+|.+.++=..+..
T Consensus         7 k~dvvIIGaG~sGL~aA~~L~~~~g~~V~l~E~~~~~GG~~~t   49 (399)
T 1v0j_A            7 RFDLFVVGSGFFGLTIAERVATQLDKRVLVLERRPHIGGNAYS   49 (399)
T ss_dssp             SCSEEEECCSHHHHHHHHHHHHHSCCCEEEECSSSSSSGGGCE
T ss_pred             CCCEEEECCHHHHHHHHHHHHHHCCCCEEEEECCCCCCCEEEE
T ss_conf             8999999941999999999998689988999799977470316


No 301
>3ctm_A Carbonyl reductase; alcohol dehydrogenase, short-chain dehydrogenases/reductases (SDR), X-RAY crystallography, oxidoreductase; 2.69A {Candida parapsilosis}
Probab=50.06  E-value=12  Score=16.70  Aligned_cols=62  Identities=11%  Similarity=0.068  Sum_probs=45.5

Q ss_pred             CCCCEEEEECCCCCH---HHHHHHHCCCCEEEEECCCCCCHHHHHHHHHHHHCCCCCCHHHHCCCC
Q ss_conf             999879997589882---346775023525998425543036887875322001220000000143
Q gi|254780398|r   46 LDGITVIEIGAGPGN---LTQMLLTLGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVD  108 (284)
Q Consensus        46 ~~~~~VlEIGpG~G~---LT~~Ll~~~~~~v~aiEiD~~~~~~l~~~~~~~~~~~~ii~~Dal~~d  108 (284)
                      .+++.+|=.|.+.|.   +.+.|++.++ +|+...++....+.+++.......++..+.+|+.+.+
T Consensus        32 L~gKvalVTGas~GIG~aiA~~la~~Ga-~V~i~~r~~~~~~~~~~~~~~~g~~~~~~~~Dvs~~~   96 (279)
T 3ctm_A           32 LKGKVASVTGSSGGIGWAVAEAYAQAGA-DVAIWYNSHPADEKAEHLQKTYGVHSKAYKCNISDPK   96 (279)
T ss_dssp             CTTCEEEETTTTSSHHHHHHHHHHHHTC-EEEEEESSSCCHHHHHHHHHHHCSCEEEEECCTTCHH
T ss_pred             CCCCEEEEECCCCHHHHHHHHHHHHCCC-EEEEEECCHHHHHHHHHHHHHCCCCEEEEEEECCCHH
T ss_conf             8999899948786999999999998799-8999968868899999999865995699995279999


No 302
>1nm2_A Malonyl COA:acyl carrier protein malonyltransferase; alpha/beta hydrolase-like core; 2.00A {Streptomyces coelicolor A3} SCOP: c.19.1.1 d.58.23.1 PDB: 2cdh_4 2cf2_B
Probab=49.67  E-value=13  Score=16.66  Aligned_cols=13  Identities=23%  Similarity=0.496  Sum_probs=9.3

Q ss_pred             ECCCCCHHHHHHH
Q ss_conf             7589882346775
Q gi|254780398|r   54 IGAGPGNLTQMLL   66 (284)
Q Consensus        54 IGpG~G~LT~~Ll   66 (284)
                      +|-..|-++-..+
T Consensus        95 ~GhSlGE~aAl~~  107 (317)
T 1nm2_A           95 AGHSVGEITAAVF  107 (317)
T ss_dssp             EESTTHHHHHHHH
T ss_pred             EECCCCHHHHHHH
T ss_conf             7647267999987


No 303
>3k30_A Histamine dehydrogenase; 6-S-cysteinyl-FMN, ADP binding site, oxidoreductase; HET: FMN ADP; 2.70A {Pimelobacter simplex}
Probab=49.20  E-value=13  Score=16.61  Aligned_cols=37  Identities=27%  Similarity=0.378  Sum_probs=28.7

Q ss_pred             CCEEEEECCCCCHHHHH--HHHCCCCEEEEECCCCCCHHH
Q ss_conf             98799975898823467--750235259984255430368
Q gi|254780398|r   48 GITVIEIGAGPGNLTQM--LLTLGARKVIVIEKDQQFFPI   85 (284)
Q Consensus        48 ~~~VlEIGpG~G~LT~~--Ll~~~~~~v~aiEiD~~~~~~   85 (284)
                      ...|+=||.|++.|+-+  +++++. +|+.+|.+..+-..
T Consensus       391 ~KkV~VIGgGPAGL~AA~~la~~G~-~VtL~Ek~~~lGG~  429 (690)
T 3k30_A          391 DARVLVVGAGPSGLEAARALGVRGY-DVVLAEAGRDLGGR  429 (690)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHHHTC-EEEEECSSSSSCTH
T ss_pred             CCEEEEECCCHHHHHHHHHHHHCCC-CEEEEEECCCCCCE
T ss_conf             8679997965899999999997799-37897022776866


No 304
>1hxh_A 3BETA/17BETA-hydroxysteroid dehydrogenase; alpha-beta, rossmann fold, short-chain dehydrogenase, oxidoreductase; 1.22A {Comamonas testosteroni} SCOP: c.2.1.2
Probab=49.01  E-value=13  Score=16.60  Aligned_cols=60  Identities=22%  Similarity=0.269  Sum_probs=42.9

Q ss_pred             CCCCCEEEEECCCCC---HHHHHHHHCCCCEEEEECCCCCCHHHHHHHHHHHHCCCCCCHHHHCCCC
Q ss_conf             899987999758988---2346775023525998425543036887875322001220000000143
Q gi|254780398|r   45 SLDGITVIEIGAGPG---NLTQMLLTLGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVD  108 (284)
Q Consensus        45 ~~~~~~VlEIGpG~G---~LT~~Ll~~~~~~v~aiEiD~~~~~~l~~~~~~~~~~~~ii~~Dal~~d  108 (284)
                      ..+++.+|=.|.+.|   ++.+.|++.++ +|+...+++.-.+.+.+.+   .++...+.+|..+.+
T Consensus         3 rL~gKvalITGas~GIG~aia~~la~~Ga-~V~~~~r~~~~l~~~~~~l---~~~~~~~~~Dvt~~~   65 (253)
T 1hxh_A            3 RLQGKVALVTGGASGVGLEVVKLLLGEGA-KVAFSDINEAAGQQLAAEL---GERSMFVRHDVSSEA   65 (253)
T ss_dssp             TTTTCEEEETTTTSHHHHHHHHHHHHTTC-EEEEECSCHHHHHHHHHHH---CTTEEEECCCTTCHH
T ss_pred             CCCCCEEEEECCCCHHHHHHHHHHHHCCC-EEEEEECCHHHHHHHHHHH---CCCEEEEEECCCCHH
T ss_conf             88998899948887899999999998799-9999979999999999983---896599980179999


No 305
>3gmb_A 2-methyl-3-hydroxypyridine-5-carboxylic acid oxygenase; flavin monooxygenase, oxidoreductase; HET: FAD; 2.10A {Mesorhizobium loti} PDB: 3gmc_A*
Probab=48.84  E-value=11  Score=17.10  Aligned_cols=37  Identities=22%  Similarity=0.162  Sum_probs=28.1

Q ss_pred             CCCCCEEEEECCCCCHHHHHHH--HCCCCEEEEECCCCCC
Q ss_conf             8999879997589882346775--0235259984255430
Q gi|254780398|r   45 SLDGITVIEIGAGPGNLTQMLL--TLGARKVIVIEKDQQF   82 (284)
Q Consensus        45 ~~~~~~VlEIGpG~G~LT~~Ll--~~~~~~v~aiEiD~~~   82 (284)
                      +.....|+=||+|+..||-++.  +++. .|+.+|.++.+
T Consensus        44 p~~~~~V~IVGaGpaGl~~A~~Lar~G~-~V~VlEr~~~~   82 (415)
T 3gmb_A           44 PGKTRRAEVAGGGFAGLTAAIALKQNGW-DVRLHEKSSEL   82 (415)
T ss_dssp             ---CCEEEEECCSHHHHHHHHHHHHTTC-EEEEECSSSSC
T ss_pred             CCCCCEEEEECCCHHHHHHHHHHHHCCC-CEEEECCCCCC
T ss_conf             8998989998967899999999996899-99999379998


No 306
>2vou_A 2,6-dihydroxypyridine hydroxylase; oxidoreductase, plasmid, aromatic hydroxylase, nicotine degradation, flavin mono-oxygenase; HET: FAD; 2.6A {Arthrobacter nicotinovorans} SCOP: c.3.1.2 d.16.1.2
Probab=48.51  E-value=13  Score=16.68  Aligned_cols=35  Identities=26%  Similarity=0.290  Sum_probs=26.1

Q ss_pred             CCCEEEEECCCCCHHHHHHH--HCCCCEEEEECCCCCC
Q ss_conf             99879997589882346775--0235259984255430
Q gi|254780398|r   47 DGITVIEIGAGPGNLTQMLL--TLGARKVIVIEKDQQF   82 (284)
Q Consensus        47 ~~~~VlEIGpG~G~LT~~Ll--~~~~~~v~aiEiD~~~   82 (284)
                      ..+.|+=||+|+..||-+++  +.+. +|+.+|++++.
T Consensus         4 ~~~~V~IiGaG~aGl~~A~~L~~~G~-~v~v~Er~~~~   40 (397)
T 2vou_A            4 TTDRIAVVGGSISGLTAALMLRDAGV-DVDVYERSPQP   40 (397)
T ss_dssp             CCSEEEEECCSHHHHHHHHHHHHTTC-EEEEECSSSSS
T ss_pred             CCCEEEEECCCHHHHHHHHHHHHCCC-CEEEEECCCCC
T ss_conf             99819998978899999999997899-99999789998


No 307
>1ae1_A Tropinone reductase-I; oxidoreductase, tropane alkaloid biosynthesis, reduction of tropinone to tropine, short-chain dehydrogenase; HET: NAP; 2.40A {Datura stramonium} SCOP: c.2.1.2
Probab=47.55  E-value=14  Score=16.45  Aligned_cols=62  Identities=23%  Similarity=0.263  Sum_probs=43.8

Q ss_pred             CCCCEEEEECCCCC---HHHHHHHHCCCCEEEEECCCCCCHHHHHHHHHHHHCCCCCCHHHHCCCC
Q ss_conf             99987999758988---2346775023525998425543036887875322001220000000143
Q gi|254780398|r   46 LDGITVIEIGAGPG---NLTQMLLTLGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVD  108 (284)
Q Consensus        46 ~~~~~VlEIGpG~G---~LT~~Ll~~~~~~v~aiEiD~~~~~~l~~~~~~~~~~~~ii~~Dal~~d  108 (284)
                      .+++.+|=.|.+.|   ++.+.|++.++ +|+.+.+|+.-.+.+.+.......+...+.+|..+.+
T Consensus        19 L~GK~alITGas~GIG~aiA~~la~~Ga-~V~~~~r~~~~l~~~~~~~~~~g~~~~~~~~Dv~~~~   83 (273)
T 1ae1_A           19 LKGTTALVTGGSKGIGYAIVEELAGLGA-RVYTCSRNEKELDECLEIWREKGLNVEGSVCDLLSRT   83 (273)
T ss_dssp             CTTCEEEEESCSSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHHHHHTTCCEEEEECCTTCHH
T ss_pred             CCCCEEEEECCCCHHHHHHHHHHHHCCC-EEEEEECCHHHHHHHHHHHHHCCCCEEEEECCCCCHH
T ss_conf             9999899928886999999999998799-9999979989999999999832995489982589999


No 308
>2cjk_A Nuclear polyadenylated RNA-binding protein 4; HRP1, RNA-binding, RNA processing, mRNA processing, nonsense-mediated mRNA decay, cleavage; NMR {Saccharomyces cerevisiae} PDB: 2km8_C
Probab=47.20  E-value=5.7  Score=18.79  Aligned_cols=22  Identities=5%  Similarity=0.131  Sum_probs=15.6

Q ss_pred             EEEEECCCHHHHHHHHHHHHHH
Q ss_conf             0112023224678899999852
Q gi|254780398|r  119 IRIIANLPYNIGTRLLFNWISA  140 (284)
Q Consensus       119 ~~vvgNLPYnIss~Il~~ll~~  140 (284)
                      ...|+|||++++-.-|..+++.
T Consensus        89 ~i~V~~l~~~~te~~l~~~F~~  110 (167)
T 2cjk_A           89 KIFVGGIGPDVRPKEFEEFFSQ  110 (167)
T ss_dssp             EEEEEEECTTCCHHHHHHHHHT
T ss_pred             EEEECCCCCCCCHHHHHHHHHH
T ss_conf             6897068999999999999986


No 309
>1iqt_A AUF1, heterogeneous nuclear ribonucleoprotein D0; RNA-binding protein, hnRNP, telomere, DNA-binding protein, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 1wtb_A 1x0f_A
Probab=47.03  E-value=7  Score=18.27  Aligned_cols=20  Identities=5%  Similarity=0.185  Sum_probs=17.2

Q ss_pred             EEECCCHHHHHHHHHHHHHH
Q ss_conf             12023224678899999852
Q gi|254780398|r  121 IIANLPYNIGTRLLFNWISA  140 (284)
Q Consensus       121 vvgNLPYnIss~Il~~ll~~  140 (284)
                      .||||||.++..-|..+...
T Consensus         3 fVgnL~~~~te~~l~~~F~~   22 (75)
T 1iqt_A            3 FVGGLSPDTPEEKIREYFGG   22 (75)
T ss_dssp             EESCCCSSCCHHHHHHHHHH
T ss_pred             EECCCCCCCCHHHHHHHHHH
T ss_conf             99289998979999999873


No 310
>2k4m_A TR8_protein, UPF0146 protein MTH_1000; alpha+beta, rossman fold, structural genomics, PSI-2; NMR {Methanothermobacterthermautotrophicus str}
Probab=47.01  E-value=14  Score=16.40  Aligned_cols=68  Identities=19%  Similarity=0.270  Sum_probs=42.4

Q ss_pred             CCCCCCCHHHHHHHHHHCCCCCCCEEEEECCCCC-HHHHHHHHCCCCEEEEECCCCCCHHHHHHHHHHHHCCCCCCHHHH
Q ss_conf             8411239899999999719899987999758988-234677502352599842554303688787532200122000000
Q gi|254780398|r   26 GQNFLLDLNILKKIAESSGSLDGITVIEIGAGPG-NLTQMLLTLGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDA  104 (284)
Q Consensus        26 GQnFL~d~~i~~~iv~~~~~~~~~~VlEIGpG~G-~LT~~Ll~~~~~~v~aiEiD~~~~~~l~~~~~~~~~~~~ii~~Da  104 (284)
                      |||-.  +.++..+++..  .+|..|+|||-|.- ..-..+.+.....+.++++.+.              .+.....|+
T Consensus        18 ~~~~w--d~la~~~~~q~--~~Ga~IIEVnvG~~~~va~~l~k~~~~~v~~~Di~P~--------------~ids~~dDv   79 (153)
T 2k4m_A           18 GSHMW--NDLAVYIIRCS--GPGTRVVEVGAGRFLYVSDYIRKHSKVDLVLTDIKPS--------------HGGIVRDDI   79 (153)
T ss_dssp             CCHHH--HHHHHHHHHHS--CSSSEEEEETCTTCCHHHHHHHHHSCCEEEEECSSCS--------------STTEECCCS
T ss_pred             CHHHH--HHHHHHHHHHC--CCCCEEEEECCCCCCCHHHHHHHHHCCEEEEECCCCC--------------CCCCCCCHH
T ss_conf             13329--99999999826--8998689974898620699999970966999507855--------------567764010


Q ss_pred             CCCCHHH
Q ss_conf             0143155
Q gi|254780398|r  105 LKVDFEK  111 (284)
Q Consensus       105 l~~d~~~  111 (284)
                      ++-++.-
T Consensus        80 ~ep~L~i   86 (153)
T 2k4m_A           80 TSPRMEI   86 (153)
T ss_dssp             SSCCHHH
T ss_pred             CCCHHHH
T ss_conf             1713476


No 311
>1sjr_A Polypyrimidine tract-binding protein 1; extended babbab motif, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 2adb_A
Probab=46.94  E-value=5.3  Score=18.98  Aligned_cols=21  Identities=29%  Similarity=0.373  Sum_probs=18.1

Q ss_pred             EEEECCCHHHHHHHHHHHHHH
Q ss_conf             112023224678899999852
Q gi|254780398|r  120 RIIANLPYNIGTRLLFNWISA  140 (284)
Q Consensus       120 ~vvgNLPYnIss~Il~~ll~~  140 (284)
                      ..|+||||.+|..-|..++..
T Consensus        49 v~V~NL~~~vt~~~L~~~F~~   69 (164)
T 1sjr_A           49 IIVENLFYPVTLDVLHQIFSK   69 (164)
T ss_dssp             EEECSCCSCCCHHHHHHHHHH
T ss_pred             EEEECCCCCCCHHHHHHHHHH
T ss_conf             999691999999999999701


No 312
>2jvr_A Nucleolar protein 3; RNA recognition motif, nucleus, phosphorylation, ribonucleoprotein, ribosome biogenesis, RNA-binding; NMR {Saccharomyces cerevisiae} PDB: 2osr_A
Probab=46.94  E-value=6.3  Score=18.55  Aligned_cols=21  Identities=19%  Similarity=0.109  Sum_probs=17.6

Q ss_pred             EEEECCCHHHHHHHHHHHHHH
Q ss_conf             112023224678899999852
Q gi|254780398|r  120 RIIANLPYNIGTRLLFNWISA  140 (284)
Q Consensus       120 ~vvgNLPYnIss~Il~~ll~~  140 (284)
                      ..|+||||+++.+-|..++..
T Consensus        31 l~V~NLp~~~t~~dl~~~f~~   51 (111)
T 2jvr_A           31 ITMKNLPEGCSWQDLKDLARE   51 (111)
T ss_dssp             EEEECSSCCCCHHHHHHHHHH
T ss_pred             EEEECCCCCCCHHHHHHHHHH
T ss_conf             999799999999999999987


No 313
>3lyl_A 3-oxoacyl-(acyl-carrier-protein) reductase; alpha and beta protein, NAD(P)-binding rossmann fold, csgid, oxidoreductase; 1.95A {Francisella tularensis subsp}
Probab=46.51  E-value=14  Score=16.35  Aligned_cols=61  Identities=13%  Similarity=0.156  Sum_probs=42.6

Q ss_pred             CCCEEEEECCCCC---HHHHHHHHCCCCEEEEECCCCCCHHHHHHHHHHHHCCCCCCHHHHCCCC
Q ss_conf             9987999758988---2346775023525998425543036887875322001220000000143
Q gi|254780398|r   47 DGITVIEIGAGPG---NLTQMLLTLGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVD  108 (284)
Q Consensus        47 ~~~~VlEIGpG~G---~LT~~Ll~~~~~~v~aiEiD~~~~~~l~~~~~~~~~~~~ii~~Dal~~d  108 (284)
                      +++.+|=-|.+.|   ++.+.+++.++ +|+.+.+++.-.+.+.+.+.....++..+.+|..+.+
T Consensus         4 ~~KvalITGas~GIG~aiA~~la~~Ga-~V~~~~r~~~~l~~~~~~l~~~g~~~~~~~~Dv~~~~   67 (247)
T 3lyl_A            4 NEKVALVTGASRGIGFEVAHALASKGA-TVVGTATSQASAEKFENSMKEKGFKARGLVLNISDIE   67 (247)
T ss_dssp             TTCEEEESSCSSHHHHHHHHHHHHTTC-EEEEEESSHHHHHHHHHHHHHTTCCEEEEECCTTCHH
T ss_pred             CCCEEEEECCCCHHHHHHHHHHHHCCC-EEEEEECCHHHHHHHHHHHHHCCCCEEEEEEECCCHH
T ss_conf             999999928886899999999998699-9999979889999999999854995899991079999


No 314
>1sez_A Protoporphyrinogen oxidase, mitochondrial; FAD-binding, para-hydroxy-benzoate-hydroxylase fold (PHBH- fold), monotopic membrane-binding domain; HET: FAD OMN TON; 2.90A {Nicotiana tabacum} SCOP: c.3.1.2 d.16.1.5
Probab=46.31  E-value=14  Score=16.34  Aligned_cols=35  Identities=31%  Similarity=0.369  Sum_probs=26.2

Q ss_pred             CCCEEEEECCCCCHHHHH--HHHCCCCEEEEECCCCCC
Q ss_conf             998799975898823467--750235259984255430
Q gi|254780398|r   47 DGITVIEIGAGPGNLTQM--LLTLGARKVIVIEKDQQF   82 (284)
Q Consensus        47 ~~~~VlEIGpG~G~LT~~--Ll~~~~~~v~aiEiD~~~   82 (284)
                      ..+.|+=||.|.+.||-+  |.+++. +|+.+|...+.
T Consensus        12 ~~kkVvIIGaG~aGL~aA~~L~~~G~-~V~VlE~~~~~   48 (504)
T 1sez_A           12 SAKRVAVIGAGVSGLAAAYKLKIHGL-NVTVFEAEGKA   48 (504)
T ss_dssp             -CCEEEEECCSHHHHHHHHHHHTTSC-EEEEECSSSSS
T ss_pred             CCCEEEEECCCHHHHHHHHHHHHCCC-CEEEECCCCCC
T ss_conf             98918998988899999999985899-99999189988


No 315
>1rkx_A CDP-glucose-4,6-dehydratase; SDR, lyase; HET: NAD; 1.80A {Yersinia pseudotuberculosis} SCOP: c.2.1.2 PDB: 1wvg_A*
Probab=46.21  E-value=14  Score=16.33  Aligned_cols=59  Identities=22%  Similarity=0.220  Sum_probs=38.4

Q ss_pred             CCCEEEEECCCCC----HHHHHHHHCCCCEEEEECCCCCCHHHHHHHHHHHHCCCCCCHHHHCCCC
Q ss_conf             9987999758988----2346775023525998425543036887875322001220000000143
Q gi|254780398|r   47 DGITVIEIGAGPG----NLTQMLLTLGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVD  108 (284)
Q Consensus        47 ~~~~VlEIGpG~G----~LT~~Ll~~~~~~v~aiEiD~~~~~~l~~~~~~~~~~~~ii~~Dal~~d  108 (284)
                      .++.||=.| |.|    .|.+.|++++. .|+++.++..-...+.+.... ..+++++.+|....+
T Consensus         8 ~~KkILVTG-gtGfIGs~L~~~Ll~~g~-~V~~~~r~~~~~~~~~~~~~~-~~~~~~~~~Dl~d~~   70 (357)
T 1rkx_A            8 QGKRVFVTG-HTGFKGGWLSLWLQTMGA-TVKGYSLTAPTVPSLFETARV-ADGMQSEIGDIRDQN   70 (357)
T ss_dssp             TTCEEEEET-TTSHHHHHHHHHHHHTTC-EEEEEESSCSSSSCHHHHTTT-TTTSEEEECCTTCHH
T ss_pred             CCCEEEEEC-CCCHHHHHHHHHHHHCCC-EEEEEECCCCCCHHHHHHHCC-CCCCEEEECCCCCHH
T ss_conf             959899968-997899999999997799-899997899861767765401-479769985368979


No 316
>3nrn_A Uncharacterized protein PF1083; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative; HET: AMP; 2.10A {Pyrococcus furiosus}
Probab=46.16  E-value=13  Score=16.60  Aligned_cols=14  Identities=21%  Similarity=0.202  Sum_probs=9.0

Q ss_pred             EEEECCCHHHHHHH
Q ss_conf             11202322467889
Q gi|254780398|r  120 RIIANLPYNIGTRL  133 (284)
Q Consensus       120 ~vvgNLPYnIss~I  133 (284)
                      .||+|+|...+.++
T Consensus       234 ~VI~a~~~~~~~~L  247 (421)
T 3nrn_A          234 VAISNVGVRETVKL  247 (421)
T ss_dssp             EEEECSCHHHHHHH
T ss_pred             EEEECCCHHHHHHH
T ss_conf             99997999999986


No 317
>1w6u_A 2,4-dienoyl-COA reductase, mitochondrial precursor; short chain dehydrogenase, beta- oxidation, NADP, oxidoreductase; HET: HXC NAP; 1.75A {Homo sapiens} SCOP: c.2.1.2 PDB: 1w73_A* 1w8d_A*
Probab=45.72  E-value=15  Score=16.28  Aligned_cols=63  Identities=30%  Similarity=0.474  Sum_probs=44.9

Q ss_pred             CCCCCEEEEECCCCC---HHHHHHHHCCCCEEEEECCCCCCHHHHH-HHHHHHHCCCCCCHHHHCCCC
Q ss_conf             899987999758988---2346775023525998425543036887-875322001220000000143
Q gi|254780398|r   45 SLDGITVIEIGAGPG---NLTQMLLTLGARKVIVIEKDQQFFPILK-DISSQHPNRLEIIQDDALKVD  108 (284)
Q Consensus        45 ~~~~~~VlEIGpG~G---~LT~~Ll~~~~~~v~aiEiD~~~~~~l~-~~~~~~~~~~~ii~~Dal~~d  108 (284)
                      ..+|+.+|=.|.+.|   ++.+.|++.++ +|+...++..-.+.+. ++.....+++..+.+|..+.+
T Consensus        23 ~L~GKvalVTGgs~GIG~aiA~~la~~Ga-~V~i~~r~~~~l~~~~~~l~~~~g~~~~~~~~Dls~~~   89 (302)
T 1w6u_A           23 SFQGKVAFITGGGTGLGKGMTTLLSSLGA-QCVIASRKMDVLKATAEQISSQTGNKVHAIQCDVRDPD   89 (302)
T ss_dssp             TTTTCEEEEETTTSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHHHHHHHSSCEEEEECCTTCHH
T ss_pred             CCCCCEEEEECCCCHHHHHHHHHHHHCCC-EEEEEECCHHHHHHHHHHHHHHHCCCEEEEEEECCCHH
T ss_conf             98999899937986899999999998799-89999798889999999998863992899993289999


No 318
>1rk8_A CG8781-PA, CG8781-PA protein; mRNA processing, RRM, RBD, NMD, oskar mRNA localization, translation; 1.90A {Drosophila melanogaster} SCOP: d.58.7.1 PDB: 1hl6_A
Probab=45.72  E-value=8.1  Score=17.87  Aligned_cols=22  Identities=5%  Similarity=0.013  Sum_probs=18.1

Q ss_pred             EEEEECCCHHHHHHHHHHHHHH
Q ss_conf             0112023224678899999852
Q gi|254780398|r  119 IRIIANLPYNIGTRLLFNWISA  140 (284)
Q Consensus       119 ~~vvgNLPYnIss~Il~~ll~~  140 (284)
                      ..+|||||+++|-.-|..++..
T Consensus        74 ~lfV~nLp~~~te~~L~~~F~~   95 (165)
T 1rk8_A           74 ILFVTSIHEEAQEDEIQEKFCD   95 (165)
T ss_dssp             EEEEESCCTTCCHHHHHHHHGG
T ss_pred             EEEECCCCCCCCHHHHHHHHHH
T ss_conf             8998189985889999999998


No 319
>2c07_A 3-oxoacyl-(acyl-carrier protein) reductase; oxidoreductase, FABG, short-chain alcohol reductase, fatty acid biosynthesis, apicoplast; 1.5A {Plasmodium falciparum} SCOP: c.2.1.2
Probab=45.36  E-value=15  Score=16.24  Aligned_cols=62  Identities=21%  Similarity=0.204  Sum_probs=42.9

Q ss_pred             CCCCEEEEECCCCC---HHHHHHHHCCCCEEEEECCCCCCHHHHHHHHHHHHCCCCCCHHHHCCCC
Q ss_conf             99987999758988---2346775023525998425543036887875322001220000000143
Q gi|254780398|r   46 LDGITVIEIGAGPG---NLTQMLLTLGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVD  108 (284)
Q Consensus        46 ~~~~~VlEIGpG~G---~LT~~Ll~~~~~~v~aiEiD~~~~~~l~~~~~~~~~~~~ii~~Dal~~d  108 (284)
                      .+++.+|=-|.+.|   ++.+.|++.++ +|+...+|+.-++.+.+.......+...+.+|+.+.+
T Consensus        42 lenKvalITGas~GIG~aiA~~la~~Ga-~Vvi~~r~~~~l~~~~~~l~~~g~~~~~~~~Dvtd~~  106 (285)
T 2c07_A           42 GENKVALVTGAGRGIGREIAKMLAKSVS-HVICISRTQKSCDSVVDEIKSFGYESSGYAGDVSKKE  106 (285)
T ss_dssp             CSSCEEEEESTTSHHHHHHHHHHTTTSS-EEEEEESSHHHHHHHHHHHHTTTCCEEEEECCTTCHH
T ss_pred             CCCCEEEEECCCCHHHHHHHHHHHHCCC-EEEEEECCHHHHHHHHHHHHHCCCCEEEEECCCCCHH
T ss_conf             8997899908887899999999998699-9999979999999999999963994899983489999


No 320
>2hzc_A Splicing factor U2AF 65 kDa subunit; RNA splicing, RRM, RNA recognition, alternative conformation, RNA binding protein; HET: P6G; 1.47A {Homo sapiens} PDB: 1u2f_A
Probab=45.01  E-value=7.7  Score=17.99  Aligned_cols=22  Identities=18%  Similarity=0.523  Sum_probs=17.3

Q ss_pred             EEEEECCCHHHHHHHHHHHHHH
Q ss_conf             0112023224678899999852
Q gi|254780398|r  119 IRIIANLPYNIGTRLLFNWISA  140 (284)
Q Consensus       119 ~~vvgNLPYnIss~Il~~ll~~  140 (284)
                      -..||||||+++-.-|..++..
T Consensus         8 rlyVgNLp~~~te~~l~~~f~~   29 (87)
T 2hzc_A            8 RLYVGNIPFGITEEAMMDFFNA   29 (87)
T ss_dssp             EEEEESCCTTCCHHHHHHHHHH
T ss_pred             EEEEECCCCCCCHHHHHHHHHH
T ss_conf             8999497985859999999998


No 321
>2dha_A FLJ20171 protein; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=44.69  E-value=13  Score=16.61  Aligned_cols=19  Identities=11%  Similarity=0.391  Sum_probs=16.1

Q ss_pred             EECCCHHHHHHHHHHHHHH
Q ss_conf             2023224678899999852
Q gi|254780398|r  122 IANLPYNIGTRLLFNWISA  140 (284)
Q Consensus       122 vgNLPYnIss~Il~~ll~~  140 (284)
                      |.||||+++-.=|..++..
T Consensus        28 v~nLP~~~te~dI~~~F~~   46 (123)
T 2dha_A           28 MRGLPFTATAEEVVAFFGQ   46 (123)
T ss_dssp             ECSCCTTCCHHHHHHHHHT
T ss_pred             EECCCCCCCHHHHHHHHHH
T ss_conf             8488987989999999997


No 322
>3im9_A MCAT, MCT, malonyl COA-acyl carrier protein transacylase; fatty acid synthesis, malonyl-COA: acyl carrier protein TRAN (MCAT), FABD; 1.46A {Staphylococcus aureus}
Probab=44.52  E-value=11  Score=16.95  Aligned_cols=12  Identities=17%  Similarity=0.562  Sum_probs=8.0

Q ss_pred             ECCCCCHHHHHH
Q ss_conf             758988234677
Q gi|254780398|r   54 IGAGPGNLTQML   65 (284)
Q Consensus        54 IGpG~G~LT~~L   65 (284)
                      +|-..|-+|-..
T Consensus        94 ~GhSlGE~aA~~  105 (316)
T 3im9_A           94 MGHSLGEYSSLV  105 (316)
T ss_dssp             EESTTHHHHHHH
T ss_pred             EECCHHHHHHHH
T ss_conf             446774899999


No 323
>3mdf_A Peptidyl-prolyl CIS-trans isomerase E; RRM domain, PHD finger, CYP33, MLL, RNA binding protein, ALT splicing, mRNA processing, mRNA splicing; 1.85A {Homo sapiens} PDB: 2kyx_A 3lpy_A*
Probab=44.05  E-value=12  Score=16.75  Aligned_cols=24  Identities=8%  Similarity=0.184  Sum_probs=18.9

Q ss_pred             CCEEEEECCCHHHHHHHHHHHHHH
Q ss_conf             220112023224678899999852
Q gi|254780398|r  117 SPIRIIANLPYNIGTRLLFNWISA  140 (284)
Q Consensus       117 ~~~~vvgNLPYnIss~Il~~ll~~  140 (284)
                      .....|||||++++..-|..++..
T Consensus         7 ~~~lfV~nLp~~~t~~~l~~~F~~   30 (85)
T 3mdf_A            7 KRVLYVGGLAEEVDDKVLHAAFIP   30 (85)
T ss_dssp             SSEEEEECCCTTCCHHHHHHHHGG
T ss_pred             CCEEEEECCCCCCCHHHHHHHHHH
T ss_conf             759999089986979999999986


No 324
>1d5t_A Guanine nucleotide dissociation inhibitor; ultra-high resolution, hydrolase inhibitor; 1.04A {Bos taurus} SCOP: c.3.1.3 d.16.1.6 PDB: 1lv0_A* 1gnd_A
Probab=44.05  E-value=12  Score=16.85  Aligned_cols=32  Identities=22%  Similarity=0.441  Sum_probs=23.6

Q ss_pred             EEEEECCCCCHHHHH--HHHCCCCEEEEECCCCCC
Q ss_conf             799975898823467--750235259984255430
Q gi|254780398|r   50 TVIEIGAGPGNLTQM--LLTLGARKVIVIEKDQQF   82 (284)
Q Consensus        50 ~VlEIGpG~G~LT~~--Ll~~~~~~v~aiEiD~~~   82 (284)
                      .|+=||+|.+.|+-+  |+++| ++|+.+|.....
T Consensus         8 DvvIIGaG~~Gl~aA~~La~~G-~~V~vlE~~~~~   41 (433)
T 1d5t_A            8 DVIVLGTGLTECILSGIMSVNG-KKVLHMDRNPYY   41 (433)
T ss_dssp             SEEEECCSHHHHHHHHHHHHTT-CCEEEECSSSSS
T ss_pred             CEEEECCCHHHHHHHHHHHHCC-CCEEEECCCCCC
T ss_conf             8899894989999999999879-989998889999


No 325
>1zk4_A R-specific alcohol dehydrogenase; short chain reductases/dehydrogenases, magnesium dependence, oxidoreductase; HET: NAP; 1.00A {Lactobacillus brevis} SCOP: c.2.1.2 PDB: 1nxq_A* 1zjy_A* 1zjz_A* 1zk0_A* 1zk1_A* 1zk2_A 1zk3_A
Probab=43.82  E-value=16  Score=16.10  Aligned_cols=63  Identities=22%  Similarity=0.360  Sum_probs=45.1

Q ss_pred             CCCCCCEEEEECCCCC---HHHHHHHHCCCCEEEEECCCCCCHHHHHHHHHHHHCCCCCCHHHHCCCC
Q ss_conf             9899987999758988---2346775023525998425543036887875322001220000000143
Q gi|254780398|r   44 GSLDGITVIEIGAGPG---NLTQMLLTLGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVD  108 (284)
Q Consensus        44 ~~~~~~~VlEIGpG~G---~LT~~Ll~~~~~~v~aiEiD~~~~~~l~~~~~~~~~~~~ii~~Dal~~d  108 (284)
                      +..+++.+|=-|.+.|   ++.+.|++.++ +|+...++.+..+.+.+.... ++++..+.+|+.+.+
T Consensus         2 nrL~gK~alVTGas~GIG~aia~~la~~Ga-~V~~~~r~~~~~~~~~~~~~~-~~~~~~~~~Dv~~~~   67 (251)
T 1zk4_A            2 NRLDGKVAIITGGTLGIGLAIATKFVEEGA-KVMITGRHSDVGEKAAKSVGT-PDQIQFFQHDSSDED   67 (251)
T ss_dssp             CTTTTCEEEETTTTSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHHHCC-TTTEEEEECCTTCHH
T ss_pred             CCCCCCEEEEECCCCHHHHHHHHHHHHCCC-EEEEEECCHHHHHHHHHHHCC-CCCEEEEECCCCCHH
T ss_conf             988998799948787899999999998799-999997987899999998578-995799982689999


No 326
>3md1_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RBD, RNP, poly(U) binding, acetylation, cytoplasm nucleus, RNA-binding; 1.60A {Saccharomyces cerevisiae}
Probab=43.27  E-value=8  Score=17.88  Aligned_cols=21  Identities=19%  Similarity=0.232  Sum_probs=17.6

Q ss_pred             EEEECCCHHHHHHHHHHHHHH
Q ss_conf             112023224678899999852
Q gi|254780398|r  120 RIIANLPYNIGTRLLFNWISA  140 (284)
Q Consensus       120 ~vvgNLPYnIss~Il~~ll~~  140 (284)
                      ..|||||++++.+-|..++..
T Consensus         4 lfV~nL~~~~te~~L~~~F~~   24 (83)
T 3md1_A            4 LFVGDLNVNVDDETLRNAFKD   24 (83)
T ss_dssp             EEEECCCTTCCHHHHHHHHTT
T ss_pred             EEEECCCCCCCHHHHHHHHHH
T ss_conf             999497985889999999975


No 327
>3gaf_A 7-alpha-hydroxysteroid dehydrogenase; seattle structural genomics center for infectious disease, ssgcid, oxidoreductase, structural genomics; 2.20A {Brucella melitensis}
Probab=42.65  E-value=16  Score=15.99  Aligned_cols=62  Identities=16%  Similarity=0.176  Sum_probs=43.2

Q ss_pred             CCCCEEEEECCCCC---HHHHHHHHCCCCEEEEECCCCCCHHHHHHHHHHHHCCCCCCHHHHCCCC
Q ss_conf             99987999758988---2346775023525998425543036887875322001220000000143
Q gi|254780398|r   46 LDGITVIEIGAGPG---NLTQMLLTLGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVD  108 (284)
Q Consensus        46 ~~~~~VlEIGpG~G---~LT~~Ll~~~~~~v~aiEiD~~~~~~l~~~~~~~~~~~~ii~~Dal~~d  108 (284)
                      .+++.+|=.|.+.|   ++.+.|++.++ +|+...++..-.+.+.+.+.....++..+.+|..+.+
T Consensus        10 L~gKvalITGas~GIG~aia~~la~~Ga-~V~~~~~~~~~~~~~~~~l~~~g~~~~~~~~Dv~~~~   74 (256)
T 3gaf_A           10 LNDAVAIVTGAAAGIGRAIAGTFAKAGA-SVVVTDLKSEGAEAVAAAIRQAGGKAIGLECNVTDEQ   74 (256)
T ss_dssp             CTTCEEEECSCSSHHHHHHHHHHHHHTC-EEEEEESSHHHHHHHHHHHHHTTCCEEEEECCTTCHH
T ss_pred             CCCCEEEEECCCCHHHHHHHHHHHHCCC-EEEEEECCHHHHHHHHHHHHHCCCCEEEEEECCCCHH
T ss_conf             9999899948676899999999998799-9999979889999999999964993899980189999


No 328
>2bry_A NEDD9 interacting protein with calponin homology and LIM domains; transport, coiled coil, cytoskeleton, FAD, flavoprotein, metal-binding, zinc; HET: FAD; 1.45A {Mus musculus} PDB: 2c4c_A* 2bra_A*
Probab=42.64  E-value=16  Score=16.09  Aligned_cols=52  Identities=23%  Similarity=0.457  Sum_probs=34.5

Q ss_pred             CCCCHHHHHHHHHHCC--------CCCCCEEEEECCCCCHHHHHH--HHCCCCEEEEECCCCC
Q ss_conf             1239899999999719--------899987999758988234677--5023525998425543
Q gi|254780398|r   29 FLLDLNILKKIAESSG--------SLDGITVIEIGAGPGNLTQML--LTLGARKVIVIEKDQQ   81 (284)
Q Consensus        29 FL~d~~i~~~iv~~~~--------~~~~~~VlEIGpG~G~LT~~L--l~~~~~~v~aiEiD~~   81 (284)
                      |=.-+.+-.+.-+.+.        ...+..|+=||+|+..||-++  ...|. +|+.+|..+.
T Consensus        65 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~VlIVGAGPaGL~~A~~La~~G~-~V~VlEk~~~  126 (497)
T 2bry_A           65 YWSAKSLWAKLDKRASQPVYQQGQACTNTKCLVVGAGPCGLRAAVELALLGA-RVVLVEKRIK  126 (497)
T ss_dssp             STTTHHHHHHHHHHHTSGGGGGGTTTTTCEEEEECCSHHHHHHHHHHHHTTC-EEEEEESCSS
T ss_pred             CEEHHHHCCCHHHHCCCCCCCCCCCCCCCEEEEECCCHHHHHHHHHHHHCCC-CEEEEECCCC
T ss_conf             4344332242645327455446887779849998988899999999997799-5899815899


No 329
>2cqp_A RNA-binding protein 12; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=42.22  E-value=11  Score=17.06  Aligned_cols=22  Identities=14%  Similarity=0.489  Sum_probs=17.5

Q ss_pred             EEEEECCCHHHHHHHHHHHHHH
Q ss_conf             0112023224678899999852
Q gi|254780398|r  119 IRIIANLPYNIGTRLLFNWISA  140 (284)
Q Consensus       119 ~~vvgNLPYnIss~Il~~ll~~  140 (284)
                      ...|+||||+++..=|..++..
T Consensus        17 ~i~v~nLp~~~t~~dl~~~F~~   38 (98)
T 2cqp_A           17 IIKVQNMPFTVSIDEILDFFYG   38 (98)
T ss_dssp             EEEEESCCTTCCHHHHHHHTTT
T ss_pred             EEEEECCCCCCCHHHHHHHHHH
T ss_conf             9999297998989999999997


No 330
>2eih_A Alcohol dehydrogenase; zinc ION binding protein, structural genomics, NPPSFA; 2.30A {Thermus thermophilus HB8}
Probab=42.17  E-value=16  Score=15.94  Aligned_cols=49  Identities=18%  Similarity=0.203  Sum_probs=32.9

Q ss_pred             HHCCCCCCCEEEEECCCC--CHHHHHHHHCCCCEEEEECCCCCCHHHHHHH
Q ss_conf             971989998799975898--8234677502352599842554303688787
Q gi|254780398|r   41 ESSGSLDGITVIEIGAGP--GNLTQMLLTLGARKVIVIEKDQQFFPILKDI   89 (284)
Q Consensus        41 ~~~~~~~~~~VlEIGpG~--G~LT~~Ll~~~~~~v~aiEiD~~~~~~l~~~   89 (284)
                      +.+++.++++|+=+|+|.  |.++..+++....+|++++.++.-.+.+++.
T Consensus       160 ~~~~~~~g~~VlV~Gag~~~g~~~~~la~~~g~~vi~~~~~~~~~~~~~~~  210 (343)
T 2eih_A          160 DKLGVRPGDDVLVMAAGSGVSVAAIQIAKLFGARVIATAGSEDKLRRAKAL  210 (343)
T ss_dssp             TTSCCCTTCEEEECSTTSTTHHHHHHHHHHTTCEEEEEESSHHHHHHHHHH
T ss_pred             HHHCCCCCCEEEEECCCHHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHC
T ss_conf             964969949999998978999999999998599999997999999999965


No 331
>2cpf_A RNA binding motif protein 19; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=42.15  E-value=11  Score=17.15  Aligned_cols=22  Identities=23%  Similarity=0.144  Sum_probs=18.2

Q ss_pred             EEEEECCCHHHHHHHHHHHHHH
Q ss_conf             0112023224678899999852
Q gi|254780398|r  119 IRIIANLPYNIGTRLLFNWISA  140 (284)
Q Consensus       119 ~~vvgNLPYnIss~Il~~ll~~  140 (284)
                      ...|+||||+++-.-|..++..
T Consensus         7 ~l~V~nLp~~~~e~~l~~~F~~   28 (98)
T 2cpf_A            7 GLFIKNLNFSTTEETLKGVFSK   28 (98)
T ss_dssp             CEEEESCCTTCCHHHHHHHHHT
T ss_pred             EEEEECCCCCCCHHHHHHHHHH
T ss_conf             9999399998999999999998


No 332
>1gte_A Dihydropyrimidine dehydrogenase; electron transfer, flavin, iron-sulfur clusters, pyrimidine catabolism, 5-fluorouracil degradation, oxidoreductase; HET: FMN FAD; 1.65A {Sus scrofa} SCOP: a.1.2.2 c.1.4.1 c.3.1.1 c.4.1.1 d.58.1.5 PDB: 1gt8_A* 1gth_A* 1h7w_A* 1h7x_A*
Probab=42.10  E-value=14  Score=16.31  Aligned_cols=31  Identities=32%  Similarity=0.464  Sum_probs=15.2

Q ss_pred             CCEEEEECCCCCHHH--HHHHHCCCCEEEEECC
Q ss_conf             987999758988234--6775023525998425
Q gi|254780398|r   48 GITVIEIGAGPGNLT--QMLLTLGARKVIVIEK   78 (284)
Q Consensus        48 ~~~VlEIGpG~G~LT--~~Ll~~~~~~v~aiEi   78 (284)
                      +..|+=||.|.-++-  ..+++.+++.|+.+..
T Consensus       332 gk~VvVIGGG~tA~D~A~ta~RlGA~~Vtiv~r  364 (1025)
T 1gte_A          332 RGAVIVLGAGDTAFDCATSALRCGARRVFLVFR  364 (1025)
T ss_dssp             CSEEEEECSSHHHHHHHHHHHHTTCSEEEEECS
T ss_pred             CCEEEEECCCHHHHHHHHHHHHCCCCEEEEEEC
T ss_conf             998999898799999999999859998999960


No 333
>2iid_A L-amino-acid oxidase; flavoenzyme, FAD binding domain, reaction mechanism, sustrate binding, oxidoreductase; HET: NAG FUC PHE FAD; 1.80A {Calloselasma rhodostoma} SCOP: c.3.1.2 d.16.1.5 PDB: 1f8s_A* 1f8r_A* 1reo_A* 1tdk_A* 1tdn_A* 1tdo_A*
Probab=42.08  E-value=17  Score=15.93  Aligned_cols=35  Identities=29%  Similarity=0.369  Sum_probs=24.6

Q ss_pred             CCEEEEECCCCCHHHH--HHHHCCCCEEEEECCCCCCH
Q ss_conf             9879997589882346--77502352599842554303
Q gi|254780398|r   48 GITVIEIGAGPGNLTQ--MLLTLGARKVIVIEKDQQFF   83 (284)
Q Consensus        48 ~~~VlEIGpG~G~LT~--~Ll~~~~~~v~aiEiD~~~~   83 (284)
                      ...|+=||+|.+.||-  .|.+.+. .|+.+|...++=
T Consensus        33 pk~V~IIGaGiaGLtAA~~L~~~G~-~V~vlEa~~~~G   69 (498)
T 2iid_A           33 PKHVVIVGAGMAGLSAAYVLAGAGH-QVTVLEASERPG   69 (498)
T ss_dssp             CCEEEEECCBHHHHHHHHHHHHHTC-EEEEECSSSSSB
T ss_pred             CCCEEEECCCHHHHHHHHHHHHCCC-CEEEEECCCCCC
T ss_conf             9988998978899999999986899-999995899884


No 334
>2f9d_A PRE-mRNA branch site protein P14; P14 SF3BP14 SF3B155 SAP155 RRM, RNA binding protein; 2.50A {Homo sapiens} SCOP: d.58.7.1 PDB: 2f9j_A 2fho_B
Probab=41.80  E-value=12  Score=16.82  Aligned_cols=23  Identities=30%  Similarity=0.551  Sum_probs=18.5

Q ss_pred             CEEEEECCCHHHHHHHHHHHHHH
Q ss_conf             20112023224678899999852
Q gi|254780398|r  118 PIRIIANLPYNIGTRLLFNWISA  140 (284)
Q Consensus       118 ~~~vvgNLPYnIss~Il~~ll~~  140 (284)
                      ....|+|||++++..-|..++..
T Consensus        19 ~~l~V~nLp~~~t~~~l~~~F~~   41 (125)
T 2f9d_A           19 RILYIRNLPYKITAEEMYDIFGK   41 (125)
T ss_dssp             SEEEEESCCTTCCHHHHHHHHHT
T ss_pred             CEEEEECCCCCCCHHHHHHHHHH
T ss_conf             99999399998999999999998


No 335
>1i8t_A UDP-galactopyranose mutase; rossman fold, FAD, contractase, isomerase; HET: FAD; 2.40A {Escherichia coli} SCOP: c.4.1.3 d.16.1.7
Probab=41.39  E-value=16  Score=16.00  Aligned_cols=38  Identities=29%  Similarity=0.253  Sum_probs=28.0

Q ss_pred             EEEEECCCCCHHHHH--HHHCCCCEEEEECCCCCCHHHHHH
Q ss_conf             799975898823467--750235259984255430368878
Q gi|254780398|r   50 TVIEIGAGPGNLTQM--LLTLGARKVIVIEKDQQFFPILKD   88 (284)
Q Consensus        50 ~VlEIGpG~G~LT~~--Ll~~~~~~v~aiEiD~~~~~~l~~   88 (284)
                      .|+=||+|...||-+  |.+++ .+|+.+|.+.+.=..++.
T Consensus         3 divIIGaG~sGL~aA~~L~~~g-~~V~vlEk~~~~GG~~~t   42 (367)
T 1i8t_A            3 DYIIVGSGLFGAVCANELKKLN-KKVLVIEKRNHIGGNAYT   42 (367)
T ss_dssp             EEEEECCSHHHHHHHHHHGGGT-CCEEEECSSSSSSGGGCE
T ss_pred             CEEEECCCHHHHHHHHHHHHCC-CCEEEEECCCCCCCCEEE
T ss_conf             5999888389999999999689-977999789977362888


No 336
>1u6f_A Tcubp1, RNA-binding protein UBP1; trypanosome, mRNA-binding protein, GU-rich RNA, structure; NMR {Trypanosoma cruzi} SCOP: d.58.7.1
Probab=41.32  E-value=10  Score=17.22  Aligned_cols=21  Identities=10%  Similarity=0.186  Sum_probs=17.8

Q ss_pred             EEEECCCHHHHHHHHHHHHHH
Q ss_conf             112023224678899999852
Q gi|254780398|r  120 RIIANLPYNIGTRLLFNWISA  140 (284)
Q Consensus       120 ~vvgNLPYnIss~Il~~ll~~  140 (284)
                      ..|||||++++..-|..++..
T Consensus        45 lfV~nLp~~~te~~L~~~F~~   65 (139)
T 1u6f_A           45 LMVNYIPTTVDEVQLRQLFER   65 (139)
T ss_dssp             EEEESCSTTCCHHHHHHHHHH
T ss_pred             EEEECCCCCCCHHHHHHHHHH
T ss_conf             999699986989999999985


No 337
>1x4a_A Splicing factor, arginine/serine-rich 1 (splicing factor 2, alternate splicing factor)...; structure genomics, SURP domain, splicing factor SF2; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=40.93  E-value=10  Score=17.18  Aligned_cols=21  Identities=24%  Similarity=0.262  Sum_probs=17.1

Q ss_pred             EEEECCCHHHHHHHHHHHHHH
Q ss_conf             112023224678899999852
Q gi|254780398|r  120 RIIANLPYNIGTRLLFNWISA  140 (284)
Q Consensus       120 ~vvgNLPYnIss~Il~~ll~~  140 (284)
                      ..|+||||+++..-|..++..
T Consensus        25 lfV~nLp~~~te~~L~~~F~~   45 (109)
T 1x4a_A           25 IYVGNLPPDIRTKDIEDVFYK   45 (109)
T ss_dssp             EEEESCCTTCCHHHHHHHHGG
T ss_pred             EEEECCCCCCCHHHHHHHHHH
T ss_conf             999798987989999999841


No 338
>1b37_A Protein (polyamine oxidase); flavin-dependent amine oxidase, oxidoreductase; HET: NAG FCA MAN FAD; 1.90A {Zea mays} SCOP: c.3.1.2 d.16.1.5 PDB: 1b5q_A* 1h81_A* 1h82_A* 1h83_A* 1h84_A* 1h86_A*
Probab=40.90  E-value=13  Score=16.52  Aligned_cols=35  Identities=26%  Similarity=0.508  Sum_probs=17.8

Q ss_pred             CCEEEEECCCCCHHHHH--HHHCCCCEEEEECCCCCC
Q ss_conf             98799975898823467--750235259984255430
Q gi|254780398|r   48 GITVIEIGAGPGNLTQM--LLTLGARKVIVIEKDQQF   82 (284)
Q Consensus        48 ~~~VlEIGpG~G~LT~~--Ll~~~~~~v~aiEiD~~~   82 (284)
                      +-.|+=||+|.+.||-+  |.+.+.+.|+.+|...+.
T Consensus         4 ~~~VvIIGaGiaGL~aA~~L~~~G~~~V~vlEa~~rv   40 (472)
T 1b37_A            4 GPRVIVVGAGMSGISAAKRLSEAGITDLLILEATDHI   40 (472)
T ss_dssp             -CCEEEECCBHHHHHHHHHHHHTTCCCEEEECSSSSS
T ss_pred             CCCEEEECCCHHHHHHHHHHHHCCCCCEEEEECCCCC
T ss_conf             9988998978899999999996799988999279987


No 339
>2qc3_A MCT, malonyl COA-acyl carrier protein transacylase; malonyl-COA:ACP transacylase, , nucleophilic attack; 2.30A {Mycobacterium tuberculosis H37RV} PDB: 2qj3_A
Probab=40.81  E-value=15  Score=16.28  Aligned_cols=24  Identities=25%  Similarity=0.365  Sum_probs=14.6

Q ss_pred             CCCCCCCEEEEECCCCCHHHHHHH
Q ss_conf             198999879997589882346775
Q gi|254780398|r   43 SGSLDGITVIEIGAGPGNLTQMLL   66 (284)
Q Consensus        43 ~~~~~~~~VlEIGpG~G~LT~~Ll   66 (284)
                      .++...+...=+|-..|-++-..+
T Consensus        78 ~g~~~~~P~~v~GhSlGE~aAl~~  101 (303)
T 2qc3_A           78 RCVLAGKDVIVAGHSVGEIAAYAI  101 (303)
T ss_dssp             TTTTTTCCEEEEECTTHHHHHHHH
T ss_pred             HHHCCCCCCEEEECCHHHHHHHHH
T ss_conf             630033472798767628999997


No 340
>2e58_A MNMC2; tRNA wobble uridine, modification enzyme, genetic CODE, 5- methylaminomethyl-2-thiouridine, methyltransferase, 2-codon SETS; HET: SAM; 2.50A {Aquifex aeolicus VF5}
Probab=40.75  E-value=17  Score=15.80  Aligned_cols=60  Identities=20%  Similarity=0.325  Sum_probs=30.6

Q ss_pred             CCCCCCCCC--CHHHH---HHHHHHCC------CCCCCEEEEECCCCCH---HHHH-HHHCCCC-EEEEECCCCCC
Q ss_conf             365841123--98999---99999719------8999879997589882---3467-7502352-59984255430
Q gi|254780398|r   23 KYMGQNFLL--DLNIL---KKIAESSG------SLDGITVIEIGAGPGN---LTQM-LLTLGAR-KVIVIEKDQQF   82 (284)
Q Consensus        23 k~lGQnFL~--d~~i~---~~iv~~~~------~~~~~~VlEIGpG~G~---LT~~-Ll~~~~~-~v~aiEiD~~~   82 (284)
                      ..+|++|=-  +-.+.   +..++...      -.+.-+|+|||-|+|-   +|-. +.+.++. ++..+++|...
T Consensus        61 ~~f~E~YHS~~~GAl~ES~~vFI~~~~l~~r~~~~~~i~ILEiGFGtGlN~l~tl~~~~~~~~~~~l~~isiE~~~  136 (308)
T 2e58_A           61 KTYGEPYHSQTAGAIRESLYKFVRPSRILEKAKERKVIRILDVGFGLGYNLAVALKHLWEVNPKLRVEIISFEKEL  136 (308)
T ss_dssp             TTTTEESSCTTTCHHHHHHHHTHHHHTHHHHTTTCSEEEEEEECCTTSHHHHHHHHHHHHHCTTCEEEEEEEESSC
T ss_pred             CCCCCCCCCCCCCHHHHHHHHHHCCCCHHHHHCCCCCEEEEEECCCCCHHHHHHHHHHHHHCCCCCEEEEEHHHHH
T ss_conf             7658866799876899999987035772677536997199995665128999999999973987624886403879


No 341
>3grp_A 3-oxoacyl-(acyl carrierprotein) reductase; structural genomics, oxidoreductase; 2.09A {Bartonella henselae str} PDB: 3enn_A 3emk_A
Probab=40.52  E-value=17  Score=15.78  Aligned_cols=82  Identities=11%  Similarity=0.084  Sum_probs=50.0

Q ss_pred             CCCCEEEEECCCCC---HHHHHHHHCCCCEEEEECCCCCCHHHHHHHHHHHHCCCCCCHHHHCCCCH-HHHC----CC-C
Q ss_conf             99987999758988---23467750235259984255430368878753220012200000001431-5521----33-2
Q gi|254780398|r   46 LDGITVIEIGAGPG---NLTQMLLTLGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDF-EKFF----NI-S  116 (284)
Q Consensus        46 ~~~~~VlEIGpG~G---~LT~~Ll~~~~~~v~aiEiD~~~~~~l~~~~~~~~~~~~ii~~Dal~~d~-~~~~----~~-~  116 (284)
                      .+++.+|=.|.+.|   ++.+.+++.++ +|+.+.++..-++.+.   .+...++..+.+|+.+.+- ..+.    .. +
T Consensus        25 L~gK~alVTGas~GIG~aia~~la~~Ga-~V~i~~r~~~~l~~~~---~~~g~~~~~~~~Dv~~~~~v~~~~~~~~~~~g  100 (266)
T 3grp_A           25 LTGRKALVTGATGGIGEAIARCFHAQGA-IVGLHGTREDKLKEIA---ADLGKDVFVFSANLSDRKSIKQLAEVAEREME  100 (266)
T ss_dssp             CTTCEEEESSTTSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHH---HHHCSSEEEEECCTTSHHHHHHHHHHHHHHHT
T ss_pred             CCCCEEEEECCCCHHHHHHHHHHHHCCC-EEEEEECCHHHHHHHH---HHHCCCEEEEEECCCCHHHHHHHHHHHHHHCC
T ss_conf             8999899938786899999999998799-9999979999999999---98399779999017999999999999999809


Q ss_pred             CCEEEEECCCHHHHH
Q ss_conf             220112023224678
Q gi|254780398|r  117 SPIRIIANLPYNIGT  131 (284)
Q Consensus       117 ~~~~vvgNLPYnIss  131 (284)
                      ..-.+|-|--+....
T Consensus       101 ~iDiLVnnAg~~~~~  115 (266)
T 3grp_A          101 GIDILVNNAGITRDG  115 (266)
T ss_dssp             SCCEEEECCCCC---
T ss_pred             CCCEEEECCCCCCCC
T ss_conf             983999899679998


No 342
>2e1m_A L-glutamate oxidase; L-amino acid oxidase, FAD, L-GOX, flavoprotein, 3D-structure, oxidoreductase; HET: FAD; 2.80A {Streptomyces SP}
Probab=40.51  E-value=17  Score=15.78  Aligned_cols=34  Identities=24%  Similarity=0.406  Sum_probs=26.3

Q ss_pred             CCCCCEEEEECCCCCHHHH--HHHHCCCCEEEEECCC
Q ss_conf             8999879997589882346--7750235259984255
Q gi|254780398|r   45 SLDGITVIEIGAGPGNLTQ--MLLTLGARKVIVIEKD   79 (284)
Q Consensus        45 ~~~~~~VlEIGpG~G~LT~--~Ll~~~~~~v~aiEiD   79 (284)
                      ..+...|+=||+|.+.||-  .|.+.+ .+|+.+|..
T Consensus        41 ~~~~k~VaIIGAGisGL~aA~~L~~~G-~~VtVlEa~   76 (376)
T 2e1m_A           41 PGPPKRILIVGAGIAGLVAGDLLTRAG-HDVTILEAN   76 (376)
T ss_dssp             CCSCCEEEEECCBHHHHHHHHHHHHTS-CEEEEECSC
T ss_pred             CCCCCEEEEECCCHHHHHHHHHHHHCC-CCEEEEECC
T ss_conf             999997999898889999999998689-938999657


No 343
>1xhc_A NADH oxidase /nitrite reductase; southeast collaboratory for structural genomics, secsg, hyperthermophIle; HET: FAD; 2.35A {Pyrococcus furiosus dsm 3638} SCOP: c.3.1.5 c.3.1.5 d.87.1.1
Probab=40.12  E-value=18  Score=15.74  Aligned_cols=36  Identities=28%  Similarity=0.431  Sum_probs=26.0

Q ss_pred             CCCCEEEEECCCCCHHHHHHHHCCCCEEEEECCCCC
Q ss_conf             999879997589882346775023525998425543
Q gi|254780398|r   46 LDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQ   81 (284)
Q Consensus        46 ~~~~~VlEIGpG~G~LT~~Ll~~~~~~v~aiEiD~~   81 (284)
                      ..|..|+=||.|++.++-+..-+...+|+.||.++.
T Consensus         6 ~~GkkVvIIG~G~AGl~aA~~l~~~~~Vtlie~~~~   41 (367)
T 1xhc_A            6 HHGSKVVIVGNGPGGFELAKQLSQTYEVTVIDKEPV   41 (367)
T ss_dssp             ---CEEEEECCSHHHHHHHHHHTTTSEEEEECSSSS
T ss_pred             CCCCEEEEECCCHHHHHHHHHHHCCCCEEEEECCCC
T ss_conf             999969999998999999999707998999969886


No 344
>2zat_A Dehydrogenase/reductase SDR family member 4; alpha/beta, oxidoreductase; HET: NAP; 1.50A {Sus scrofa} PDB: 3o4r_A*
Probab=40.02  E-value=18  Score=15.73  Aligned_cols=64  Identities=14%  Similarity=0.080  Sum_probs=44.3

Q ss_pred             CCCCCCEEEEECCCCC---HHHHHHHHCCCCEEEEECCCCCCHHHHHHHHHHHHCCCCCCHHHHCCCC
Q ss_conf             9899987999758988---2346775023525998425543036887875322001220000000143
Q gi|254780398|r   44 GSLDGITVIEIGAGPG---NLTQMLLTLGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVD  108 (284)
Q Consensus        44 ~~~~~~~VlEIGpG~G---~LT~~Ll~~~~~~v~aiEiD~~~~~~l~~~~~~~~~~~~ii~~Dal~~d  108 (284)
                      ...+++.+|=.|.+.|   ++.+.|++.++ +|+...++..-++.+.+.+.....++..+.+|..+.+
T Consensus        10 ~~L~gKvalVTGas~GIG~aia~~la~~Ga-~V~i~~r~~~~l~~~~~~l~~~g~~~~~~~~Dv~~~~   76 (260)
T 2zat_A           10 KPLENKVALVTASTDGIGLAIARRLAQDGA-HVVVSSRKQENVDRTVATLQGEGLSVTGTVCHVGKAE   76 (260)
T ss_dssp             CTTTTCEEEESSCSSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHHHHHTTCCEEEEECCTTCHH
T ss_pred             CCCCCCEEEEECCCCHHHHHHHHHHHHCCC-EEEEEECCHHHHHHHHHHHHHCCCCEEEEECCCCCHH
T ss_conf             888999799927787899999999998799-9999979889999999998834983689976579999


No 345
>2cqg_A TDP-43, TAR DNA-binding protein-43; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=40.01  E-value=9.1  Score=17.53  Aligned_cols=22  Identities=23%  Similarity=0.324  Sum_probs=18.2

Q ss_pred             EEEECCCHHHHHHHHHHHHHHH
Q ss_conf             1120232246788999998520
Q gi|254780398|r  120 RIIANLPYNIGTRLLFNWISAD  141 (284)
Q Consensus       120 ~vvgNLPYnIss~Il~~ll~~~  141 (284)
                      ..|+||||+++-.-|..++...
T Consensus        18 lfV~nLp~~~te~~L~~~F~~~   39 (103)
T 2cqg_A           18 LIVLGLPWKTTEQDLKEYFSTF   39 (103)
T ss_dssp             EEEESCCSSCCHHHHHHHHGGG
T ss_pred             EEEECCCCCCCHHHHHHHHHHC
T ss_conf             9997999989999999999724


No 346
>2cqd_A RNA-binding region containing protein 1; RNA recognition motif, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=39.99  E-value=7.4  Score=18.11  Aligned_cols=21  Identities=19%  Similarity=0.417  Sum_probs=17.7

Q ss_pred             EEEECCCHHHHHHHHHHHHHH
Q ss_conf             112023224678899999852
Q gi|254780398|r  120 RIIANLPYNIGTRLLFNWISA  140 (284)
Q Consensus       120 ~vvgNLPYnIss~Il~~ll~~  140 (284)
                      ..||||||.++..=|..++..
T Consensus        20 lfV~nLp~~~te~~l~~~F~~   40 (116)
T 2cqd_A           20 IFVGGLPYHTTDASLRKYFEG   40 (116)
T ss_dssp             EEEECCCSSCCHHHHHHHHHT
T ss_pred             EEEECCCCCCCHHHHHHHHHH
T ss_conf             999797998989999999998


No 347
>3md3_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RNP, RBD, poly(U) binding, tandem, acetylation, cytopla nucleus; 2.70A {Saccharomyces cerevisiae}
Probab=39.90  E-value=11  Score=17.03  Aligned_cols=20  Identities=20%  Similarity=0.248  Sum_probs=14.4

Q ss_pred             EEEECCCHHHHHHHHHHHHH
Q ss_conf             11202322467889999985
Q gi|254780398|r  120 RIIANLPYNIGTRLLFNWIS  139 (284)
Q Consensus       120 ~vvgNLPYnIss~Il~~ll~  139 (284)
                      .+|+|||++++..-+..+..
T Consensus        90 l~v~nLp~~~~~~~l~~~f~  109 (166)
T 3md3_A           90 LFVGDLNVNVDDETLRNAFK  109 (166)
T ss_dssp             EEEESCCTTCCHHHHHHHHT
T ss_pred             CCCCCCCCCCCHHHHHHHHH
T ss_conf             12443223452778877641


No 348
>2g4b_A Splicing factor U2AF 65 kDa subunit; protein-RNA complex, RNA splicing factor, RNA recognition motif, RNA binding protein/RNA complex; 2.50A {Homo sapiens} PDB: 2u2f_A
Probab=39.84  E-value=7.4  Score=18.11  Aligned_cols=67  Identities=13%  Similarity=0.116  Sum_probs=35.5

Q ss_pred             CCHHHHCCCCHHHHCC--CCCCEEEEECCCHHHHHHHHHHHHHHHCCCCCC-------------CHHHHEEEHHHHHHHH
Q ss_conf             0000000143155213--322201120232246788999998520100000-------------0110203344788753
Q gi|254780398|r   99 IIQDDALKVDFEKFFN--ISSPIRIIANLPYNIGTRLLFNWISADTWPPFW-------------ESLTLLFQKEVGERIT  163 (284)
Q Consensus        99 ii~~Dal~~d~~~~~~--~~~~~~vvgNLPYnIss~Il~~ll~~~~~~~~~-------------~~~vlmvQkEvA~Rl~  163 (284)
                      +++|-.+++.+.....  .......|+|||++++..-|..++........+             ...+-+-.+|.|++..
T Consensus        74 ~~~g~~l~v~~~~~~~~~~~~~~l~V~nL~~~~~e~~l~~~F~~~G~V~~v~i~~d~~~~~~kg~~fV~f~~~~~a~~Al  153 (172)
T 2g4b_A           74 IFQGQSLKIRRPHDYQPLPGAHKLFIGGLPNYLNDDQVKELLTSFGPLKAFNLVKDSATGLSKGYAFCEYVDINVTDQAI  153 (172)
T ss_dssp             EETTEECEEECCSSCCCCTTTTCEEEECCCTTCCHHHHHHHHHTTSCEEEEEEEECTTTCSEEEEEEEEESSTTHHHHHH
T ss_pred             CCCCCCEEEEEECCCCCCCCCCEEEECCCCCCCCHHHHHHHHHHCCCCCEEEEEEECCCCCCCCEEEEEECCHHHHHHHH
T ss_conf             12586117743012356777510140466678869999878865487743467775378871455999988999999999


Q ss_pred             HC
Q ss_conf             01
Q gi|254780398|r  164 AQ  165 (284)
Q Consensus       164 a~  165 (284)
                      ..
T Consensus       154 ~~  155 (172)
T 2g4b_A          154 AG  155 (172)
T ss_dssp             HH
T ss_pred             HH
T ss_conf             98


No 349
>2ek1_A RNA-binding protein 12; RNA recognition motif, dimer, structural genomics, NPPSFA, national project on protein structural and functional analyses; 2.00A {Homo sapiens} PDB: 2ek6_A
Probab=39.80  E-value=12  Score=16.75  Aligned_cols=23  Identities=9%  Similarity=0.414  Sum_probs=18.4

Q ss_pred             EEEEECCCHHHHHHHHHHHHHHH
Q ss_conf             01120232246788999998520
Q gi|254780398|r  119 IRIIANLPYNIGTRLLFNWISAD  141 (284)
Q Consensus       119 ~~vvgNLPYnIss~Il~~ll~~~  141 (284)
                      ...|+||||+++..=|..++...
T Consensus        17 ~l~v~nLp~~~t~~dl~~~F~~~   39 (95)
T 2ek1_A           17 VIKVQNMPFTVSIDEILDFFYGY   39 (95)
T ss_dssp             EEEEECCCTTCCHHHHHHHTTTS
T ss_pred             EEEEECCCCCCCHHHHHHHHHCC
T ss_conf             99997989989799999998525


No 350
>2o23_A HADH2 protein; HSD17B10, schad, ERAB, type II HADH, 2-methyl-3- hydroxybutyryl-COA dehydrogenase, MHBD; HET: NAD GOL; 1.20A {Homo sapiens} SCOP: c.2.1.2 PDB: 1so8_A 1u7t_A* 1e3s_A* 1e3w_B* 1e3w_A* 1e6w_A*
Probab=39.59  E-value=18  Score=15.69  Aligned_cols=66  Identities=15%  Similarity=0.189  Sum_probs=46.2

Q ss_pred             HHHHCCCCCCCEEEEECCCCC---HHHHHHHHCCCCEEEEECCCCCCHHHHHHHHHHHHCCCCCCHHHHCCCC
Q ss_conf             999719899987999758988---2346775023525998425543036887875322001220000000143
Q gi|254780398|r   39 IAESSGSLDGITVIEIGAGPG---NLTQMLLTLGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVD  108 (284)
Q Consensus        39 iv~~~~~~~~~~VlEIGpG~G---~LT~~Ll~~~~~~v~aiEiD~~~~~~l~~~~~~~~~~~~ii~~Dal~~d  108 (284)
                      |.......+++.+|=.|.+.|   ++.+.|++.++ +|+.+.++..-.+.+.+.   ..++...+.+|..+.+
T Consensus         3 m~~~~~~LkGKvalVTGas~GIG~aia~~la~~Ga-~Vv~~~r~~~~~~~~~~~---~~~~~~~~~~Dv~~~~   71 (265)
T 2o23_A            3 MAAACRSVKGLVAVITGGASGLGLATAERLVGQGA-SAVLLDLPNSGGEAQAKK---LGNNCVFAPADVTSEK   71 (265)
T ss_dssp             -----CCCTTCEEEEETTTSHHHHHHHHHHHHTTC-EEEEEECTTSSHHHHHHH---HCTTEEEEECCTTCHH
T ss_pred             CCCCCCCCCCCEEEEECCCCHHHHHHHHHHHHCCC-EEEEEECCHHHHHHHHHH---HCCCEEEEEEECCCHH
T ss_conf             88678899999899928688899999999998799-899996886889999998---2896799981069999


No 351
>1hd0_A Protein (heterogeneous nuclear ribonucleoprotein D0); RNA-binding domain, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 1hd1_A
Probab=39.49  E-value=11  Score=17.08  Aligned_cols=20  Identities=20%  Similarity=0.393  Sum_probs=16.9

Q ss_pred             EEECCCHHHHHHHHHHHHHH
Q ss_conf             12023224678899999852
Q gi|254780398|r  121 IIANLPYNIGTRLLFNWISA  140 (284)
Q Consensus       121 vvgNLPYnIss~Il~~ll~~  140 (284)
                      .|||||+++|..-|..+...
T Consensus         3 fV~nLp~~~te~~l~~~F~~   22 (75)
T 1hd0_A            3 FIGGLSWDTTKKDLKDYFSK   22 (75)
T ss_dssp             EEECCCTTCCHHHHHHHHHT
T ss_pred             EEECCCCCCCHHHHHHHHHH
T ss_conf             99089996989999999985


No 352
>1h2v_Z 20 kDa nuclear CAP binding protein; CAP-binding-complex, RNP domain, MIF4G domain, RNA maturation, RNA export, nuclear protein, RNA-binding; 2.0A {Homo sapiens} SCOP: d.58.7.1 PDB: 1h2u_X* 1h2t_Z 1n52_B* 1n54_B 3fex_B 3fey_B 1h6k_X
Probab=39.40  E-value=14  Score=16.38  Aligned_cols=24  Identities=13%  Similarity=0.242  Sum_probs=19.3

Q ss_pred             CEEEEECCCHHHHHHHHHHHHHHH
Q ss_conf             201120232246788999998520
Q gi|254780398|r  118 PIRIIANLPYNIGTRLLFNWISAD  141 (284)
Q Consensus       118 ~~~vvgNLPYnIss~Il~~ll~~~  141 (284)
                      ...+|||||+.++..-|..++...
T Consensus        40 ~tlfVgnLp~~~te~~L~~~F~~~   63 (156)
T 1h2v_Z           40 CTLYVGNLSFYTTEEQIYELFSKS   63 (156)
T ss_dssp             CEEEEESCCTTCCHHHHHHHHGGG
T ss_pred             CEEEEECCCCCCCHHHHHHHHHHH
T ss_conf             889981999979899999999965


No 353
>2jwn_A Embryonic polyadenylate-binding protein 2-B; epabp2, poly(A) binding, structural genomics, protein structure initiative, PSI-2; NMR {Xenopus laevis}
Probab=39.22  E-value=10  Score=17.20  Aligned_cols=23  Identities=17%  Similarity=0.111  Sum_probs=18.9

Q ss_pred             EEEEECCCHHHHHHHHHHHHHHH
Q ss_conf             01120232246788999998520
Q gi|254780398|r  119 IRIIANLPYNIGTRLLFNWISAD  141 (284)
Q Consensus       119 ~~vvgNLPYnIss~Il~~ll~~~  141 (284)
                      ...||||||+++..-|..++...
T Consensus        38 tv~V~nLp~~~t~~~l~~~F~~~   60 (124)
T 2jwn_A           38 SVYVGNVDYGSTAQDLEAHFSSC   60 (124)
T ss_dssp             EEEEEEECTTCCHHHHHHHHHTT
T ss_pred             EEEEECCCCCCCHHHHHHHHHHH
T ss_conf             89997969989899999999964


No 354
>2h1y_A Malonyl coenzyme A-acyl carrier protein transacylase; FABD, MCAT, transferase; 2.50A {Helicobacter pylori SS1}
Probab=38.91  E-value=19  Score=15.62  Aligned_cols=13  Identities=23%  Similarity=0.534  Sum_probs=8.9

Q ss_pred             ECCCCCHHHHHHH
Q ss_conf             7589882346775
Q gi|254780398|r   54 IGAGPGNLTQMLL   66 (284)
Q Consensus        54 IGpG~G~LT~~Ll   66 (284)
                      +|-..|-++-..+
T Consensus       101 ~GhSlGE~aA~~~  113 (321)
T 2h1y_A          101 LGHSLGEVSAVSL  113 (321)
T ss_dssp             EECTHHHHHHHHH
T ss_pred             EECCCCHHHHHHH
T ss_conf             3258206899986


No 355
>1x5s_A Cold-inducible RNA-binding protein; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=38.86  E-value=11  Score=16.98  Aligned_cols=21  Identities=14%  Similarity=0.233  Sum_probs=17.5

Q ss_pred             EEEECCCHHHHHHHHHHHHHH
Q ss_conf             112023224678899999852
Q gi|254780398|r  120 RIIANLPYNIGTRLLFNWISA  140 (284)
Q Consensus       120 ~vvgNLPYnIss~Il~~ll~~  140 (284)
                      ..||||||+++..-|..++..
T Consensus        15 lfV~nLp~~~te~~l~~~F~~   35 (102)
T 1x5s_A           15 LFVGGLSFDTNEQSLEQVFSK   35 (102)
T ss_dssp             EEEESCCTTCCHHHHHHHHHH
T ss_pred             EEEECCCCCCCHHHHHHHHHH
T ss_conf             999799986879999998744


No 356
>1b7f_A Protein (SXL-lethal protein), RNA (5'-R(P*GP*UP*UP*GP*UP*UP*UP*UP*UP*UP*UP*U)- 3'); splicing regulation, RNP domain, RNA complex; 2.60A {Drosophila melanogaster} SCOP: d.58.7.1 d.58.7.1 PDB: 3sxl_A* 1sxl_A 2sxl_A
Probab=38.77  E-value=11  Score=17.02  Aligned_cols=21  Identities=24%  Similarity=0.241  Sum_probs=14.9

Q ss_pred             EEEECCCHHHHHHHHHHHHHH
Q ss_conf             112023224678899999852
Q gi|254780398|r  120 RIIANLPYNIGTRLLFNWISA  140 (284)
Q Consensus       120 ~vvgNLPYnIss~Il~~ll~~  140 (284)
                      ..|+|||++++...|..++..
T Consensus        92 v~i~nl~~~~~e~~l~~~f~~  112 (168)
T 1b7f_A           92 LYVTNLPRTITDDQLDTIFGK  112 (168)
T ss_dssp             EEEESCCTTCCHHHHHHHHTS
T ss_pred             EEEECCCCCCCHHHHHHHHHH
T ss_conf             999389986799999999976


No 357
>2qae_A Lipoamide, dihydrolipoyl dehydrogenase; FAD-cystine-oxidoreductase, homodimer; HET: FAD; 1.90A {Trypanosoma cruzi}
Probab=38.70  E-value=19  Score=15.60  Aligned_cols=35  Identities=29%  Similarity=0.341  Sum_probs=22.7

Q ss_pred             CCEEEEECCCCCHHH--HHHHHCCCCEEEEECCCCCCH
Q ss_conf             987999758988234--677502352599842554303
Q gi|254780398|r   48 GITVIEIGAGPGNLT--QMLLTLGARKVIVIEKDQQFF   83 (284)
Q Consensus        48 ~~~VlEIGpG~G~LT--~~Ll~~~~~~v~aiEiD~~~~   83 (284)
                      .+.|+=||.|.-++-  ..+.+.+ .+|+.||..+++.
T Consensus       174 pk~v~ViGgG~ig~E~A~~l~~~G-~~Vtlver~~~lL  210 (468)
T 2qae_A          174 PKTMVVIGGGVIGLELGSVWARLG-AEVTVVEFAPRCA  210 (468)
T ss_dssp             CSEEEEECCSHHHHHHHHHHHHTT-CEEEEECSSSSSS
T ss_pred             CCEEEEECCCHHHHHHHHHHHHCC-CEEEEEEECCCCC
T ss_conf             997999998899999999999659-9499997277135


No 358
>2db1_A Heterogeneous nuclear ribonucleoprotein F; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus}
Probab=38.59  E-value=11  Score=16.98  Aligned_cols=22  Identities=18%  Similarity=0.374  Sum_probs=17.6

Q ss_pred             EEEEECCCHHHHHHHHHHHHHH
Q ss_conf             0112023224678899999852
Q gi|254780398|r  119 IRIIANLPYNIGTRLLFNWISA  140 (284)
Q Consensus       119 ~~vvgNLPYnIss~Il~~ll~~  140 (284)
                      ...|+||||++|-.=|..++..
T Consensus        19 ~v~v~nLP~~~te~dI~~~F~~   40 (118)
T 2db1_A           19 VVKLRGLPWSCSIEDVQNFLSD   40 (118)
T ss_dssp             EEEEESCCTTCCHHHHHHHTTT
T ss_pred             EEEEECCCCCCCHHHHHHHHHH
T ss_conf             9999298985979999999874


No 359
>2bcg_G Secretory pathway GDP dissociation inhibitor; RABGTPase, geranylgeranylation, vesicular transport, protein transport; HET: GDP GER; 1.48A {Saccharomyces cerevisiae} SCOP: c.3.1.3 c.3.1.3 d.16.1.6 PDB: 1ukv_G* 3cpi_G 3cph_G 3cpj_G*
Probab=38.52  E-value=16  Score=16.00  Aligned_cols=33  Identities=30%  Similarity=0.467  Sum_probs=24.0

Q ss_pred             CEEEEECCCCCHHHHH--HHHCCCCEEEEECCCCCC
Q ss_conf             8799975898823467--750235259984255430
Q gi|254780398|r   49 ITVIEIGAGPGNLTQM--LLTLGARKVIVIEKDQQF   82 (284)
Q Consensus        49 ~~VlEIGpG~G~LT~~--Ll~~~~~~v~aiEiD~~~   82 (284)
                      -.|+=||.|.+.|+-+  |+++| ++|+.+|.....
T Consensus        12 yDviIIGaGl~Gl~~A~~La~~G-~kVlvlE~~~~~   46 (453)
T 2bcg_G           12 YDVIVLGTGITECILSGLLSVDG-KKVLHIDKQDHY   46 (453)
T ss_dssp             CSEEEECCSHHHHHHHHHHHHTT-CCEEEECSSSSS
T ss_pred             CCEEEECCCHHHHHHHHHHHHCC-CCEEEECCCCCC
T ss_conf             78899895889999999999889-989998999998


No 360
>1ja9_A 4HNR, 1,3,6,8-tetrahydroxynaphthalene reductase; protein-NADPH-active site inhibitor complex, oxidoreductase, short chain dehydrogenase; HET: NDP PYQ; 1.50A {Magnaporthe grisea} SCOP: c.2.1.2
Probab=38.51  E-value=19  Score=15.59  Aligned_cols=64  Identities=23%  Similarity=0.179  Sum_probs=44.3

Q ss_pred             CCCCCCEEEEECCCCCH---HHHHHHHCCCCEEEE-ECCCCCCHHHHHHHHHHHHCCCCCCHHHHCCCC
Q ss_conf             98999879997589882---346775023525998-425543036887875322001220000000143
Q gi|254780398|r   44 GSLDGITVIEIGAGPGN---LTQMLLTLGARKVIV-IEKDQQFFPILKDISSQHPNRLEIIQDDALKVD  108 (284)
Q Consensus        44 ~~~~~~~VlEIGpG~G~---LT~~Ll~~~~~~v~a-iEiD~~~~~~l~~~~~~~~~~~~ii~~Dal~~d  108 (284)
                      .+..|+.+|=-|.+.|.   +.+.|++.+++ |+. .-.+.+..+.+.+.......++..+.+|+.+.+
T Consensus        17 ~pL~GKvalVTGas~GIG~aiA~~la~~Ga~-Vvi~~~~~~~~~~~~~~~l~~~g~~~~~~~~Dvs~~~   84 (274)
T 1ja9_A           17 KPLAGKVALTTGAGRGIGRGIAIELGRRGAS-VVVNYGSSSKAAEEVVAELKKLGAQGVAIQADISKPS   84 (274)
T ss_dssp             CTTTTCEEEETTTTSHHHHHHHHHHHHTTCE-EEEEESSCHHHHHHHHHHHHHTTCCEEEEECCTTSHH
T ss_pred             CCCCCCEEEEECCCCHHHHHHHHHHHHCCCE-EEEECCCCHHHHHHHHHHHHHCCCCEEEEECCCCCHH
T ss_conf             8999998999688868999999999987998-9997289878999999999973995899982489999


No 361
>2fy1_A RNA-binding motif protein, Y chromosome, family 1 member A1; RNA binding protein, structure, protein-RNA complex, RNA stem-loop, structural protein/RNA complex; NMR {Homo sapiens}
Probab=38.14  E-value=11  Score=16.94  Aligned_cols=21  Identities=14%  Similarity=0.159  Sum_probs=18.0

Q ss_pred             EEEECCCHHHHHHHHHHHHHH
Q ss_conf             112023224678899999852
Q gi|254780398|r  120 RIIANLPYNIGTRLLFNWISA  140 (284)
Q Consensus       120 ~vvgNLPYnIss~Il~~ll~~  140 (284)
                      ..|||||+++|.+-|..++..
T Consensus        10 lfV~nLp~~~te~~L~~~F~~   30 (116)
T 2fy1_A           10 LFIGGLNRETNEKMLKAVFGK   30 (116)
T ss_dssp             EEEECCTTTCCHHHHHHHHHT
T ss_pred             EEEECCCCCCCHHHHHHHHHH
T ss_conf             999798998999999999987


No 362
>1nff_A Putative oxidoreductase RV2002; directed evolution, GFP, SDR, hydroxysteroid dehydrogenase, structural genomics, PSI; HET: NAD; 1.80A {Mycobacterium tuberculosis} SCOP: c.2.1.2 PDB: 1nfq_A* 1nfr_A*
Probab=38.00  E-value=19  Score=15.54  Aligned_cols=61  Identities=16%  Similarity=0.193  Sum_probs=42.3

Q ss_pred             CCCCCCEEEEECCCCCH---HHHHHHHCCCCEEEEECCCCCCHHHHHHHHHHHHCCCCCCHHHHCCCC
Q ss_conf             98999879997589882---346775023525998425543036887875322001220000000143
Q gi|254780398|r   44 GSLDGITVIEIGAGPGN---LTQMLLTLGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVD  108 (284)
Q Consensus        44 ~~~~~~~VlEIGpG~G~---LT~~Ll~~~~~~v~aiEiD~~~~~~l~~~~~~~~~~~~ii~~Dal~~d  108 (284)
                      +..+++.+|=.|.+.|.   +.+.|++.++ +|+...+++.-.+.+.+   +..++...+.+|+.+.+
T Consensus         3 g~L~gK~alITGas~GIG~aia~~la~~Ga-~V~~~~r~~~~l~~~~~---el~~~~~~~~~Dv~~~~   66 (260)
T 1nff_A            3 GRLTGKVALVSGGARGMGASHVRAMVAEGA-KVVFGDILDEEGKAMAA---ELADAARYVHLDVTQPA   66 (260)
T ss_dssp             CTTTTCEEEEETTTSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHH---HTGGGEEEEECCTTCHH
T ss_pred             CCCCCCEEEEECCCCHHHHHHHHHHHHCCC-EEEEEECCHHHHHHHHH---HHCCCCEEEEEECCCHH
T ss_conf             765989899948887899999999998799-99999798899999999---85187179998479999


No 363
>2ivd_A PPO, PPOX, protoporphyrinogen oxidase; porphyrin biosynthesis, chlorophyll biosynthesis, oxidoreductase, HAEM biosynthesis, heme biosynthesis; HET: ACJ FAD TWN; 2.3A {Myxococcus xanthus} SCOP: c.3.1.2 d.16.1.5 PDB: 2ive_A*
Probab=37.53  E-value=17  Score=15.87  Aligned_cols=34  Identities=24%  Similarity=0.509  Sum_probs=21.8

Q ss_pred             CCEEEEECCCCCHHHHH--HHHCCCCEEEEECCCCCC
Q ss_conf             98799975898823467--750235259984255430
Q gi|254780398|r   48 GITVIEIGAGPGNLTQM--LLTLGARKVIVIEKDQQF   82 (284)
Q Consensus        48 ~~~VlEIGpG~G~LT~~--Ll~~~~~~v~aiEiD~~~   82 (284)
                      +..|+=||+|.+.||-+  |.+.+. +|+.+|...+.
T Consensus        16 ~~~V~IIGaGiaGL~aA~~L~~~G~-~V~vlE~~~~~   51 (478)
T 2ivd_A           16 GMNVAVVGGGISGLAVAHHLRSRGT-DAVLLESSARL   51 (478)
T ss_dssp             -CCEEEECCBHHHHHHHHHHHTTTC-CEEEECSSSSS
T ss_pred             CCCEEEECCCHHHHHHHHHHHHCCC-CEEEECCCCCC
T ss_conf             9998998987899999999985899-88999079988


No 364
>3ek2_A Enoyl-(acyl-carrier-protein) reductase (NADH); ssgcid, oxidoreductase, structural genomics; 1.90A {Burkholderia pseudomallei 1710B}
Probab=37.53  E-value=19  Score=15.49  Aligned_cols=64  Identities=14%  Similarity=0.189  Sum_probs=44.6

Q ss_pred             CCCCCCCEEEEEC--C--CCC-HHHHHHHHCCCCEEEEECCCCCCHHHHHHHHHHHHCCCCCCHHHHCCCC
Q ss_conf             1989998799975--8--988-2346775023525998425543036887875322001220000000143
Q gi|254780398|r   43 SGSLDGITVIEIG--A--GPG-NLTQMLLTLGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVD  108 (284)
Q Consensus        43 ~~~~~~~~VlEIG--p--G~G-~LT~~Ll~~~~~~v~aiEiD~~~~~~l~~~~~~~~~~~~ii~~Dal~~d  108 (284)
                      .+..+++.+|=-|  .  |.| ++.+.+++.++ +|+...++.+..+.+.+...... +...+.+|+.+.+
T Consensus         9 M~~L~gK~alITGaa~s~GIG~aiA~~la~~Ga-~V~~~~~~~~~~~~~~~~~~~~~-~~~~~~~Dv~d~~   77 (271)
T 3ek2_A            9 MGFLDGKRILLTGLLSNRSIAYGIAKACKREGA-ELAFTYVGDRFKDRITEFAAEFG-SELVFPCDVADDA   77 (271)
T ss_dssp             CCTTTTCEEEECCCCSTTSHHHHHHHHHHHTTC-EEEEEESSGGGHHHHHHHHHHTT-CCCEEECCTTCHH
T ss_pred             CCCCCCCEEEEECCCCCCHHHHHHHHHHHHCCC-EEEEEECCHHHHHHHHHHHHHCC-CEEEEEEECCCHH
T ss_conf             567479989998998760899999999998699-99999588788999999997449-7389997338879


No 365
>2e5i_A Heterogeneous nuclear ribonucleoprotein L-like; RRM domain, RBD, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=37.43  E-value=11  Score=17.11  Aligned_cols=20  Identities=25%  Similarity=0.328  Sum_probs=17.1

Q ss_pred             EEECCCHHHHHHHHHHHHHH
Q ss_conf             12023224678899999852
Q gi|254780398|r  121 IIANLPYNIGTRLLFNWISA  140 (284)
Q Consensus       121 vvgNLPYnIss~Il~~ll~~  140 (284)
                      +|.||||.||...|..+...
T Consensus        29 ~v~Nl~~~vt~~~L~~lF~~   48 (124)
T 2e5i_A           29 SIQNPLYPITVDVLYTVCNP   48 (124)
T ss_dssp             EEESCCSCCCHHHHHHHHTT
T ss_pred             EECCCCCCCCHHHHHHHHHH
T ss_conf             97498997899999999987


No 366
>1wg5_A Heterogeneous nuclear ribonucleoprotein H; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=37.33  E-value=13  Score=16.63  Aligned_cols=23  Identities=13%  Similarity=0.329  Sum_probs=18.2

Q ss_pred             CEEEEECCCHHHHHHHHHHHHHH
Q ss_conf             20112023224678899999852
Q gi|254780398|r  118 PIRIIANLPYNIGTRLLFNWISA  140 (284)
Q Consensus       118 ~~~vvgNLPYnIss~Il~~ll~~  140 (284)
                      .+..|+||||+.+-.=|..++..
T Consensus        16 ~~v~v~nLP~~~te~dI~~~F~~   38 (104)
T 1wg5_A           16 GFVRLRGLPFGCSKEEIVQFFSG   38 (104)
T ss_dssp             CEEEEESCCTTCCHHHHHHHTTT
T ss_pred             CEEEEECCCCCCCHHHHHHHHHH
T ss_conf             88999799987999999999877


No 367
>2dgx_A KIAA0430 protein; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=37.29  E-value=16  Score=16.07  Aligned_cols=21  Identities=14%  Similarity=0.286  Sum_probs=14.9

Q ss_pred             CEEEEECCCHHHHHHHHHHHH
Q ss_conf             201120232246788999998
Q gi|254780398|r  118 PIRIIANLPYNIGTRLLFNWI  138 (284)
Q Consensus       118 ~~~vvgNLPYnIss~Il~~ll  138 (284)
                      ....||||||++|-.=|..++
T Consensus        10 ~~i~V~NL~~~~t~~el~~~l   30 (96)
T 2dgx_A           10 ADVQVSNIDYRLSRKELQQLL   30 (96)
T ss_dssp             EEEEEESCCTTSCHHHHHHHH
T ss_pred             CEEEEECCCCCCCHHHHHHHH
T ss_conf             899998899986856876656


No 368
>1fje_B Nucleolin RBD12, protein C23; RNP, RRM, RNA binding domain, RNA-protein complex, nucleolus, structural protein/RNA complex; NMR {Mesocricetus auratus} SCOP: d.58.7.1 d.58.7.1 PDB: 1rkj_A 2krr_A
Probab=37.28  E-value=16  Score=16.07  Aligned_cols=21  Identities=33%  Similarity=0.067  Sum_probs=14.4

Q ss_pred             EEEEECCCHHHHHHHHHHHHH
Q ss_conf             011202322467889999985
Q gi|254780398|r  119 IRIIANLPYNIGTRLLFNWIS  139 (284)
Q Consensus       119 ~~vvgNLPYnIss~Il~~ll~  139 (284)
                      ...|||||+++|..-|..++.
T Consensus        15 ~vfV~nLp~~~t~~~l~~~f~   35 (175)
T 1fje_B           15 NLFIGNLNPNKSVAELKVAIS   35 (175)
T ss_dssp             EEEEECCCTTSCHHHHHHHHH
T ss_pred             EEEEECCCCCCCHHHHHHHHH
T ss_conf             899908998688999999999


No 369
>1xq1_A Putative tropinone reducatse; structural genomics, protein structure initiative, CESG, AT1G07440, reductively methylated protein; 2.10A {Arabidopsis thaliana} SCOP: c.2.1.2 PDB: 2q45_A
Probab=37.17  E-value=20  Score=15.45  Aligned_cols=62  Identities=15%  Similarity=0.059  Sum_probs=41.7

Q ss_pred             CCCCEEEEECCCCCH---HHHHHHHCCCCEEEEECCCCCCHHHHHHHHHHHHCCCCCCHHHHCCCC
Q ss_conf             999879997589882---346775023525998425543036887875322001220000000143
Q gi|254780398|r   46 LDGITVIEIGAGPGN---LTQMLLTLGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVD  108 (284)
Q Consensus        46 ~~~~~VlEIGpG~G~---LT~~Ll~~~~~~v~aiEiD~~~~~~l~~~~~~~~~~~~ii~~Dal~~d  108 (284)
                      .+++.+|=.|.+.|.   +.+.+++.++ +|+.+.++..-.+.+.+.......++..+.+|+.+.+
T Consensus        12 L~gK~alITGas~GIG~aiA~~la~~Ga-~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~Dv~~~~   76 (266)
T 1xq1_A           12 LKAKTVLVTGGTKGIGHAIVEEFAGFGA-VIHTCARNEYELNECLSKWQKKGFQVTGSVCDASLRP   76 (266)
T ss_dssp             CTTCEEEETTTTSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHHHHHTTCCEEEEECCTTSHH
T ss_pred             CCCCEEEEECCCCHHHHHHHHHHHHCCC-EEEEEECCHHHHHHHHHHHHHCCCEEEEEECCCCCHH
T ss_conf             9999899927986899999999998799-9999979999999999998732980899985689999


No 370
>2cpy_A RNA-binding protein 12; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=37.15  E-value=13  Score=16.56  Aligned_cols=22  Identities=18%  Similarity=0.453  Sum_probs=17.6

Q ss_pred             EEEEECCCHHHHHHHHHHHHHH
Q ss_conf             0112023224678899999852
Q gi|254780398|r  119 IRIIANLPYNIGTRLLFNWISA  140 (284)
Q Consensus       119 ~~vvgNLPYnIss~Il~~ll~~  140 (284)
                      ...|+||||+++..=|..++..
T Consensus        17 ~v~v~nLp~~~t~~di~~~F~~   38 (114)
T 2cpy_A           17 CAHITNIPFSITKMDVLQFLEG   38 (114)
T ss_dssp             EEEEESCCTTSCHHHHHHHTTT
T ss_pred             EEEEECCCCCCCHHHHHHHHHH
T ss_conf             8999699998989999999887


No 371
>2bgk_A Rhizome secoisolariciresinol dehydrogenase; oxidoreductase; 1.6A {Podophyllum peltatum} SCOP: c.2.1.2 PDB: 2bgl_A* 2bgm_A*
Probab=37.14  E-value=20  Score=15.45  Aligned_cols=63  Identities=17%  Similarity=0.299  Sum_probs=43.4

Q ss_pred             CCCCCCEEEEECCCCC---HHHHHHHHCCCCEEEEECCCCCCHHHHHHHHHHHHCCCCCCHHHHCCCC
Q ss_conf             9899987999758988---2346775023525998425543036887875322001220000000143
Q gi|254780398|r   44 GSLDGITVIEIGAGPG---NLTQMLLTLGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVD  108 (284)
Q Consensus        44 ~~~~~~~VlEIGpG~G---~LT~~Ll~~~~~~v~aiEiD~~~~~~l~~~~~~~~~~~~ii~~Dal~~d  108 (284)
                      +..+++.+|=-|.+.|   ++.+.|++.++ +|+...++..-.+.+.+.... .+++..+.+|+.+.+
T Consensus        12 ~rL~gKvalVTGas~GIG~aiA~~la~~Ga-~V~i~~r~~~~~~~~~~~~~~-~~~~~~~~~Dvt~~~   77 (278)
T 2bgk_A           12 NRLQDKVAIITGGAGGIGETTAKLFVRYGA-KVVIADIADDHGQKVCNNIGS-PDVISFVHCDVTKDE   77 (278)
T ss_dssp             CTTTTCEEEEESTTSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHHHCC-TTTEEEEECCTTCHH
T ss_pred             CCCCCCEEEEECCCCHHHHHHHHHHHHCCC-EEEEEECCHHHHHHHHHHHCC-CCCEEEEECCCCCHH
T ss_conf             777999899948687899999999998799-899997988999999998358-996799985789999


No 372
>2pd4_A Enoyl-[acyl-carrier-protein] reductase [NADH]; antibacterial target, type II fatty acid biosynthesis, enoyl-ACP-reductase, FABI; HET: NAD DCN; 2.30A {Helicobacter pylori} SCOP: c.2.1.2 PDB: 2pd3_A*
Probab=37.12  E-value=20  Score=15.45  Aligned_cols=63  Identities=16%  Similarity=0.202  Sum_probs=43.9

Q ss_pred             CCCCCCEEEEECC-C-CC---HHHHHHHHCCCCEEEEECCCCCCHHHHHHHHHHHHCCCCCCHHHHCCCC
Q ss_conf             9899987999758-9-88---2346775023525998425543036887875322001220000000143
Q gi|254780398|r   44 GSLDGITVIEIGA-G-PG---NLTQMLLTLGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVD  108 (284)
Q Consensus        44 ~~~~~~~VlEIGp-G-~G---~LT~~Ll~~~~~~v~aiEiD~~~~~~l~~~~~~~~~~~~ii~~Dal~~d  108 (284)
                      +..+++.+|=.|+ | .|   ++.+.+++.++ +|+...+++...+.+++...... ....+.+|....+
T Consensus         2 ~~L~gK~alITGaag~~GIG~aiA~~la~~G~-~V~i~~r~~~~~~~~~~~~~~~~-~~~~~~~d~~~~~   69 (275)
T 2pd4_A            2 GFLKGKKGLIVGVANNKSIAYGIAQSCFNQGA-TLAFTYLNESLEKRVRPIAQELN-SPYVYELDVSKEE   69 (275)
T ss_dssp             CTTTTCEEEEECCCSTTSHHHHHHHHHHTTTC-EEEEEESSTTTHHHHHHHHHHTT-CCCEEECCTTCHH
T ss_pred             CCCCCCEEEEECCCCCCHHHHHHHHHHHHCCC-EEEEEECCHHHHHHHHHHHHHCC-CCEEEEEECCCHH
T ss_conf             88799889998999984899999999998799-99999688799999999985368-8359984145378


No 373
>1x4c_A Splicing factor, arginine/serine-rich 1; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=37.08  E-value=12  Score=16.83  Aligned_cols=22  Identities=14%  Similarity=0.108  Sum_probs=18.4

Q ss_pred             EEEEECCCHHHHHHHHHHHHHH
Q ss_conf             0112023224678899999852
Q gi|254780398|r  119 IRIIANLPYNIGTRLLFNWISA  140 (284)
Q Consensus       119 ~~vvgNLPYnIss~Il~~ll~~  140 (284)
                      ...|+|||++++.+-|..++..
T Consensus        17 ~l~V~nlp~~~t~~~L~~~F~~   38 (108)
T 1x4c_A           17 RVVVSGLPPSGSWQDLKDHMRE   38 (108)
T ss_dssp             EEEEESCCSSCCHHHHHHHHGG
T ss_pred             EEEEECCCCCCHHHHHHHHHHH
T ss_conf             9999779998609999999843


No 374
>1wel_A RNA-binding protein 12; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=37.04  E-value=14  Score=16.47  Aligned_cols=22  Identities=9%  Similarity=0.389  Sum_probs=17.9

Q ss_pred             EEEEECCCHHHHHHHHHHHHHH
Q ss_conf             0112023224678899999852
Q gi|254780398|r  119 IRIIANLPYNIGTRLLFNWISA  140 (284)
Q Consensus       119 ~~vvgNLPYnIss~Il~~ll~~  140 (284)
                      ...|+||||+++-.=|..++..
T Consensus        27 ~i~v~nLp~~~te~dl~~~F~~   48 (124)
T 1wel_A           27 CVYLKGLPFEAENKHVIDFFKK   48 (124)
T ss_dssp             EEEEECCCTTCCHHHHHHHSCS
T ss_pred             EEEEECCCCCCCHHHHHHHHHC
T ss_conf             9999798984959998768871


No 375
>2dgo_A Cytotoxic granule-associated RNA binding protein 1; RRM domain, structural genomics, NPPSFA; NMR {Mus musculus} PDB: 2rne_A 2dh7_A
Probab=36.92  E-value=13  Score=16.51  Aligned_cols=21  Identities=14%  Similarity=0.110  Sum_probs=17.7

Q ss_pred             EEEECCCHHHHHHHHHHHHHH
Q ss_conf             112023224678899999852
Q gi|254780398|r  120 RIIANLPYNIGTRLLFNWISA  140 (284)
Q Consensus       120 ~vvgNLPYnIss~Il~~ll~~  140 (284)
                      ..||||||.++-.-|..++..
T Consensus        18 lfV~nLp~~~te~~L~~~F~~   38 (115)
T 2dgo_A           18 VFVGDLSPEITTEDIKAAFAP   38 (115)
T ss_dssp             EEEESCCTTCCHHHHHHHHGG
T ss_pred             EEEECCCCCCCHHHHHHHHHH
T ss_conf             999799998899999999860


No 376
>2dh8_A DAZ-associated protein 1; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=36.83  E-value=9.7  Score=17.38  Aligned_cols=21  Identities=14%  Similarity=0.276  Sum_probs=17.8

Q ss_pred             EEEECCCHHHHHHHHHHHHHH
Q ss_conf             112023224678899999852
Q gi|254780398|r  120 RIIANLPYNIGTRLLFNWISA  140 (284)
Q Consensus       120 ~vvgNLPYnIss~Il~~ll~~  140 (284)
                      ..||||||.++-.-|..++..
T Consensus        19 ifV~nLp~~~te~~l~~~F~~   39 (105)
T 2dh8_A           19 LFVGGLDWSTTQETLRSYFSQ   39 (105)
T ss_dssp             ECCBSCCTTCCHHHHHHHHHT
T ss_pred             EEEECCCCCCCHHHHHHHHHH
T ss_conf             999499998859999867760


No 377
>1wg1_A KIAA1579 protein, homolog EXC-7; RBD, structural genomics, riken structural genomics/proteomics initiative, RSGI, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 1wi6_A
Probab=36.82  E-value=11  Score=17.12  Aligned_cols=23  Identities=13%  Similarity=0.255  Sum_probs=18.2

Q ss_pred             CEEEEECCCHHHHHHHHHHHHHH
Q ss_conf             20112023224678899999852
Q gi|254780398|r  118 PIRIIANLPYNIGTRLLFNWISA  140 (284)
Q Consensus       118 ~~~vvgNLPYnIss~Il~~ll~~  140 (284)
                      ....|||||+++|.+=|..++..
T Consensus         6 ~~i~V~nlp~~~t~~~l~~lF~~   28 (88)
T 1wg1_A            6 SGILVKNLPQDSNCQEVHDLLKD   28 (88)
T ss_dssp             CCEEEESCCSSCCHHHHHHHTCS
T ss_pred             CEEEEECCCCCCCHHHHHHHHHH
T ss_conf             89999799999999999999974


No 378
>2mss_A Protein (musashi1); RNA-binding domain, RNA binding protein; NMR {Mus musculus} SCOP: d.58.7.1 PDB: 2mst_A
Probab=36.79  E-value=12  Score=16.90  Aligned_cols=21  Identities=10%  Similarity=0.115  Sum_probs=17.4

Q ss_pred             EEECCCHHHHHHHHHHHHHHH
Q ss_conf             120232246788999998520
Q gi|254780398|r  121 IIANLPYNIGTRLLFNWISAD  141 (284)
Q Consensus       121 vvgNLPYnIss~Il~~ll~~~  141 (284)
                      .|||||++++-.-|..++...
T Consensus         3 fV~nLp~~~t~~~l~~~f~~~   23 (75)
T 2mss_A            3 FVGGLSVNTTVEDVKHYFEQF   23 (75)
T ss_dssp             EEECCCSSCCHHHHHHHHHTT
T ss_pred             EEECCCCCCCHHHHHHHHHHH
T ss_conf             993899989899999998871


No 379
>3iei_A Leucine carboxyl methyltransferase 1; LCMT-1, S-adenosyl-L-methionine; HET: SAH MES; 1.90A {Homo sapiens} PDB: 3mnt_A*
Probab=36.47  E-value=20  Score=15.39  Aligned_cols=41  Identities=17%  Similarity=0.059  Sum_probs=30.0

Q ss_pred             CCEEEEECCCCCHHHHHHHHCCCCEEEEECCCCCCHHHHHH
Q ss_conf             98799975898823467750235259984255430368878
Q gi|254780398|r   48 GITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKD   88 (284)
Q Consensus        48 ~~~VlEIGpG~G~LT~~Ll~~~~~~v~aiEiD~~~~~~l~~   88 (284)
                      ..-|+-+|+|.-.+--.|...+...+..+|+|-.-+-..|.
T Consensus        91 ~~QVV~LGaG~DTr~~RL~~~~~~~~~~~EvD~p~v~~~K~  131 (334)
T 3iei_A           91 HCQIVNLGAGMDTTFWRLKDEDLLSSKYFEVDFPMIVTRKL  131 (334)
T ss_dssp             CSEEEEETCTTCCHHHHHHHTTCCCSEEEEEECHHHHHHHH
T ss_pred             CCEEEEECCCCCCHHHHHCCCCCCCCEEEECCCHHHHHHHH
T ss_conf             86799958776563555066668997699788789999999


No 380
>1fcd_A Flavocytochrome C sulfide dehydrogenase (flavin- binding subunit); electron transport(flavocytochrome); HET: FAD HEM; 2.53A {Allochromatium vinosum} SCOP: c.3.1.5 c.3.1.5 d.87.1.1
Probab=35.94  E-value=21  Score=15.33  Aligned_cols=64  Identities=19%  Similarity=0.439  Sum_probs=37.9

Q ss_pred             CCCEEEEECCCCCHHHHH--HHHCCCC-EEEEECCCCCCH--HHHHHH-------------HHH-HHCCCCCCHHHHCCC
Q ss_conf             998799975898823467--7502352-599842554303--688787-------------532-200122000000014
Q gi|254780398|r   47 DGITVIEIGAGPGNLTQM--LLTLGAR-KVIVIEKDQQFF--PILKDI-------------SSQ-HPNRLEIIQDDALKV  107 (284)
Q Consensus        47 ~~~~VlEIGpG~G~LT~~--Ll~~~~~-~v~aiEiD~~~~--~~l~~~-------------~~~-~~~~~~ii~~Dal~~  107 (284)
                      .|+.|+=||.|.+.||-+  |.+.++. +|+.||..+.+.  ..+...             +.. .+..++++++-+..+
T Consensus         1 ~gKkVVIvGgG~AGl~aA~~L~~~~~~~~VtlId~~~~~~~~p~~~~v~~g~~~~~~~~~~~~~l~~~gi~~i~~~v~~I   80 (401)
T 1fcd_A            1 AGRKVVVVGGGTGGATAAKYIKLADPSIEVTLIEPNTDYYTCYLSNEVIGGDRKLESIKHGYDGLRAHGIQVVHDSATGI   80 (401)
T ss_dssp             CCCEEEEECCSHHHHHHHHHHHHHCTTSEEEEECSCSCEECSTTHHHHHHTSSCGGGGEECSHHHHTTTEEEECCCEEEC
T ss_pred             CCCEEEEECCHHHHHHHHHHHHCCCCCCCEEEEECCCCCCCCCCHHHHHCCCCCHHHHHCCHHHHHHCCCEEEEEEEEEE
T ss_conf             93819999971999999999970294896899938988705113899973878899950699999878989995458999


Q ss_pred             CHH
Q ss_conf             315
Q gi|254780398|r  108 DFE  110 (284)
Q Consensus       108 d~~  110 (284)
                      |..
T Consensus        81 D~~   83 (401)
T 1fcd_A           81 DPD   83 (401)
T ss_dssp             CTT
T ss_pred             ECC
T ss_conf             756


No 381
>2dnn_A RNA-binding protein 12; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=35.86  E-value=8.7  Score=17.66  Aligned_cols=23  Identities=4%  Similarity=0.145  Sum_probs=18.0

Q ss_pred             CEEEEECCCHHHHHHHHHHHHHH
Q ss_conf             20112023224678899999852
Q gi|254780398|r  118 PIRIIANLPYNIGTRLLFNWISA  140 (284)
Q Consensus       118 ~~~vvgNLPYnIss~Il~~ll~~  140 (284)
                      ....|+||||+++-.=|..++..
T Consensus        17 ~~v~v~nLp~~~te~~i~~~F~~   39 (109)
T 2dnn_A           17 LYVSVHGMPFSAMENDVRDFFHG   39 (109)
T ss_dssp             HEEEEECCCSSCCHHHHHHHTTT
T ss_pred             CEEEEECCCCCCCHHHHHHHHCC
T ss_conf             99999799986989999998545


No 382
>2dnl_A Cytoplasmic polyadenylation element binding protein 3; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=35.74  E-value=11  Score=17.01  Aligned_cols=21  Identities=14%  Similarity=0.189  Sum_probs=17.9

Q ss_pred             EEEECCCHHHHHHHHHHHHHH
Q ss_conf             112023224678899999852
Q gi|254780398|r  120 RIIANLPYNIGTRLLFNWISA  140 (284)
Q Consensus       120 ~vvgNLPYnIss~Il~~ll~~  140 (284)
                      ..||||||++|-.-|..++..
T Consensus        11 vfVgnLp~~~te~~L~~~F~~   31 (114)
T 2dnl_A           11 VFVGGLPPDIDEDEITASFRR   31 (114)
T ss_dssp             EEEECCCTTCCHHHHHHHTTT
T ss_pred             EEECCCCCCCCHHHHHHHHHH
T ss_conf             999099976587899999985


No 383
>1yvv_A Amine oxidase, flavin-containing; oxidoreductase, PSR10, Q888A4, X-RAY, structure, PSI, protein structure initiative; HET: FAD; 2.50A {Pseudomonas syringae} PDB: 3kkj_A*
Probab=35.73  E-value=16  Score=15.99  Aligned_cols=32  Identities=22%  Similarity=0.338  Sum_probs=24.6

Q ss_pred             EEEEECCCCCHHHHHH--HHCCCCEEEEECCCCCC
Q ss_conf             7999758988234677--50235259984255430
Q gi|254780398|r   50 TVIEIGAGPGNLTQML--LTLGARKVIVIEKDQQF   82 (284)
Q Consensus        50 ~VlEIGpG~G~LT~~L--l~~~~~~v~aiEiD~~~   82 (284)
                      .|+=||+|+..||-++  .+.+. .|+.+|..+..
T Consensus         4 dV~IVGaGpaGL~~A~~La~~G~-~V~viEk~~~~   37 (336)
T 1yvv_A            4 PIAIIGTGIAGLSAAQALTAAGH-QVHLFDKSRGS   37 (336)
T ss_dssp             CEEEECCSHHHHHHHHHHHHTTC-CEEEECSSSSS
T ss_pred             CEEEECCCHHHHHHHHHHHHCCC-CEEEEECCCCC
T ss_conf             79998947999999999997899-78999798999


No 384
>1fj7_A Nucleolin RBD1, protein C23; RNP, RRM, RNA binding domain, nucleolus, structural protein; NMR {Mesocricetus auratus} SCOP: d.58.7.1
Probab=35.73  E-value=13  Score=16.51  Aligned_cols=22  Identities=32%  Similarity=0.064  Sum_probs=17.7

Q ss_pred             EEEEECCCHHHHHHHHHHHHHH
Q ss_conf             0112023224678899999852
Q gi|254780398|r  119 IRIIANLPYNIGTRLLFNWISA  140 (284)
Q Consensus       119 ~~vvgNLPYnIss~Il~~ll~~  140 (284)
                      ...||||||++|..-|..++..
T Consensus        19 ~ifV~nLp~~~te~~L~~~F~~   40 (101)
T 1fj7_A           19 NLFIGNLNPNKSVAELKVAISE   40 (101)
T ss_dssp             EEEEECCCTTSCHHHHHHHHHH
T ss_pred             EEEEECCCCCCCHHHHHHHHHC
T ss_conf             9999798877708998866642


No 385
>2qy6_A UPF0209 protein YFCK; structural genomics, unknown function, PSI-2, protein structure initiative; 2.00A {Escherichia coli O157}
Probab=35.66  E-value=21  Score=15.31  Aligned_cols=70  Identities=17%  Similarity=0.024  Sum_probs=37.2

Q ss_pred             CCCCCCCCCCCHHHHH----HHHHHCC------CCCC--CEEEEECCCCCHHHHHHHH------------CCC-CEEEEE
Q ss_conf             3365841123989999----9999719------8999--8799975898823467750------------235-259984
Q gi|254780398|r   22 KKYMGQNFLLDLNILK----KIAESSG------SLDG--ITVIEIGAGPGNLTQMLLT------------LGA-RKVIVI   76 (284)
Q Consensus        22 ~k~lGQnFL~d~~i~~----~iv~~~~------~~~~--~~VlEIGpG~G~LT~~Ll~------------~~~-~~v~ai   76 (284)
                      ...+|++|--..+.+.    ..++..+      -.++  -+|+|||-|+|-=....++            +.. -+++++
T Consensus        23 s~~f~e~YhS~~ga~~Es~~vFi~~~~L~~r~~~~~~~~~~IlEiGFG~GlNfl~t~~~~~~~~~~~~~~~~~~L~yisi  102 (257)
T 2qy6_A           23 SRDFDDVYFSNDNGLEETRYVFLGGNQLEARFPEHPHPLFVVAESGFGTGLNFLTLWQAFDQFREAHPQAQLQRLHFISF  102 (257)
T ss_dssp             ETTTTEESSCTTTHHHHHHHHHHHHTTHHHHGGGCSSSEEEEEESCCTTSHHHHHHHHHHHHHHHHCTTSSCCEEEEEEE
T ss_pred             CCCCCCCCCCCCCHHHHHHHHHHCCCCCHHHHHCCCCCCEEEEEECCCCHHHHHHHHHHHHHHHHHCCCCCCEEEEEEEE
T ss_conf             78769746798779999999723669986988639988549999478610899999999997434265554127999961


Q ss_pred             CCCCCCHHHHHHHHH
Q ss_conf             255430368878753
Q gi|254780398|r   77 EKDQQFFPILKDISS   91 (284)
Q Consensus        77 EiD~~~~~~l~~~~~   91 (284)
                      |.++--.+.+.+...
T Consensus       103 E~~Pl~~~~l~~~~~  117 (257)
T 2qy6_A          103 EKFPLTRADLALAHQ  117 (257)
T ss_dssp             ESSCCCHHHHHHHHT
T ss_pred             CCCCCCHHHHHHHHH
T ss_conf             577766778876541


No 386
>2hgm_A HNRPF protein, heterogeneous nuclear ribonucleoprotein F; RNA recognition motif, G-tract, G-quadruplex, alternative splicing, RNA binding protein; NMR {Homo sapiens} PDB: 2kg0_A
Probab=35.66  E-value=14  Score=16.36  Aligned_cols=24  Identities=13%  Similarity=0.239  Sum_probs=18.9

Q ss_pred             CEEEEECCCHHHHHHHHHHHHHHH
Q ss_conf             201120232246788999998520
Q gi|254780398|r  118 PIRIIANLPYNIGTRLLFNWISAD  141 (284)
Q Consensus       118 ~~~vvgNLPYnIss~Il~~ll~~~  141 (284)
                      ....|+||||+.+..-|..++...
T Consensus        43 ~~v~V~nLP~~~te~di~~~F~~~   66 (126)
T 2hgm_A           43 GFVRLRGLPFGCTKEEIVQFFSGL   66 (126)
T ss_dssp             CEEEEECCCTTCCHHHHHHHTTTS
T ss_pred             CEEEEECCCCCCCHHHHHHHHHHC
T ss_conf             899993569989899999998555


No 387
>1rsg_A FMS1 protein; FAD binding motif, oxidoreductase; HET: FAD; 1.90A {Saccharomyces cerevisiae} PDB: 1z6l_A* 3bi2_A* 3bi4_A* 3bi5_A* 3bnm_B* 3bnu_B* 3cn8_B* 3cnd_B* 3cnp_B* 3cns_A* 3cnt_B* 1yy5_A* 1xpq_A*
Probab=35.57  E-value=17  Score=15.80  Aligned_cols=34  Identities=32%  Similarity=0.436  Sum_probs=20.2

Q ss_pred             CCEEEEECCCCCHHH--HHHHHCCCCEEEEECCCCC
Q ss_conf             987999758988234--6775023525998425543
Q gi|254780398|r   48 GITVIEIGAGPGNLT--QMLLTLGARKVIVIEKDQQ   81 (284)
Q Consensus        48 ~~~VlEIGpG~G~LT--~~Ll~~~~~~v~aiEiD~~   81 (284)
                      ...|+=||+|...|+  ..|.+.+.+.|+.+|-..+
T Consensus         8 ~k~V~IIGaG~aGL~aA~~L~~~G~~~V~VlEA~~r   43 (516)
T 1rsg_A            8 KKKVIIIGAGIAGLKAASTLHQNGIQDCLVLEARDR   43 (516)
T ss_dssp             EEEEEEECCBHHHHHHHHHHHHTTCCSEEEECSSSS
T ss_pred             CCCEEEECCCHHHHHHHHHHHHCCCCCEEEEECCCC
T ss_conf             798899897889999999998679997899968998


No 388
>1no8_A ALY; RBD, REF1-I, BEF, mRNA export factor, RNA binding protein; NMR {Mus musculus} SCOP: d.58.7.1
Probab=35.53  E-value=13  Score=16.52  Aligned_cols=22  Identities=9%  Similarity=0.255  Sum_probs=17.4

Q ss_pred             EEEEECCCHHHHHHHHHHHHHH
Q ss_conf             0112023224678899999852
Q gi|254780398|r  119 IRIIANLPYNIGTRLLFNWISA  140 (284)
Q Consensus       119 ~~vvgNLPYnIss~Il~~ll~~  140 (284)
                      -.+|+||||+++..=|..++..
T Consensus        30 ~l~V~nLp~~~~~~~l~~~F~~   51 (106)
T 1no8_A           30 KLLVSNLDFGVSDADIQELFAE   51 (106)
T ss_dssp             EEEEESCCTTCCHHHHHHHHHH
T ss_pred             EEEEECCCCCCCHHHHHHHHHH
T ss_conf             9999897997889999999987


No 389
>3p5t_L Cleavage and polyadenylation specificity factor S; RRM domain, poly(A) site recognition, RNA, nuclear, RNA BIND protein; 2.70A {Homo sapiens} PDB: 3p6y_C
Probab=35.51  E-value=13  Score=16.51  Aligned_cols=21  Identities=19%  Similarity=0.126  Sum_probs=17.0

Q ss_pred             EEEECCCHHHHHHHHHHHHHH
Q ss_conf             112023224678899999852
Q gi|254780398|r  120 RIIANLPYNIGTRLLFNWISA  140 (284)
Q Consensus       120 ~vvgNLPYnIss~Il~~ll~~  140 (284)
                      ..|||||+++|-.=|..++..
T Consensus         4 lfV~nLp~~~te~~l~~~F~~   24 (90)
T 3p5t_L            4 LYIGNLTWWTTDEDLTEAVHS   24 (90)
T ss_dssp             CEEESCCTTCCHHHHHHHHHT
T ss_pred             EEECCCCCCCCHHHHHHHHHH
T ss_conf             998898998989999999865


No 390
>3beg_B Splicing factor, arginine/serine-rich 1; kinase, SR protein kinase, SR protein, PRE-mRNA splicing, alternative splicing, ATP-binding; HET: SEP ANP; 2.90A {Homo sapiens} SCOP: d.58.7.1 PDB: 2o3d_A 1wg4_A
Probab=35.26  E-value=9.1  Score=17.55  Aligned_cols=21  Identities=14%  Similarity=0.151  Sum_probs=17.4

Q ss_pred             EEEECCCHHHHHHHHHHHHHH
Q ss_conf             112023224678899999852
Q gi|254780398|r  120 RIIANLPYNIGTRLLFNWISA  140 (284)
Q Consensus       120 ~vvgNLPYnIss~Il~~ll~~  140 (284)
                      .+|+||||+++..=|..++..
T Consensus        19 v~V~NLp~~~t~~dL~~~F~~   39 (115)
T 3beg_B           19 VVVSGLPPSGSWQDLKDHMRE   39 (115)
T ss_dssp             EEEEECCSSCCTTHHHHHHGG
T ss_pred             EEEECCCCCCCHHHHHHHHCC
T ss_conf             999789898999999998413


No 391
>3b4d_A Polyadenylate-binding protein 2; RRM fold, alpha-beta sandwich structure, RNA binding domain, RNA recognition motif, acetylation; 2.00A {Homo sapiens} PDB: 3b4m_A
Probab=35.11  E-value=18  Score=15.71  Aligned_cols=22  Identities=14%  Similarity=0.129  Sum_probs=18.3

Q ss_pred             EEEEECCCHHHHHHHHHHHHHH
Q ss_conf             0112023224678899999852
Q gi|254780398|r  119 IRIIANLPYNIGTRLLFNWISA  140 (284)
Q Consensus       119 ~~vvgNLPYnIss~Il~~ll~~  140 (284)
                      ...|||||+.++..-|..++..
T Consensus         7 tlfV~nLp~~~t~~~L~~~F~~   28 (96)
T 3b4d_A            7 SIYVGNVDYGATAEELEAHFHG   28 (96)
T ss_dssp             EEEEESCCTTCCHHHHHHHHGG
T ss_pred             EEEEECCCCCCCHHHHHHHHHH
T ss_conf             9999698998999999999851


No 392
>3lov_A Protoporphyrinogen oxidase; structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PSI-2; HET: FAD; 2.06A {Exiguobacterium sibiricum}
Probab=35.07  E-value=21  Score=15.25  Aligned_cols=35  Identities=11%  Similarity=0.206  Sum_probs=20.6

Q ss_pred             CCEEEEECCCCCHHHHH--HHHCCC-CEEEEECCCCCC
Q ss_conf             98799975898823467--750235-259984255430
Q gi|254780398|r   48 GITVIEIGAGPGNLTQM--LLTLGA-RKVIVIEKDQQF   82 (284)
Q Consensus        48 ~~~VlEIGpG~G~LT~~--Ll~~~~-~~v~aiEiD~~~   82 (284)
                      ++.|+=||+|.+.||-+  |.+.+. .+|+.+|...+.
T Consensus         4 ~kkV~IIGaGisGL~aA~~L~~~~~G~~V~vlE~~~~~   41 (475)
T 3lov_A            4 SKRLVIVGGGITGLAAAYYAERAFPDLNITLLEAGERL   41 (475)
T ss_dssp             SCEEEEECCBHHHHHHHHHHHHHCTTSEEEEECSSSSS
T ss_pred             CCEEEEECCCHHHHHHHHHHHHCCCCCCEEEEECCCCC
T ss_conf             98099989888999999999836989978999379988


No 393
>1uaw_A Mouse-musashi-1; RNP-type structure, RNA binding protein; NMR {Mus musculus} SCOP: d.58.7.1
Probab=35.04  E-value=9.9  Score=17.33  Aligned_cols=20  Identities=15%  Similarity=0.275  Sum_probs=16.6

Q ss_pred             EEECCCHHHHHHHHHHHHHH
Q ss_conf             12023224678899999852
Q gi|254780398|r  121 IIANLPYNIGTRLLFNWISA  140 (284)
Q Consensus       121 vvgNLPYnIss~Il~~ll~~  140 (284)
                      .||||||++|..=|..++..
T Consensus         4 fV~nLp~~~te~~l~~~F~~   23 (77)
T 1uaw_A            4 FIGGLSWQTTQEGLREYFGQ   23 (77)
T ss_dssp             EEESCCSSCCSHHHHHHHTT
T ss_pred             EEECCCCCCCHHHHHHHHHH
T ss_conf             99679986889999999732


No 394
>3egn_A RNA-binding protein 40; RNA recognition motif (RRM), RNP motif, U11/U12-65K protein, U11/U12 DI-snRNP, U1A protein, U2B protein; 2.50A {Homo sapiens}
Probab=34.98  E-value=14  Score=16.42  Aligned_cols=23  Identities=13%  Similarity=0.007  Sum_probs=18.6

Q ss_pred             CEEEEECCCHHHHHHHHHHHHHH
Q ss_conf             20112023224678899999852
Q gi|254780398|r  118 PIRIIANLPYNIGTRLLFNWISA  140 (284)
Q Consensus       118 ~~~vvgNLPYnIss~Il~~ll~~  140 (284)
                      ....||||||+++..-|..++..
T Consensus        46 ~~l~V~NLp~~~te~~l~~~F~~   68 (143)
T 3egn_A           46 CRIYVKNLAKHVQEKDLKYIFGR   68 (143)
T ss_dssp             SEEEEEEECTTCCHHHHHHHHGG
T ss_pred             CEEEEECCCCCCCHHHHHHHHHH
T ss_conf             79999699987989999999985


No 395
>2khc_A Testis-specific RNP-type RNA binding protein; RRM, RNA recognition motif, bruno; NMR {Drosophila melanogaster}
Probab=34.62  E-value=12  Score=16.83  Aligned_cols=21  Identities=19%  Similarity=0.107  Sum_probs=17.6

Q ss_pred             EEEECCCHHHHHHHHHHHHHH
Q ss_conf             112023224678899999852
Q gi|254780398|r  120 RIIANLPYNIGTRLLFNWISA  140 (284)
Q Consensus       120 ~vvgNLPYnIss~Il~~ll~~  140 (284)
                      ..|+||||+++..-|..++..
T Consensus        43 l~V~nLp~~~t~~~l~~~F~~   63 (118)
T 2khc_A           43 LFIYHLPQEFTDTDLASTFLP   63 (118)
T ss_dssp             EEEECSCTTCCHHHHHHHTTT
T ss_pred             EEECCCCCCCCHHHHHHHHHH
T ss_conf             998589996989999999983


No 396
>1xhl_A Short-chain dehydrogenase/reductase family member (5L265), putative tropinone reductase-II...; parallel beta-sheet of seven strands in the order 3214567; HET: NDP TNE; 2.40A {Caenorhabditis elegans} SCOP: c.2.1.2
Probab=34.49  E-value=22  Score=15.19  Aligned_cols=63  Identities=16%  Similarity=0.292  Sum_probs=44.3

Q ss_pred             CCCCCEEEEECCCCC---HHHHHHHHCCCCEEEEECCCCCCHHHHHHHHHHH---HCCCCCCHHHHCCCC
Q ss_conf             899987999758988---2346775023525998425543036887875322---001220000000143
Q gi|254780398|r   45 SLDGITVIEIGAGPG---NLTQMLLTLGARKVIVIEKDQQFFPILKDISSQH---PNRLEIIQDDALKVD  108 (284)
Q Consensus        45 ~~~~~~VlEIGpG~G---~LT~~Ll~~~~~~v~aiEiD~~~~~~l~~~~~~~---~~~~~ii~~Dal~~d  108 (284)
                      ..+++.+|=-|.+.|   ++.+.|++.++ +|+...+++.-.+.+.+.....   ..++..+.+|+.+.+
T Consensus        23 rL~GKvalVTGas~GIG~aiA~~la~~Ga-~V~i~~r~~~~l~~~~~~i~~~g~~~~~v~~~~~Dvs~~~   91 (297)
T 1xhl_A           23 RFSGKSVIITGSSNGIGRSAAVIFAKEGA-QVTITGRNEDRLEETKQQILKAGVPAEKINAVVADVTEAS   91 (297)
T ss_dssp             CCTTCEEEETTCSSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHHHHHTTCCGGGEEEEECCTTSHH
T ss_pred             CCCCCEEEEECCCCHHHHHHHHHHHHCCC-EEEEEECCHHHHHHHHHHHHHCCCCCCCEEEEEEECCCHH
T ss_conf             88998899947786899999999998799-8999989999999999999974898763689980089999


No 397
>2v0x_A Lamina-associated polypeptide 2 isoforms alpha/zeta; alternative splicing, nuclear protein, phosphorylation, chromosomal protein, coiled coil; 2.2A {Mus musculus}
Probab=34.47  E-value=8.2  Score=17.81  Aligned_cols=52  Identities=17%  Similarity=0.333  Sum_probs=35.5

Q ss_pred             CCEECCCCCCCEEEEEECCCCCCC--------CCCHHHHHHHHHHHHCCCCHHHHHHHHH
Q ss_conf             000010578757887301258855--------3476789999999972731389998763
Q gi|254780398|r  192 PHVFFPSPKVTSTVIHFIPHLNPI--------PCCLESLKKITQEAFGKRRKTLRQSLKR  243 (284)
Q Consensus       192 ~~~F~P~PkVdS~vi~l~pk~~~~--------~~~~~~~~~~~~~~F~~RRK~l~~~L~~  243 (284)
                      -.-+++.|+||+.|+++..+....        +...+.++.+++..|..-.--|+-++..
T Consensus        68 ~~~w~s~P~VD~pIv~~ls~tT~p~~d~as~kd~~DKk~E~~L~r~f~aA~~alrpa~a~  127 (235)
T 2v0x_A           68 AARILSVPKVDDEILGFISEATPAAATQASSTESCDKHLDLALCRSYEAAASALQIAAHT  127 (235)
T ss_dssp             HHHHHSCCBCCHHHHHTTC-----------CTHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHCCCCCCCCCHHHHHHHHCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf             610467998637899988416789986433346336899999999999889997599999


No 398
>2cqc_A Arginine/serine-rich splicing factor 10; RNA recognition motif, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=34.30  E-value=15  Score=16.13  Aligned_cols=22  Identities=18%  Similarity=-0.040  Sum_probs=18.1

Q ss_pred             EEEEECCCHHHHHHHHHHHHHH
Q ss_conf             0112023224678899999852
Q gi|254780398|r  119 IRIIANLPYNIGTRLLFNWISA  140 (284)
Q Consensus       119 ~~vvgNLPYnIss~Il~~ll~~  140 (284)
                      ...|+|||++++..-|..++..
T Consensus        17 tl~V~nLp~~~te~~l~~~F~~   38 (95)
T 2cqc_A           17 CLGVFGLSLYTTERDLREVFSK   38 (95)
T ss_dssp             CEEEESCCSSCCHHHHHHHHHT
T ss_pred             EEEECCCCCCCCHHHHHHHHHH
T ss_conf             9998199998989999999987


No 399
>2rhc_B Actinorhodin polyketide ketoreductase; oxidoreductase, combinatorial biosynthesis, short chain dehydrogenase/reductase; HET: NAP EMO; 2.10A {Streptomyces coelicolor} SCOP: c.2.1.2 PDB: 2rh4_A* 1w4z_A* 3csd_B* 2rhr_B* 1x7g_A* 1x7h_A* 1xr3_A*
Probab=34.29  E-value=22  Score=15.17  Aligned_cols=63  Identities=16%  Similarity=0.115  Sum_probs=42.9

Q ss_pred             CCCCCEEEEECCCCC---HHHHHHHHCCCCEEEEECCCCCCHHHHHHHHHHHHCCCCCCHHHHCCCC
Q ss_conf             899987999758988---2346775023525998425543036887875322001220000000143
Q gi|254780398|r   45 SLDGITVIEIGAGPG---NLTQMLLTLGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVD  108 (284)
Q Consensus        45 ~~~~~~VlEIGpG~G---~LT~~Ll~~~~~~v~aiEiD~~~~~~l~~~~~~~~~~~~ii~~Dal~~d  108 (284)
                      ..+++.+|=-|.+.|   ++.+.|++.++ +|+...+|..-++.+.+.......++..+.+|..+.+
T Consensus        19 ~l~gKVAlVTGas~GIG~aiA~~la~~Ga-~Vvi~~r~~~~l~~~~~~i~~~g~~~~~~~~Dvt~~~   84 (277)
T 2rhc_B           19 TQDSEVALVTGATSGIGLEIARRLGKEGL-RVFVCARGEEGLRTTLKELREAGVEADGRTCDVRSVP   84 (277)
T ss_dssp             CTTSCEEEEETCSSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHHHHHTTCCEEEEECCTTCHH
T ss_pred             CCCCCEEEEECCCCHHHHHHHHHHHHCCC-EEEEEECCHHHHHHHHHHHHHCCCCEEEEEEECCCHH
T ss_conf             76997899927675999999999998799-9999979989999999999853992899992079999


No 400
>3ka7_A Oxidoreductase; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; HET: FAD; 1.80A {Methanosarcina mazei}
Probab=34.27  E-value=20  Score=15.42  Aligned_cols=12  Identities=25%  Similarity=0.235  Sum_probs=6.5

Q ss_pred             EEEECCCHHHHH
Q ss_conf             112023224678
Q gi|254780398|r  120 RIIANLPYNIGT  131 (284)
Q Consensus       120 ~vvgNLPYnIss  131 (284)
                      +||.|.|..-+.
T Consensus       243 ~VI~~~~~~~~~  254 (425)
T 3ka7_A          243 LVISNLGHAATA  254 (425)
T ss_dssp             EEEECSCHHHHH
T ss_pred             EEEECCCHHHHH
T ss_conf             999896989999


No 401
>2dhg_A TRNA selenocysteine associated protein (SECP43); RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=34.02  E-value=15  Score=16.21  Aligned_cols=22  Identities=9%  Similarity=0.368  Sum_probs=18.2

Q ss_pred             EEEEECCCHHHHHHHHHHHHHH
Q ss_conf             0112023224678899999852
Q gi|254780398|r  119 IRIIANLPYNIGTRLLFNWISA  140 (284)
Q Consensus       119 ~~vvgNLPYnIss~Il~~ll~~  140 (284)
                      ...|||||++++..-|..++..
T Consensus        11 ~lfV~nLp~~~te~~l~~~F~~   32 (104)
T 2dhg_A           11 SLFVGDLTPDVDDGMLYEFFVK   32 (104)
T ss_dssp             CEEEECCCTTCCHHHHHHHHHH
T ss_pred             EEEEECCCCCCCHHHHHHHHHH
T ss_conf             9999489984889999999865


No 402
>3n74_A 3-ketoacyl-(acyl-carrier-protein) reductase; seattle structural genomics center for infectious disease, S brucellosis; 2.20A {Brucella melitensis biovar abortus}
Probab=33.78  E-value=22  Score=15.12  Aligned_cols=59  Identities=22%  Similarity=0.323  Sum_probs=42.1

Q ss_pred             CCCCEEEEECCCCC---HHHHHHHHCCCCEEEEECCCCCCHHHHHHHHHHHHCCCCCCHHHHCCCC
Q ss_conf             99987999758988---2346775023525998425543036887875322001220000000143
Q gi|254780398|r   46 LDGITVIEIGAGPG---NLTQMLLTLGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVD  108 (284)
Q Consensus        46 ~~~~~VlEIGpG~G---~LT~~Ll~~~~~~v~aiEiD~~~~~~l~~~~~~~~~~~~ii~~Dal~~d  108 (284)
                      .+++.+|=.|.+.|   ++.+.|++.++ +|+.+.+|+.-.+.+.+.+   .++...+.+|+.+.+
T Consensus         7 L~gK~alVTGas~GIG~aia~~la~~Ga-~V~~~~r~~~~l~~~~~~l---~~~~~~~~~Dv~~~~   68 (261)
T 3n74_A            7 LEGKVALITGAGSGFGEGMAKRFAKGGA-KVVIVDRDKAGAERVAGEI---GDAALAVAADISKEA   68 (261)
T ss_dssp             TTTCEEEEETTTSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHHH---CTTEEEEECCTTSHH
T ss_pred             CCCCEEEEECCCCHHHHHHHHHHHHCCC-EEEEEECCHHHHHHHHHHH---CCCEEEEEEECCCHH
T ss_conf             8999899938887899999999998799-8999989999999999983---896799996279999


No 403
>2wbr_A GW182, gawky, LD47780P; DNA-binding protein, RRM, RBD, TNRC6A, mirnas, P-bodies, argonaute, mRNA decay; NMR {Drosophila melanogaster}
Probab=33.74  E-value=15  Score=16.11  Aligned_cols=25  Identities=20%  Similarity=0.126  Sum_probs=19.7

Q ss_pred             CCCEEEEECCCHHHHHHHHHHHHHH
Q ss_conf             2220112023224678899999852
Q gi|254780398|r  116 SSPIRIIANLPYNIGTRLLFNWISA  140 (284)
Q Consensus       116 ~~~~~vvgNLPYnIss~Il~~ll~~  140 (284)
                      +....+|+|||++++..-|..+++.
T Consensus         6 ~s~~l~v~NL~~~vt~~~L~~lf~~   30 (89)
T 2wbr_A            6 GSSWLLLKNLTAQIDGPTLRTLCMQ   30 (89)
T ss_dssp             CCCEEEEECCCTTCCCHHHHHHHHH
T ss_pred             CCCEEEEECCCCCCCHHHHHHHHHH
T ss_conf             8778999799998999999999998


No 404
>1whx_A Hypothetical protein riken cDNA 1200009A02; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1
Probab=33.32  E-value=17  Score=15.82  Aligned_cols=22  Identities=18%  Similarity=0.128  Sum_probs=17.6

Q ss_pred             EEEEECCCHHHHHHHHHHHHHH
Q ss_conf             0112023224678899999852
Q gi|254780398|r  119 IRIIANLPYNIGTRLLFNWISA  140 (284)
Q Consensus       119 ~~vvgNLPYnIss~Il~~ll~~  140 (284)
                      ..+|+||||.++-.=|..++..
T Consensus        12 ~l~V~NLp~~~t~~~L~~~F~~   33 (111)
T 1whx_A           12 VILAKNLPAGTLAAEIQETFSR   33 (111)
T ss_dssp             EEEEESCCTTCCHHHHHHHHHT
T ss_pred             EEEEECCCCCCCHHHHHHHHHH
T ss_conf             9999799898989999999856


No 405
>2x1f_A MRNA 3'-END-processing protein RNA15; transcription-RNA complex, mRNA processing; 1.60A {Saccharomyces cerevisiae} PDB: 2x1b_A 2x1a_A 2km8_B
Probab=33.30  E-value=18  Score=15.76  Aligned_cols=22  Identities=14%  Similarity=0.422  Sum_probs=18.0

Q ss_pred             EEEEECCCHHHHHHHHHHHHHH
Q ss_conf             0112023224678899999852
Q gi|254780398|r  119 IRIIANLPYNIGTRLLFNWISA  140 (284)
Q Consensus       119 ~~vvgNLPYnIss~Il~~ll~~  140 (284)
                      ...|||||++++..-|..++..
T Consensus         4 tl~V~nLp~~~te~~L~~~F~~   25 (96)
T 2x1f_A            4 VVYLGSIPYDQTEEQILDLCSN   25 (96)
T ss_dssp             EEEEESCCTTCCHHHHHHHHHT
T ss_pred             EEEEECCCCCCCHHHHHHHHHH
T ss_conf             8999699986999999999997


No 406
>2cpj_A Non-POU domain-containing octamer-binding protein; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=33.27  E-value=6.7  Score=18.36  Aligned_cols=21  Identities=19%  Similarity=0.284  Sum_probs=17.3

Q ss_pred             EEEECCCHHHHHHHHHHHHHH
Q ss_conf             112023224678899999852
Q gi|254780398|r  120 RIIANLPYNIGTRLLFNWISA  140 (284)
Q Consensus       120 ~vvgNLPYnIss~Il~~ll~~  140 (284)
                      ..|+|||++++-.-|..++..
T Consensus        18 lfV~nlp~~~t~~~L~~~F~~   38 (99)
T 2cpj_A           18 LFVGNLPPDITEEEMRKLFEK   38 (99)
T ss_dssp             EEEESCCTTCCHHHHHHHTST
T ss_pred             EEEECCCCCCCHHHHHHHHHH
T ss_conf             999598986989999999984


No 407
>1p27_B RNA-binding protein 8A; nuclear protein, mRNA splicing, alternative splicing; 2.00A {Homo sapiens} SCOP: d.58.7.1
Probab=33.12  E-value=22  Score=15.16  Aligned_cols=23  Identities=4%  Similarity=-0.016  Sum_probs=18.4

Q ss_pred             CEEEEECCCHHHHHHHHHHHHHH
Q ss_conf             20112023224678899999852
Q gi|254780398|r  118 PIRIIANLPYNIGTRLLFNWISA  140 (284)
Q Consensus       118 ~~~vvgNLPYnIss~Il~~ll~~  140 (284)
                      ....||||||+++-.-|..++..
T Consensus        24 ~~l~V~nL~~~~~e~~L~~~F~~   46 (106)
T 1p27_B           24 WILFVTGVHEEATEEDIHDKFAE   46 (106)
T ss_dssp             EEEEEECCCTTCCHHHHHHHHGG
T ss_pred             CEEEECCCCCCCCHHHHHHHHHH
T ss_conf             79998689998999999999986


No 408
>2dnq_A RNA-binding protein 4B; RRM domain,RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=33.06  E-value=14  Score=16.31  Aligned_cols=22  Identities=18%  Similarity=0.191  Sum_probs=17.9

Q ss_pred             EEEECCCHHHHHHHHHHHHHHH
Q ss_conf             1120232246788999998520
Q gi|254780398|r  120 RIIANLPYNIGTRLLFNWISAD  141 (284)
Q Consensus       120 ~vvgNLPYnIss~Il~~ll~~~  141 (284)
                      ..|||||++++..-|..++...
T Consensus        11 lfV~nlp~~~t~~~l~~~F~~~   32 (90)
T 2dnq_A           11 LFIGNLPREATEQEIRSLFEQY   32 (90)
T ss_dssp             EEEESCCSSCCHHHHHHHHHTS
T ss_pred             EEEECCCCCCCHHHHHHHHHHH
T ss_conf             9995899869999999999871


No 409
>1cvj_A Polyadenylate binding protein 1; RRM, protein-RNA complex, gene regulation-RNA complex; HET: A; 2.60A {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 2k8g_A
Probab=32.98  E-value=17  Score=15.92  Aligned_cols=24  Identities=29%  Similarity=0.261  Sum_probs=18.0

Q ss_pred             CEEEEECCCHHHHHHHHHHHHHHH
Q ss_conf             201120232246788999998520
Q gi|254780398|r  118 PIRIIANLPYNIGTRLLFNWISAD  141 (284)
Q Consensus       118 ~~~vvgNLPYnIss~Il~~ll~~~  141 (284)
                      ....|+|||++++..-|..++...
T Consensus        99 ~~l~v~nl~~~~~~~~l~~~f~~~  122 (190)
T 1cvj_A           99 GNIFIKNLDKSIDNKALYDTFSAF  122 (190)
T ss_dssp             TEEEEESCCSSCCHHHHHHHHHTT
T ss_pred             CCCCCCCCCCCCCHHHHHHHHHHC
T ss_conf             200003767678899999999756


No 410
>3k89_A Malonyl COA-ACP transacylase; bacterial blight, XOO0880, FABD, xanthomonas oryzae PV. oryzae KACC10331; 1.60A {Xanthomonas oryzae PV} PDB: 3een_A
Probab=32.91  E-value=23  Score=15.03  Aligned_cols=16  Identities=19%  Similarity=0.370  Sum_probs=9.1

Q ss_pred             EEEEECCCCCHHHHHH
Q ss_conf             7999758988234677
Q gi|254780398|r   50 TVIEIGAGPGNLTQML   65 (284)
Q Consensus        50 ~VlEIGpG~G~LT~~L   65 (284)
                      ...=+|-..|-++-..
T Consensus        87 P~~v~GhSlGE~aAl~  102 (314)
T 3k89_A           87 PALLAGHSLGEYTALV  102 (314)
T ss_dssp             EEEEEESTHHHHHHHH
T ss_pred             CCCHHHCCCCHHHHHH
T ss_conf             5210025644799999


No 411
>1x4b_A Heterogeneous nuclear ribonucleoproteins A2/B1; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=32.86  E-value=14  Score=16.40  Aligned_cols=21  Identities=19%  Similarity=0.297  Sum_probs=18.0

Q ss_pred             EEEECCCHHHHHHHHHHHHHH
Q ss_conf             112023224678899999852
Q gi|254780398|r  120 RIIANLPYNIGTRLLFNWISA  140 (284)
Q Consensus       120 ~vvgNLPYnIss~Il~~ll~~  140 (284)
                      ..||||||.++..-|..++..
T Consensus        30 lfV~nL~~~~te~~L~~~F~~   50 (116)
T 1x4b_A           30 LFIGGLSFETTEESLRNYYEQ   50 (116)
T ss_dssp             EEEECCTTCCCHHHHHHHHTS
T ss_pred             EEEECCCCCCCHHHHHHHHHH
T ss_conf             999089986889999999986


No 412
>2ywk_A Putative RNA-binding protein 11; RRM-domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; 1.54A {Homo sapiens}
Probab=32.85  E-value=22  Score=15.10  Aligned_cols=22  Identities=14%  Similarity=0.314  Sum_probs=18.3

Q ss_pred             EEEEECCCHHHHHHHHHHHHHH
Q ss_conf             0112023224678899999852
Q gi|254780398|r  119 IRIIANLPYNIGTRLLFNWISA  140 (284)
Q Consensus       119 ~~vvgNLPYnIss~Il~~ll~~  140 (284)
                      ...|+|||+.++..-|..++..
T Consensus        18 tl~V~nlp~~~t~~~l~~~F~~   39 (95)
T 2ywk_A           18 TVFVGNLEARVREEILYELFLQ   39 (95)
T ss_dssp             EEEEECCCTTCCHHHHHHHHGG
T ss_pred             EEEEECCCCCCCHHHHHHHHHH
T ss_conf             9999799997989999999986


No 413
>3ic9_A Dihydrolipoamide dehydrogenase; APC62701, structural genomics, PSI-2, protein structure initiative; HET: FAD; 2.15A {Colwellia psychrerythraea 34H}
Probab=32.68  E-value=23  Score=15.09  Aligned_cols=34  Identities=26%  Similarity=0.240  Sum_probs=14.7

Q ss_pred             CCEEEEECCCCCHHHH--HHHHCCCCEEEEECCCCCC
Q ss_conf             9879997589882346--7750235259984255430
Q gi|254780398|r   48 GITVIEIGAGPGNLTQ--MLLTLGARKVIVIEKDQQF   82 (284)
Q Consensus        48 ~~~VlEIGpG~G~LT~--~Ll~~~~~~v~aiEiD~~~   82 (284)
                      ...|+=||.|.-++-.  .+...+ .+|+.+|..+++
T Consensus       174 pk~vvIIGgG~ig~E~A~~l~~~G-~~Vtli~r~~~~  209 (492)
T 3ic9_A          174 PKSVAVFGPGVIGLELGQALSRLG-VIVKVFGRSGSV  209 (492)
T ss_dssp             CSEEEEESSCHHHHHHHHHHHHTT-CEEEEECCTTCC
T ss_pred             CCEEEEECCCCCCHHHHHHHHHCC-CEEEEEEEECCC
T ss_conf             975999736643016779898569-778998740456


No 414
>2aym_A U1 small nuclear ribonucleoprotein A; SNF RBD2, RNA binding, RNA splicing, solution structure, RNA binding protein; NMR {Drosophila melanogaster} SCOP: d.58.7.1 PDB: 2b0g_A 2u1a_A
Probab=32.68  E-value=19  Score=15.50  Aligned_cols=24  Identities=21%  Similarity=0.297  Sum_probs=19.0

Q ss_pred             CCEEEEECCCHHHHHHHHHHHHHH
Q ss_conf             220112023224678899999852
Q gi|254780398|r  117 SPIRIIANLPYNIGTRLLFNWISA  140 (284)
Q Consensus       117 ~~~~vvgNLPYnIss~Il~~ll~~  140 (284)
                      .....|+|||+.++..-|..++..
T Consensus         8 ~~tL~V~nlp~~~~e~~l~~~F~~   31 (83)
T 2aym_A            8 NQILFLTNLPEETNEMMLSMLFNQ   31 (83)
T ss_dssp             CSEEEEESCCTTCCHHHHHHHHTT
T ss_pred             CCEEEEECCCCCCCHHHHHHHHCC
T ss_conf             989999799998989999997324


No 415
>2e5g_A U6 snRNA-specific terminal uridylyltransferase 1; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=32.54  E-value=20  Score=15.35  Aligned_cols=23  Identities=13%  Similarity=0.278  Sum_probs=18.5

Q ss_pred             CEEEEECCCHHHHHHHHHHHHHH
Q ss_conf             20112023224678899999852
Q gi|254780398|r  118 PIRIIANLPYNIGTRLLFNWISA  140 (284)
Q Consensus       118 ~~~vvgNLPYnIss~Il~~ll~~  140 (284)
                      ....|||||++++..-|..++..
T Consensus         9 rtlfV~nl~~~~te~~l~~~F~~   31 (94)
T 2e5g_A            9 RSVFVSGFPRGVDSAQLSEYFLA   31 (94)
T ss_dssp             CEEEEECCCTTCCHHHHHHHGGG
T ss_pred             CEEEECCCCCCCCHHHHHHHHHC
T ss_conf             99999599986899999998521


No 416
>2cpd_A Apobec-1 stimulating protein; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=32.21  E-value=21  Score=15.30  Aligned_cols=23  Identities=13%  Similarity=0.135  Sum_probs=18.2

Q ss_pred             CEEEEECCCHHHHHHHHHHHHHH
Q ss_conf             20112023224678899999852
Q gi|254780398|r  118 PIRIIANLPYNIGTRLLFNWISA  140 (284)
Q Consensus       118 ~~~vvgNLPYnIss~Il~~ll~~  140 (284)
                      ....|+||||.++..=|..++..
T Consensus        16 ~~l~V~nLp~~~t~~~l~~~F~~   38 (99)
T 2cpd_A           16 KILYVRNLMLSTSEEMIEKEFNN   38 (99)
T ss_dssp             CEEEEESCCTTCCHHHHHHHHHT
T ss_pred             CEEEECCCCCCCCHHHHHHHHHC
T ss_conf             89998599987899999998716


No 417
>2kn4_A Immunoglobulin G-binding protein G, splicing FACT arginine/serine-rich 2, S35, splicing factor SC35,; RRM domain, cell WALL; NMR {Streptococcus SP}
Probab=32.19  E-value=13  Score=16.53  Aligned_cols=22  Identities=18%  Similarity=0.158  Sum_probs=18.2

Q ss_pred             EEEEECCCHHHHHHHHHHHHHH
Q ss_conf             0112023224678899999852
Q gi|254780398|r  119 IRIIANLPYNIGTRLLFNWISA  140 (284)
Q Consensus       119 ~~vvgNLPYnIss~Il~~ll~~  140 (284)
                      ...|+||||+++..-|..++..
T Consensus        72 ~l~V~nL~~~~te~~L~~~F~~   93 (158)
T 2kn4_A           72 SLKVDNLTYRTSPDTLRRVFEK   93 (158)
T ss_dssp             EEEEESCCTTCCHHHHHHHHHH
T ss_pred             EEEECCCCCCCCHHHHHHHHHH
T ss_conf             7999198998889999999871


No 418
>2jvo_A Nucleolar protein 3; nucleus, phosphorylation, ribonucleoprotein, ribosome biogenesis, RNA-binding, rRNA processing; NMR {Saccharomyces cerevisiae} PDB: 2osq_A
Probab=31.84  E-value=15  Score=16.16  Aligned_cols=22  Identities=9%  Similarity=0.161  Sum_probs=18.0

Q ss_pred             EEEEECCCHHHHHHHHHHHHHH
Q ss_conf             0112023224678899999852
Q gi|254780398|r  119 IRIIANLPYNIGTRLLFNWISA  140 (284)
Q Consensus       119 ~~vvgNLPYnIss~Il~~ll~~  140 (284)
                      ...|+||||++|-.-|..++..
T Consensus        33 ~l~V~nLp~~~t~~~l~~~F~~   54 (108)
T 2jvo_A           33 RLFVRPFPLDVQESELNEIFGP   54 (108)
T ss_dssp             EEEECSSCTTCCHHHHHHHHTT
T ss_pred             EEEEECCCCCCCHHHHHHHHHH
T ss_conf             9999699985899999999987


No 419
>3l9w_A Glutathione-regulated potassium-efflux system Pro linker, ancillary protein KEFF; potassium channel regulation, domains, antiport; HET: FMN AMP GSH; 1.75A {Escherichia coli} PDB: 3eyw_A* 3l9x_A*
Probab=31.79  E-value=24  Score=14.91  Aligned_cols=78  Identities=22%  Similarity=0.389  Sum_probs=43.1

Q ss_pred             CCCEEEEECCCC-CH-HHHHHHHCCCCEEEEECCCCCCHHHHHHHHHHHHCCCCCCHHHHCCCCHHHHCCCCCCEEEEEC
Q ss_conf             998799975898-82-3467750235259984255430368878753220012200000001431552133222011202
Q gi|254780398|r   47 DGITVIEIGAGP-GN-LTQMLLTLGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIAN  124 (284)
Q Consensus        47 ~~~~VlEIGpG~-G~-LT~~Ll~~~~~~v~aiEiD~~~~~~l~~~~~~~~~~~~ii~~Dal~~d~~~~~~~~~~~~vvgN  124 (284)
                      .+..|+=+|.|. |. +.+.|.+.+ ..+++||.|+..++.+++.     + +.++.||+.+-+.-.-.....--.||.-
T Consensus         3 hgmhVII~G~Gr~G~~va~~L~~~g-~~vvvID~d~~~v~~l~~~-----g-~~vi~GDat~~~~L~~Agi~~A~~vIia   75 (413)
T 3l9w_A            3 HGMRVIIAGFGRFGQITGRLLLSSG-VKMVVLDHDPDHIETLRKF-----G-MKVFYGDATRMDLLESAGAAKAEVLINA   75 (413)
T ss_dssp             -CCSEEEECCSHHHHHHHHHHHHTT-CCEEEEECCHHHHHHHHHT-----T-CCCEESCTTCHHHHHHTTTTTCSEEEEC
T ss_pred             CCCEEEEECCCHHHHHHHHHHHHCC-CCEEEEECCHHHHHHHHHC-----C-CCEEEECCCCHHHHHHCCCCCCCEEEEE
T ss_conf             8996999898889999999999689-9889998999999999977-----9-9099963899999985697759999997


Q ss_pred             CCHHHHH
Q ss_conf             3224678
Q gi|254780398|r  125 LPYNIGT  131 (284)
Q Consensus       125 LPYnIss  131 (284)
                      ++-.-.+
T Consensus        76 ~~d~~~n   82 (413)
T 3l9w_A           76 IDDPQTN   82 (413)
T ss_dssp             CSSHHHH
T ss_pred             ECCHHHH
T ss_conf             1988999


No 420
>3m1a_A Putative dehydrogenase; short, PSI, MCSG, structural genomics, midwest center for structural genomics, protein structure initiative; 2.00A {Streptomyces avermitilis}
Probab=31.71  E-value=24  Score=14.91  Aligned_cols=58  Identities=21%  Similarity=0.244  Sum_probs=40.1

Q ss_pred             CCCEEEEECCCCCH---HHHHHHHCCCCEEEEECCCCCCHHHHHHHHHHHHCCCCCCHHHHCCCC
Q ss_conf             99879997589882---346775023525998425543036887875322001220000000143
Q gi|254780398|r   47 DGITVIEIGAGPGN---LTQMLLTLGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVD  108 (284)
Q Consensus        47 ~~~~VlEIGpG~G~---LT~~Ll~~~~~~v~aiEiD~~~~~~l~~~~~~~~~~~~ii~~Dal~~d  108 (284)
                      .++.+|=-|++.|.   +.+.|++.++ +|++..++..-.+.+.+.   .++++..+.+|+.+.+
T Consensus         4 ~gKV~lITGas~GIG~aia~~la~~G~-~V~~~~r~~~~l~~~~~~---~~~~~~~~~~Dv~~~~   64 (281)
T 3m1a_A            4 SAKVWLVTGASSGFGRAIAEAAVAAGD-TVIGTARRTEALDDLVAA---YPDRAEAISLDVTDGE   64 (281)
T ss_dssp             CCCEEEETTTTSHHHHHHHHHHHHTTC-EEEEEESSGGGGHHHHHH---CTTTEEEEECCTTCHH
T ss_pred             CCCEEEEECCCCHHHHHHHHHHHHCCC-EEEEEECCHHHHHHHHHH---CCCCEEEEEEECCCHH
T ss_conf             998999908886999999999998799-999998999999999997---6895799997379999


No 421
>2dgu_A Heterogeneous nuclear ribonucleoprotein Q; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2dk2_A
Probab=31.49  E-value=20  Score=15.44  Aligned_cols=23  Identities=17%  Similarity=0.239  Sum_probs=18.7

Q ss_pred             CEEEEECCCHHHHHHHHHHHHHH
Q ss_conf             20112023224678899999852
Q gi|254780398|r  118 PIRIIANLPYNIGTRLLFNWISA  140 (284)
Q Consensus       118 ~~~vvgNLPYnIss~Il~~ll~~  140 (284)
                      ....|+|||+.++.+-|..++..
T Consensus        12 r~lfV~nlp~~~te~~L~~~F~~   34 (103)
T 2dgu_A           12 KVLFVRNLANTVTEEILEKAFSQ   34 (103)
T ss_dssp             CCEEEECCCTTCCHHHHHHHHHH
T ss_pred             CEEEECCCCCCCCHHHHHHHHHH
T ss_conf             48998399998899999999998


No 422
>1xdi_A RV3303C-LPDA; reductase, FAD, NAD, NADP, unknown function; HET: FAD; 2.81A {Mycobacterium tuberculosis} SCOP: c.3.1.5 d.87.1.1
Probab=31.45  E-value=21  Score=15.30  Aligned_cols=32  Identities=25%  Similarity=0.479  Sum_probs=20.2

Q ss_pred             CEEEEECCCCCHHHHHHHHC--CC--CEEEEECCCC
Q ss_conf             87999758988234677502--35--2599842554
Q gi|254780398|r   49 ITVIEIGAGPGNLTQMLLTL--GA--RKVIVIEKDQ   80 (284)
Q Consensus        49 ~~VlEIGpG~G~LT~~Ll~~--~~--~~v~aiEiD~   80 (284)
                      ..|+=||.|+|.++-++..+  +.  .+|+.||.|.
T Consensus         3 ~~vvIIGaGpAG~~aA~~aa~~~~~g~~V~liEk~~   38 (499)
T 1xdi_A            3 TRIVILGGGPAGYEAALVAATSHPETTQVTVIDCDG   38 (499)
T ss_dssp             EEEEEECCSHHHHHHHHHHHHHCTTTEEEEEEESSC
T ss_pred             CCEEEECCCHHHHHHHHHHHHCCCCCCEEEEEECCC
T ss_conf             869998788899999999985686889899994399


No 423
>2ad9_A Polypyrimidine tract-binding protein 1; RBD, RRM, protein-RNA complex, RNA binding protein/RNA complex; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=31.44  E-value=14  Score=16.47  Aligned_cols=24  Identities=17%  Similarity=0.167  Sum_probs=18.3

Q ss_pred             CCEEEEECCCHHHHHHHHHHHHHH
Q ss_conf             220112023224678899999852
Q gi|254780398|r  117 SPIRIIANLPYNIGTRLLFNWISA  140 (284)
Q Consensus       117 ~~~~vvgNLPYnIss~Il~~ll~~  140 (284)
                      .....|+|||++++-.-|..++..
T Consensus        31 s~~l~v~nLp~~~te~~L~~~F~~   54 (119)
T 2ad9_A           31 SRVIHIRKLPIDVTEGEVISLGLP   54 (119)
T ss_dssp             CSEEEEESCCTTCCHHHHHHHHTT
T ss_pred             CCEEEEECCCCCCCHHHHHHHHHH
T ss_conf             989999699999999999999987


No 424
>3afn_B A1-R, 4-deoxy-L-erythro-5-hexoseulose-uronic acid reductase; alpha/beta/alpha, rossmann-fold, oxidoreductase; HET: NAP; 1.63A {Sphingomonas SP} PDB: 3afm_A*
Probab=31.41  E-value=24  Score=14.87  Aligned_cols=62  Identities=16%  Similarity=0.175  Sum_probs=41.3

Q ss_pred             CCCCEEEEECCCCC---HHHHHHHHCCCCEEEEECCCCC-CHHHHHHHHHHHHCCCCCCHHHHCCCC
Q ss_conf             99987999758988---2346775023525998425543-036887875322001220000000143
Q gi|254780398|r   46 LDGITVIEIGAGPG---NLTQMLLTLGARKVIVIEKDQQ-FFPILKDISSQHPNRLEIIQDDALKVD  108 (284)
Q Consensus        46 ~~~~~VlEIGpG~G---~LT~~Ll~~~~~~v~aiEiD~~-~~~~l~~~~~~~~~~~~ii~~Dal~~d  108 (284)
                      .+++.+|=-|.+.|   ++.+.|++.++ +|+...++.. ..+.+.+.......+...+.+|..+.+
T Consensus         5 L~gK~alVTGas~GIG~aia~~la~~Ga-~V~i~~r~~~~~~~~~~~~~~~~g~~~~~~~~Dv~~~~   70 (258)
T 3afn_B            5 LKGKRVLITGSSQGIGLATARLFARAGA-KVGLHGRKAPANIDETIASMRADGGDAAFFAADLATSE   70 (258)
T ss_dssp             GTTCEEEETTCSSHHHHHHHHHHHHTTC-EEEEEESSCCTTHHHHHHHHHHTTCEEEEEECCTTSHH
T ss_pred             CCCCEEEEECCCCHHHHHHHHHHHHCCC-EEEEEECCCHHHHHHHHHHHHHCCCCEEEEECCCCCHH
T ss_conf             8998799937985999999999998799-99999798442199999999962996899981389999


No 425
>1sjq_A Polypyrimidine tract-binding protein 1; babbab motif, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=31.37  E-value=21  Score=15.31  Aligned_cols=24  Identities=17%  Similarity=0.167  Sum_probs=18.3

Q ss_pred             CCEEEEECCCHHHHHHHHHHHHHH
Q ss_conf             220112023224678899999852
Q gi|254780398|r  117 SPIRIIANLPYNIGTRLLFNWISA  140 (284)
Q Consensus       117 ~~~~vvgNLPYnIss~Il~~ll~~  140 (284)
                      +....|+|||+++|..-|..++..
T Consensus        16 S~~l~V~nLp~~~te~~L~~lF~~   39 (105)
T 1sjq_A           16 SRVIHIRKLPIDVTEGEVISLGLP   39 (105)
T ss_dssp             CCEEEECSCCTTSCHHHHHHHHHH
T ss_pred             CCEEEEECCCCCCCHHHHHHHHHC
T ss_conf             868999499999899999998635


No 426
>2dhx_A Poly (ADP-ribose) polymerase family, member 10 variant; RRM domain, RNA- binding, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=31.37  E-value=17  Score=15.80  Aligned_cols=49  Identities=18%  Similarity=0.122  Sum_probs=28.7

Q ss_pred             EEEEECCCHHHHHHHHHHHHHHHCCCCC---C------CHHHH-EEEHHHHHHHHHCCC
Q ss_conf             0112023224678899999852010000---0------01102-033447887530123
Q gi|254780398|r  119 IRIIANLPYNIGTRLLFNWISADTWPPF---W------ESLTL-LFQKEVGERITAQKN  167 (284)
Q Consensus       119 ~~vvgNLPYnIss~Il~~ll~~~~~~~~---~------~~~vl-mvQkEvA~Rl~a~pg  167 (284)
                      -..|+|||++++..-|..+.+.......   .      -.+.+ +--.|.|++.++..+
T Consensus        10 ~v~V~gLp~~~~~~~L~~~F~~~g~~~~g~v~~~~~~~g~gFV~F~~~~~a~~al~~~~   68 (104)
T 2dhx_A           10 AVEVRGLPPAVPDELLTLYFENRRRSGGGPVLSWQRLGCGGVLTFREPADAERVLAQAD   68 (104)
T ss_dssp             EEEEESCCTTSCHHHHHHHHHCTTTTCCCCEEEEEEETTEEEEEESSHHHHHHHHTCSC
T ss_pred             EEEEECCCCCCCHHHHHHHHHHCCCCCCEEEEEEEEECCCEEEEEECHHHHHHHHHCCC
T ss_conf             89996999978889999999853985526999977618858999927899999985599


No 427
>2f3j_A RNA and export factor binding protein 2; RRM domain, RBD domain., transport protein; NMR {Mus musculus}
Probab=31.30  E-value=15  Score=16.11  Aligned_cols=21  Identities=10%  Similarity=0.300  Sum_probs=17.7

Q ss_pred             EEEECCCHHHHHHHHHHHHHH
Q ss_conf             112023224678899999852
Q gi|254780398|r  120 RIIANLPYNIGTRLLFNWISA  140 (284)
Q Consensus       120 ~vvgNLPYnIss~Il~~ll~~  140 (284)
                      .+|+||||.+|.+-|..++..
T Consensus        91 l~V~NLp~~vte~dL~elF~~  111 (177)
T 2f3j_A           91 LLVSNLDFGVSDADIQELFAE  111 (177)
T ss_dssp             EEEECCCSCCCHHHHHHHHHH
T ss_pred             EEEECCCCCCCHHHHHHHHHH
T ss_conf             999899998889999999987


No 428
>2div_A TRNA selenocysteine associated protein; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=31.29  E-value=22  Score=15.20  Aligned_cols=24  Identities=4%  Similarity=0.001  Sum_probs=19.3

Q ss_pred             CEEEEECCCHHHHHHHHHHHHHHH
Q ss_conf             201120232246788999998520
Q gi|254780398|r  118 PIRIIANLPYNIGTRLLFNWISAD  141 (284)
Q Consensus       118 ~~~vvgNLPYnIss~Il~~ll~~~  141 (284)
                      ....|||||++++-.-|..++...
T Consensus        10 ~~lfVgnL~~~~te~~L~~~F~~~   33 (99)
T 2div_A           10 ASLWMGDLEPYMDENFISRAFATM   33 (99)
T ss_dssp             SEEEECSCCTTCCHHHHHHHHHHT
T ss_pred             CEEEEECCCCCCCHHHHHHHHHHC
T ss_conf             799997989968899999999647


No 429
>2dnm_A SRP46 splicing factor; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=31.13  E-value=17  Score=15.93  Aligned_cols=21  Identities=19%  Similarity=0.181  Sum_probs=17.8

Q ss_pred             EEEECCCHHHHHHHHHHHHHH
Q ss_conf             112023224678899999852
Q gi|254780398|r  120 RIIANLPYNIGTRLLFNWISA  140 (284)
Q Consensus       120 ~vvgNLPYnIss~Il~~ll~~  140 (284)
                      ..|+|||++++-.-|..++..
T Consensus        16 l~V~nLp~~~te~~l~~~F~~   36 (103)
T 2dnm_A           16 LKVDNLTYRTSPDSLRRVFEK   36 (103)
T ss_dssp             EEEESCCTTCCHHHHHHHHTT
T ss_pred             EEEECCCCCCCHHHHHHHHHH
T ss_conf             999398999999999999974


No 430
>3d2w_A TAR DNA-binding protein 43; DP-43 proteinopathy, TDP-43 inclusions, RNA recognition MOTI U, ALS, RRM; HET: DNA; 1.65A {Mus musculus}
Probab=31.12  E-value=17  Score=15.87  Aligned_cols=22  Identities=5%  Similarity=0.080  Sum_probs=18.2

Q ss_pred             EEEEECCCHHHHHHHHHHHHHH
Q ss_conf             0112023224678899999852
Q gi|254780398|r  119 IRIIANLPYNIGTRLLFNWISA  140 (284)
Q Consensus       119 ~~vvgNLPYnIss~Il~~ll~~  140 (284)
                      -..|||||+.+|..-|..++..
T Consensus        13 rlfV~nLp~~~te~~l~~~F~~   34 (89)
T 3d2w_A           13 KVFVGRCTEDMTAEELQQFFCQ   34 (89)
T ss_dssp             EEEEESCCTTCCHHHHHHHHTT
T ss_pred             EEEEECCCCCCCHHHHHHHHHH
T ss_conf             9999499998999999999850


No 431
>2cpe_A RNA-binding protein EWS; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=30.86  E-value=22  Score=15.13  Aligned_cols=24  Identities=8%  Similarity=0.095  Sum_probs=18.6

Q ss_pred             CCEEEEECCCHHHHHHHHHHHHHH
Q ss_conf             220112023224678899999852
Q gi|254780398|r  117 SPIRIIANLPYNIGTRLLFNWISA  140 (284)
Q Consensus       117 ~~~~vvgNLPYnIss~Il~~ll~~  140 (284)
                      .....|+||||+++-.=|..++..
T Consensus        15 ~~~v~V~nL~~~~te~dL~~~F~~   38 (113)
T 2cpe_A           15 NSAIYVQGLNDSVTLDDLADFFKQ   38 (113)
T ss_dssp             CCEEEEECCCTTCCHHHHHHHHTT
T ss_pred             CCEEEEECCCCCCCHHHHHHHHHH
T ss_conf             999999599998989999999987


No 432
>1bdb_A CIS-biphenyl-2,3-dihydrodiol-2,3-dehydrogenase; NAD-dependent oxidoreductase, short-chain alcohol dehydrogenase, PCB degradation; HET: NAD; 2.00A {Pseudomonas SP} SCOP: c.2.1.2
Probab=30.77  E-value=25  Score=14.81  Aligned_cols=59  Identities=27%  Similarity=0.420  Sum_probs=40.6

Q ss_pred             CCCCEEEEECCCCC---HHHHHHHHCCCCEEEEECCCCCCHHHHHHHHHHHHCCCCCCHHHHCCCC
Q ss_conf             99987999758988---2346775023525998425543036887875322001220000000143
Q gi|254780398|r   46 LDGITVIEIGAGPG---NLTQMLLTLGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVD  108 (284)
Q Consensus        46 ~~~~~VlEIGpG~G---~LT~~Ll~~~~~~v~aiEiD~~~~~~l~~~~~~~~~~~~ii~~Dal~~d  108 (284)
                      .+++.+|=.|.+.|   ++.+.|++.++ +|+++.++..-.+.+   ......++..+.+|+.+.+
T Consensus         3 L~gKvalITGas~GIG~aiA~~la~~Ga-~V~i~~r~~~~l~~~---~~~~g~~~~~~~~Dv~~~~   64 (277)
T 1bdb_A            3 LKGEAVLITGGASGLGRALVDRFVAEGA-KVAVLDKSAERLAEL---ETDHGDNVLGIVGDVRSLE   64 (277)
T ss_dssp             TTTCEEEEETTTSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHH---HHHHGGGEEEEECCTTCHH
T ss_pred             CCCCEEEEECCCCHHHHHHHHHHHHCCC-EEEEEECCHHHHHHH---HHHCCCCEEEEECCCCCHH
T ss_conf             8998999948787999999999998899-999997998999999---9975997799982379999


No 433
>2cq4_A RNA binding motif protein 23; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=30.69  E-value=15  Score=16.19  Aligned_cols=22  Identities=27%  Similarity=0.229  Sum_probs=17.9

Q ss_pred             EEEEECCCHHHHHHHHHHHHHH
Q ss_conf             0112023224678899999852
Q gi|254780398|r  119 IRIIANLPYNIGTRLLFNWISA  140 (284)
Q Consensus       119 ~~vvgNLPYnIss~Il~~ll~~  140 (284)
                      ...|+||||+++..=|..++..
T Consensus        27 tv~V~nLp~~~te~~l~~~F~~   48 (114)
T 2cq4_A           27 TVFCMQLAARIRPRDLEDFFSA   48 (114)
T ss_dssp             EEEEESCCTTCCHHHHHHHHTT
T ss_pred             EEEEECCCCCCCHHHHHHHHHH
T ss_conf             9999799997989999999971


No 434
>2ytc_A PRE-mRNA-splicing factor RBM22; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=30.68  E-value=14  Score=16.34  Aligned_cols=23  Identities=17%  Similarity=0.031  Sum_probs=18.4

Q ss_pred             CEEEEECCCHHHHHHHHHHHHHH
Q ss_conf             20112023224678899999852
Q gi|254780398|r  118 PIRIIANLPYNIGTRLLFNWISA  140 (284)
Q Consensus       118 ~~~vvgNLPYnIss~Il~~ll~~  140 (284)
                      ....|+|||++++..-|..++..
T Consensus        13 ~tl~V~nlp~~~t~~~l~~~F~~   35 (85)
T 2ytc_A           13 TTLYVGGLGDTITETDLRNHFYQ   35 (85)
T ss_dssp             CCEEEECCTTTSCHHHHHHHHHT
T ss_pred             CEEEEECCCCCCCHHHHHHHHHH
T ss_conf             99999699999999999999863


No 435
>2dgv_A HnRNP M, heterogeneous nuclear ribonucleoprotein M; RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} PDB: 2dh9_A
Probab=30.61  E-value=22  Score=15.13  Aligned_cols=22  Identities=18%  Similarity=0.382  Sum_probs=17.8

Q ss_pred             EEEEECCCHHHHHHHHHHHHHH
Q ss_conf             0112023224678899999852
Q gi|254780398|r  119 IRIIANLPYNIGTRLLFNWISA  140 (284)
Q Consensus       119 ~~vvgNLPYnIss~Il~~ll~~  140 (284)
                      ...|+|||++++..-|..++..
T Consensus        10 ~l~V~nLp~~~t~~~l~~~F~~   31 (92)
T 2dgv_A           10 QIFVRNLPFDFTWKMLKDKFNE   31 (92)
T ss_dssp             EEEECSCCTTCCHHHHHHHHHT
T ss_pred             EEEEECCCCCCCHHHHHHHHHH
T ss_conf             9999499986999999999997


No 436
>2cq3_A RNA-binding protein 9; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=30.40  E-value=18  Score=15.67  Aligned_cols=21  Identities=14%  Similarity=0.259  Sum_probs=17.7

Q ss_pred             EEEECCCHHHHHHHHHHHHHH
Q ss_conf             112023224678899999852
Q gi|254780398|r  120 RIIANLPYNIGTRLLFNWISA  140 (284)
Q Consensus       120 ~vvgNLPYnIss~Il~~ll~~  140 (284)
                      ..|+|||++++..-|..++..
T Consensus        18 l~V~nLp~~~t~~~l~~~f~~   38 (103)
T 2cq3_A           18 LHVSNIPFRFRDPDLRQMFGQ   38 (103)
T ss_dssp             EEEESCCTTCCHHHHHHHGGG
T ss_pred             EEEECCCCCCCHHHHHHHHHH
T ss_conf             999899998999999999987


No 437
>1k2w_A Sorbitol dehydrogenase; short-chain dehydrogenase, enzyme, oxidoreductase; 2.40A {Rhodobacter sphaeroides} SCOP: c.2.1.2
Probab=30.40  E-value=25  Score=14.77  Aligned_cols=59  Identities=19%  Similarity=0.205  Sum_probs=40.4

Q ss_pred             CCCCEEEEECCCCC---HHHHHHHHCCCCEEEEECCCCCCHHHHHHHHHHHHCCCCCCHHHHCCCC
Q ss_conf             99987999758988---2346775023525998425543036887875322001220000000143
Q gi|254780398|r   46 LDGITVIEIGAGPG---NLTQMLLTLGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVD  108 (284)
Q Consensus        46 ~~~~~VlEIGpG~G---~LT~~Ll~~~~~~v~aiEiD~~~~~~l~~~~~~~~~~~~ii~~Dal~~d  108 (284)
                      .+++.+|=.|.+.|   ++.+.|++.++ +|+...++..-.+.+.+   +...++..+.+|..+.+
T Consensus         3 L~gK~alVTGas~GIG~aia~~la~~Ga-~V~~~~r~~~~~~~~~~---~~~~~~~~~~~Dv~~~~   64 (256)
T 1k2w_A            3 LDGKTALITGSARGIGRAFAEAYVREGA-RVAIADINLEAARATAA---EIGPAACAIALDVTDQA   64 (256)
T ss_dssp             TTTEEEEEETCSSHHHHHHHHHHHHTTE-EEEEEESCHHHHHHHHH---HHCTTEEEEECCTTCHH
T ss_pred             CCCCEEEEECCCCHHHHHHHHHHHHCCC-EEEEEECCHHHHHHHHH---HHCCCEEEEEEECCCHH
T ss_conf             8999899938886899999999998799-89999798999999999---85895699997389999


No 438
>3c4a_A Probable tryptophan hydroxylase VIOD; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; HET: FAD; 2.30A {Chromobacterium violaceum atcc 12472}
Probab=30.39  E-value=25  Score=14.77  Aligned_cols=34  Identities=24%  Similarity=0.349  Sum_probs=24.3

Q ss_pred             EEEEECCCCCHHHHHH--HHCCC-CEEEEECCCCCCH
Q ss_conf             7999758988234677--50235-2599842554303
Q gi|254780398|r   50 TVIEIGAGPGNLTQML--LTLGA-RKVIVIEKDQQFF   83 (284)
Q Consensus        50 ~VlEIGpG~G~LT~~L--l~~~~-~~v~aiEiD~~~~   83 (284)
                      .|+=||.|++.||-++  .++.+ .+|+.+|.++...
T Consensus         2 kV~IvGaGpaGl~~A~~La~~~~G~~V~v~Er~~~~~   38 (381)
T 3c4a_A            2 KILVIGAGPAGLVFASQLKQARPLWAIDIVEKNDEQE   38 (381)
T ss_dssp             EEEEECCSHHHHHHHHHHHHHCTTSEEEEECSSCTTC
T ss_pred             EEEEECCCHHHHHHHHHHHHCCCCCCEEEEECCCCCC
T ss_conf             3799990889999999998569999589992799988


No 439
>2cqh_A IGF-II mRNA-binding protein 2 isoform A; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=30.39  E-value=16  Score=15.98  Aligned_cols=21  Identities=19%  Similarity=0.107  Sum_probs=17.7

Q ss_pred             EEEECCCHHHHHHHHHHHHHH
Q ss_conf             112023224678899999852
Q gi|254780398|r  120 RIIANLPYNIGTRLLFNWISA  140 (284)
Q Consensus       120 ~vvgNLPYnIss~Il~~ll~~  140 (284)
                      ..|+|||++++..-|..++..
T Consensus        11 l~V~nlp~~~te~~l~~~F~~   31 (93)
T 2cqh_A           11 LYIGNLSPAVTADDLRQLFGD   31 (93)
T ss_dssp             EEEECCCTTCCHHHHHHHHHH
T ss_pred             EEEECCCCCCCHHHHHHHHHH
T ss_conf             999488987879999998875


No 440
>3ex7_B RNA-binding protein 8A; protein-RNA complex, mRNA processing, mRNA splicing, mRNA transport, nonsense-mediated mRNA decay, nucleus; HET: ADP; 2.30A {Homo sapiens} PDB: 2j0q_D*
Probab=30.37  E-value=23  Score=15.05  Aligned_cols=23  Identities=4%  Similarity=-0.016  Sum_probs=18.8

Q ss_pred             CEEEEECCCHHHHHHHHHHHHHH
Q ss_conf             20112023224678899999852
Q gi|254780398|r  118 PIRIIANLPYNIGTRLLFNWISA  140 (284)
Q Consensus       118 ~~~vvgNLPYnIss~Il~~ll~~  140 (284)
                      ....|||||+.++-.-|..++..
T Consensus        23 ~~l~V~nLp~~~~e~~l~~~F~~   45 (126)
T 3ex7_B           23 WILFVTGVHEEATEEDIHDKFAE   45 (126)
T ss_dssp             EEEEEESCCTTCCHHHHHHHHHT
T ss_pred             CEEEECCCCCCCCHHHHHHHHHH
T ss_conf             88998889998889999999986


No 441
>1n4w_A CHOD, cholesterol oxidase; flavoenzyme, steroid metabolism, oxidoreductase, atomic resolution; HET: FAD; 0.92A {Streptomyces SP} SCOP: c.3.1.2 d.16.1.1 PDB: 1b4v_A* 1n1p_A* 1n4u_A* 1n4v_A* 1mxt_A* 2gew_A* 1b8s_A* 3gyi_A* 1cc2_A* 3gyj_A* 1ijh_A* 1cbo_A* 3b3r_A* 3b6d_A* 3cnj_A*
Probab=30.34  E-value=24  Score=14.90  Aligned_cols=31  Identities=26%  Similarity=0.435  Sum_probs=24.2

Q ss_pred             CEEEEECCCCCHHHHH--HHHCCCCEEEEECCCC
Q ss_conf             8799975898823467--7502352599842554
Q gi|254780398|r   49 ITVIEIGAGPGNLTQM--LLTLGARKVIVIEKDQ   80 (284)
Q Consensus        49 ~~VlEIGpG~G~LT~~--Ll~~~~~~v~aiEiD~   80 (284)
                      -.|+=||.|+|.++-+  |++.+ ++|..+|.-.
T Consensus         6 ~dvIVVGsG~aG~~~A~~La~~g-~~VLvlEaG~   38 (504)
T 1n4w_A            6 VPAVVIGTGYGAAVSALRLGEAG-VQTLMLEMGQ   38 (504)
T ss_dssp             EEEEEECCSHHHHHHHHHHHHTT-CCEEEEESSC
T ss_pred             CCEEEECCCHHHHHHHHHHHHCC-CEEEEEECCC
T ss_conf             95999796888999999998686-9499995789


No 442
>2do0_A HnRNP M, heterogeneous nuclear ribonucleoprotein M; RNA recognition motif, RRM, RNA binding domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=30.34  E-value=18  Score=15.76  Aligned_cols=22  Identities=32%  Similarity=0.424  Sum_probs=18.3

Q ss_pred             EEEEECCCHHHHHHHHHHHHHH
Q ss_conf             0112023224678899999852
Q gi|254780398|r  119 IRIIANLPYNIGTRLLFNWISA  140 (284)
Q Consensus       119 ~~vvgNLPYnIss~Il~~ll~~  140 (284)
                      ...|+|||++++..-|..++..
T Consensus        17 ~lfV~nLp~~~te~~L~~~F~~   38 (114)
T 2do0_A           17 TVFVANLDYKVGWKKLKEVFSM   38 (114)
T ss_dssp             CEEEESCCTTCCHHHHHHHHTT
T ss_pred             EEEECCCCCCCCHHHHHHHHHH
T ss_conf             9998089998899999999997


No 443
>2cpz_A CUG triplet repeat RNA-binding protein 1; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 2rq4_A 2rqc_A
Probab=30.32  E-value=16  Score=15.94  Aligned_cols=22  Identities=23%  Similarity=0.312  Sum_probs=18.0

Q ss_pred             EEEEECCCHHHHHHHHHHHHHH
Q ss_conf             0112023224678899999852
Q gi|254780398|r  119 IRIIANLPYNIGTRLLFNWISA  140 (284)
Q Consensus       119 ~~vvgNLPYnIss~Il~~ll~~  140 (284)
                      ...|+|||++++-.-|..++..
T Consensus        27 ~l~V~nLp~~~te~~l~~~F~~   48 (115)
T 2cpz_A           27 NLFIYHLPQEFGDQDLLQMFMP   48 (115)
T ss_dssp             CEEEESCCSSCCHHHHHHHHGG
T ss_pred             EEEEECCCCCCCHHHHHHHHHC
T ss_conf             9999399997989999999843


No 444
>1xkq_A Short-chain reductase family member (5D234); parrallel beta-sheet of seven strands in the order 3214567; HET: NDP; 2.10A {Caenorhabditis elegans} SCOP: c.2.1.2
Probab=30.30  E-value=26  Score=14.76  Aligned_cols=62  Identities=18%  Similarity=0.265  Sum_probs=43.4

Q ss_pred             CCCCEEEEECCCCC---HHHHHHHHCCCCEEEEECCCCCCHHHHHHHHHHH---HCCCCCCHHHHCCCC
Q ss_conf             99987999758988---2346775023525998425543036887875322---001220000000143
Q gi|254780398|r   46 LDGITVIEIGAGPG---NLTQMLLTLGARKVIVIEKDQQFFPILKDISSQH---PNRLEIIQDDALKVD  108 (284)
Q Consensus        46 ~~~~~VlEIGpG~G---~LT~~Ll~~~~~~v~aiEiD~~~~~~l~~~~~~~---~~~~~ii~~Dal~~d  108 (284)
                      .+++.+|=.|.+.|   ++.+.+++.++ +|+...+++.-.+.+.+.....   ..++..+.+|..+.+
T Consensus         4 L~gKvalITGas~GIG~aiA~~la~~Ga-~V~i~~r~~~~l~~~~~~l~~~~~~~~~~~~~~~Dv~~~~   71 (280)
T 1xkq_A            4 FSNKTVIITGSSNGIGRTTAILFAQEGA-NVTITGRSSERLEETRQIILKSGVSEKQVNSVVADVTTED   71 (280)
T ss_dssp             TTTCEEEETTCSSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHHHHTTTCCGGGEEEEECCTTSHH
T ss_pred             CCCCEEEEECCCCHHHHHHHHHHHHCCC-EEEEEECCHHHHHHHHHHHHHCCCCCCCEEEEEECCCCHH
T ss_conf             6998799937686999999999998799-8999989889999999999965888885799990289999


No 445
>2dgp_A Bruno-like 4, RNA binding protein; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2dgq_A
Probab=30.11  E-value=19  Score=15.63  Aligned_cols=21  Identities=19%  Similarity=0.290  Sum_probs=17.7

Q ss_pred             EEEECCCHHHHHHHHHHHHHH
Q ss_conf             112023224678899999852
Q gi|254780398|r  120 RIIANLPYNIGTRLLFNWISA  140 (284)
Q Consensus       120 ~vvgNLPYnIss~Il~~ll~~  140 (284)
                      ..|||||++++..-|..++..
T Consensus        16 lfV~nLp~~~~e~~l~~~F~~   36 (106)
T 2dgp_A           16 LFIGQIPRNLDEKDLKPLFEE   36 (106)
T ss_dssp             EEEESCCTTCCHHHHHHHHHH
T ss_pred             EEEECCCCCCCHHHHHHHHHH
T ss_conf             999799997999999999987


No 446
>1x4h_A RNA-binding protein 28; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=30.05  E-value=22  Score=15.20  Aligned_cols=23  Identities=17%  Similarity=0.192  Sum_probs=19.0

Q ss_pred             CEEEEECCCHHHHHHHHHHHHHH
Q ss_conf             20112023224678899999852
Q gi|254780398|r  118 PIRIIANLPYNIGTRLLFNWISA  140 (284)
Q Consensus       118 ~~~vvgNLPYnIss~Il~~ll~~  140 (284)
                      ....|+|||+.++-.-|..++..
T Consensus        16 ~tlfV~nLp~~~te~~l~~~F~~   38 (111)
T 1x4h_A           16 KTVFIRNLSFDSEEEALGEVLQQ   38 (111)
T ss_dssp             CCEEEESCCTTCCHHHHHHHHHT
T ss_pred             CEEEECCCCCCCCHHHHHHHHHH
T ss_conf             99998899997889999999998


No 447
>3fg2_P Putative rubredoxin reductase; ferredoxin reductase, RPA3782, FAD, flavoprotein, oxidoreductase; HET: FAD; 2.20A {Rhodopseudomonas palustris}
Probab=30.04  E-value=26  Score=14.73  Aligned_cols=35  Identities=31%  Similarity=0.264  Sum_probs=17.8

Q ss_pred             CCCEEEEECCCCCHHHHH--HHHCCCCEEEEECCCCCC
Q ss_conf             998799975898823467--750235259984255430
Q gi|254780398|r   47 DGITVIEIGAGPGNLTQM--LLTLGARKVIVIEKDQQF   82 (284)
Q Consensus        47 ~~~~VlEIGpG~G~LT~~--Ll~~~~~~v~aiEiD~~~   82 (284)
                      ....++=||.|...+..+  +...+ .+++.+|..++.
T Consensus       141 ~~~~vvvvGgG~~g~e~A~~l~~~g-~~vt~i~~~~~~  177 (404)
T 3fg2_P          141 DKKHVVVIGAGFIGLEFAATARAKG-LEVDVVELAPRV  177 (404)
T ss_dssp             GCSEEEEECCSHHHHHHHHHHHHTT-CEEEEECSSSST
T ss_pred             CCCEEEEECCCCHHHHHHHHHHHCC-CCEEEEECCCCC
T ss_conf             7978999888720357688887448-613799605433


No 448
>2e4g_A Tryptophan halogenase; flavin-binding, rebeccamycin biosynthesis, biosynthetic protein, flavoprotein; HET: TRP; 2.08A {Lechevalieria aerocolonigenes} PDB: 2o9z_A 2oa1_A* 2oal_A* 2oam_A
Probab=29.85  E-value=26  Score=14.71  Aligned_cols=34  Identities=12%  Similarity=0.249  Sum_probs=25.4

Q ss_pred             CCEEEEECCCC-CHHHHHHHHCC---CCEEEEECCCCC
Q ss_conf             98799975898-82346775023---525998425543
Q gi|254780398|r   48 GITVIEIGAGP-GNLTQMLLTLG---ARKVIVIEKDQQ   81 (284)
Q Consensus        48 ~~~VlEIGpG~-G~LT~~Ll~~~---~~~v~aiEiD~~   81 (284)
                      -+.|+=||.|+ |.+|-.+|.+.   -..|+.||.+..
T Consensus        25 i~kVvIVGgG~AG~~tAa~Lar~~~~~~~VtlIEs~~i   62 (550)
T 2e4g_A           25 IDKILIVGGGTAGWMAASYLGKALQGTADITLLQAPDI   62 (550)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHHHTTTSSEEEEEECCCC
T ss_pred             CCEEEEECCCHHHHHHHHHHHHHCCCCCEEEEEECCCC
T ss_conf             46799989878999999999986599987999979998


No 449
>2e5j_A Methenyltetrahydrofolate synthetase domain containing; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=29.75  E-value=25  Score=14.80  Aligned_cols=22  Identities=18%  Similarity=0.107  Sum_probs=17.6

Q ss_pred             EEEEECCCHHHHHHHHHHHHHH
Q ss_conf             0112023224678899999852
Q gi|254780398|r  119 IRIIANLPYNIGTRLLFNWISA  140 (284)
Q Consensus       119 ~~vvgNLPYnIss~Il~~ll~~  140 (284)
                      ...|||||++++..-|..++..
T Consensus        21 ~lfV~Nlp~~~~~~~L~~~F~~   42 (97)
T 2e5j_A           21 DVYVGNLPRDARVSDLKRALRE   42 (97)
T ss_dssp             EEEEECCCTTCCHHHHHHHHHH
T ss_pred             EEEEECCCCCCCHHHHHHHHHH
T ss_conf             8999695997989999999998


No 450
>2e44_A Insulin-like growth factor 2 mRNA binding protein 3; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=29.75  E-value=16  Score=15.95  Aligned_cols=23  Identities=17%  Similarity=0.125  Sum_probs=18.5

Q ss_pred             EEEEECCCHHHHHHHHHHHHHHH
Q ss_conf             01120232246788999998520
Q gi|254780398|r  119 IRIIANLPYNIGTRLLFNWISAD  141 (284)
Q Consensus       119 ~~vvgNLPYnIss~Il~~ll~~~  141 (284)
                      ...|+|||+.++..-|..++...
T Consensus        17 ~l~V~nLp~~~~~~~l~~lf~~~   39 (96)
T 2e44_A           17 KLQIRNIPPHLQWEVLDSLLVQY   39 (96)
T ss_dssp             CEEEEEECSSSCHHHHHHHHHHH
T ss_pred             EEEEECCCCCCCHHHHHHHHHHC
T ss_conf             99997989989999999999755


No 451
>2hvz_A Splicing factor, arginine/serine-rich 7; RRM, RNA binding protein; NMR {Homo sapiens}
Probab=29.72  E-value=18  Score=15.78  Aligned_cols=20  Identities=25%  Similarity=0.127  Sum_probs=16.9

Q ss_pred             EEECCCHHHHHHHHHHHHHH
Q ss_conf             12023224678899999852
Q gi|254780398|r  121 IIANLPYNIGTRLLFNWISA  140 (284)
Q Consensus       121 vvgNLPYnIss~Il~~ll~~  140 (284)
                      .|||||++++..-|..++..
T Consensus         4 fVgnL~~~~te~~L~~~F~~   23 (101)
T 2hvz_A            4 YVGNLGTGAGKGELERAFSY   23 (101)
T ss_dssp             EEECCCSSCSHHHHHHHHHH
T ss_pred             EEECCCCCCCHHHHHHHHHH
T ss_conf             99799987989999999731


No 452
>1fht_A U1A117, U1 small nuclear ribonucleoprotein A; RNP domain, spliceosome; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=29.70  E-value=11  Score=17.08  Aligned_cols=21  Identities=24%  Similarity=0.078  Sum_probs=15.6

Q ss_pred             CEEEEECCCHHHHHHHHHHHH
Q ss_conf             201120232246788999998
Q gi|254780398|r  118 PIRIIANLPYNIGTRLLFNWI  138 (284)
Q Consensus       118 ~~~vvgNLPYnIss~Il~~ll  138 (284)
                      ....|||||++++..-|..++
T Consensus         9 ~tl~V~nLp~~~te~~L~~~l   29 (116)
T 1fht_A            9 HTIYINNLNEKIKKDELKKSL   29 (116)
T ss_dssp             SEEEECCSCTTCCSSSHHHHH
T ss_pred             CEEEEECCCCCCCHHHHHHHH
T ss_conf             999995999999999999999


No 453
>2adc_A Polypyrimidine tract-binding protein 1; RBD, RRM, protein-RNA complex, RNA binding protein/RNA complex; NMR {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 2evz_A
Probab=29.63  E-value=26  Score=14.69  Aligned_cols=21  Identities=19%  Similarity=0.188  Sum_probs=12.3

Q ss_pred             EEEEECCCHHHHHHHHHHHHH
Q ss_conf             011202322467889999985
Q gi|254780398|r  119 IRIIANLPYNIGTRLLFNWIS  139 (284)
Q Consensus       119 ~~vvgNLPYnIss~Il~~ll~  139 (284)
                      ...|+||||.++..-|..++.
T Consensus       153 ~l~V~nlp~~~te~~l~~~F~  173 (229)
T 2adc_A          153 TLHLSNIPPSVSEEDLKVLFS  173 (229)
T ss_dssp             EEEEECCCTTCCHHHHHHHHH
T ss_pred             EEEEECCCCCCCHHHHHHHHC
T ss_conf             089956896444455520310


No 454
>3ksu_A 3-oxoacyl-acyl carrier protein reductase; structural genomics, PSI-2, dehydrogenase, protein structure initiative; 2.30A {Oenococcus oeni psu-1}
Probab=29.43  E-value=26  Score=14.67  Aligned_cols=62  Identities=11%  Similarity=0.100  Sum_probs=39.0

Q ss_pred             CCCCEEEEECCCCC---HHHHHHHHCCCCEEEEECCCCCC---HHHHHHHHHHHHCCCCCCHHHHCCCC
Q ss_conf             99987999758988---23467750235259984255430---36887875322001220000000143
Q gi|254780398|r   46 LDGITVIEIGAGPG---NLTQMLLTLGARKVIVIEKDQQF---FPILKDISSQHPNRLEIIQDDALKVD  108 (284)
Q Consensus        46 ~~~~~VlEIGpG~G---~LT~~Ll~~~~~~v~aiEiD~~~---~~~l~~~~~~~~~~~~ii~~Dal~~d  108 (284)
                      .+++.+|=-|.+.|   ++.+.|++.++ +|+...+..+-   ++.+.+.......++..+.+|+.+.+
T Consensus         9 L~gKvalITGas~GIG~aiA~~la~~Ga-~Vvi~~~~~~~~~~~~~~~~~i~~~g~~~~~~~~Dv~~~~   76 (262)
T 3ksu_A            9 LKNKVIVIAGGIKNLGALTAKTFALESV-NLVLHYHQAKDSDTANKLKDELEDQGAKVALYQSDLSNEE   76 (262)
T ss_dssp             CTTCEEEEETCSSHHHHHHHHHHTTSSC-EEEEEESCGGGHHHHHHHHHHHHTTTCEEEEEECCCCSHH
T ss_pred             CCCCEEEEECCCCHHHHHHHHHHHHCCC-EEEEECCCCCCHHHHHHHHHHHHHCCCEEEEEECCCCCHH
T ss_conf             9999899938987899999999998699-8999808867989999999999963983999976799999


No 455
>1x5t_A Splicing factor 3B subunit 4; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=29.40  E-value=26  Score=14.75  Aligned_cols=21  Identities=38%  Similarity=0.510  Sum_probs=17.7

Q ss_pred             EEEECCCHHHHHHHHHHHHHH
Q ss_conf             112023224678899999852
Q gi|254780398|r  120 RIIANLPYNIGTRLLFNWISA  140 (284)
Q Consensus       120 ~vvgNLPYnIss~Il~~ll~~  140 (284)
                      ..|||||+.++..-|..++..
T Consensus         8 lfV~nLp~~~te~~L~~~F~~   28 (96)
T 1x5t_A            8 IFIGNLDPEIDEKLLYDTFSA   28 (96)
T ss_dssp             EEEECCCTTCCHHHHHHHHHT
T ss_pred             EEEECCCCCCCHHHHHHHHHH
T ss_conf             999499985889999999852


No 456
>2weu_A Tryptophan 5-halogenase; regioselectivity, antifungal protein; HET: TRP; 1.70A {Streptomyces rugosporus} PDB: 2wet_A* 2wes_A*
Probab=29.37  E-value=22  Score=15.15  Aligned_cols=32  Identities=25%  Similarity=0.414  Sum_probs=21.7

Q ss_pred             CEEEEECCCC-CHHHHHHHHCC---CCEEEEECCCC
Q ss_conf             8799975898-82346775023---52599842554
Q gi|254780398|r   49 ITVIEIGAGP-GNLTQMLLTLG---ARKVIVIEKDQ   80 (284)
Q Consensus        49 ~~VlEIGpG~-G~LT~~Ll~~~---~~~v~aiEiD~   80 (284)
                      ..|+=||.|+ |.+|-.+|.+.   --.|+.||.+.
T Consensus         3 k~VvIvGgG~AG~~tAa~La~~~~~~~~VtliEs~~   38 (511)
T 2weu_A            3 RSVVIVGGGTAGWMTASYLKAAFDDRIDVTLVESGN   38 (511)
T ss_dssp             CEEEEECCHHHHHHHHHHHHHHHGGGSEEEEEEC--
T ss_pred             CEEEEECCCHHHHHHHHHHHHHCCCCCEEEEEECCC
T ss_conf             669998987899999999998658998799996899


No 457
>1s79_A Lupus LA protein; RRM, alpha/beta, RNA binding protein, translation; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=29.19  E-value=26  Score=14.71  Aligned_cols=24  Identities=13%  Similarity=0.263  Sum_probs=18.9

Q ss_pred             CEEEEECCCHHHHHHHHHHHHHHH
Q ss_conf             201120232246788999998520
Q gi|254780398|r  118 PIRIIANLPYNIGTRLLFNWISAD  141 (284)
Q Consensus       118 ~~~vvgNLPYnIss~Il~~ll~~~  141 (284)
                      ....|||||+++|..-|..++...
T Consensus        12 rtvyV~nlp~~~t~~~l~~~F~~~   35 (103)
T 1s79_A           12 RSVYIKGFPTDATLDDIKEWLEDK   35 (103)
T ss_dssp             GCEEEECCCTTCCHHHHHHHHHTS
T ss_pred             CEEEEECCCCCCCHHHHHHHHHHH
T ss_conf             889996989989999999999986


No 458
>2a3j_A U1 small nuclear ribonucleoprotein A; computationally designed protein, RRM, U1A, RNA binding protein; NMR {Homo sapiens}
Probab=28.76  E-value=19  Score=15.49  Aligned_cols=20  Identities=15%  Similarity=0.253  Sum_probs=15.3

Q ss_pred             EEEEECCCHHHHHHHHHHHH
Q ss_conf             01120232246788999998
Q gi|254780398|r  119 IRIIANLPYNIGTRLLFNWI  138 (284)
Q Consensus       119 ~~vvgNLPYnIss~Il~~ll  138 (284)
                      ...|||||++++..-|...+
T Consensus        31 ~l~V~NL~~~~te~dL~~~l   50 (127)
T 2a3j_A           31 VVLITNINPEVPKEKLQALL   50 (127)
T ss_dssp             EEEEESCCTTSCHHHHHHHH
T ss_pred             EEEEECCCCCCCHHHHHHHH
T ss_conf             89996999999999999999


No 459
>1wex_A Hypothetical protein (riken cDNA 2810036L13); structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.58.7.1
Probab=28.73  E-value=12  Score=16.74  Aligned_cols=25  Identities=16%  Similarity=0.119  Sum_probs=19.3

Q ss_pred             CCCEEEEECCCHHHHHHHHHHHHHH
Q ss_conf             2220112023224678899999852
Q gi|254780398|r  116 SSPIRIIANLPYNIGTRLLFNWISA  140 (284)
Q Consensus       116 ~~~~~vvgNLPYnIss~Il~~ll~~  140 (284)
                      ..+...|+|||+.++-.-|..++..
T Consensus        14 ~s~~l~v~nLp~~~te~dL~~lF~~   38 (104)
T 1wex_A           14 VSPVVHVRGLCESVVEADLVEALEK   38 (104)
T ss_dssp             CCSEEEEESCCSSCCHHHHHHHHTT
T ss_pred             CCCEEEEECCCCCCCHHHHHHHHHH
T ss_conf             9998999699999999999999998


No 460
>2err_A Ataxin-2-binding protein 1; protein-RNA complex, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=28.48  E-value=21  Score=15.34  Aligned_cols=22  Identities=14%  Similarity=0.211  Sum_probs=17.6

Q ss_pred             EEEEECCCHHHHHHHHHHHHHH
Q ss_conf             0112023224678899999852
Q gi|254780398|r  119 IRIIANLPYNIGTRLLFNWISA  140 (284)
Q Consensus       119 ~~vvgNLPYnIss~Il~~ll~~  140 (284)
                      ...|+|||++++.+-|..++..
T Consensus        31 ~l~V~nLp~~~te~~l~~~f~~   52 (109)
T 2err_A           31 RLHVSNIPFRFRDPDLRQMFGQ   52 (109)
T ss_dssp             EEEEESCCTTCCHHHHHHHGGG
T ss_pred             EEEEECCCCCCCHHHHHHHHHH
T ss_conf             8999798986999999999986


No 461
>3bs9_A Nucleolysin TIA-1 isoform P40; RNA recognition motif, RRM, RNA binding domain, RBD, RNA splicing, apoptosis, phosphoprotein, RNA-binding; 1.95A {Homo sapiens}
Probab=28.43  E-value=22  Score=15.15  Aligned_cols=21  Identities=14%  Similarity=0.154  Sum_probs=17.4

Q ss_pred             EEEECCCHHHHHHHHHHHHHH
Q ss_conf             112023224678899999852
Q gi|254780398|r  120 RIIANLPYNIGTRLLFNWISA  140 (284)
Q Consensus       120 ~vvgNLPYnIss~Il~~ll~~  140 (284)
                      ..|||||+.++..-|..+++.
T Consensus         9 lfV~nL~~~~te~~l~~~F~~   29 (87)
T 3bs9_A            9 VFVGDLSPEITTAAIAAAFAP   29 (87)
T ss_dssp             EEEESCCTTCCHHHHHHHHGG
T ss_pred             EEEECCCCCCCHHHHHHHHHH
T ss_conf             999699986979999999987


No 462
>2qa1_A PGAE, polyketide oxygenase PGAE; FAD, angucycline, aromatic hydroxylase, oxidoreductase; HET: FAD; 1.80A {Streptomyces SP}
Probab=28.41  E-value=25  Score=14.84  Aligned_cols=36  Identities=28%  Similarity=0.386  Sum_probs=26.4

Q ss_pred             CCCCEEEEECCCCCHHHHHH--HHCCCCEEEEECCCCCC
Q ss_conf             99987999758988234677--50235259984255430
Q gi|254780398|r   46 LDGITVIEIGAGPGNLTQML--LTLGARKVIVIEKDQQF   82 (284)
Q Consensus        46 ~~~~~VlEIGpG~G~LT~~L--l~~~~~~v~aiEiD~~~   82 (284)
                      ..+-.||=||.|+..||-++  .+.+. .|+.+|.++..
T Consensus         9 ~~d~dVlIVGaGpaGL~~A~~Lar~Gi-~v~ViEr~~~~   46 (500)
T 2qa1_A            9 RSDAAVIVVGAGPAGMMLAGELRLAGV-EVVVLERLVER   46 (500)
T ss_dssp             CSBCSEEEECCSHHHHHHHHHHHHTTC-CEEEEESCCC-
T ss_pred             CCCCCEEEECCCHHHHHHHHHHHHCCC-CEEEECCCCCC
T ss_conf             589998999919899999999987899-99998489998


No 463
>2fc9_A NCL protein; structure genomics, RRM_1 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=28.35  E-value=19  Score=15.55  Aligned_cols=23  Identities=22%  Similarity=0.302  Sum_probs=17.6

Q ss_pred             CCEEEEECCCHHHHHHHHHHHHH
Q ss_conf             22011202322467889999985
Q gi|254780398|r  117 SPIRIIANLPYNIGTRLLFNWIS  139 (284)
Q Consensus       117 ~~~~vvgNLPYnIss~Il~~ll~  139 (284)
                      .....|+|||++++..-|..++.
T Consensus        15 ~~tl~V~nLp~~~te~~l~~~F~   37 (101)
T 2fc9_A           15 SKTLVLSNLSYSATEETLQEVFE   37 (101)
T ss_dssp             CSEEEEESCCTTCCHHHHHHHCS
T ss_pred             CCEEEECCCCCCCCHHHHHHHHH
T ss_conf             99999838999898999999975


No 464
>2cph_A RNA binding motif protein 19; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=28.31  E-value=21  Score=15.31  Aligned_cols=22  Identities=18%  Similarity=0.394  Sum_probs=18.0

Q ss_pred             EEEEECCCHHHHHHHHHHHHHH
Q ss_conf             0112023224678899999852
Q gi|254780398|r  119 IRIIANLPYNIGTRLLFNWISA  140 (284)
Q Consensus       119 ~~vvgNLPYnIss~Il~~ll~~  140 (284)
                      ..+|+|||++++-.-|..++..
T Consensus        17 ~l~V~nLp~~~t~~~L~~~F~~   38 (107)
T 2cph_A           17 KILVRNIPFQANQREIRELFST   38 (107)
T ss_dssp             CEEEESCCTTCCHHHHHHHHHT
T ss_pred             EEEEECCCCCCCHHHHHHHHHH
T ss_conf             9999389998999999999987


No 465
>2hgl_A HNRPF protein, heterogeneous nuclear ribonucleoprotein F; RNA recognition motif, G-tract, G-quadruplex, alternative, splicing, RNA binding protein; NMR {Homo sapiens} PDB: 2kfy_A
Probab=28.29  E-value=17  Score=15.83  Aligned_cols=22  Identities=18%  Similarity=0.383  Sum_probs=17.0

Q ss_pred             EEEEECCCHHHHHHHHHHHHHH
Q ss_conf             0112023224678899999852
Q gi|254780398|r  119 IRIIANLPYNIGTRLLFNWISA  140 (284)
Q Consensus       119 ~~vvgNLPYnIss~Il~~ll~~  140 (284)
                      ...|+||||++|-.=|..++..
T Consensus        46 ~v~V~nLp~~~t~~dl~~~F~~   67 (136)
T 2hgl_A           46 VVKLRGLPWSCSVEDVQNFLSD   67 (136)
T ss_dssp             EEEEESCCTTCCHHHHHHHTTT
T ss_pred             EEEEECCCCCCCHHHHHHHHHC
T ss_conf             9999598975999999999742


No 466
>1wf0_A TDP-43, TAR DNA-binding protein-43; structural genomics, RRM domain, riken structural genomics/proteomics initiative RSGI, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=28.09  E-value=19  Score=15.49  Aligned_cols=23  Identities=9%  Similarity=0.033  Sum_probs=18.3

Q ss_pred             CEEEEECCCHHHHHHHHHHHHHH
Q ss_conf             20112023224678899999852
Q gi|254780398|r  118 PIRIIANLPYNIGTRLLFNWISA  140 (284)
Q Consensus       118 ~~~vvgNLPYnIss~Il~~ll~~  140 (284)
                      ....|||||++++..=|..++..
T Consensus         6 ~~lfVgnlp~~~te~dl~~~F~~   28 (88)
T 1wf0_A            6 SGVFVGRCTGDMTEDELREFFSQ   28 (88)
T ss_dssp             CEEEEESCCSSSCHHHHHHHSTT
T ss_pred             CEEEEECCCCCCCHHHHHHHHHH
T ss_conf             89999699999999999999998


No 467
>2hgn_A Heterogeneous nuclear ribonucleoprotein F; RNA recognition motif, G-tract, G-quadruplex, alternative splicing, RNA binding protein; NMR {Homo sapiens} PDB: 2kg1_A
Probab=28.04  E-value=19  Score=15.50  Aligned_cols=22  Identities=23%  Similarity=0.460  Sum_probs=18.0

Q ss_pred             EEEEECCCHHHHHHHHHHHHHH
Q ss_conf             0112023224678899999852
Q gi|254780398|r  119 IRIIANLPYNIGTRLLFNWISA  140 (284)
Q Consensus       119 ~~vvgNLPYnIss~Il~~ll~~  140 (284)
                      ...|+||||+.+..=|..++..
T Consensus        48 ~i~v~nLp~~~t~~dl~~~F~~   69 (139)
T 2hgn_A           48 CVHMRGLPYKATENDIYNFFSP   69 (139)
T ss_dssp             CEECCSCCTTCCHHHHHHHHCS
T ss_pred             EEEEECCCCCCCHHHHHHHHHC
T ss_conf             8998399998989999998726


No 468
>1x5o_A RNA binding motif, single-stranded interacting protein 1; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=27.95  E-value=14  Score=16.35  Aligned_cols=21  Identities=29%  Similarity=0.411  Sum_probs=17.5

Q ss_pred             EEEECCCHHHHHHHHHHHHHH
Q ss_conf             112023224678899999852
Q gi|254780398|r  120 RIIANLPYNIGTRLLFNWISA  140 (284)
Q Consensus       120 ~vvgNLPYnIss~Il~~ll~~  140 (284)
                      ..|+|||+.++..-|..++..
T Consensus        28 l~V~nLp~~~t~~~l~~~F~~   48 (114)
T 1x5o_A           28 LYISNLPLSMDEQELENMLKP   48 (114)
T ss_dssp             EEEESCCTTCCHHHHHHTTTT
T ss_pred             EEEECCCCCCCHHHHHHHHHH
T ss_conf             999599998999999999997


No 469
>2dng_A Eukaryotic translation initiation factor 4H; RRM domain, RBD, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=27.92  E-value=18  Score=15.77  Aligned_cols=22  Identities=18%  Similarity=0.215  Sum_probs=18.0

Q ss_pred             EEEEECCCHHHHHHHHHHHHHH
Q ss_conf             0112023224678899999852
Q gi|254780398|r  119 IRIIANLPYNIGTRLLFNWISA  140 (284)
Q Consensus       119 ~~vvgNLPYnIss~Il~~ll~~  140 (284)
                      ...|||||++++-.=|..++..
T Consensus        17 ~lfv~nLp~~~te~~l~~~F~~   38 (103)
T 2dng_A           17 TAYVGNLPFNTVQGDIDAIFKD   38 (103)
T ss_dssp             EEEEESCCTTCCHHHHHHHTTT
T ss_pred             EEEEECCCCCCCHHHHHHHHHH
T ss_conf             9999398985989999999860


No 470
>3o38_A Short chain dehydrogenase; tuberculosis, ortholog from A non-pathogenic dehydrogenase, structural genomics; 1.95A {Mycobacterium smegmatis}
Probab=27.91  E-value=28  Score=14.50  Aligned_cols=63  Identities=22%  Similarity=0.283  Sum_probs=42.3

Q ss_pred             CCCCCEEEEECC---CCCH-HHHHHHHCCCCEEEEECCCCCCHHHHHHHHHHH-HCCCCCCHHHHCCCC
Q ss_conf             899987999758---9882-346775023525998425543036887875322-001220000000143
Q gi|254780398|r   45 SLDGITVIEIGA---GPGN-LTQMLLTLGARKVIVIEKDQQFFPILKDISSQH-PNRLEIIQDDALKVD  108 (284)
Q Consensus        45 ~~~~~~VlEIGp---G~G~-LT~~Ll~~~~~~v~aiEiD~~~~~~l~~~~~~~-~~~~~ii~~Dal~~d  108 (284)
                      ..+++.+|=-|.   |.|. +.+.+++.++ +|+...++..-.+.+.+..... .+++..+.+|+.+.+
T Consensus        19 ~L~gKvalITGasg~GIG~aia~~la~~Ga-~V~i~~r~~~~l~~~~~~i~~~~~~~~~~~~~Dv~~~~   86 (266)
T 3o38_A           19 LLKGKVVLVTAAAGTGIGSTTARRALLEGA-DVVISDYHERRLGETRDQLADLGLGRVEAVVCDVTSTE   86 (266)
T ss_dssp             TTTTCEEEESSCSSSSHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHHHHTTCSSCEEEEECCTTCHH
T ss_pred             CCCCCEEEEECCCCCHHHHHHHHHHHHCCC-EEEEEECCHHHHHHHHHHHHHHCCCCEEEEECCCCCHH
T ss_conf             279997999499974899999999998799-89999798899999999998517984899991589999


No 471
>3dfz_A SIRC, precorrin-2 dehydrogenase; NAD dehydrogenase, cobalamin biosynthesis, NAD, oxidoreductase, porphyrin biosynthesis; 2.30A {Bacillus megaterium}
Probab=27.70  E-value=28  Score=14.48  Aligned_cols=60  Identities=18%  Similarity=0.302  Sum_probs=39.6

Q ss_pred             CCCCEEEEECCCCCHHH--HHHHHCCCCEEEEECCCCCCHHHHHHHHHHHHCCCCCCHHHHCCCCHH
Q ss_conf             99987999758988234--677502352599842554303688787532200122000000014315
Q gi|254780398|r   46 LDGITVIEIGAGPGNLT--QMLLTLGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFE  110 (284)
Q Consensus        46 ~~~~~VlEIGpG~G~LT--~~Ll~~~~~~v~aiEiD~~~~~~l~~~~~~~~~~~~ii~~Dal~~d~~  110 (284)
                      .++..||=||.|.=+..  +.|++.+|+ |+.|  .+.+.+.+.+....  ++++++..++-.-|+.
T Consensus        29 L~~k~VLVVGgG~vA~rKi~~Ll~~ga~-VtVi--sp~~~~el~~l~~~--~~i~~~~r~~~~~dl~   90 (223)
T 3dfz_A           29 LKGRSVLVVGGGTIATRRIKGFLQEGAA-ITVV--APTVSAEINEWEAK--GQLRVKRKKVGEEDLL   90 (223)
T ss_dssp             CTTCCEEEECCSHHHHHHHHHHGGGCCC-EEEE--CSSCCHHHHHHHHT--TSCEEECSCCCGGGSS
T ss_pred             CCCCEEEEECCCHHHHHHHHHHHHCCCE-EEEE--ECCCCHHHHHHHHC--CCCEEEECCCCHHHCC
T ss_conf             3998599989889999999999748997-9999--38899899999976--9969995688866718


No 472
>3nmr_A Cugbp ELAV-like family member 1; RRM, PRE-mRNA splicing, RNA binding protein-RNA complex; 1.85A {Homo sapiens} PDB: 3nna_A 3nnc_A 2dhs_A 3nnh_A
Probab=27.58  E-value=22  Score=15.19  Aligned_cols=23  Identities=9%  Similarity=-0.074  Sum_probs=16.5

Q ss_pred             CEEEEECCCHHHHHHHHHHHHHH
Q ss_conf             20112023224678899999852
Q gi|254780398|r  118 PIRIIANLPYNIGTRLLFNWISA  140 (284)
Q Consensus       118 ~~~vvgNLPYnIss~Il~~ll~~  140 (284)
                      ...+|+|||++++..-|..++..
T Consensus        96 ~~i~v~~l~~~~~~~~l~~~f~~  118 (175)
T 3nmr_A           96 RKLFIGMISKKCTENDIRVMFSS  118 (175)
T ss_dssp             SEEEEESCCTTCCHHHHHHHHGG
T ss_pred             CCCCCCCCCCCHHHHHHHHHHHH
T ss_conf             10001244433136789998762


No 473
>2a8x_A Dihydrolipoyl dehydrogenase, E3 component of alpha; lipoamide dehydrogenase, pyruvate dehydrogenase, alpha keto acid dehydrogenase; HET: FAD; 2.40A {Mycobacterium tuberculosis} PDB: 3ii4_A*
Probab=27.50  E-value=29  Score=14.46  Aligned_cols=13  Identities=46%  Similarity=0.958  Sum_probs=5.6

Q ss_pred             EEEECCCCCHHHH
Q ss_conf             9997589882346
Q gi|254780398|r   51 VIEIGAGPGNLTQ   63 (284)
Q Consensus        51 VlEIGpG~G~LT~   63 (284)
                      |+=||.|++.+|-
T Consensus         6 vvIIG~GpAG~~a   18 (464)
T 2a8x_A            6 VVVLGAGPGGYVA   18 (464)
T ss_dssp             EEEECCSHHHHHH
T ss_pred             EEEECCCHHHHHH
T ss_conf             8998989899999


No 474
>3cgv_A Geranylgeranyl reductase related protein; NP_393992.1, geranylgeranyl bacteriochlorophyll reductase- like FIXC homolog; HET: MSE FAD UNL; 1.60A {Thermoplasma acidophilum dsm 1728}
Probab=27.47  E-value=29  Score=14.45  Aligned_cols=32  Identities=34%  Similarity=0.604  Sum_probs=21.4

Q ss_pred             EEEEECCCCCHHHHHH--HHCCCCEEEEECCCCCC
Q ss_conf             7999758988234677--50235259984255430
Q gi|254780398|r   50 TVIEIGAGPGNLTQML--LTLGARKVIVIEKDQQF   82 (284)
Q Consensus        50 ~VlEIGpG~G~LT~~L--l~~~~~~v~aiEiD~~~   82 (284)
                      .|+=||+|+..||-++  ++.+. +|+.+|..+..
T Consensus         6 DV~IVGaGpaGl~~A~~La~~G~-~V~viEr~~~~   39 (397)
T 3cgv_A            6 DVLVVGGGPGGSTAARYAAKYGL-KTLMIEKRPEI   39 (397)
T ss_dssp             EEEEECCSHHHHHHHHHHHHTTC-CEEEECSSSST
T ss_pred             CEEEECCCHHHHHHHHHHHHCCC-CEEEECCCCCC
T ss_conf             88999948999999999997899-68999179988


No 475
>2cuy_A Malonyl COA-[acyl carrier protein] transacylase; transferase, structural genomics, NPPSFA; 2.10A {Thermus thermophilus HB8}
Probab=27.42  E-value=29  Score=14.45  Aligned_cols=12  Identities=25%  Similarity=0.354  Sum_probs=7.2

Q ss_pred             ECCCCCHHHHHH
Q ss_conf             758988234677
Q gi|254780398|r   54 IGAGPGNLTQML   65 (284)
Q Consensus        54 IGpG~G~LT~~L   65 (284)
                      +|--.|-+|-..
T Consensus        86 ~GhSlGE~aA~~   97 (305)
T 2cuy_A           86 AGHSLGEWTAHV   97 (305)
T ss_dssp             EESTHHHHHHHH
T ss_pred             CCCCCCHHHHHH
T ss_conf             788866899999


No 476
>1whw_A Hypothetical protein riken cDNA 1200009A02; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1
Probab=27.35  E-value=22  Score=15.14  Aligned_cols=21  Identities=29%  Similarity=0.295  Sum_probs=17.5

Q ss_pred             EEEECCCHHHHHHHHHHHHHH
Q ss_conf             112023224678899999852
Q gi|254780398|r  120 RIIANLPYNIGTRLLFNWISA  140 (284)
Q Consensus       120 ~vvgNLPYnIss~Il~~ll~~  140 (284)
                      ..|+|||++++-.-|..++..
T Consensus        11 lfV~nL~~~~te~~l~~~F~~   31 (99)
T 1whw_A           11 LFVRNLSYTSSEEDLEKLFSA   31 (99)
T ss_dssp             EEEECCCTTCCHHHHHHHHHT
T ss_pred             EEEECCCCCCCHHHHHHHHHH
T ss_conf             999798998999999999997


No 477
>2dnp_A RNA-binding protein 14; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=27.29  E-value=22  Score=15.14  Aligned_cols=22  Identities=9%  Similarity=0.078  Sum_probs=17.9

Q ss_pred             EEEECCCHHHHHHHHHHHHHHH
Q ss_conf             1120232246788999998520
Q gi|254780398|r  120 RIIANLPYNIGTRLLFNWISAD  141 (284)
Q Consensus       120 ~vvgNLPYnIss~Il~~ll~~~  141 (284)
                      ..|||||++++..-|..++...
T Consensus        12 lfV~nl~~~~te~~L~~~F~~~   33 (90)
T 2dnp_A           12 IFVGNVSAACTSQELRSLFERR   33 (90)
T ss_dssp             EEEESCCTTCCHHHHHHHHHHH
T ss_pred             EEEECCCCCCCHHHHHHHHHHH
T ss_conf             9997999759999999999844


No 478
>1kyq_A Met8P, siroheme biosynthesis protein Met8; homodimer, oxidoreductase, lyase; HET: NAD; 2.20A {Saccharomyces cerevisiae} SCOP: c.2.1.11 e.37.1.1
Probab=27.18  E-value=29  Score=14.42  Aligned_cols=42  Identities=21%  Similarity=0.431  Sum_probs=29.3

Q ss_pred             CCCCEEEEECCCCCHHHH--HHHHCCCC-EEEEECCCCCCHHHHH
Q ss_conf             999879997589882346--77502352-5998425543036887
Q gi|254780398|r   46 LDGITVIEIGAGPGNLTQ--MLLTLGAR-KVIVIEKDQQFFPILK   87 (284)
Q Consensus        46 ~~~~~VlEIGpG~G~LT~--~Ll~~~~~-~v~aiEiD~~~~~~l~   87 (284)
                      ..+..||=||.|.-+..+  .|++.+|+ .|++=|+++.+.....
T Consensus        11 l~~k~vLVVGgG~VA~rK~~~LL~agA~vtVVsp~~~~el~~l~~   55 (274)
T 1kyq_A           11 LKDKRILLIGGGEVGLTRLYKLMPTGCKLTLVSPDLHKSIIPKFG   55 (274)
T ss_dssp             CTTCEEEEEEESHHHHHHHHHHGGGTCEEEEEEEEECTTHHHHHC
T ss_pred             ECCCEEEEECCCHHHHHHHHHHHHCCCEEEEEECCCCHHHHHHHH
T ss_conf             289869998998999999999996899699992998889999875


No 479
>2dnz_A Probable RNA-binding protein 23; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=26.81  E-value=28  Score=14.48  Aligned_cols=21  Identities=19%  Similarity=0.313  Sum_probs=17.5

Q ss_pred             EEEECCCHHHHHHHHHHHHHH
Q ss_conf             112023224678899999852
Q gi|254780398|r  120 RIIANLPYNIGTRLLFNWISA  140 (284)
Q Consensus       120 ~vvgNLPYnIss~Il~~ll~~  140 (284)
                      ..|||||++++-.-|..++..
T Consensus         8 lfV~nLp~~~te~~l~~~f~~   28 (95)
T 2dnz_A            8 LYVGSLHFNITEDMLRGIFEP   28 (95)
T ss_dssp             EEEESCCTTCCHHHHHHHHTT
T ss_pred             EEEECCCCCCCHHHHHHHHHH
T ss_conf             999299996889999999997


No 480
>1oo0_B CG8781-PA, drosophila Y14; RNA recognition motif, splicing, protein complex, EXON junction complex, signaling protein; 1.85A {Drosophila melanogaster} SCOP: d.58.7.1 PDB: 2hyi_B* 2j0s_D* 2xb2_D*
Probab=26.75  E-value=29  Score=14.37  Aligned_cols=22  Identities=5%  Similarity=0.013  Sum_probs=18.2

Q ss_pred             EEEEECCCHHHHHHHHHHHHHH
Q ss_conf             0112023224678899999852
Q gi|254780398|r  119 IRIIANLPYNIGTRLLFNWISA  140 (284)
Q Consensus       119 ~~vvgNLPYnIss~Il~~ll~~  140 (284)
                      ...|||||++++..=|..++..
T Consensus        28 ~l~V~nlp~~~~e~~l~~~f~~   49 (110)
T 1oo0_B           28 ILFVTSIHEEAQEDEIQEKFCD   49 (110)
T ss_dssp             EEEEESCCTTCCHHHHHHHHGG
T ss_pred             EEEECCCCCCCCHHHHHHHHHH
T ss_conf             9999179998999999999973


No 481
>1fxl_A Paraneoplastic encephalomyelitis antigen HUD; protein-RNA complex, AU-rich element, transcription/RNA complex; 1.80A {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 1g2e_A 1fnx_H 1d8z_A 1d9a_A 3hi9_A
Probab=26.73  E-value=23  Score=15.03  Aligned_cols=21  Identities=19%  Similarity=0.257  Sum_probs=16.0

Q ss_pred             EEEECCCHHHHHHHHHHHHHH
Q ss_conf             112023224678899999852
Q gi|254780398|r  120 RIIANLPYNIGTRLLFNWISA  140 (284)
Q Consensus       120 ~vvgNLPYnIss~Il~~ll~~  140 (284)
                      .+|+|||++++-.-|..++..
T Consensus        91 i~v~nl~~~~~~~~i~~~f~~  111 (167)
T 1fxl_A           91 LYVSGLPKTMTQKELEQLFSQ  111 (167)
T ss_dssp             EEEESCCTTCCHHHHHHHHGG
T ss_pred             EEEECCCCCCCHHHHHHHHHH
T ss_conf             999477787999999999987


No 482
>2qfj_A FBP-interacting repressor; protein-DNA complex; HET: DNA; 2.10A {Homo sapiens} PDB: 2kxf_A 2kxh_A
Probab=26.73  E-value=23  Score=15.02  Aligned_cols=21  Identities=10%  Similarity=0.078  Sum_probs=16.4

Q ss_pred             EEEECCCHHHHHHHHHHHHHH
Q ss_conf             112023224678899999852
Q gi|254780398|r  120 RIIANLPYNIGTRLLFNWISA  140 (284)
Q Consensus       120 ~vvgNLPYnIss~Il~~ll~~  140 (284)
                      .+|+|||+.+|..-|..+++.
T Consensus       128 l~V~nLp~~~t~~~l~~~f~~  148 (216)
T 2qfj_A          128 IYVASVHQDLSDDDIKSVFEA  148 (216)
T ss_dssp             EEEECCCTTCCHHHHHHHHTT
T ss_pred             EEEECCCCCCHHHHHHHHHCC
T ss_conf             999368666407778666403


No 483
>1wi8_A EIF-4B, eukaryotic translation initiation factor 4B; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=26.63  E-value=17  Score=15.79  Aligned_cols=22  Identities=18%  Similarity=0.516  Sum_probs=18.2

Q ss_pred             EEEEECCCHHHHHHHHHHHHHH
Q ss_conf             0112023224678899999852
Q gi|254780398|r  119 IRIIANLPYNIGTRLLFNWISA  140 (284)
Q Consensus       119 ~~vvgNLPYnIss~Il~~ll~~  140 (284)
                      ...|+||||.++-.-|..++..
T Consensus        17 tv~V~nlp~~~te~~l~~~F~~   38 (104)
T 1wi8_A           17 TAFLGNLPYDVTEESIKEFFRG   38 (104)
T ss_dssp             EEEEESCCSSCCHHHHHHHTTT
T ss_pred             EEEEECCCCCCCHHHHHHHHHH
T ss_conf             8999199986879999999997


No 484
>3grk_A Enoyl-(acyl-carrier-protein) reductase (NADH); ssgcid, niaid, structural genomics, seattle structural genomics center for infectious disease; 2.35A {Brucella melitensis}
Probab=26.59  E-value=30  Score=14.35  Aligned_cols=63  Identities=13%  Similarity=0.158  Sum_probs=42.1

Q ss_pred             CCCCCCCEEEEECC----CCC-HHHHHHHHCCCCEEEEECCCCCCHHHHHHHHHHHHCCCCCCHHHHCCC
Q ss_conf             19899987999758----988-234677502352599842554303688787532200122000000014
Q gi|254780398|r   43 SGSLDGITVIEIGA----GPG-NLTQMLLTLGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKV  107 (284)
Q Consensus        43 ~~~~~~~~VlEIGp----G~G-~LT~~Ll~~~~~~v~aiEiD~~~~~~l~~~~~~~~~~~~ii~~Dal~~  107 (284)
                      .+..+++.+|=-|.    |.| ++.+.|++.++ +|+...+++...+.+++..... ++...+.+|..+-
T Consensus        26 ~g~L~GK~alITGass~~GIG~aiA~~la~~Ga-~Vvi~~r~~~~~~~~~~l~~~~-~~~~~~~~Dv~~~   93 (293)
T 3grk_A           26 SGLLQGKRGLILGVANNRSIAWGIAKAAREAGA-ELAFTYQGDALKKRVEPLAEEL-GAFVAGHCDVADA   93 (293)
T ss_dssp             -CTTTTCEEEEECCCSSSSHHHHHHHHHHHTTC-EEEEEECSHHHHHHHHHHHHHH-TCEEEEECCTTCH
T ss_pred             CCCCCCCEEEEECCCCCCHHHHHHHHHHHHCCC-EEEEEECCHHHHHHHHHHHHCC-CCEEEEECCCCCH
T ss_conf             877699879998999995599999999998699-9999838779999999998506-9559986576989


No 485
>1njr_A 32.1 kDa protein in ADH3-RCA1 intergenic region; structural genomics, dimer, two domain organization, PSI, protein structure initiative; HET: XYL; 1.90A {Saccharomyces cerevisiae} SCOP: c.50.1.2 PDB: 1txz_A* 1ty8_A*
Probab=26.50  E-value=24  Score=14.88  Aligned_cols=51  Identities=16%  Similarity=0.217  Sum_probs=33.6

Q ss_pred             CCHHHHHHHHCC--CCEEEEECCCCCCHHHHHHHHH----HHHCCCCCCHHHHCCCC
Q ss_conf             882346775023--5259984255430368878753----22001220000000143
Q gi|254780398|r   58 PGNLTQMLLTLG--ARKVIVIEKDQQFFPILKDISS----QHPNRLEIIQDDALKVD  108 (284)
Q Consensus        58 ~G~LT~~Ll~~~--~~~v~aiEiD~~~~~~l~~~~~----~~~~~~~ii~~Dal~~d  108 (284)
                      +|.|.+.-+--+  .-+++.++.|+.+++..++.+.    .....+++++|+++.+.
T Consensus         2 ~~~~~~~~~~~~~~~mkliL~d~n~~l~~aW~~~~~~~~~~~~~~v~i~~g~i~~~~   58 (284)
T 1njr_A            2 TGSLNRHSLLNGVKKMRIILCDTNEVVTNLWQESIPHAYIQNDKYLCIHHGHLQSLM   58 (284)
T ss_dssp             --------------CCEEEEEESCHHHHHHHHHHCC-------CCEEEEESCHHHHH
T ss_pred             CCCCHHHHHHCCHHHEEEEEECCCHHHHHHHHHHCCCCCCCCCCCEEEEECCHHHHH
T ss_conf             874007777615111279998699899999998622001278986699957688877


No 486
>1wez_A HnRNP H', FTP-3, heterogeneous nuclear ribonucleoprotein H'; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=26.46  E-value=17  Score=15.88  Aligned_cols=24  Identities=21%  Similarity=0.405  Sum_probs=18.3

Q ss_pred             CCEEEEECCCHHHHHHHHHHHHHH
Q ss_conf             220112023224678899999852
Q gi|254780398|r  117 SPIRIIANLPYNIGTRLLFNWISA  140 (284)
Q Consensus       117 ~~~~vvgNLPYnIss~Il~~ll~~  140 (284)
                      .-...|+||||+++-.=|..++..
T Consensus        15 g~~v~v~nLP~~~teedl~~~F~~   38 (102)
T 1wez_A           15 GHCVHMRGLPYRATENDIYNFFSP   38 (102)
T ss_dssp             SCEEEEESCCTTCCHHHHHHSSCS
T ss_pred             CCEEEEECCCCCCCHHHHHHHHHC
T ss_conf             738998498998989999998506


No 487
>2jhf_A Alcohol dehydrogenase E chain; oxidoreductase, metal coordination, NAD, zinc, inhibition, acetylation, metal-binding; HET: NAD; 1.0A {Equus caballus} SCOP: b.35.1.2 c.2.1.1 PDB: 1adc_A* 1adf_A* 1adg_A* 1adb_A* 1bto_A* 1heu_A* 1hf3_A* 1hld_A* 1lde_A* 1ldy_A* 1mg0_A* 1n92_A* 1p1r_A* 1ye3_A 1het_A* 2jhg_A* 2ohx_A* 2oxi_A* 3bto_A* 5adh_A* ...
Probab=26.18  E-value=30  Score=14.31  Aligned_cols=53  Identities=21%  Similarity=0.278  Sum_probs=36.6

Q ss_pred             HHHHHHCCCCCCCEEEEECCCCCHHH-HHHHH-CCCCEEEEECCCCCCHHHHHHH
Q ss_conf             99999719899987999758988234-67750-2352599842554303688787
Q gi|254780398|r   37 KKIAESSGSLDGITVIEIGAGPGNLT-QMLLT-LGARKVIVIEKDQQFFPILKDI   89 (284)
Q Consensus        37 ~~iv~~~~~~~~~~VlEIGpG~G~LT-~~Ll~-~~~~~v~aiEiD~~~~~~l~~~   89 (284)
                      ....+.+++.++++|+=+|+|...+. -.+++ .++.+|++++.++.-.+.+++.
T Consensus       181 ~~~~~~~~~~~g~~VlV~GaG~~g~~a~~~ak~~g~~~Vi~~~~~~~~~~~~~~~  235 (374)
T 2jhf_A          181 GSAVKVAKVTQGSTCAVFGLGGVGLSVIMGCKAAGAARIIGVDINKDKFAKAKEV  235 (374)
T ss_dssp             HHHHTTTCCCTTCEEEEECCSHHHHHHHHHHHHTTCSEEEEECSCGGGHHHHHHT
T ss_pred             HHHHHHCCCCCCCEEEEECCCHHHHHHHHHHHHCCCCEEEEEECCHHHHHHHHHC
T ss_conf             8899851899999899989977899999999980998799996888999999974


No 488
>1ebd_A E3BD, dihydrolipoamide dehydrogenase; redox-active center, glycolysis, oxidoreductase; HET: FAD; 2.60A {Geobacillus stearothermophilus} SCOP: c.3.1.5 c.3.1.5 d.87.1.1
Probab=26.15  E-value=30  Score=14.30  Aligned_cols=28  Identities=39%  Similarity=0.687  Sum_probs=10.3

Q ss_pred             EEEECCCCCHHH--HHHHHCCCCEEEEECCC
Q ss_conf             999758988234--67750235259984255
Q gi|254780398|r   51 VIEIGAGPGNLT--QMLLTLGARKVIVIEKD   79 (284)
Q Consensus        51 VlEIGpG~G~LT--~~Ll~~~~~~v~aiEiD   79 (284)
                      |+=||.|++.+|  ..+.+.+. +|+.||.+
T Consensus         6 viIIG~GpAG~~aA~~l~~~g~-~V~liEk~   35 (455)
T 1ebd_A            6 TLVVGAGPGGYVAAIRAAQLGQ-KVTIVEKG   35 (455)
T ss_dssp             EEEECCSHHHHHHHHHHHHTTC-CEEEEESS
T ss_pred             EEEECCCHHHHHHHHHHHHCCC-CEEEEECC
T ss_conf             9998888899999999985979-19999369


No 489
>1fjc_A Nucleolin RBD2, protein C23; RNP, RRM, RNA binding domain, nucleolus, structural protein; NMR {Mesocricetus auratus} SCOP: d.58.7.1
Probab=26.02  E-value=25  Score=14.83  Aligned_cols=24  Identities=21%  Similarity=0.220  Sum_probs=18.5

Q ss_pred             CCEEEEECCCHHHHHHHHHHHHHH
Q ss_conf             220112023224678899999852
Q gi|254780398|r  117 SPIRIIANLPYNIGTRLLFNWISA  140 (284)
Q Consensus       117 ~~~~vvgNLPYnIss~Il~~ll~~  140 (284)
                      ....+|+|||++++-.=|..++..
T Consensus        16 ~~tl~V~nLp~~~t~~~l~~~F~~   39 (96)
T 1fjc_A           16 ARTLLAKNLSFNITEDELKEVFED   39 (96)
T ss_dssp             GGEEEEESCCSSCCHHHHHHHHCS
T ss_pred             CCEEEECCCCCCCCHHHHHHHHHH
T ss_conf             999998289998999999999986


No 490
>3cw1_K U1 small nuclear ribonucleoprotein 70 kDa; PRE-mRNA splicing, spliceosome, RNA-binding domain, SM fold, zinc finger, RNA recognition motif; 5.49A {Homo sapiens}
Probab=25.97  E-value=23  Score=15.04  Aligned_cols=22  Identities=14%  Similarity=0.137  Sum_probs=18.1

Q ss_pred             EEEEECCCHHHHHHHHHHHHHH
Q ss_conf             0112023224678899999852
Q gi|254780398|r  119 IRIIANLPYNIGTRLLFNWISA  140 (284)
Q Consensus       119 ~~vvgNLPYnIss~Il~~ll~~  140 (284)
                      ..+||||||+++-.-|..++..
T Consensus       104 ~lfV~nl~~~~te~~l~~~F~~  125 (216)
T 3cw1_K          104 TLFVARVNYDTTESKLRREFEV  125 (216)
T ss_pred             EEEECCCCCCCCHHHHHHHHHH
T ss_conf             8998089987889999999985


No 491
>2xnq_A Nuclear polyadenylated RNA-binding protein 3; transcription termination, RNA processi recognition, RRM; HET: CAF; 1.30A {Saccharomyces cerevisiae} PDB: 2xnr_A
Probab=25.93  E-value=23  Score=14.99  Aligned_cols=21  Identities=38%  Similarity=0.564  Sum_probs=16.3

Q ss_pred             EEEECCCH-HHHHHHHHHHHHH
Q ss_conf             11202322-4678899999852
Q gi|254780398|r  120 RIIANLPY-NIGTRLLFNWISA  140 (284)
Q Consensus       120 ~vvgNLPY-nIss~Il~~ll~~  140 (284)
                      ..|||||+ +++..-|..++..
T Consensus        25 l~V~nLp~~~~te~dL~~~F~~   46 (97)
T 2xnq_A           25 LFIGNLPLKNVSKEDLFRIFSP   46 (97)
T ss_dssp             EEEESCCSSCCCHHHHHHHHGG
T ss_pred             EEEECCCCCCCCHHHHHHHHHH
T ss_conf             9996999898999999999885


No 492
>2jrs_A RNA-binding protein 39; RNA binding motif of RBM39_human (caper), RRM2 domain, solution structure, structural genomics, PSI-2; NMR {Homo sapiens}
Probab=25.92  E-value=21  Score=15.26  Aligned_cols=21  Identities=19%  Similarity=0.313  Sum_probs=17.4

Q ss_pred             EEEECCCHHHHHHHHHHHHHH
Q ss_conf             112023224678899999852
Q gi|254780398|r  120 RIIANLPYNIGTRLLFNWISA  140 (284)
Q Consensus       120 ~vvgNLPYnIss~Il~~ll~~  140 (284)
                      ..|||||+.++..-|..++..
T Consensus        29 lfV~nLp~~~~~~~L~~~F~~   49 (108)
T 2jrs_A           29 LYVGSLHFNITEDMLRGIFEP   49 (108)
T ss_dssp             EEEECCCSSCCHHHHHHHHTT
T ss_pred             EEEECCCCCCCHHHHHHHHHH
T ss_conf             999795997989999999987


No 493
>3n9u_C Cleavage and polyadenylation specificity factor S; protein-protein complex, coexpression, heterotetramer, mRNA maturation, mRNA cleavage; 1.92A {Homo sapiens}
Probab=25.89  E-value=24  Score=14.88  Aligned_cols=22  Identities=9%  Similarity=0.155  Sum_probs=17.4

Q ss_pred             EEEEECCCHHHHHHHHHHHHHH
Q ss_conf             0112023224678899999852
Q gi|254780398|r  119 IRIIANLPYNIGTRLLFNWISA  140 (284)
Q Consensus       119 ~~vvgNLPYnIss~Il~~ll~~  140 (284)
                      ..+||||||.++..-|..++..
T Consensus        57 ~i~VgnLp~~~te~~L~~~F~~   78 (156)
T 3n9u_C           57 AVYVGSFSWWTTDQQLIQVIRS   78 (156)
T ss_dssp             EEEEECCCTTCCHHHHHHHHHH
T ss_pred             EEEECCCCCCCCHHHHHHHHHH
T ss_conf             8998789996899999999975


No 494
>2qa2_A CABE, polyketide oxygenase CABE; FAD, angucycline, aromatic hydroxylase, oxidoreductase; HET: FAD; 2.70A {Streptomyces}
Probab=25.71  E-value=31  Score=14.25  Aligned_cols=35  Identities=34%  Similarity=0.406  Sum_probs=26.0

Q ss_pred             CCCEEEEECCCCCHHHHHH--HHCCCCEEEEECCCCCC
Q ss_conf             9987999758988234677--50235259984255430
Q gi|254780398|r   47 DGITVIEIGAGPGNLTQML--LTLGARKVIVIEKDQQF   82 (284)
Q Consensus        47 ~~~~VlEIGpG~G~LT~~L--l~~~~~~v~aiEiD~~~   82 (284)
                      .+-.|+=||.|+..||-++  .+.+. .|+.+|..+..
T Consensus        11 sD~DVlIVGaGpaGl~~A~~Lar~Gi-~v~viEr~~~~   47 (499)
T 2qa2_A           11 SDASVIVVGAGPAGLMLAGELRLGGV-DVMVLEQLPQR   47 (499)
T ss_dssp             CCEEEEEECCSHHHHHHHHHHHHTTC-CEEEEESCSSC
T ss_pred             CCCCEEEECCCHHHHHHHHHHHHCCC-CEEEEECCCCC
T ss_conf             89998999929899999999997899-99999289998


No 495
>1vl8_A Gluconate 5-dehydrogenase; TM0441, structural genomics, JCSG, protein structure initiative, PSI, joint center for structural genomics; HET: NAP; 2.07A {Thermotoga maritima MSB8} SCOP: c.2.1.2
Probab=25.62  E-value=31  Score=14.24  Aligned_cols=62  Identities=16%  Similarity=0.220  Sum_probs=41.7

Q ss_pred             CCCCEEEEECCCCC---HHHHHHHHCCCCEEEEECCCCCCHHH-HHHHHHHHHCCCCCCHHHHCCCC
Q ss_conf             99987999758988---23467750235259984255430368-87875322001220000000143
Q gi|254780398|r   46 LDGITVIEIGAGPG---NLTQMLLTLGARKVIVIEKDQQFFPI-LKDISSQHPNRLEIIQDDALKVD  108 (284)
Q Consensus        46 ~~~~~VlEIGpG~G---~LT~~Ll~~~~~~v~aiEiD~~~~~~-l~~~~~~~~~~~~ii~~Dal~~d  108 (284)
                      .+++.+|=-|.+.|   ++.+.+++.++ +|+.+.++..-.+. +++..+....++..+.+|+.+.+
T Consensus        19 L~gKvalITGas~GIG~aiA~~la~~Ga-~V~i~~r~~~~l~~~~~~l~~~~g~~~~~~~~Dv~~~~   84 (267)
T 1vl8_A           19 LRGRVALVTGGSRGLGFGIAQGLAEAGC-SVVVASRNLEEASEAAQKLTEKYGVETMAFRCDVSNYE   84 (267)
T ss_dssp             CTTCEEEEETTTSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHHHHHHHCCCEEEEECCTTCHH
T ss_pred             CCCCEEEEECCCCHHHHHHHHHHHHCCC-EEEEEECCHHHHHHHHHHHHHHHCCCEEEEEECCCCHH
T ss_conf             8999899948987899999999998799-89999798899999999999970995799993489999


No 496
>2dgs_A DAZ-associated protein 1; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=25.54  E-value=21  Score=15.35  Aligned_cols=21  Identities=19%  Similarity=0.374  Sum_probs=17.4

Q ss_pred             EEEECCCHHHHHHHHHHHHHH
Q ss_conf             112023224678899999852
Q gi|254780398|r  120 RIIANLPYNIGTRLLFNWISA  140 (284)
Q Consensus       120 ~vvgNLPYnIss~Il~~ll~~  140 (284)
                      ..|||||+.++-.-|..++..
T Consensus        13 lfV~nLp~~~te~~L~~~F~~   33 (99)
T 2dgs_A           13 IFVGGIPHNCGETELREYFKK   33 (99)
T ss_dssp             EEEESCCSSCCHHHHHHHHSS
T ss_pred             EEEECCCCCCCHHHHHHHHHH
T ss_conf             999699997999999999987


No 497
>2dis_A Unnamed protein product; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=25.38  E-value=26  Score=14.68  Aligned_cols=22  Identities=14%  Similarity=0.111  Sum_probs=18.0

Q ss_pred             EEEECCCHHHHHHHHHHHHHHH
Q ss_conf             1120232246788999998520
Q gi|254780398|r  120 RIIANLPYNIGTRLLFNWISAD  141 (284)
Q Consensus       120 ~vvgNLPYnIss~Il~~ll~~~  141 (284)
                      ..|||||++++-.-|..++...
T Consensus        11 LfV~nLp~~~te~~l~~~F~~~   32 (109)
T 2dis_A           11 LFIGGIPKMKKREEILEEIAKV   32 (109)
T ss_dssp             EEEECCCTTSCHHHHHHHHHHH
T ss_pred             EEEECCCCCCCHHHHHHHHHHH
T ss_conf             9997989868899999999972


No 498
>3kzv_A Uncharacterized oxidoreductase YIR035C; cytoplasmic protein, unknown function, structural genomics, PSI, MCSG; 2.00A {Saccharomyces cerevisiae}
Probab=25.17  E-value=31  Score=14.19  Aligned_cols=58  Identities=17%  Similarity=0.327  Sum_probs=33.5

Q ss_pred             CCEEEEECCCCC---HHHHHHHHCCCC-EEEEECCCCCCHHHHHHHHHHHHCCCCCCHHHHCCCC
Q ss_conf             987999758988---234677502352-5998425543036887875322001220000000143
Q gi|254780398|r   48 GITVIEIGAGPG---NLTQMLLTLGAR-KVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVD  108 (284)
Q Consensus        48 ~~~VlEIGpG~G---~LT~~Ll~~~~~-~v~aiEiD~~~~~~l~~~~~~~~~~~~ii~~Dal~~d  108 (284)
                      |+.+|=-|.+.|   ++.+.|++.+++ -++.+.+++.   .+++......+++..+.+|..+.+
T Consensus         2 GKv~lITGas~GIG~aia~~la~~Ga~v~v~~~~r~~~---~l~~l~~~~~~~~~~~~~Dvt~~~   63 (254)
T 3kzv_A            2 GKVILVTGVSRGIGKSIVDVLFSLDKDTVVYGVARSEA---PLKKLKEKYGDRFFYVVGDITEDS   63 (254)
T ss_dssp             CCEEEECSTTSHHHHHHHHHHHHHCSSCEEEEEESCHH---HHHHHHHHHGGGEEEEESCTTSHH
T ss_pred             CCEEEEECCCCHHHHHHHHHHHHCCCCEEEEECCCCHH---HHHHHHHHCCCCEEEEECCCCCHH
T ss_conf             99899947775999999999997799889997269999---999999970994799981289999


No 499
>3jsk_A Cypbp37 protein; octameric thiazole synthase, biosynthetic protein; HET: AHZ; 2.70A {Neurospora crassa}
Probab=24.96  E-value=16  Score=16.08  Aligned_cols=53  Identities=15%  Similarity=0.255  Sum_probs=0.0

Q ss_pred             CCCHHHHHHHHHHCCCCCCCEEEEECCCCCHHHHH--HHHCCCC-EEEEECCCCCC
Q ss_conf             23989999999971989998799975898823467--7502352-59984255430
Q gi|254780398|r   30 LLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQM--LLTLGAR-KVIVIEKDQQF   82 (284)
Q Consensus        30 L~d~~i~~~iv~~~~~~~~~~VlEIGpG~G~LT~~--Ll~~~~~-~v~aiEiD~~~   82 (284)
                      .+.+.+..+-........+..|+=||.|+..|+-+  |++..+. +|+.+|.+..+
T Consensus        61 ~i~~~~~~~~~~~~~~~~~~dv~vvg~g~~g~~~a~~~~~~~~g~~v~~~e~~~~~  116 (344)
T 3jsk_A           61 TVSRAMTRRYFADLDAHAETDIVIVGAGSCGLSAAYVLSTLRPDLRITIVEAGVAP  116 (344)
T ss_dssp             HHHHHHHHHHHHHHHHHHBCSEEEECCSHHHHHHHHHHHHHCTTSCEEEEESSSSC
T ss_pred             HHHHHHHHCCCCCCCCCCCCCEEEECCCHHHHHHHHHHHHHCCCCEEEEEECCCCC
T ss_conf             97999854412434301568989989778999999999974899869999488777


No 500
>3iwa_A FAD-dependent pyridine nucleotide-disulphide oxidoreductase; structural genomics, PSI-2, protein structure initiative; 2.30A {Desulfovibrio vulgaris DP4}
Probab=24.96  E-value=32  Score=14.17  Aligned_cols=34  Identities=21%  Similarity=0.217  Sum_probs=0.0

Q ss_pred             CEEEEECCCCCHHH--HHHHHCCCC-EEEEECCCCCC
Q ss_conf             87999758988234--677502352-59984255430
Q gi|254780398|r   49 ITVIEIGAGPGNLT--QMLLTLGAR-KVIVIEKDQQF   82 (284)
Q Consensus        49 ~~VlEIGpG~G~LT--~~Ll~~~~~-~v~aiEiD~~~   82 (284)
                      ..|+=||.|+|.+|  ..|.+.++. +|+.||.++.+
T Consensus         4 kkVvIIGgG~AGl~aA~~l~~~g~~~~Vtlie~~~~~   40 (472)
T 3iwa_A            4 KHVVVIGAVALGPKAACRFKRLDPEAHVTMIDQASRI   40 (472)
T ss_dssp             CEEEEECCSSHHHHHHHHHHHHCTTSEEEEECCC---
T ss_pred             CCEEEECCCHHHHHHHHHHHCCCCCCEEEEEECCCCC
T ss_conf             9899989889999999999717989819999389976


Done!