Query gi|254780398|ref|YP_003064811.1| dimethyladenosine transferase [Candidatus Liberibacter asiaticus str. psy62] Match_columns 284 No_of_seqs 140 out of 3131 Neff 6.6 Searched_HMMs 23785 Date Mon May 30 10:39:50 2011 Command /home/congqian_1/programs/hhpred/hhsearch -i 254780398.hhm -d /home/congqian_1/database/pdb/pdb70.hhm No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM 1 3gru_A Dimethyladenosine trans 100.0 0 0 535.1 19.5 253 16-279 19-288 (295) 2 3fut_A Dimethyladenosine trans 100.0 0 0 522.6 23.0 259 6-278 6-269 (271) 3 1zq9_A Probable dimethyladenos 100.0 0 0 519.2 19.9 248 21-279 2-280 (285) 4 1qyr_A KSGA, high level kasuga 100.0 0 0 516.1 20.7 248 27-279 1-251 (252) 5 2h1r_A Dimethyladenosine trans 100.0 0 0 510.3 20.4 253 16-279 11-292 (299) 6 3ftd_A Dimethyladenosine trans 100.0 0 0 511.9 18.5 246 18-279 2-247 (249) 7 1qam_A ERMC' methyltransferase 100.0 0 0 474.8 20.6 238 20-278 3-241 (244) 8 1i4w_A Mitochondrial replicati 100.0 0 0 442.9 17.2 269 1-278 11-332 (353) 9 1yub_A Ermam, rRNA methyltrans 100.0 0 0 444.9 13.5 239 21-280 3-242 (245) 10 1wy7_A Hypothetical protein PH 99.5 2E-14 8.3E-19 108.7 8.9 118 6-131 4-126 (207) 11 1ne2_A Hypothetical protein TA 99.2 2.8E-10 1.2E-14 82.8 13.4 108 10-129 10-122 (200) 12 1dus_A MJ0882; hypothetical pr 99.2 1.7E-10 7.3E-15 84.2 9.6 108 24-139 31-141 (194) 13 2ih2_A Modification methylase 99.1 7.2E-10 3E-14 80.3 10.2 102 13-128 6-109 (421) 14 3lpm_A Putative methyltransfer 99.1 2.9E-10 1.2E-14 82.8 7.1 102 26-132 30-134 (259) 15 2ozv_A Hypothetical protein AT 99.0 4.2E-10 1.8E-14 81.8 6.6 102 27-131 19-129 (260) 16 2yvl_A TRMI protein, hypotheti 99.0 2.3E-09 9.5E-14 77.2 8.4 93 30-127 74-168 (248) 17 1jg1_A PIMT;, protein-L-isoasp 99.0 2.1E-09 8.9E-14 77.4 8.0 82 26-108 71-153 (235) 18 2qm3_A Predicted methyltransfe 98.9 5.6E-09 2.4E-13 74.8 9.5 113 17-132 140-256 (373) 19 2f8l_A Hypothetical protein LM 98.9 1.6E-08 6.8E-13 71.9 11.7 178 18-212 98-306 (344) 20 1vbf_A 231AA long hypothetical 98.9 4.5E-09 1.9E-13 75.4 8.5 77 29-107 52-128 (231) 21 1xxl_A YCGJ protein; structura 98.9 3E-09 1.3E-13 76.5 7.2 77 33-110 7-84 (239) 22 1l3i_A Precorrin-6Y methyltran 98.9 1.1E-08 4.5E-13 73.0 9.2 103 31-138 17-121 (192) 23 1yb2_A Hypothetical protein TA 98.9 2.8E-09 1.2E-13 76.6 6.1 87 36-127 99-189 (275) 24 1wzn_A SAM-dependent methyltra 98.9 5.1E-09 2.1E-13 75.0 7.2 77 34-111 28-104 (252) 25 1dl5_A Protein-L-isoaspartate 98.8 1E-08 4.2E-13 73.2 7.9 82 29-110 57-141 (317) 26 2b3t_A Protein methyltransfera 98.8 1.1E-08 4.7E-13 72.9 7.3 104 23-132 76-191 (276) 27 1i9g_A Hypothetical protein RV 98.8 1.9E-08 7.9E-13 71.5 8.4 169 30-215 82-264 (280) 28 3evz_A Methyltransferase; NYSG 98.8 9.5E-09 4E-13 73.3 6.6 98 28-130 36-136 (230) 29 3mti_A RRNA methylase; SAM-dep 98.8 1.7E-08 7.3E-13 71.7 7.9 91 35-130 11-102 (185) 30 3kkz_A Uncharacterized protein 98.8 1.1E-08 4.7E-13 72.9 6.8 80 32-111 30-112 (267) 31 2esr_A Methyltransferase; stru 98.8 7.5E-09 3.1E-13 74.0 5.9 94 35-131 18-114 (177) 32 2yxd_A Probable cobalt-precorr 98.8 1.4E-08 6.1E-13 72.2 7.3 77 30-107 18-95 (183) 33 2fyt_A Protein arginine N-meth 98.8 9.9E-09 4.2E-13 73.2 6.4 89 22-110 33-128 (340) 34 3e05_A Precorrin-6Y C5,15-meth 98.8 6.8E-08 2.9E-12 68.0 10.6 128 30-163 23-152 (204) 35 2yxe_A Protein-L-isoaspartate 98.8 1.9E-08 8E-13 71.5 7.7 82 25-107 56-140 (215) 36 3fpf_A Mtnas, putative unchara 98.8 1.6E-08 6.9E-13 71.9 7.2 101 33-139 108-210 (298) 37 3b3f_A Histone-arginine methyl 98.8 1.2E-08 4.9E-13 72.8 6.2 94 13-112 11-112 (341) 38 2pwy_A TRNA (adenine-N(1)-)-me 98.8 2.4E-08 1E-12 70.8 7.8 93 31-127 80-176 (258) 39 1vl5_A Unknown conserved prote 98.8 1.5E-08 6.3E-13 72.1 6.6 91 36-130 26-117 (260) 40 3gnl_A Uncharacterized protein 98.8 1.6E-07 6.7E-12 65.7 11.9 97 37-138 13-112 (244) 41 3mb5_A SAM-dependent methyltra 98.7 3.7E-08 1.6E-12 69.7 8.1 94 30-128 76-173 (255) 42 1o54_A SAM-dependent O-methylt 98.7 4.5E-08 1.9E-12 69.2 8.4 93 30-127 95-191 (277) 43 3gdh_A Trimethylguanosine synt 98.7 1E-08 4.4E-13 73.1 5.0 93 31-129 61-156 (241) 44 2p8j_A S-adenosylmethionine-de 98.7 1.9E-08 7.8E-13 71.5 6.2 85 27-111 3-87 (209) 45 3ccf_A Cyclopropane-fatty-acyl 98.7 1.6E-08 6.6E-13 72.0 5.7 70 37-111 47-116 (279) 46 2frn_A Hypothetical protein PH 98.7 1E-08 4.3E-13 73.2 4.7 85 37-128 117-203 (278) 47 3ege_A Putative methyltransfer 98.7 1.1E-08 4.7E-13 72.9 4.9 87 31-127 18-104 (261) 48 2fhp_A Methylase, putative; al 98.7 6.3E-08 2.7E-12 68.3 8.7 109 32-141 28-142 (187) 49 2pbf_A Protein-L-isoaspartate 98.7 5.3E-08 2.2E-12 68.7 8.3 85 25-110 57-155 (227) 50 3dlc_A Putative S-adenosyl-L-m 98.7 1.8E-08 7.4E-13 71.7 5.7 90 33-127 30-121 (219) 51 2nxc_A L11 mtase, ribosomal pr 98.7 6.1E-08 2.6E-12 68.3 8.4 88 45-138 118-205 (254) 52 3f4k_A Putative methyltransfer 98.7 3.4E-08 1.4E-12 69.9 7.1 86 23-111 24-112 (257) 53 3dtn_A Putative methyltransfer 98.7 3E-08 1.2E-12 70.3 6.6 75 36-111 32-108 (234) 54 2yqz_A Hypothetical protein TT 98.7 3.8E-08 1.6E-12 69.6 6.9 89 35-128 26-115 (263) 55 1nw3_A Histone methyltransfera 98.7 5.5E-08 2.3E-12 68.6 7.6 94 31-125 139-243 (416) 56 2okc_A Type I restriction enzy 98.7 2.6E-07 1.1E-11 64.4 11.1 183 13-212 138-358 (445) 57 3lec_A NADB-rossmann superfami 98.7 1.1E-07 4.4E-12 66.9 8.9 98 36-138 12-112 (230) 58 1r18_A Protein-L-isoaspartate( 98.7 8.3E-08 3.5E-12 67.5 8.2 83 25-108 61-158 (227) 59 2o57_A Putative sarcosine dime 98.7 4.4E-08 1.8E-12 69.2 6.7 79 33-111 68-148 (297) 60 3bkx_A SAM-dependent methyltra 98.7 9.8E-08 4.1E-12 67.1 8.4 93 37-129 33-135 (275) 61 3lbf_A Protein-L-isoaspartate 98.7 1E-07 4.4E-12 66.9 8.5 80 25-106 56-136 (210) 62 3d2l_A SAM-dependent methyltra 98.7 5.7E-08 2.4E-12 68.5 7.1 74 34-111 22-95 (243) 63 3b3j_A Histone-arginine methyl 98.6 4.9E-08 2.1E-12 68.9 6.7 83 29-112 136-224 (480) 64 1xtp_A LMAJ004091AAA; SGPP, st 98.6 9.7E-08 4.1E-12 67.1 8.0 104 32-139 78-181 (254) 65 3kr9_A SAM-dependent methyltra 98.6 1.1E-07 4.7E-12 66.7 8.2 97 36-137 6-105 (225) 66 3hm2_A Precorrin-6Y C5,15-meth 98.6 6.6E-08 2.8E-12 68.1 7.0 78 31-108 9-88 (178) 67 2b25_A Hypothetical protein; s 98.6 7.7E-08 3.2E-12 67.7 7.3 77 31-107 89-179 (336) 68 3eey_A Putative rRNA methylase 98.6 6E-08 2.5E-12 68.4 6.7 81 45-128 20-104 (197) 69 3g5l_A Putative S-adenosylmeth 98.6 2.6E-08 1.1E-12 70.6 4.8 104 1-110 1-105 (253) 70 1nkv_A Hypothetical protein YJ 98.6 7.3E-08 3.1E-12 67.8 7.1 77 32-108 21-99 (256) 71 1y8c_A S-adenosylmethionine-de 98.6 9.3E-08 3.9E-12 67.2 7.4 77 34-111 22-100 (246) 72 1ve3_A Hypothetical protein PH 98.6 6.9E-08 2.9E-12 68.0 6.4 65 45-110 36-100 (227) 73 1g6q_1 HnRNP arginine N-methyl 98.6 8.2E-08 3.4E-12 67.6 6.5 94 30-128 17-116 (328) 74 2ar0_A M.ecoki, type I restric 98.6 1.2E-06 5.2E-11 60.2 12.2 188 13-211 136-362 (541) 75 3hnr_A Probable methyltransfer 98.6 5.7E-08 2.4E-12 68.5 5.3 72 37-112 35-106 (220) 76 3grz_A L11 mtase, ribosomal pr 98.6 1E-07 4.4E-12 66.9 6.6 83 45-133 58-141 (205) 77 3a27_A TYW2, uncharacterized p 98.6 5.5E-08 2.3E-12 68.6 5.1 108 23-138 87-206 (272) 78 2pjd_A Ribosomal RNA small sub 98.6 3.9E-08 1.6E-12 69.5 4.2 102 31-139 181-287 (343) 79 2pxx_A Uncharacterized protein 98.6 4.4E-08 1.8E-12 69.2 4.4 79 31-111 27-105 (215) 80 1zx0_A Guanidinoacetate N-meth 98.6 9E-08 3.8E-12 67.3 6.0 73 35-108 49-121 (236) 81 1i1n_A Protein-L-isoaspartate 98.5 2.1E-07 9E-12 65.0 7.6 83 26-109 55-147 (226) 82 3bus_A REBM, methyltransferase 98.5 1.9E-07 7.8E-12 65.3 7.2 78 33-110 47-126 (273) 83 3dh0_A SAM dependent methyltra 98.5 1.1E-07 4.6E-12 66.8 5.8 74 37-110 27-103 (219) 84 1nv8_A HEMK protein; class I a 98.5 1.6E-07 6.8E-12 65.7 6.6 105 24-131 90-206 (284) 85 3dmg_A Probable ribosomal RNA 98.5 2.1E-07 8.8E-12 65.0 7.0 90 36-130 220-311 (381) 86 2p35_A Trans-aconitate 2-methy 98.5 1.3E-07 5.3E-12 66.4 5.9 85 35-128 21-106 (259) 87 3mgg_A Methyltransferase; NYSG 98.5 1.6E-07 6.7E-12 65.8 5.6 80 27-110 21-102 (276) 88 3bkw_A MLL3908 protein, S-aden 98.5 2.8E-07 1.2E-11 64.2 6.8 93 13-110 12-104 (243) 89 2ex4_A Adrenal gland protein A 98.5 4E-07 1.7E-11 63.2 7.2 88 43-133 75-163 (241) 90 1fbn_A MJ fibrillarin homologu 98.5 4.8E-07 2E-11 62.8 7.5 99 35-136 59-162 (230) 91 1or8_A Protein arginine N-meth 98.5 1.7E-07 7E-12 65.6 5.0 92 18-110 22-121 (340) 92 3gu3_A Methyltransferase; alph 98.4 4.4E-07 1.8E-11 63.0 7.2 80 32-111 6-88 (284) 93 3g5t_A Trans-aconitate 3-methy 98.4 4.8E-07 2E-11 62.7 7.2 97 33-130 23-126 (299) 94 2ipx_A RRNA 2'-O-methyltransfe 98.4 5.3E-07 2.2E-11 62.5 7.4 98 39-138 69-168 (233) 95 2fk8_A Methoxy mycolic acid sy 98.4 4.2E-07 1.7E-11 63.2 6.4 75 33-107 76-152 (318) 96 3lkd_A Type I restriction-modi 98.4 1.4E-05 5.7E-10 53.8 14.1 190 12-212 183-409 (542) 97 1nt2_A Fibrillarin-like PRE-rR 98.4 1E-06 4.4E-11 60.7 8.3 103 35-139 43-148 (210) 98 3ofk_A Nodulation protein S; N 98.4 9.3E-07 3.9E-11 61.0 7.8 87 39-131 43-129 (216) 99 3g2m_A PCZA361.24; SAM-depende 98.4 4.7E-07 2E-11 62.9 6.3 77 34-112 70-150 (299) 100 3bxo_A N,N-dimethyltransferase 98.4 3E-07 1.3E-11 64.0 5.2 77 29-111 23-99 (239) 101 2as0_A Hypothetical protein PH 98.4 4.5E-07 1.9E-11 63.0 6.0 101 29-131 200-303 (396) 102 1ws6_A Methyltransferase; stru 98.4 5.6E-07 2.4E-11 62.4 6.3 94 44-140 38-134 (171) 103 3iv6_A Putative Zn-dependent a 98.4 5.3E-07 2.2E-11 62.5 6.1 85 41-130 39-123 (261) 104 2p7i_A Hypothetical protein; p 98.3 4.4E-07 1.8E-11 63.0 4.5 63 45-111 40-102 (250) 105 2fpo_A Methylase YHHF; structu 98.3 1.1E-06 4.5E-11 60.6 6.4 120 35-161 41-165 (202) 106 3hem_A Cyclopropane-fatty-acyl 98.3 1.5E-06 6.2E-11 59.7 6.9 74 34-107 59-134 (302) 107 3l8d_A Methyltransferase; stru 98.3 5.3E-07 2.2E-11 62.5 4.6 72 35-111 43-114 (242) 108 3lcc_A Putative methyl chlorid 98.3 1.8E-06 7.6E-11 59.2 7.3 76 35-112 55-132 (235) 109 3m70_A Tellurite resistance pr 98.3 1.5E-06 6.5E-11 59.6 6.9 72 39-111 112-183 (286) 110 1u2z_A Histone-lysine N-methyl 98.3 1.5E-06 6.2E-11 59.7 6.7 62 31-92 226-288 (433) 111 2h00_A Methyltransferase 10 do 98.3 1.8E-06 7.4E-11 59.3 7.1 117 15-133 25-156 (254) 112 3c0k_A UPF0064 protein YCCW; P 98.3 1.6E-06 6.6E-11 59.6 6.8 105 26-132 199-308 (396) 113 2kw5_A SLR1183 protein; struct 98.3 6.3E-07 2.6E-11 62.1 4.6 65 46-111 28-92 (202) 114 3khk_A Type I restriction-modi 98.3 1.6E-05 6.8E-10 53.3 11.6 186 13-212 212-447 (544) 115 1g8a_A Fibrillarin-like PRE-rR 98.3 3.3E-06 1.4E-10 57.6 8.1 68 40-108 66-135 (227) 116 1im8_A YECO; methyltransferase 98.3 2E-06 8.3E-11 59.0 6.8 67 45-111 56-127 (244) 117 1kpg_A CFA synthase;, cyclopro 98.2 1.8E-06 7.6E-11 59.2 6.3 75 33-107 50-126 (287) 118 2gpy_A O-methyltransferase; st 98.2 1.4E-06 5.9E-11 59.9 5.8 97 30-128 37-139 (233) 119 3jwg_A HEN1, methyltransferase 98.2 4.5E-06 1.9E-10 56.7 8.2 98 33-133 15-119 (219) 120 3ou2_A SAM-dependent methyltra 98.2 3.2E-06 1.3E-10 57.7 7.4 66 41-110 40-105 (218) 121 2avn_A Ubiquinone/menaquinone 98.2 2.6E-06 1.1E-10 58.3 6.8 60 45-110 52-111 (260) 122 1pjz_A Thiopurine S-methyltran 98.2 1.7E-06 7.2E-11 59.3 5.8 77 31-109 7-96 (203) 123 3ckk_A TRNA (guanine-N(7)-)-me 98.2 2.4E-06 9.9E-11 58.5 6.4 80 47-127 46-133 (235) 124 2i6g_A Putative methyltransfer 98.2 4.8E-06 2E-10 56.5 7.9 71 39-110 23-94 (199) 125 3e8s_A Putative SAM dependent 98.2 8E-07 3.4E-11 61.4 3.9 69 37-106 42-110 (227) 126 3ocj_A Putative exported prote 98.2 1.2E-06 5E-11 60.3 4.8 79 45-128 116-198 (305) 127 3id6_C Fibrillarin-like rRNA/T 98.2 3.3E-06 1.4E-10 57.5 6.8 93 41-135 70-164 (232) 128 1yzh_A TRNA (guanine-N(7)-)-me 98.2 2.9E-06 1.2E-10 57.9 6.4 79 47-127 41-121 (214) 129 2yx1_A Hypothetical protein MJ 98.2 2.2E-06 9.4E-11 58.6 5.5 90 37-138 187-278 (336) 130 1ri5_A MRNA capping enzyme; me 98.2 2.7E-06 1.1E-10 58.2 5.8 66 44-109 61-128 (298) 131 2vdv_E TRNA (guanine-N(7)-)-me 98.2 3.7E-06 1.5E-10 57.3 6.4 80 45-126 47-137 (246) 132 3ggd_A SAM-dependent methyltra 98.2 1.1E-06 4.5E-11 60.6 3.7 64 45-111 54-117 (245) 133 1wxx_A TT1595, hypothetical pr 98.2 1.5E-06 6.2E-11 59.7 4.4 101 26-131 189-293 (382) 134 1xva_A Glycine N-methyltransfe 98.1 2.4E-06 1E-10 58.4 5.2 73 35-108 44-121 (292) 135 3jwh_A HEN1; methyltransferase 98.1 4.7E-06 2E-10 56.6 6.4 79 33-111 15-100 (217) 136 3c3p_A Methyltransferase; NP_9 98.1 2.1E-06 8.9E-11 58.8 4.5 79 30-108 39-121 (210) 137 3m33_A Uncharacterized protein 98.1 9.6E-06 4E-10 54.7 7.8 94 3-106 4-102 (226) 138 3lcv_B Sisomicin-gentamicin re 98.1 1.6E-06 6.7E-11 59.5 3.7 65 45-109 130-195 (281) 139 1x19_A CRTF-related protein; m 98.1 2.1E-05 8.9E-10 52.6 9.4 92 34-131 177-271 (359) 140 1uwv_A 23S rRNA (uracil-5-)-me 98.1 9E-06 3.8E-10 54.9 7.4 160 30-211 269-432 (433) 141 3dr5_A Putative O-methyltransf 98.1 4.3E-06 1.8E-10 56.8 5.6 73 35-107 44-121 (221) 142 3h2b_A SAM-dependent methyltra 98.1 2E-06 8.2E-11 59.0 3.8 78 24-110 19-99 (203) 143 2fca_A TRNA (guanine-N(7)-)-me 98.1 7.4E-06 3.1E-10 55.4 6.6 61 47-107 38-100 (213) 144 1p91_A Ribosomal RNA large sub 98.0 1.1E-05 4.6E-10 54.3 6.7 90 33-130 72-162 (269) 145 3gjy_A Spermidine synthase; AP 98.0 9.1E-06 3.8E-10 54.8 6.2 98 46-146 88-194 (317) 146 3cgg_A SAM-dependent methyltra 98.0 5.2E-06 2.2E-10 56.3 4.8 66 39-110 39-104 (195) 147 3bgv_A MRNA CAP guanine-N7 met 98.0 2.7E-05 1.1E-09 51.9 8.0 97 35-131 20-130 (313) 148 3p2e_A 16S rRNA methylase; met 98.0 1.4E-05 5.7E-10 53.7 6.5 74 37-111 15-94 (225) 149 2ift_A Putative methylase HI07 98.0 1.6E-05 6.6E-10 53.4 6.6 107 47-157 53-164 (201) 150 3fzg_A 16S rRNA methylase; met 98.0 9.5E-06 4E-10 54.7 5.4 71 33-105 37-108 (200) 151 3cc8_A Putative methyltransfer 98.0 6.6E-06 2.8E-10 55.7 4.5 68 37-110 23-90 (230) 152 3frh_A 16S rRNA methylase; met 97.9 1.2E-05 5E-10 54.1 5.6 67 42-110 100-166 (253) 153 3e23_A Uncharacterized protein 97.9 2.2E-05 9.2E-10 52.5 6.8 72 33-112 31-102 (211) 154 3mcz_A O-methyltransferase; ad 97.9 0.0001 4.3E-09 48.3 9.4 93 36-131 168-263 (352) 155 2b78_A Hypothetical protein SM 97.8 7.5E-05 3.2E-09 49.1 8.0 103 26-131 190-299 (385) 156 2r3s_A Uncharacterized protein 97.8 0.00011 4.5E-09 48.2 8.6 93 35-132 151-248 (335) 157 2qfm_A Spermine synthase; sper 97.8 3.2E-05 1.3E-09 51.5 5.7 62 46-107 187-257 (364) 158 2avd_A Catechol-O-methyltransf 97.8 3.8E-05 1.6E-09 51.0 6.0 79 29-107 51-133 (229) 159 1sui_A Caffeoyl-COA O-methyltr 97.8 3.7E-05 1.5E-09 51.1 5.9 85 24-108 55-144 (247) 160 3dxy_A TRNA (guanine-N(7)-)-me 97.8 4.1E-05 1.7E-09 50.7 6.1 106 8-126 7-114 (218) 161 2gs9_A Hypothetical protein TT 97.8 2.2E-05 9.1E-10 52.5 4.5 59 45-110 34-92 (211) 162 3hvi_A Catechol O-methyltransf 97.8 2.2E-05 9.2E-10 52.5 4.4 77 31-107 42-122 (221) 163 2i62_A Nicotinamide N-methyltr 97.7 1.9E-05 8.1E-10 52.8 3.9 58 43-100 52-109 (265) 164 3ll7_A Putative methyltransfer 97.7 3.6E-05 1.5E-09 51.1 5.3 81 45-128 91-174 (410) 165 3bt7_A TRNA (uracil-5-)-methyl 97.7 5.2E-05 2.2E-09 50.1 5.9 156 31-211 198-369 (369) 166 2gb4_A Thiopurine S-methyltran 97.7 7.9E-05 3.3E-09 49.0 6.6 79 31-110 52-148 (252) 167 3opn_A Putative hemolysin; str 97.7 0.00015 6.4E-09 47.2 7.7 186 37-232 26-223 (232) 168 3dp7_A SAM-dependent methyltra 97.7 0.00013 5.4E-09 47.7 7.1 93 37-132 169-264 (363) 169 3duw_A OMT, O-methyltransferas 97.6 5.3E-05 2.2E-09 50.1 5.0 77 31-107 42-122 (223) 170 2igt_A SAM dependent methyltra 97.6 0.00013 5.5E-09 47.6 7.0 99 28-128 132-236 (332) 171 3g07_A 7SK snRNA methylphospha 97.6 3.9E-05 1.6E-09 50.9 4.2 48 45-92 44-92 (292) 172 2hnk_A SAM-dependent O-methylt 97.6 5.6E-05 2.3E-09 49.9 5.0 83 25-107 37-124 (239) 173 3c3y_A Pfomt, O-methyltransfer 97.6 7.7E-05 3.3E-09 49.1 5.7 85 24-108 46-135 (237) 174 2qe6_A Uncharacterized protein 97.6 0.00015 6.3E-09 47.3 7.1 98 27-125 35-165 (274) 175 2ip2_A Probable phenazine-spec 97.6 0.00034 1.4E-08 45.1 8.9 90 36-132 157-249 (334) 176 3adn_A Spermidine synthase; am 97.6 0.00015 6.4E-09 47.2 7.0 78 31-108 64-151 (294) 177 3i9f_A Putative type 11 methyl 97.6 2.8E-05 1.2E-09 51.8 3.2 46 45-91 15-60 (170) 178 1qzz_A RDMB, aclacinomycin-10- 97.6 0.00025 1.1E-08 45.9 7.8 98 36-139 171-275 (374) 179 3cbg_A O-methyltransferase; cy 97.6 8.9E-05 3.8E-09 48.7 5.4 79 29-107 54-136 (232) 180 1mjf_A Spermidine synthase; sp 97.6 6E-05 2.5E-09 49.8 4.4 63 45-107 73-146 (281) 181 1vlm_A SAM-dependent methyltra 97.5 5.4E-05 2.3E-09 50.0 3.9 54 46-110 46-99 (219) 182 2aot_A HMT, histamine N-methyl 97.5 0.00017 7E-09 47.0 6.3 47 47-93 52-105 (292) 183 2a14_A Indolethylamine N-methy 97.5 0.00013 5.3E-09 47.7 5.4 50 44-93 52-101 (263) 184 1inl_A Spermidine synthase; be 97.4 0.0002 8.2E-09 46.6 5.6 78 31-108 71-157 (296) 185 1tw3_A COMT, carminomycin 4-O- 97.4 0.00083 3.5E-08 42.6 8.7 90 37-132 173-265 (360) 186 2r6z_A UPF0341 protein in RSP 97.4 0.00012 5.2E-09 47.8 4.3 92 37-130 73-174 (258) 187 2pt6_A Spermidine synthase; tr 97.4 0.00024 1E-08 46.0 5.8 78 31-108 97-183 (321) 188 3gwz_A MMCR; methyltransferase 97.4 0.001 4.4E-08 42.0 8.9 91 36-132 191-284 (369) 189 3dli_A Methyltransferase; PSI- 97.4 0.0001 4.4E-09 48.3 3.7 55 35-90 28-83 (240) 190 1uir_A Polyamine aminopropyltr 97.4 0.00027 1.2E-08 45.6 5.7 78 30-107 57-144 (314) 191 1xj5_A Spermidine synthase 1; 97.4 0.0004 1.7E-08 44.6 6.5 77 31-107 101-186 (334) 192 2vdw_A Vaccinia virus capping 97.3 0.00032 1.3E-08 45.2 5.8 88 35-123 34-134 (302) 193 3bzb_A Uncharacterized protein 97.3 0.0003 1.2E-08 45.4 5.4 60 33-92 65-125 (281) 194 3hp7_A Hemolysin, putative; st 97.3 0.002 8.6E-08 40.2 9.7 176 46-232 84-271 (291) 195 2i7c_A Spermidine synthase; tr 97.3 0.00035 1.5E-08 44.9 5.7 76 32-107 60-144 (283) 196 3bwc_A Spermidine synthase; SA 97.3 0.00066 2.8E-08 43.3 6.7 77 31-107 76-161 (304) 197 1iy9_A Spermidine synthase; ro 97.3 0.00041 1.7E-08 44.5 5.7 117 32-156 57-189 (275) 198 2g72_A Phenylethanolamine N-me 97.3 0.00095 4E-08 42.3 7.5 51 44-94 68-118 (289) 199 2o07_A Spermidine synthase; st 97.2 0.00061 2.6E-08 43.5 5.8 77 31-107 76-161 (304) 200 2b2c_A Spermidine synthase; be 97.1 0.00045 1.9E-08 44.3 4.7 77 32-108 90-175 (314) 201 3ldu_A Putative methylase; str 97.1 0.0013 5.5E-08 41.4 6.9 94 31-129 179-313 (385) 202 1m6y_A S-adenosyl-methyltransf 97.1 0.00062 2.6E-08 43.4 4.8 78 31-108 10-88 (301) 203 3i53_A O-methyltransferase; CO 97.0 0.00081 3.4E-08 42.7 5.3 61 45-106 167-230 (332) 204 2cmg_A Spermidine synthase; tr 96.9 0.00058 2.5E-08 43.6 3.9 92 32-128 54-152 (262) 205 3k0b_A Predicted N6-adenine-sp 96.9 0.0032 1.3E-07 39.0 7.4 94 31-129 185-319 (393) 206 2jjq_A Uncharacterized RNA met 96.8 0.0032 1.3E-07 39.1 6.7 101 31-139 273-376 (425) 207 2b9e_A NOL1/NOP2/SUN domain fa 96.8 0.0033 1.4E-07 38.9 6.5 92 39-131 94-188 (309) 208 2oyr_A UPF0341 protein YHIQ; a 96.6 0.0014 5.7E-08 41.3 3.8 70 38-108 77-158 (258) 209 1zkd_A DUF185; X-RAY, NESG, RP 96.5 0.0075 3.2E-07 36.7 6.7 71 23-93 43-134 (387) 210 3lst_A CALO1 methyltransferase 96.5 0.0062 2.6E-07 37.2 6.2 83 40-130 177-261 (348) 211 3ndi_A Methyltransferase; S-ad 96.3 0.01 4.2E-07 35.9 6.4 56 33-89 93-148 (416) 212 1jsx_A Glucose-inhibited divis 96.1 0.011 4.5E-07 35.8 5.7 78 31-109 50-129 (207) 213 3g89_A Ribosomal RNA small sub 96.0 0.0055 2.3E-07 37.6 4.0 66 45-110 78-145 (249) 214 3giw_A Protein of unknown func 95.9 0.018 7.8E-07 34.3 6.2 114 27-140 36-189 (277) 215 1ixk_A Methyltransferase; open 95.6 0.046 2E-06 31.8 7.5 83 26-109 98-183 (315) 216 2zfu_A Nucleomethylin, cerebra 95.5 0.014 5.8E-07 35.1 4.5 65 23-111 48-113 (215) 217 1wg8_A Predicted S-adenosylmet 95.3 0.017 7.1E-07 34.5 4.3 76 29-108 4-79 (285) 218 3ajd_A Putative methyltransfer 95.3 0.035 1.5E-06 32.5 5.8 103 26-129 63-168 (274) 219 3htx_A HEN1; HEN1, small RNA m 95.2 0.027 1.2E-06 33.2 5.2 89 21-109 692-792 (950) 220 1g55_A DNA cytosine methyltran 95.2 0.033 1.4E-06 32.7 5.5 74 49-127 3-78 (343) 221 2yxl_A PH0851 protein, 450AA l 95.0 0.065 2.7E-06 30.9 6.7 78 30-108 243-323 (450) 222 3cvo_A Methyltransferase-like 95.0 0.04 1.7E-06 32.2 5.4 60 30-93 15-74 (202) 223 2frx_A Hypothetical protein YE 95.0 0.078 3.3E-06 30.4 6.9 82 26-108 95-181 (479) 224 1sqg_A SUN protein, FMU protei 94.8 0.078 3.3E-06 30.4 6.5 79 26-105 226-306 (429) 225 2qrv_A DNA (cytosine-5)-methyl 94.7 0.085 3.6E-06 30.2 6.5 78 47-128 15-94 (295) 226 1dct_A Protein (modification m 94.6 0.053 2.2E-06 31.4 5.4 59 50-113 2-60 (324) 227 2c7p_A Modification methylase 94.4 0.1 4.3E-06 29.7 6.4 73 47-128 10-82 (327) 228 2wa2_A Non-structural protein 94.4 0.056 2.3E-06 31.3 5.0 44 37-80 72-116 (276) 229 3m6w_A RRNA methylase; rRNA me 94.2 0.066 2.8E-06 30.9 5.1 81 26-107 81-163 (464) 230 3me5_A Cytosine-specific methy 93.9 0.064 2.7E-06 30.9 4.5 62 49-111 89-150 (482) 231 3m4x_A NOL1/NOP2/SUN family pr 93.7 0.094 4E-06 29.9 5.1 79 29-108 88-169 (456) 232 2bm8_A Cephalosporin hydroxyla 93.7 0.096 4E-06 29.8 5.1 81 25-109 59-144 (236) 233 2dul_A N(2),N(2)-dimethylguano 93.6 0.11 4.7E-06 29.4 5.3 89 46-138 46-151 (378) 234 3dou_A Ribosomal RNA large sub 93.5 0.099 4.2E-06 29.7 5.0 54 45-109 23-76 (191) 235 1kyz_A COMT, caffeic acid 3-O- 93.4 0.18 7.5E-06 28.2 6.1 96 37-140 189-286 (365) 236 3gcz_A Polyprotein; flavivirus 93.1 0.13 5.6E-06 28.9 5.1 43 37-79 80-123 (282) 237 1fp1_D Isoliquiritigenin 2'-O- 92.7 0.14 5.8E-06 28.8 4.6 65 37-106 198-263 (372) 238 1xdz_A Methyltransferase GIDB; 92.3 0.11 4.5E-06 29.5 3.8 63 46-108 69-133 (240) 239 3g7u_A Cytosine-specific methy 92.2 0.23 9.5E-06 27.5 5.3 76 49-128 3-82 (376) 240 2py6_A Methyltransferase FKBM; 92.2 0.25 1.1E-05 27.2 5.5 50 44-93 223-275 (409) 241 2zkq_m 40S ribosomal protein S 90.8 0.34 1.4E-05 26.4 5.0 48 233-280 22-75 (152) 242 1zg3_A Isoflavanone 4'-O-methy 90.8 0.2 8.3E-06 27.9 3.7 82 46-139 192-278 (358) 243 1g60_A Adenine-specific methyl 90.4 0.69 2.9E-05 24.5 6.2 30 99-130 7-36 (260) 244 1fp2_A Isoflavone O-methytrans 90.3 0.94 4E-05 23.7 6.9 82 46-139 187-273 (352) 245 1ej0_A FTSJ; methyltransferase 89.0 0.37 1.6E-05 26.2 4.0 77 45-131 20-102 (180) 246 2vqe_M 30S ribosomal protein S 89.0 0.35 1.5E-05 26.4 3.8 48 234-281 12-65 (126) 247 2px2_A Genome polyprotein [con 87.4 0.86 3.6E-05 23.9 5.0 44 36-79 62-106 (269) 248 2zig_A TTHA0409, putative modi 85.6 1.8 7.7E-05 21.9 6.2 30 99-130 24-53 (297) 249 3gpu_A DNA glycosylase; DNA gl 83.9 1.1 4.8E-05 23.2 4.2 53 226-278 147-208 (256) 250 1boo_A Protein (N-4 cytosine-s 83.7 2.1 9E-05 21.5 5.6 32 97-130 15-46 (323) 251 1tdz_A Formamidopyrimidine-DNA 82.4 1.5 6.1E-05 22.5 4.3 51 228-278 148-207 (272) 252 1eg2_A Modification methylase 82.4 2.5 0.00011 21.0 6.1 31 98-130 41-71 (319) 253 1lss_A TRK system potassium up 81.8 2.6 0.00011 20.9 6.0 78 48-131 4-83 (140) 254 2yui_A Anamorsin; cytokine-ind 80.6 0.16 6.6E-06 28.5 -1.2 75 46-128 3-77 (182) 255 2p41_A Type II methyltransfera 79.8 3.1 0.00013 20.5 5.4 42 37-78 72-114 (305) 256 2oxt_A Nucleoside-2'-O-methylt 79.7 3.1 0.00013 20.4 5.6 43 37-79 64-107 (265) 257 2g1u_A Hypothetical protein TM 79.3 1.8 7.5E-05 22.0 3.9 76 45-126 16-93 (155) 258 1ee8_A MUTM (FPG) protein; bet 77.7 3.6 0.00015 20.1 5.4 52 227-278 136-196 (266) 259 3a46_A Formamidopyrimidine-DNA 76.7 2.7 0.00011 20.8 4.2 47 231-277 151-207 (289) 260 3fwz_A Inner membrane protein 74.5 4.4 0.00018 19.5 5.2 83 48-139 7-93 (140) 261 1k82_A Formamidopyrimidine-DNA 74.4 3.8 0.00016 19.9 4.4 53 226-278 142-203 (268) 262 1mu5_A Type II DNA topoisomera 73.9 4.5 0.00019 19.4 6.7 109 169-282 189-307 (471) 263 3imf_A Short chain dehydrogena 73.7 3.3 0.00014 20.2 4.0 63 45-108 3-68 (257) 264 3lkz_A Non-structural protein 71.6 5.1 0.00021 19.1 5.2 43 36-78 83-126 (321) 265 1k3x_A Endonuclease VIII; hydr 71.6 5.1 0.00021 19.1 5.0 46 233-278 149-203 (262) 266 2z1m_A GDP-D-mannose dehydrata 71.6 5.1 0.00021 19.1 4.8 57 48-108 3-65 (345) 267 3eld_A Methyltransferase; flav 71.0 4.5 0.00019 19.4 4.2 34 36-69 70-103 (300) 268 3cxt_A Dehydrogenase with diff 70.4 5.3 0.00022 19.0 4.4 62 46-108 32-96 (291) 269 2nyu_A Putative ribosomal RNA 68.0 3.3 0.00014 20.2 3.0 24 45-68 20-43 (196) 270 3ofp_M 30S ribosomal protein S 67.4 0.61 2.6E-05 24.8 -0.9 46 234-279 11-62 (113) 271 3h7a_A Short chain dehydrogena 67.2 6.3 0.00027 18.5 5.5 61 47-108 6-69 (252) 272 3evf_A RNA-directed RNA polyme 66.2 6 0.00025 18.7 4.0 30 39-68 66-95 (277) 273 3l4b_C TRKA K+ channel protien 65.8 6.2 0.00026 18.6 4.0 72 51-130 3-81 (218) 274 1yb1_A 17-beta-hydroxysteroid 65.8 6.7 0.00028 18.4 4.6 62 46-108 29-93 (272) 275 2jah_A Clavulanic acid dehydro 64.5 7.1 0.0003 18.2 4.6 63 45-108 4-69 (247) 276 3c85_A Putative glutathione-re 63.9 7.3 0.00031 18.1 5.5 85 48-138 39-126 (183) 277 2b9w_A Putative aminooxidase; 63.1 5.2 0.00022 19.0 3.2 38 45-82 3-42 (424) 278 3ftp_A 3-oxoacyl-[acyl-carrier 63.0 6.8 0.00029 18.3 3.8 62 46-108 26-90 (270) 279 2hmt_A YUAA protein; RCK, KTN, 62.8 6.6 0.00028 18.4 3.7 84 48-138 6-91 (144) 280 2qq5_A DHRS1, dehydrogenase/re 61.4 8.1 0.00034 17.9 4.3 63 45-108 2-67 (260) 281 2jae_A L-amino acid oxidase; o 61.1 7.5 0.00032 18.1 3.7 37 45-82 8-46 (489) 282 2bi7_A UDP-galactopyranose mut 60.5 6.6 0.00028 18.4 3.3 40 47-87 2-43 (384) 283 3nzo_A UDP-N-acetylglucosamine 60.5 8.4 0.00035 17.8 4.5 61 47-108 34-102 (399) 284 2ae2_A Protein (tropinone redu 59.4 8.8 0.00037 17.6 4.4 62 46-108 7-71 (260) 285 2plw_A Ribosomal RNA methyltra 59.3 7.4 0.00031 18.1 3.4 53 46-108 21-76 (201) 286 1o94_A Tmadh, trimethylamine d 58.8 7.6 0.00032 18.0 3.4 36 47-83 388-425 (729) 287 1zem_A Xylitol dehydrogenase; 58.2 9.2 0.00039 17.5 4.4 62 46-108 5-69 (262) 288 3gdg_A Probable NADP-dependent 57.7 9.4 0.00039 17.5 5.7 77 26-108 3-86 (267) 289 2vdc_G Glutamate synthase [NAD 56.3 9 0.00038 17.6 3.4 38 47-85 121-160 (456) 290 1ps9_A 2,4-dienoyl-COA reducta 55.2 9.3 0.00039 17.5 3.4 38 46-84 371-410 (671) 291 3hdq_A UDP-galactopyranose mut 54.8 8.6 0.00036 17.7 3.1 43 45-88 26-70 (397) 292 3iht_A S-adenosyl-L-methionine 54.2 11 0.00045 17.1 6.1 66 35-107 29-95 (174) 293 3im8_A Malonyl acyl carrier pr 53.9 10 0.00043 17.3 3.4 26 41-70 77-102 (307) 294 2oo3_A Protein involved in cat 53.7 4.5 0.00019 19.4 1.6 120 38-164 85-211 (283) 295 2ku7_A MLL1 PHD3-CYP33 RRM chi 53.1 6.2 0.00026 18.6 2.2 24 117-140 63-86 (140) 296 2b4q_A Rhamnolipids biosynthes 52.9 11 0.00047 17.0 4.7 61 46-108 27-90 (276) 297 1rjd_A PPM1P, carboxy methyl t 52.5 11 0.00048 16.9 6.3 41 47-88 97-137 (334) 298 3ijr_A Oxidoreductase, short c 51.7 12 0.00049 16.9 4.9 63 45-108 44-110 (291) 299 1fmc_A 7 alpha-hydroxysteroid 51.2 12 0.0005 16.8 4.2 113 46-165 9-136 (255) 300 1v0j_A UDP-galactopyranose mut 50.2 7.9 0.00033 17.9 2.4 41 48-88 7-49 (399) 301 3ctm_A Carbonyl reductase; alc 50.1 12 0.00052 16.7 4.7 62 46-108 32-96 (279) 302 1nm2_A Malonyl COA:acyl carrie 49.7 13 0.00053 16.7 5.0 13 54-66 95-107 (317) 303 3k30_A Histamine dehydrogenase 49.2 13 0.00054 16.6 3.6 37 48-85 391-429 (690) 304 1hxh_A 3BETA/17BETA-hydroxyste 49.0 13 0.00054 16.6 4.3 60 45-108 3-65 (253) 305 3gmb_A 2-methyl-3-hydroxypyrid 48.8 11 0.00045 17.1 2.9 37 45-82 44-82 (415) 306 2vou_A 2,6-dihydroxypyridine h 48.5 13 0.00053 16.7 3.2 35 47-82 4-40 (397) 307 1ae1_A Tropinone reductase-I; 47.6 14 0.00057 16.5 4.8 62 46-108 19-83 (273) 308 2cjk_A Nuclear polyadenylated 47.2 5.7 0.00024 18.8 1.3 22 119-140 89-110 (167) 309 1iqt_A AUF1, heterogeneous nuc 47.0 7 0.00029 18.3 1.7 20 121-140 3-22 (75) 310 2k4m_A TR8_protein, UPF0146 pr 47.0 14 0.00058 16.4 6.2 68 26-111 18-86 (153) 311 1sjr_A Polypyrimidine tract-bi 46.9 5.3 0.00022 19.0 1.1 21 120-140 49-69 (164) 312 2jvr_A Nucleolar protein 3; RN 46.9 6.3 0.00026 18.5 1.4 21 120-140 31-51 (111) 313 3lyl_A 3-oxoacyl-(acyl-carrier 46.5 14 0.00059 16.4 3.8 61 47-108 4-67 (247) 314 1sez_A Protoporphyrinogen oxid 46.3 14 0.0006 16.3 3.2 35 47-82 12-48 (504) 315 1rkx_A CDP-glucose-4,6-dehydra 46.2 14 0.0006 16.3 4.4 59 47-108 8-70 (357) 316 3nrn_A Uncharacterized protein 46.2 13 0.00054 16.6 2.9 14 120-133 234-247 (421) 317 1w6u_A 2,4-dienoyl-COA reducta 45.7 15 0.00061 16.3 4.6 63 45-108 23-89 (302) 318 1rk8_A CG8781-PA, CG8781-PA pr 45.7 8.1 0.00034 17.9 1.8 22 119-140 74-95 (165) 319 2c07_A 3-oxoacyl-(acyl-carrier 45.4 15 0.00062 16.2 4.3 62 46-108 42-106 (285) 320 2hzc_A Splicing factor U2AF 65 45.0 7.7 0.00032 18.0 1.6 22 119-140 8-29 (87) 321 2dha_A FLJ20171 protein; RRM d 44.7 13 0.00054 16.6 2.7 19 122-140 28-46 (123) 322 3im9_A MCAT, MCT, malonyl COA- 44.5 11 0.00048 16.9 2.4 12 54-65 94-105 (316) 323 3mdf_A Peptidyl-prolyl CIS-tra 44.1 12 0.00051 16.8 2.5 24 117-140 7-30 (85) 324 1d5t_A Guanine nucleotide diss 44.1 12 0.00049 16.9 2.5 32 50-82 8-41 (433) 325 1zk4_A R-specific alcohol dehy 43.8 16 0.00065 16.1 3.7 63 44-108 2-67 (251) 326 3md1_A Nuclear and cytoplasmic 43.3 8 0.00034 17.9 1.5 21 120-140 4-24 (83) 327 3gaf_A 7-alpha-hydroxysteroid 42.7 16 0.00068 16.0 3.9 62 46-108 10-74 (256) 328 2bry_A NEDD9 interacting prote 42.6 16 0.00065 16.1 2.9 52 29-81 65-126 (497) 329 2cqp_A RNA-binding protein 12; 42.2 11 0.00046 17.1 2.1 22 119-140 17-38 (98) 330 2eih_A Alcohol dehydrogenase; 42.2 16 0.00069 15.9 4.5 49 41-89 160-210 (343) 331 2cpf_A RNA binding motif prote 42.1 11 0.00044 17.2 2.0 22 119-140 7-28 (98) 332 1gte_A Dihydropyrimidine dehyd 42.1 14 0.0006 16.3 2.7 31 48-78 332-364 (1025) 333 2iid_A L-amino-acid oxidase; f 42.1 17 0.0007 15.9 3.0 35 48-83 33-69 (498) 334 2f9d_A PRE-mRNA branch site pr 41.8 12 0.0005 16.8 2.2 23 118-140 19-41 (125) 335 1i8t_A UDP-galactopyranose mut 41.4 16 0.00068 16.0 2.8 38 50-88 3-42 (367) 336 1u6f_A Tcubp1, RNA-binding pro 41.3 10 0.00043 17.2 1.8 21 120-140 45-65 (139) 337 1x4a_A Splicing factor, argini 40.9 10 0.00044 17.2 1.8 21 120-140 25-45 (109) 338 1b37_A Protein (polyamine oxid 40.9 13 0.00056 16.5 2.3 35 48-82 4-40 (472) 339 2qc3_A MCT, malonyl COA-acyl c 40.8 15 0.00061 16.3 2.5 24 43-66 78-101 (303) 340 2e58_A MNMC2; tRNA wobble urid 40.7 17 0.00073 15.8 3.5 60 23-82 61-136 (308) 341 3grp_A 3-oxoacyl-(acyl carrier 40.5 17 0.00074 15.8 4.0 82 46-131 25-115 (266) 342 2e1m_A L-glutamate oxidase; L- 40.5 17 0.00074 15.8 2.9 34 45-79 41-76 (376) 343 1xhc_A NADH oxidase /nitrite r 40.1 18 0.00075 15.7 3.1 36 46-81 6-41 (367) 344 2zat_A Dehydrogenase/reductase 40.0 18 0.00075 15.7 4.2 64 44-108 10-76 (260) 345 2cqg_A TDP-43, TAR DNA-binding 40.0 9.1 0.00038 17.5 1.4 22 120-141 18-39 (103) 346 2cqd_A RNA-binding region cont 40.0 7.4 0.00031 18.1 0.9 21 120-140 20-40 (116) 347 3md3_A Nuclear and cytoplasmic 39.9 11 0.00046 17.0 1.8 20 120-139 90-109 (166) 348 2g4b_A Splicing factor U2AF 65 39.8 7.4 0.00031 18.1 0.9 67 99-165 74-155 (172) 349 2ek1_A RNA-binding protein 12; 39.8 12 0.00051 16.8 2.0 23 119-141 17-39 (95) 350 2o23_A HADH2 protein; HSD17B10 39.6 18 0.00076 15.7 4.9 66 39-108 3-71 (265) 351 1hd0_A Protein (heterogeneous 39.5 11 0.00045 17.1 1.7 20 121-140 3-22 (75) 352 1h2v_Z 20 kDa nuclear CAP bind 39.4 14 0.00059 16.4 2.3 24 118-141 40-63 (156) 353 2jwn_A Embryonic polyadenylate 39.2 10 0.00044 17.2 1.6 23 119-141 38-60 (124) 354 2h1y_A Malonyl coenzyme A-acyl 38.9 19 0.00078 15.6 7.5 13 54-66 101-113 (321) 355 1x5s_A Cold-inducible RNA-bind 38.9 11 0.00047 17.0 1.7 21 120-140 15-35 (102) 356 1b7f_A Protein (SXL-lethal pro 38.8 11 0.00046 17.0 1.6 21 120-140 92-112 (168) 357 2qae_A Lipoamide, dihydrolipoy 38.7 19 0.00078 15.6 4.0 35 48-83 174-210 (468) 358 2db1_A Heterogeneous nuclear r 38.6 11 0.00047 17.0 1.7 22 119-140 19-40 (118) 359 2bcg_G Secretory pathway GDP d 38.5 16 0.00068 16.0 2.5 33 49-82 12-46 (453) 360 1ja9_A 4HNR, 1,3,6,8-tetrahydr 38.5 19 0.00079 15.6 4.3 64 44-108 17-84 (274) 361 2fy1_A RNA-binding motif prote 38.1 11 0.00048 16.9 1.6 21 120-140 10-30 (116) 362 1nff_A Putative oxidoreductase 38.0 19 0.0008 15.5 5.0 61 44-108 3-66 (260) 363 2ivd_A PPO, PPOX, protoporphyr 37.5 17 0.00071 15.9 2.4 34 48-82 16-51 (478) 364 3ek2_A Enoyl-(acyl-carrier-pro 37.5 19 0.00082 15.5 5.7 64 43-108 9-77 (271) 365 2e5i_A Heterogeneous nuclear r 37.4 11 0.00045 17.1 1.4 20 121-140 29-48 (124) 366 1wg5_A Heterogeneous nuclear r 37.3 13 0.00054 16.6 1.8 23 118-140 16-38 (104) 367 2dgx_A KIAA0430 protein; RRM d 37.3 16 0.00066 16.1 2.2 21 118-138 10-30 (96) 368 1fje_B Nucleolin RBD12, protei 37.3 16 0.00066 16.1 2.2 21 119-139 15-35 (175) 369 1xq1_A Putative tropinone redu 37.2 20 0.00083 15.5 3.8 62 46-108 12-76 (266) 370 2cpy_A RNA-binding protein 12; 37.1 13 0.00055 16.6 1.8 22 119-140 17-38 (114) 371 2bgk_A Rhizome secoisolaricire 37.1 20 0.00083 15.5 4.4 63 44-108 12-77 (278) 372 2pd4_A Enoyl-[acyl-carrier-pro 37.1 20 0.00083 15.4 6.0 63 44-108 2-69 (275) 373 1x4c_A Splicing factor, argini 37.1 12 0.0005 16.8 1.6 22 119-140 17-38 (108) 374 1wel_A RNA-binding protein 12; 37.0 14 0.00057 16.5 1.9 22 119-140 27-48 (124) 375 2dgo_A Cytotoxic granule-assoc 36.9 13 0.00056 16.5 1.8 21 120-140 18-38 (115) 376 2dh8_A DAZ-associated protein 36.8 9.7 0.00041 17.4 1.1 21 120-140 19-39 (105) 377 1wg1_A KIAA1579 protein, homol 36.8 11 0.00045 17.1 1.3 23 118-140 6-28 (88) 378 2mss_A Protein (musashi1); RNA 36.8 12 0.00048 16.9 1.5 21 121-141 3-23 (75) 379 3iei_A Leucine carboxyl methyl 36.5 20 0.00085 15.4 6.1 41 48-88 91-131 (334) 380 1fcd_A Flavocytochrome C sulfi 35.9 21 0.00087 15.3 3.1 64 47-110 1-83 (401) 381 2dnn_A RNA-binding protein 12; 35.9 8.7 0.00037 17.7 0.7 23 118-140 17-39 (109) 382 2dnl_A Cytoplasmic polyadenyla 35.7 11 0.00047 17.0 1.3 21 120-140 11-31 (114) 383 1yvv_A Amine oxidase, flavin-c 35.7 16 0.00068 16.0 2.1 32 50-82 4-37 (336) 384 1fj7_A Nucleolin RBD1, protein 35.7 13 0.00056 16.5 1.7 22 119-140 19-40 (101) 385 2qy6_A UPF0209 protein YFCK; s 35.7 21 0.00088 15.3 4.9 70 22-91 23-117 (257) 386 2hgm_A HNRPF protein, heteroge 35.7 14 0.00059 16.4 1.8 24 118-141 43-66 (126) 387 1rsg_A FMS1 protein; FAD bindi 35.6 17 0.00073 15.8 2.2 34 48-81 8-43 (516) 388 1no8_A ALY; RBD, REF1-I, BEF, 35.5 13 0.00056 16.5 1.6 22 119-140 30-51 (106) 389 3p5t_L Cleavage and polyadenyl 35.5 13 0.00056 16.5 1.6 21 120-140 4-24 (90) 390 3beg_B Splicing factor, argini 35.3 9.1 0.00038 17.6 0.7 21 120-140 19-39 (115) 391 3b4d_A Polyadenylate-binding p 35.1 18 0.00075 15.7 2.2 22 119-140 7-28 (96) 392 3lov_A Protoporphyrinogen oxid 35.1 21 0.0009 15.2 3.0 35 48-82 4-41 (475) 393 1uaw_A Mouse-musashi-1; RNP-ty 35.0 9.9 0.00041 17.3 0.9 20 121-140 4-23 (77) 394 3egn_A RNA-binding protein 40; 35.0 14 0.00058 16.4 1.6 23 118-140 46-68 (143) 395 2khc_A Testis-specific RNP-typ 34.6 12 0.0005 16.8 1.3 21 120-140 43-63 (118) 396 1xhl_A Short-chain dehydrogena 34.5 22 0.00091 15.2 3.9 63 45-108 23-91 (297) 397 2v0x_A Lamina-associated polyp 34.5 8.2 0.00035 17.8 0.4 52 192-243 68-127 (235) 398 2cqc_A Arginine/serine-rich sp 34.3 15 0.00065 16.1 1.8 22 119-140 17-38 (95) 399 2rhc_B Actinorhodin polyketide 34.3 22 0.00092 15.2 4.6 63 45-108 19-84 (277) 400 3ka7_A Oxidoreductase; structu 34.3 20 0.00084 15.4 2.4 12 120-131 243-254 (425) 401 2dhg_A TRNA selenocysteine ass 34.0 15 0.00063 16.2 1.7 22 119-140 11-32 (104) 402 3n74_A 3-ketoacyl-(acyl-carrie 33.8 22 0.00094 15.1 4.1 59 46-108 7-68 (261) 403 2wbr_A GW182, gawky, LD47780P; 33.7 15 0.00065 16.1 1.7 25 116-140 6-30 (89) 404 1whx_A Hypothetical protein ri 33.3 17 0.00072 15.8 1.9 22 119-140 12-33 (111) 405 2x1f_A MRNA 3'-END-processing 33.3 18 0.00074 15.8 2.0 22 119-140 4-25 (96) 406 2cpj_A Non-POU domain-containi 33.3 6.7 0.00028 18.4 -0.2 21 120-140 18-38 (99) 407 1p27_B RNA-binding protein 8A; 33.1 22 0.00092 15.2 2.4 23 118-140 24-46 (106) 408 2dnq_A RNA-binding protein 4B; 33.1 14 0.0006 16.3 1.5 22 120-141 11-32 (90) 409 1cvj_A Polyadenylate binding p 33.0 17 0.0007 15.9 1.8 24 118-141 99-122 (190) 410 3k89_A Malonyl COA-ACP transac 32.9 23 0.00097 15.0 3.4 16 50-65 87-102 (314) 411 1x4b_A Heterogeneous nuclear r 32.9 14 0.00058 16.4 1.4 21 120-140 30-50 (116) 412 2ywk_A Putative RNA-binding pr 32.9 22 0.00094 15.1 2.4 22 119-140 18-39 (95) 413 3ic9_A Dihydrolipoamide dehydr 32.7 23 0.00095 15.1 2.4 34 48-82 174-209 (492) 414 2aym_A U1 small nuclear ribonu 32.7 19 0.00082 15.5 2.1 24 117-140 8-31 (83) 415 2e5g_A U6 snRNA-specific termi 32.5 20 0.00086 15.4 2.2 23 118-140 9-31 (94) 416 2cpd_A Apobec-1 stimulating pr 32.2 21 0.00088 15.3 2.2 23 118-140 16-38 (99) 417 2kn4_A Immunoglobulin G-bindin 32.2 13 0.00056 16.5 1.2 22 119-140 72-93 (158) 418 2jvo_A Nucleolar protein 3; nu 31.8 15 0.00064 16.2 1.4 22 119-140 33-54 (108) 419 3l9w_A Glutathione-regulated p 31.8 24 0.001 14.9 5.4 78 47-131 3-82 (413) 420 3m1a_A Putative dehydrogenase; 31.7 24 0.001 14.9 4.1 58 47-108 4-64 (281) 421 2dgu_A Heterogeneous nuclear r 31.5 20 0.00083 15.4 2.0 23 118-140 12-34 (103) 422 1xdi_A RV3303C-LPDA; reductase 31.5 21 0.00088 15.3 2.1 32 49-80 3-38 (499) 423 2ad9_A Polypyrimidine tract-bi 31.4 14 0.00057 16.5 1.1 24 117-140 31-54 (119) 424 3afn_B A1-R, 4-deoxy-L-erythro 31.4 24 0.001 14.9 4.5 62 46-108 5-70 (258) 425 1sjq_A Polypyrimidine tract-bi 31.4 21 0.00088 15.3 2.1 24 117-140 16-39 (105) 426 2dhx_A Poly (ADP-ribose) polym 31.4 17 0.00073 15.8 1.7 49 119-167 10-68 (104) 427 2f3j_A RNA and export factor b 31.3 15 0.00065 16.1 1.4 21 120-140 91-111 (177) 428 2div_A TRNA selenocysteine ass 31.3 22 0.00091 15.2 2.2 24 118-141 10-33 (99) 429 2dnm_A SRP46 splicing factor; 31.1 17 0.0007 15.9 1.5 21 120-140 16-36 (103) 430 3d2w_A TAR DNA-binding protein 31.1 17 0.00071 15.9 1.6 22 119-140 13-34 (89) 431 2cpe_A RNA-binding protein EWS 30.9 22 0.00093 15.1 2.2 24 117-140 15-38 (113) 432 1bdb_A CIS-biphenyl-2,3-dihydr 30.8 25 0.0011 14.8 5.1 59 46-108 3-64 (277) 433 2cq4_A RNA binding motif prote 30.7 15 0.00063 16.2 1.3 22 119-140 27-48 (114) 434 2ytc_A PRE-mRNA-splicing facto 30.7 14 0.0006 16.3 1.1 23 118-140 13-35 (85) 435 2dgv_A HnRNP M, heterogeneous 30.6 22 0.00093 15.1 2.1 22 119-140 10-31 (92) 436 2cq3_A RNA-binding protein 9; 30.4 18 0.00076 15.7 1.6 21 120-140 18-38 (103) 437 1k2w_A Sorbitol dehydrogenase; 30.4 25 0.0011 14.8 4.2 59 46-108 3-64 (256) 438 3c4a_A Probable tryptophan hyd 30.4 25 0.0011 14.8 2.8 34 50-83 2-38 (381) 439 2cqh_A IGF-II mRNA-binding pro 30.4 16 0.00068 16.0 1.4 21 120-140 11-31 (93) 440 3ex7_B RNA-binding protein 8A; 30.4 23 0.00096 15.0 2.2 23 118-140 23-45 (126) 441 1n4w_A CHOD, cholesterol oxida 30.3 24 0.001 14.9 2.3 31 49-80 6-38 (504) 442 2do0_A HnRNP M, heterogeneous 30.3 18 0.00074 15.8 1.6 22 119-140 17-38 (114) 443 2cpz_A CUG triplet repeat RNA- 30.3 16 0.00069 15.9 1.4 22 119-140 27-48 (115) 444 1xkq_A Short-chain reductase f 30.3 26 0.0011 14.8 3.9 62 46-108 4-71 (280) 445 2dgp_A Bruno-like 4, RNA bindi 30.1 19 0.00078 15.6 1.6 21 120-140 16-36 (106) 446 1x4h_A RNA-binding protein 28; 30.0 22 0.00091 15.2 2.0 23 118-140 16-38 (111) 447 3fg2_P Putative rubredoxin red 30.0 26 0.0011 14.7 2.7 35 47-82 141-177 (404) 448 2e4g_A Tryptophan halogenase; 29.9 26 0.0011 14.7 2.6 34 48-81 25-62 (550) 449 2e5j_A Methenyltetrahydrofolat 29.8 25 0.0011 14.8 2.3 22 119-140 21-42 (97) 450 2e44_A Insulin-like growth fac 29.7 16 0.00069 16.0 1.3 23 119-141 17-39 (96) 451 2hvz_A Splicing factor, argini 29.7 18 0.00074 15.8 1.5 20 121-140 4-23 (101) 452 1fht_A U1A117, U1 small nuclea 29.7 11 0.00045 17.1 0.4 21 118-138 9-29 (116) 453 2adc_A Polypyrimidine tract-bi 29.6 26 0.0011 14.7 2.8 21 119-139 153-173 (229) 454 3ksu_A 3-oxoacyl-acyl carrier 29.4 26 0.0011 14.7 4.6 62 46-108 9-76 (262) 455 1x5t_A Splicing factor 3B subu 29.4 26 0.0011 14.7 2.3 21 120-140 8-28 (96) 456 2weu_A Tryptophan 5-halogenase 29.4 22 0.00093 15.1 1.9 32 49-80 3-38 (511) 457 1s79_A Lupus LA protein; RRM, 29.2 26 0.0011 14.7 2.3 24 118-141 12-35 (103) 458 2a3j_A U1 small nuclear ribonu 28.8 19 0.00082 15.5 1.6 20 119-138 31-50 (127) 459 1wex_A Hypothetical protein (r 28.7 12 0.00051 16.7 0.5 25 116-140 14-38 (104) 460 2err_A Ataxin-2-binding protei 28.5 21 0.00086 15.3 1.6 22 119-140 31-52 (109) 461 3bs9_A Nucleolysin TIA-1 isofo 28.4 22 0.00093 15.2 1.8 21 120-140 9-29 (87) 462 2qa1_A PGAE, polyketide oxygen 28.4 25 0.001 14.8 2.0 36 46-82 9-46 (500) 463 2fc9_A NCL protein; structure 28.3 19 0.0008 15.5 1.5 23 117-139 15-37 (101) 464 2cph_A RNA binding motif prote 28.3 21 0.00087 15.3 1.6 22 119-140 17-38 (107) 465 2hgl_A HNRPF protein, heteroge 28.3 17 0.00072 15.8 1.2 22 119-140 46-67 (136) 466 1wf0_A TDP-43, TAR DNA-binding 28.1 19 0.00082 15.5 1.5 23 118-140 6-28 (88) 467 2hgn_A Heterogeneous nuclear r 28.0 19 0.00082 15.5 1.4 22 119-140 48-69 (139) 468 1x5o_A RNA binding motif, sing 27.9 14 0.0006 16.3 0.7 21 120-140 28-48 (114) 469 2dng_A Eukaryotic translation 27.9 18 0.00074 15.8 1.2 22 119-140 17-38 (103) 470 3o38_A Short chain dehydrogena 27.9 28 0.0012 14.5 4.6 63 45-108 19-86 (266) 471 3dfz_A SIRC, precorrin-2 dehyd 27.7 28 0.0012 14.5 4.0 60 46-110 29-90 (223) 472 3nmr_A Cugbp ELAV-like family 27.6 22 0.00092 15.2 1.6 23 118-140 96-118 (175) 473 2a8x_A Dihydrolipoyl dehydroge 27.5 29 0.0012 14.5 2.3 13 51-63 6-18 (464) 474 3cgv_A Geranylgeranyl reductas 27.5 29 0.0012 14.5 2.4 32 50-82 6-39 (397) 475 2cuy_A Malonyl COA-[acyl carri 27.4 29 0.0012 14.4 3.5 12 54-65 86-97 (305) 476 1whw_A Hypothetical protein ri 27.3 22 0.00093 15.1 1.6 21 120-140 11-31 (99) 477 2dnp_A RNA-binding protein 14; 27.3 22 0.00093 15.1 1.6 22 120-141 12-33 (90) 478 1kyq_A Met8P, siroheme biosynt 27.2 29 0.0012 14.4 4.0 42 46-87 11-55 (274) 479 2dnz_A Probable RNA-binding pr 26.8 28 0.0012 14.5 2.1 21 120-140 8-28 (95) 480 1oo0_B CG8781-PA, drosophila Y 26.8 29 0.0012 14.4 2.3 22 119-140 28-49 (110) 481 1fxl_A Paraneoplastic encephal 26.7 23 0.00097 15.0 1.6 21 120-140 91-111 (167) 482 2qfj_A FBP-interacting repress 26.7 23 0.00097 15.0 1.6 21 120-140 128-148 (216) 483 1wi8_A EIF-4B, eukaryotic tran 26.6 17 0.00073 15.8 1.0 22 119-140 17-38 (104) 484 3grk_A Enoyl-(acyl-carrier-pro 26.6 30 0.0012 14.4 4.4 63 43-107 26-93 (293) 485 1njr_A 32.1 kDa protein in ADH 26.5 24 0.001 14.9 1.7 51 58-108 2-58 (284) 486 1wez_A HnRNP H', FTP-3, hetero 26.5 17 0.00071 15.9 0.9 24 117-140 15-38 (102) 487 2jhf_A Alcohol dehydrogenase E 26.2 30 0.0013 14.3 5.4 53 37-89 181-235 (374) 488 1ebd_A E3BD, dihydrolipoamide 26.1 30 0.0013 14.3 2.5 28 51-79 6-35 (455) 489 1fjc_A Nucleolin RBD2, protein 26.0 25 0.001 14.8 1.7 24 117-140 16-39 (96) 490 3cw1_K U1 small nuclear ribonu 26.0 23 0.00097 15.0 1.5 22 119-140 104-125 (216) 491 2xnq_A Nuclear polyadenylated 25.9 23 0.00098 15.0 1.6 21 120-140 25-46 (97) 492 2jrs_A RNA-binding protein 39; 25.9 21 0.00089 15.3 1.3 21 120-140 29-49 (108) 493 3n9u_C Cleavage and polyadenyl 25.9 24 0.001 14.9 1.6 22 119-140 57-78 (156) 494 2qa2_A CABE, polyketide oxygen 25.7 31 0.0013 14.3 2.3 35 47-82 11-47 (499) 495 1vl8_A Gluconate 5-dehydrogena 25.6 31 0.0013 14.2 4.3 62 46-108 19-84 (267) 496 2dgs_A DAZ-associated protein 25.5 21 0.00086 15.3 1.2 21 120-140 13-33 (99) 497 2dis_A Unnamed protein product 25.4 26 0.0011 14.7 1.7 22 120-141 11-32 (109) 498 3kzv_A Uncharacterized oxidore 25.2 31 0.0013 14.2 3.4 58 48-108 2-63 (254) 499 3jsk_A Cypbp37 protein; octame 25.0 16 0.00066 16.1 0.5 53 30-82 61-116 (344) 500 3iwa_A FAD-dependent pyridine 25.0 32 0.0013 14.2 3.4 34 49-82 4-40 (472) No 1 >3gru_A Dimethyladenosine transferase; rossman fold, ribosomal assembly S-adenosyl-L-methionine, rRNA, methyltransferase, RNA-binding; HET: AMP; 1.60A {Methanocaldococcus jannaschii} PDB: 3grr_A* 3grv_A* 3gry_A* 3fyd_A 3fyc_A* Probab=100.00 E-value=0 Score=535.08 Aligned_cols=253 Identities=31% Similarity=0.471 Sum_probs=223.8 Q ss_pred HCCCCCCCCCCCCCCCCHHHHHHHHHHCCCCCCCEEEEECCCCCHHHHHHHHCCCCEEEEECCCCCCHHHHHHHHHHHHC Q ss_conf 81898433658411239899999999719899987999758988234677502352599842554303688787532200 Q gi|254780398|r 16 HYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQHPN 95 (284) Q Consensus 16 ~~~~~p~k~lGQnFL~d~~i~~~iv~~~~~~~~~~VlEIGpG~G~LT~~Ll~~~~~~v~aiEiD~~~~~~l~~~~~~~~~ 95 (284) ++.++|||+||||||+|++++++||+.+++.++|.|||||||+|+||..|+++ +++|+|||+|++++++|++.+...+ T Consensus 19 ~~mi~pkK~lGQNFL~d~~i~~kIv~~~~~~~~d~VlEIGpG~G~LT~~Ll~~-~~~v~aiEiD~~l~~~L~~~~~~~~- 96 (295) T 3gru_A 19 SHMFKPKKKLGQCFLIDKNFVNKAVESANLTKDDVVLEIGLGKGILTEELAKN-AKKVYVIEIDKSLEPYANKLKELYN- 96 (295) T ss_dssp -----------CCEECCHHHHHHHHHHTTCCTTCEEEEECCTTSHHHHHHHHH-SSEEEEEESCGGGHHHHHHHHHHCS- T ss_pred CCCCCCCCCCCCCCCCCHHHHHHHHHHCCCCCCCEEEEECCCHHHHHHHHHHC-CCCEEEEEECHHHHHHHHHHHHHCC- T ss_conf 75724888778230289999999999638999995999799746999999816-8966999988799999997676427- Q ss_pred CCCCCHHHHCCCCHHHHCCCCCCEEEEECCCHHHHHHHHHHHHHHHCCCCCCCHHHHEEEHHHHHHHHHCCCHHHHHHHH Q ss_conf 12200000001431552133222011202322467889999985201000000110203344788753012312332345 Q gi|254780398|r 96 RLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLS 175 (284) Q Consensus 96 ~~~ii~~Dal~~d~~~~~~~~~~~~vvgNLPYnIss~Il~~ll~~~~~~~~~~~~vlmvQkEvA~Rl~a~pg~k~Yg~LS 175 (284) +++++++||+++|++.+ .+++|||||||||||+|+++|+... +..+++|+|||||+||+|+||+|+||+|| T Consensus 97 n~~ii~~D~l~~d~~~~----~~~~vv~NLPYnIss~il~~l~~~~-----~~~~vlmvQkEvAeRi~A~pgsk~Yg~LS 167 (295) T 3gru_A 97 NIEIIWGDALKVDLNKL----DFNKVVANLPYQISSPITFKLIKRG-----FDLAVLMYQYEFAKRMVAAAGTKDYGRLS 167 (295) T ss_dssp SEEEEESCTTTSCGGGS----CCSEEEEECCGGGHHHHHHHHHHHC-----CSEEEEEEEHHHHHHHHCCTTSTTCSHHH T ss_pred CEEEEECCCCCCCHHHC----CCCEEEEEEHHHHCCHHHHCCCCCC-----CCCEEEEEHHHHHHHHHCCCCCHHHHHHH T ss_conf 73688512103771333----7553786202642541132045555-----54002221389999974279980256777 Q ss_pred HHHCCCCCEEEECCCCCCEECCCCCCCEEEEEECCCCCCC-CCCHHHHHHHHHHHHCCCCHHHHHHHHHCCC-----HH- Q ss_conf 4320133201200011000010578757887301258855-3476789999999972731389998763181-----78- Q gi|254780398|r 176 VLTGWRTKATMMFDISPHVFFPSPKVTSTVIHFIPHLNPI-PCCLESLKKITQEAFGKRRKTLRQSLKRLGG-----EN- 248 (284) Q Consensus 176 v~~q~~~~v~~~~~V~~~~F~P~PkVdS~vi~l~pk~~~~-~~~~~~~~~~~~~~F~~RRK~l~~~L~~~~~-----~~- 248 (284) |++|++|+++++++|||+||+|+|||||+||+++|++.+. ..+.+.|+++++.+|++|||+|+|+|+.... .+ T Consensus 168 V~~q~~~~v~~~~~V~~~~F~P~PKVdSavv~l~p~~~~~~~~~~~~f~~~vr~~F~~RRK~l~n~L~~~~~~~~~~k~~ 247 (295) T 3gru_A 168 VAVQSRADVEIVAKVPPSAFYPKPKVYSAIVKIKPNKGKYHIENENFFDDFLRAIFQHRNKSVRKALIDSSKELNYNKDE 247 (295) T ss_dssp HHHHTTEEEEEEEEECGGGEESCCSSCEEEEEEEECHHHHCCSCHHHHHHHHHHHHTTTTSBHHHHHHHTGGGGTCCHHH T ss_pred HHHHHHEEEEEEEEECHHHCCCCCCEEEEEEEEEECCCCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCHHH T ss_conf 77652101589258887877899973089999984688634235889999999988142147999988765541789999 Q ss_pred ---HHHH-------CCCCCCCCHHCCCHHHHHHHHHHHHHC Q ss_conf ---9997-------877746571208999999999998636 Q gi|254780398|r 249 ---LLHQ-------AGIETNLRAENLSIEDFCRITNILTDN 279 (284) Q Consensus 249 ---~l~~-------~~i~~~~R~e~Ls~~~~~~L~~~l~~~ 279 (284) +++. .+..++.|||+||++||++|++.+.+. T Consensus 248 ~~~~l~~~l~~~~~~~~~~~~R~e~Ls~e~f~~L~~~l~~~ 288 (295) T 3gru_A 248 MKKILEDFLNTNSEIKNLINEKVFKLSVKDIVNLSNEFYRF 288 (295) T ss_dssp HHHHHHHHHTTCHHHHHHHTSBGGGSCHHHHHHHHHHHHHH T ss_pred HHHHHHHHHCCCCCCCCCCCCCHHHCCHHHHHHHHHHHHHH T ss_conf 99999974044334656643472329999999999999999 No 2 >3fut_A Dimethyladenosine transferase; methyltransferase, dimethyltransferase, dual-specific methyltransferase, 16S rRNA methyltransferase; 1.52A {Thermus thermophilus HB8} PDB: 3fuu_A* 3fuv_A 3fuw_A* 3fux_A* Probab=100.00 E-value=0 Score=522.60 Aligned_cols=259 Identities=35% Similarity=0.577 Sum_probs=233.3 Q ss_pred CCHHHHHHHHHCCCCCCCCCCCCCCCCHHHHHHHHHHCCCCCCCEEEEECCCCCHHHHHHHHCCCCEEEEECCCCCCHHH Q ss_conf 84479999998189843365841123989999999971989998799975898823467750235259984255430368 Q gi|254780398|r 6 KSHSLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPI 85 (284) Q Consensus 6 ~~~~i~~ll~~~~~~p~k~lGQnFL~d~~i~~~iv~~~~~~~~~~VlEIGpG~G~LT~~Ll~~~~~~v~aiEiD~~~~~~ 85 (284) ..+++|++++.++++|+|+||||||+|++++++|++.+++. +|.|||||||+|+||+.|++.+ ++|+|||+|+++++. T Consensus 6 ~p~~~r~~l~~~~~~~kK~lGQnFL~d~~i~~~iv~~~~~~-~~~VlEIGpG~G~LT~~L~~~~-~~v~avE~D~~l~~~ 83 (271) T 3fut_A 6 SPQSVRALLERHGLFADKRFGQNFLVSEAHLRRIVEAARPF-TGPVFEVGPGLGALTRALLEAG-AEVTAIEKDLRLRPV 83 (271) T ss_dssp CHHHHHHHHHHTTCCCSTTSSCCEECCHHHHHHHHHHHCCC-CSCEEEECCTTSHHHHHHHHTT-CCEEEEESCGGGHHH T ss_pred CHHHHHHHHHHCCCCCCCCCCCCCCCCHHHHHHHHHHHCCC-CCCEEEECCCCCHHHHHHHHCC-CCEEEEEECHHHHHH T ss_conf 87999999997699988777845038989999999965899-9988996797719999999608-967999837067888 Q ss_pred HHHHHHHHHCCCCCCHHHHCCCCHHHHCCCCCCEEEEECCCHHHHHHHHHHHHHHHCCCCCCCHHHHEEEHHHHHHHHHC Q ss_conf 87875322001220000000143155213322201120232246788999998520100000011020334478875301 Q gi|254780398|r 86 LKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQ 165 (284) Q Consensus 86 l~~~~~~~~~~~~ii~~Dal~~d~~~~~~~~~~~~vvgNLPYnIss~Il~~ll~~~~~~~~~~~~vlmvQkEvA~Rl~a~ 165 (284) |++.+...+ ..++++|++..++.. ...+++|||||||||||+|+.+++.... +..|++|+|||||+|++|+ T Consensus 84 L~~~~~~~~--~~~i~~~~~~~~~~~---~~~~~~vv~NLPY~Ist~ii~~ll~~~~----~~~~vlm~QkEvA~Ri~a~ 154 (271) T 3fut_A 84 LEETLSGLP--VRLVFQDALLYPWEE---VPQGSLLVANLPYHIATPLVTRLLKTGR----FARLVFLVQKEVAERMTAR 154 (271) T ss_dssp HHHHTTTSS--EEEEESCGGGSCGGG---SCTTEEEEEEECSSCCHHHHHHHHHHCC----EEEEEEEEEHHHHHHHTCC T ss_pred HHHHHHHCC--HHHHHHHHHHHHHHC---CCCCEEEECCCCHHHHHHHHHHHCCCCC----CCCCEEEEHHHHHHHHHCC T ss_conf 875433301--033346555310330---7764267236521326799986034565----5441343108999998637 Q ss_pred CCHHHHHHHHHHHCCCCCEEEECCCCCCEECCCCCCCEEEEEECCCCCCCCCCHHHHHHHHHHHHCCCCHHHHHHHHHCC Q ss_conf 23123323454320133201200011000010578757887301258855347678999999997273138999876318 Q gi|254780398|r 166 KNSPHYGRLSVLTGWRTKATMMFDISPHVFFPSPKVTSTVIHFIPHLNPIPCCLESLKKITQEAFGKRRKTLRQSLKRLG 245 (284) Q Consensus 166 pg~k~Yg~LSv~~q~~~~v~~~~~V~~~~F~P~PkVdS~vi~l~pk~~~~~~~~~~~~~~~~~~F~~RRK~l~~~L~~~~ 245 (284) ||+++||+||+++|++|+++++++|||++|+|+|||||+||+++|++.. +.+.++++++.+|++|||+|+|+|++.. T Consensus 155 ~~~k~y~~lSv~~q~~~~~~~~~~V~~~~F~P~PkVdS~vv~l~~k~~~---~~~~~~~~v~~~F~~RRK~l~n~L~~~~ 231 (271) T 3fut_A 155 PKTPAYGVLTLRVAHHAVAERLFDLPPGAFFPPPKVWSSLVRLTPTGAL---DDPGLFRLVEAAFGKRRKTLLNALAAAG 231 (271) T ss_dssp TTSTTCSHHHHHHHHHEEEEEEEEECGGGEESCCSSCEEEEEEEECSCC---CCHHHHHHHHHHTSSTTSCHHHHHHHTT T ss_pred CCCCCCCCCHHHHHHHHHCCCCCCCCCCCCCCCCCEEEEEEEECCCCCC---CHHHHHHHHHHHHHHHHHHHHHHHHHHC T ss_conf 9975658246776663403546545887899999536888853256655---6179999999999866579999987636 Q ss_pred -C----HHHHHHCCCCCCCCHHCCCHHHHHHHHHHHHH Q ss_conf -1----78999787774657120899999999999863 Q gi|254780398|r 246 -G----ENLLHQAGIETNLRAENLSIEDFCRITNILTD 278 (284) Q Consensus 246 -~----~~~l~~~~i~~~~R~e~Ls~~~~~~L~~~l~~ 278 (284) + .++++++|++++.|||+|+++||++|++.|++ T Consensus 232 ~~~~~~~~~l~~~~i~~~~R~e~Ls~~~~~~L~~~l~~ 269 (271) T 3fut_A 232 YPKARVEEALRALGLPPRVRAEELDLEAFRRLREGLEG 269 (271) T ss_dssp CCHHHHHHHHHHTTCCTTCCGGGCCHHHHHHHHHHHC- T ss_pred CCHHHHHHHHHHCCCCCCCCHHHCCHHHHHHHHHHHHC T ss_conf 88889999999869796639154999999999999865 No 3 >1zq9_A Probable dimethyladenosine transferase; SGC, structural genomics, structural genomics consortium; HET: SAM; 1.90A {Homo sapiens} SCOP: c.66.1.24 Probab=100.00 E-value=0 Score=519.15 Aligned_cols=248 Identities=27% Similarity=0.451 Sum_probs=225.2 Q ss_pred CCCCCCCCCCCCHHHHHHHHHHCCCCCCCEEEEECCCCCHHHHHHHHCCCCEEEEECCCCCCHHHHHHHHHHH--HCCCC Q ss_conf 4336584112398999999997198999879997589882346775023525998425543036887875322--00122 Q gi|254780398|r 21 PKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQH--PNRLE 98 (284) Q Consensus 21 p~k~lGQnFL~d~~i~~~iv~~~~~~~~~~VlEIGpG~G~LT~~Ll~~~~~~v~aiEiD~~~~~~l~~~~~~~--~~~~~ 98 (284) +.|.||||||+|++++++||+.+++.++|.|||||||+|+||+.|++++ ++|+|||+|+++++.|++.+... .++++ T Consensus 2 ~n~~LGQnFL~d~~i~~~Iv~~~~~~~~d~VlEIGPG~G~LT~~Ll~~~-~~v~aiE~D~~l~~~L~~~~~~~~~~~~~~ 80 (285) T 1zq9_A 2 SNTGIGQHILKNPLIINSIIDKAALRPTDVVLEVGPGTGNMTVKLLEKA-KKVVACELDPRLVAELHKRVQGTPVASKLQ 80 (285) T ss_dssp ------CCEECCHHHHHHHHHHTCCCTTCEEEEECCTTSTTHHHHHHHS-SEEEEEESCHHHHHHHHHHHTTSTTGGGEE T ss_pred CCCCCCCCCCCCHHHHHHHHHHHCCCCCCEEEEECCCCHHHHHHHHHCC-CCEEEEEECHHHHHHHHHHHHCCCCCCCEE T ss_conf 9998684607798999999997089999979996897219999998049-966999987899999998762012100344 Q ss_pred CCHHHHCCCCHHHHCCCCCCEEEEECCCHHHHHHHHHHHHHHHCCCCCCCHHHHEEEHHHHHHHHHCCCHHHHHHHHHHH Q ss_conf 00000001431552133222011202322467889999985201000000110203344788753012312332345432 Q gi|254780398|r 99 IIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLT 178 (284) Q Consensus 99 ii~~Dal~~d~~~~~~~~~~~~vvgNLPYnIss~Il~~ll~~~~~~~~~~~~vlmvQkEvA~Rl~a~pg~k~Yg~LSv~~ 178 (284) ++++|++++|++. +++|||||||||||+|+.+++.+.. .+..|++|+|||||+||+|+||+++||+|||++ T Consensus 81 ii~~D~l~~d~~~------~~~vVgNLPYnIss~ii~~~~~~~~---~~~~~vlm~QkEvA~Rl~A~pgsk~yg~LSv~~ 151 (285) T 1zq9_A 81 VLVGDVLKTDLPF------FDTCVANLPYQISSPFVFKLLLHRP---FFRCAILMFQREFALRLVAKPGDKLYCRLSINT 151 (285) T ss_dssp EEESCTTTSCCCC------CSEEEEECCGGGHHHHHHHHHHCSS---CCSEEEEEEEHHHHHHHHCCTTCTTCSHHHHHH T ss_pred EECHHHHHCHHHH------HHHEECCCHHHHHHHHHHHHHHCCC---CCCEEEEEECHHHHHHHHHCCCCCCCCCHHHHH T ss_conf 5406654110554------4321102216568899999875176---421245762189999997047997324103331 Q ss_pred CCCCCEEEECCCCCCEECCCCCCCEEEEEECCCCCCCCCCHHHHHHHHHHHHCCCCHHHHHHHHHCCC------------ Q ss_conf 01332012000110000105787578873012588553476789999999972731389998763181------------ Q gi|254780398|r 179 GWRTKATMMFDISPHVFFPSPKVTSTVIHFIPHLNPIPCCLESLKKITQEAFGKRRKTLRQSLKRLGG------------ 246 (284) Q Consensus 179 q~~~~v~~~~~V~~~~F~P~PkVdS~vi~l~pk~~~~~~~~~~~~~~~~~~F~~RRK~l~~~L~~~~~------------ 246 (284) |++|+++++++|||++|+|+|||||+||+++|++.+...+.+.|+++++.+|++|||+|+|+|++... T Consensus 152 q~~~~v~~~~~V~~~~F~P~PkVdSavv~l~pk~~~~~~~~~~~~~~v~~~F~~RRK~l~n~Lk~~~~~~~l~~~~~~~~ 231 (285) T 1zq9_A 152 QLLARVDHLMKVGKNNFRPPPKVESSVVRIEPKNPPPPINFQEWDGLVRITFVRKNKTLSAAFKSSAVQQLLEKNYRIHC 231 (285) T ss_dssp HHHEEEEEEEEECGGGEESCCSSCEEEEEEEECSSCCSCCHHHHHHHHHHHHTTTTSBHHHHTTSHHHHHHHHHHHHHHH T ss_pred HHHHHEEEEEEECHHHCCCCCCCCEEEEEEECCCCCCCCHHHHHHHHHHHHHCCHHHHHHHHHHHCCHHHHHHHHHHHHC T ss_conf 01101115678467984138873179999855788862219999999999868406448988713020778877478755 Q ss_pred -----------------HHHHHHCCCCCCCCHHCCCHHHHHHHHHHHHHC Q ss_conf -----------------789997877746571208999999999998636 Q gi|254780398|r 247 -----------------ENLLHQAGIETNLRAENLSIEDFCRITNILTDN 279 (284) Q Consensus 247 -----------------~~~l~~~~i~~~~R~e~Ls~~~~~~L~~~l~~~ 279 (284) ..+++.+|++ +.|||+||++||++|++.|.+. T Consensus 232 ~i~~~~rpe~l~~~~~i~~~l~~~g~~-~~R~E~Ls~~~f~~L~~~l~~~ 280 (285) T 1zq9_A 232 SVHNIIIPEDFSIADKIQQILTSTGFS-DKRARSMDIDDFIRLLHGFNAE 280 (285) T ss_dssp HHHTCCCCTTCCHHHHHHHHHHHHTCT-TCBGGGCCHHHHHHHHHHHHTT T ss_pred CCCCCCCCCCCCHHHHHHHHHHHCCCC-CCCHHHCCHHHHHHHHHHHHHC T ss_conf 888544732056999999999856997-7880449999999999999975 No 4 >1qyr_A KSGA, high level kasugamycin resistance protein, S-; adenosine dimethyltransferase, rRNA modification, transferase, translation; 2.10A {Escherichia coli} SCOP: c.66.1.24 Probab=100.00 E-value=0 Score=516.07 Aligned_cols=248 Identities=35% Similarity=0.579 Sum_probs=231.3 Q ss_pred CCCCCCHHHHHHHHHHCCCCCCCEEEEECCCCCHHHHHHHHCCCCEEEEECCCCCCHHHHHHHHHHHHCCCCCCHHHHCC Q ss_conf 41123989999999971989998799975898823467750235259984255430368878753220012200000001 Q gi|254780398|r 27 QNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALK 106 (284) Q Consensus 27 QnFL~d~~i~~~iv~~~~~~~~~~VlEIGpG~G~LT~~Ll~~~~~~v~aiEiD~~~~~~l~~~~~~~~~~~~ii~~Dal~ 106 (284) ||||+|++++++||+.+++.++|.|||||||+|+||..|++++ ++|+|||+|+++++.|++.+...+ +++++++|+|+ T Consensus 1 QnFL~d~~i~~~iv~~~~~~~~d~vlEIGpG~G~LT~~Ll~~~-~~v~avE~D~~l~~~L~~~~~~~~-~~~ii~~D~l~ 78 (252) T 1qyr_A 1 QNFLNDQFVIDSIVSAINPQKGQAMVEIGPGLAALTEPVGERL-DQLTVIELDRDLAARLQTHPFLGP-KLTIYQQDAMT 78 (252) T ss_dssp CCEECCHHHHHHHHHHHCCCTTCCEEEECCTTTTTHHHHHTTC-SCEEEECCCHHHHHHHHTCTTTGG-GEEEECSCGGG T ss_pred CCCCCCHHHHHHHHHHCCCCCCCEEEEECCCCCHHHHHHHHCC-CCEEEEEECCHHHHHHHHHHHCCC-CEEEEECHHHH T ss_conf 9852788999999984489997969998998729999998168-976999962128899998763177-62565011455 Q ss_pred CCHHHHCC-CCCCEEEEECCCHHHHHHHHHHHHHHHCCCCCCCHHHHEEEHHHHHHHHHCCCHHHHHHHHHHHCCCCCEE Q ss_conf 43155213-32220112023224678899999852010000001102033447887530123123323454320133201 Q gi|254780398|r 107 VDFEKFFN-ISSPIRIIANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKAT 185 (284) Q Consensus 107 ~d~~~~~~-~~~~~~vvgNLPYnIss~Il~~ll~~~~~~~~~~~~vlmvQkEvA~Rl~a~pg~k~Yg~LSv~~q~~~~v~ 185 (284) +|+.++.. .+.|++|||||||||||+|+++++.... .++.|++|+|||||+||+|+||+++||+|||++|++|+++ T Consensus 79 ~~~~~~~~~~~~~~~vvgNLPY~Ist~il~~ll~~~~---~~~~~v~mvQkEvA~Ri~A~~gsk~yg~lsv~~q~~~~~~ 155 (252) T 1qyr_A 79 FNFGELAEKMGQPLRVFGNLPYNISTPLMFHLFSYTD---AIADMHFMLQKEVVNRLVAGPNSKAYGRLSVMAQYYCNVI 155 (252) T ss_dssp CCHHHHHHHHTSCEEEEEECCTTTHHHHHHHHHTTGG---GEEEEEEEEEHHHHHHHHCCTTSTTCSHHHHHHHHHEEEE T ss_pred HCHHHHHCCCCCCEEEEECCHHHHHHHHHHHHHCCCC---CEEEEEEEEEHHHHHHHHCCCCCHHHHHHHHHHHHCCCEE T ss_conf 2321221036897599946628899999997511366---3000247776899888834799835536777533111202 Q ss_pred EECCCCCCEECCCCCCCEEEEEECCCCCCC--CCCHHHHHHHHHHHHCCCCHHHHHHHHHCCCHHHHHHCCCCCCCCHHC Q ss_conf 200011000010578757887301258855--347678999999997273138999876318178999787774657120 Q gi|254780398|r 186 MMFDISPHVFFPSPKVTSTVIHFIPHLNPI--PCCLESLKKITQEAFGKRRKTLRQSLKRLGGENLLHQAGIETNLRAEN 263 (284) Q Consensus 186 ~~~~V~~~~F~P~PkVdS~vi~l~pk~~~~--~~~~~~~~~~~~~~F~~RRK~l~~~L~~~~~~~~l~~~~i~~~~R~e~ 263 (284) ++++|||++|+|+|||||++|+++|++++. ..+.+.++.+++.+|++|||+|+|+|+.....++++++|++++.|||+ T Consensus 156 ~~~~V~~~~F~P~PkVdS~vv~l~~~~~~~~~~~~~~~~~~~v~~~F~~rRK~l~n~L~~~~~~~~l~~~~i~~~~R~e~ 235 (252) T 1qyr_A 156 PVLEVPPSAFTPPPKVDSAVVRLVPHATMPHPVKDVRVLSRITTEAFNQRRKTIRNSLGNLFSVEVLTGMGIDPAMRAEN 235 (252) T ss_dssp EEEEECGGGEESCCSSCEEEEEEEECSSCSSCCSCHHHHHHHHHHHHHTTTSBHHHHTTTTCCHHHHHHTTCCTTSBGGG T ss_pred EEEEECHHHCCCCCCCEEEEEEEEECCCCCCCHHHHHHHHHHHHHHHHCCHHHHHHHHHHHCCHHHHHHCCCCCCCCHHH T ss_conf 52388546546599840677998855878752068999999999998545288999874044199999779882339333 Q ss_pred CCHHHHHHHHHHHHHC Q ss_conf 8999999999998636 Q gi|254780398|r 264 LSIEDFCRITNILTDN 279 (284) Q Consensus 264 Ls~~~~~~L~~~l~~~ 279 (284) |+++||++|++.+.++ T Consensus 236 Ls~~~~~~L~~~l~~~ 251 (252) T 1qyr_A 236 ISVAQYCQMANYLAEN 251 (252) T ss_dssp SCHHHHHHHHHHHHHH T ss_pred CCHHHHHHHHHHHHHC T ss_conf 9999999999999840 No 5 >2h1r_A Dimethyladenosine transferase, putative; SGC toronto dimethyladenosine transferase, structural genomics, structural genomics consortium; 1.89A {Plasmodium falciparum} Probab=100.00 E-value=0 Score=510.30 Aligned_cols=253 Identities=30% Similarity=0.451 Sum_probs=226.8 Q ss_pred HCCCCCCCCCCCCCCCCHHHHHHHHHHCCCCCCCEEEEECCCCCHHHHHHHHCCCCEEEEECCCCCCHHHHHHHHHHH-H Q ss_conf 818984336584112398999999997198999879997589882346775023525998425543036887875322-0 Q gi|254780398|r 16 HYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQH-P 94 (284) Q Consensus 16 ~~~~~p~k~lGQnFL~d~~i~~~iv~~~~~~~~~~VlEIGpG~G~LT~~Ll~~~~~~v~aiEiD~~~~~~l~~~~~~~-~ 94 (284) +.+...++.||||||+|++++++||+.+++.++|.|||||||+|+||..|++++ ++|+|||+|+++++.|++.+... . T Consensus 11 ~~~~~~~~~LGQnFL~D~~i~~kIv~~~~~~~~d~VLEIGPG~G~LT~~Ll~~~-~~v~aiE~D~~l~~~L~e~~~~~~~ 89 (299) T 2h1r_A 11 SSGRENLYFQGQHLLKNPGILDKIIYAAKIKSSDIVLEIGCGTGNLTVKLLPLA-KKVITIDIDSRMISEVKKRCLYEGY 89 (299) T ss_dssp ------------CEECCHHHHHHHHHHHCCCTTCEEEEECCTTSTTHHHHTTTS-SEEEEECSCHHHHHHHHHHHHHTTC T ss_pred CCCCCCCCCCCCCCCCCHHHHHHHHHHCCCCCCCEEEEECCCHHHHHHHHHHCC-CEEEEEECCCHHHHHHHHHHHHCCC T ss_conf 556788887777437898999999984589998989996897279999998239-9079997770899999975432133 Q ss_pred CCCCCCHHHHCCCCHHHHCCCCCCEEEEECCCHHHHHHHHHHHHHHHCCCCCCCHHHHEEEHHHHHHHHHCCCHHHHHHH Q ss_conf 01220000000143155213322201120232246788999998520100000011020334478875301231233234 Q gi|254780398|r 95 NRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRL 174 (284) Q Consensus 95 ~~~~ii~~Dal~~d~~~~~~~~~~~~vvgNLPYnIss~Il~~ll~~~~~~~~~~~~vlmvQkEvA~Rl~a~pg~k~Yg~L 174 (284) .+++++++|++++++++ +++|||||||||||+|+++++... +.+..|++|+|||||+||+|+||+|+||+| T Consensus 90 ~~~~~i~~D~~~~~~~~------~~~vVgNLPY~ISs~ii~k~l~~~---~~~~~~vlmvQkEvA~Rl~A~pg~k~y~~L 160 (299) T 2h1r_A 90 NNLEVYEGDAIKTVFPK------FDVCTANIPYKISSPLIFKLISHR---PLFKCAVLMFQKEFAERMLANVGDSNYSRL 160 (299) T ss_dssp CCEEC----CCSSCCCC------CSEEEEECCGGGHHHHHHHHHHCS---SCCSEEEEEEEHHHHHHHTCCTTSTTCCHH T ss_pred CCCCCCCCCCCHHHCCC------CCEEECCCCHHHHHHHHHHHHHCC---CCCCCEEEEEEHHHHHHHHCCCCCCHHHHH T ss_conf 33332034420000245------434614788478999999976407---765544788609999987606894035577 Q ss_pred HHHHCCCCCEEEECCCCCCEECCCCCCCEEEEEECCCCCCCCCCHHHHHHHHHHHHCCCCHHHHHHHHHCC--------- Q ss_conf 54320133201200011000010578757887301258855347678999999997273138999876318--------- Q gi|254780398|r 175 SVLTGWRTKATMMFDISPHVFFPSPKVTSTVIHFIPHLNPIPCCLESLKKITQEAFGKRRKTLRQSLKRLG--------- 245 (284) Q Consensus 175 Sv~~q~~~~v~~~~~V~~~~F~P~PkVdS~vi~l~pk~~~~~~~~~~~~~~~~~~F~~RRK~l~~~L~~~~--------- 245 (284) ||++|++|+++.+++|||++|+|+|||||+||+|+|++.+...+.+.|+.+++.+|++|||+|+|+|++.. T Consensus 161 Sv~~q~~~~v~~~~~V~~~~F~P~PkVdSavi~l~pk~~~~~~~~~~~~~~vr~~F~~RRK~l~n~Lkk~~~~~~l~~~~ 240 (299) T 2h1r_A 161 TINVKLFCKVTKVCNVNRSSFNPPPKVDSVIVKLIPKESSFLTNFDEWDNLLRICFSRKRKTLHAIFKRNAVLNMLEHNY 240 (299) T ss_dssp HHHHHHHEEEEEEEEECGGGEESCCSSCEEEEEEEECGGGGGSCHHHHHHHHHHHHTTTTSBHHHHHTSHHHHHHHHHHH T ss_pred HHHHHHHHHHCEEEECCHHHCCCCCCCCEEEEEEECCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH T ss_conf 99998886414311317576738996136899973477777789999999999997441448898863400356667767 Q ss_pred -------------------CHHHHHHCCCCCCCCHHCCCHHHHHHHHHHHHHC Q ss_conf -------------------1789997877746571208999999999998636 Q gi|254780398|r 246 -------------------GENLLHQAGIETNLRAENLSIEDFCRITNILTDN 279 (284) Q Consensus 246 -------------------~~~~l~~~~i~~~~R~e~Ls~~~~~~L~~~l~~~ 279 (284) ..++++.++++ ++|||+|+++||++|++.+++. T Consensus 241 ~~~~~~~~~~~~~~~~~~~~~~~L~~~~i~-~~R~e~Ls~edf~~L~~~~~~~ 292 (299) T 2h1r_A 241 KNWCTLNKQVPVNFPFKKYCLDVLEHLDMC-EKRSINLDENDFLKLLLEFNKK 292 (299) T ss_dssp HHHHHHTTCCCCSSCHHHHHHHHHHHTTCT-TCBGGGCCHHHHHHHHHHHHHT T ss_pred HHHHHHCCCCCCCCCHHHHHHHHHHHCCCC-CCCCHHCCHHHHHHHHHHHHHC T ss_conf 777531201455533578999999856975-4780339999999999999975 No 6 >3ftd_A Dimethyladenosine transferase; KSGA, rossmann-like fold, RNA methyltransferase, mtase, antibiotic resistance, methyltransferase; 1.44A {Aquifex aeolicus VF5} PDB: 3ftc_A 3fte_A 3ftf_A* Probab=100.00 E-value=0 Score=511.87 Aligned_cols=246 Identities=35% Similarity=0.559 Sum_probs=226.5 Q ss_pred CCCCCCCCCCCCCCCHHHHHHHHHHCCCCCCCEEEEECCCCCHHHHHHHHCCCCEEEEECCCCCCHHHHHHHHHHHHCCC Q ss_conf 89843365841123989999999971989998799975898823467750235259984255430368878753220012 Q gi|254780398|r 18 KIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQHPNRL 97 (284) Q Consensus 18 ~~~p~k~lGQnFL~d~~i~~~iv~~~~~~~~~~VlEIGpG~G~LT~~Ll~~~~~~v~aiEiD~~~~~~l~~~~~~~~~~~ 97 (284) .+||||+||||||+|++++++||+.+++.++|.|||||||+|+||+.|+++++++|+|+|+|++++..|++.+. .++ T Consensus 2 mir~kk~lGQnFL~d~~~~~~iv~~~~~~~~d~VlEIGpG~G~LT~~Ll~~~~~~v~aiE~D~~l~~~l~~~~~---~~~ 78 (249) T 3ftd_A 2 MVRLKKSFGQHLLVSEGVLKKIAEELNIEEGNTVVEVGGGTGNLTKVLLQHPLKKLYVIELDREMVENLKSIGD---ERL 78 (249) T ss_dssp ------CCCSSCEECHHHHHHHHHHTTCCTTCEEEEEESCHHHHHHHHTTSCCSEEEEECCCHHHHHHHTTSCC---TTE T ss_pred CCCCCCCCCCCCCCCHHHHHHHHHHCCCCCCCEEEEECCCCCHHHHHHHHHCCCEEEEEEECCCCHHHHHHHCC---CCE T ss_conf 87687778845018989999999954899989499969987698999997045707899986620013222204---432 Q ss_pred CCCHHHHCCCCHHHHCCCCCCEEEEECCCHHHHHHHHHHHHHHHCCCCCCCHHHHEEEHHHHHHHHHCCCHHHHHHHHHH Q ss_conf 20000000143155213322201120232246788999998520100000011020334478875301231233234543 Q gi|254780398|r 98 EIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVL 177 (284) Q Consensus 98 ~ii~~Dal~~d~~~~~~~~~~~~vvgNLPYnIss~Il~~ll~~~~~~~~~~~~vlmvQkEvA~Rl~a~pg~k~Yg~LSv~ 177 (284) +++++||+++|+..+ +.+++|||||||||||+|+.+++.... .+..+++|+|||||+|++|.+ +||+||++ T Consensus 79 ~ii~~D~l~~~~~~~---~~~~~vVgNLPY~Iss~ii~~ll~~~~---~~~~~vlmvQkEvA~Rl~~~~---~y~~lSv~ 149 (249) T 3ftd_A 79 EVINEDASKFPFCSL---GKELKVVGNLPYNVASLIIENTVYNKD---CVPLAVFMVQKEVAEKLQGKK---DTGWLSVF 149 (249) T ss_dssp EEECSCTTTCCGGGS---CSSEEEEEECCTTTHHHHHHHHHHTGG---GCSEEEEEEEHHHHHHHHTSS---CCCHHHHH T ss_pred EEEECCHHHCCHHHC---CCCCEEEECCCHHHHHHHHHHHHHCCC---CCCEEEEEEEHHHHHHHCCCC---CCCHHHHH T ss_conf 899634011786462---976258614421041799999873145---530057767599998731788---98734699 Q ss_pred HCCCCCEEEECCCCCCEECCCCCCCEEEEEECCCCCCCCCCHHHHHHHHHHHHCCCCHHHHHHHHHCCCHHHHHHCCCCC Q ss_conf 20133201200011000010578757887301258855347678999999997273138999876318178999787774 Q gi|254780398|r 178 TGWRTKATMMFDISPHVFFPSPKVTSTVIHFIPHLNPIPCCLESLKKITQEAFGKRRKTLRQSLKRLGGENLLHQAGIET 257 (284) Q Consensus 178 ~q~~~~v~~~~~V~~~~F~P~PkVdS~vi~l~pk~~~~~~~~~~~~~~~~~~F~~RRK~l~~~L~~~~~~~~l~~~~i~~ 257 (284) +|++|+++++++|||++|+|+|||||++|+++|++.....+.+.|+.+++.+|++|||+|+|+|. +.+++++|+++ T Consensus 150 ~q~~~~~~~~~~V~~~~F~P~PkVdS~vv~l~~~~~~~~~~~~~~~~~v~~~F~~rRK~l~~~l~----~~~l~~~~i~~ 225 (249) T 3ftd_A 150 VRTFYDVNYVMTVPPRFFVPPPKVQSAVIKLVKNEKFPVKDLKNYKKFLTKIFQNRRKVLRKKIP----EELLKEAGINP 225 (249) T ss_dssp HHHHEEEEEEEEECGGGEESCCSSCEEEEEEEECCCSCCCCHHHHHHHHHHHHSSTTSCGGGTSC----HHHHHHTTCCT T ss_pred HHHHHHEEECCCCCHHHCCCCCCCCEEEEEEEECCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHCCCCC T ss_conf 98664310014566554689996235889987579888531789999999998750455658789----99999879598 Q ss_pred CCCHHCCCHHHHHHHHHHHHHC Q ss_conf 6571208999999999998636 Q gi|254780398|r 258 NLRAENLSIEDFCRITNILTDN 279 (284) Q Consensus 258 ~~R~e~Ls~~~~~~L~~~l~~~ 279 (284) +.|||+|+++||++|++.+.++ T Consensus 226 ~~R~e~Ls~~~~~~L~~~l~~~ 247 (249) T 3ftd_A 226 DARVEQLSLEDFFKLYRLIEDS 247 (249) T ss_dssp TCCGGGCCHHHHHHHHHHHHCC T ss_pred CCCHHHCCHHHHHHHHHHHHHC T ss_conf 8894779999999999999971 No 7 >1qam_A ERMC' methyltransferase; rRNA methyltransferase ERMC', cofactor analogs; 2.20A {Bacillus subtilis} SCOP: c.66.1.24 PDB: 1qan_A* 1qao_A* 1qaq_A* 2erc_A Probab=100.00 E-value=0 Score=474.77 Aligned_cols=238 Identities=22% Similarity=0.314 Sum_probs=212.6 Q ss_pred CCCCCCCCCCCCCHHHHHHHHHHCCCCCCCEEEEECCCCCHHHHHHHHCCCCEEEEECCCCCCHHHHHHHHHHHHCCCCC Q ss_conf 84336584112398999999997198999879997589882346775023525998425543036887875322001220 Q gi|254780398|r 20 IPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQHPNRLEI 99 (284) Q Consensus 20 ~p~k~lGQnFL~d~~i~~~iv~~~~~~~~~~VlEIGpG~G~LT~~Ll~~~~~~v~aiEiD~~~~~~l~~~~~~~~~~~~i 99 (284) +++|++|||||+|++++++||+.+++.++|.|||||||+|+||..|++++ ++|+|||+|+++++.|++++...+ ++++ T Consensus 3 ~~~~k~GQnFL~d~~i~~~Iv~~~~~~~~d~VlEIGpG~G~LT~~L~~~~-~~v~avEiD~~l~~~L~~~~~~~~-n~~i 80 (244) T 1qam_A 3 EKNIKHSQNFITSKHNIDKIMTNIRLNEHDNIFEIGSGKGHFTLELVQRC-NFVTAIEIDHKLCKTTENKLVDHD-NFQV 80 (244) T ss_dssp -------CCBCCCHHHHHHHHTTCCCCTTCEEEEECCTTSHHHHHHHHHS-SEEEEECSCHHHHHHHHHHTTTCC-SEEE T ss_pred CCCCCCCCCCCCCHHHHHHHHHHCCCCCCCEEEEECCCCCHHHHHHHHCC-CCEEEEEECHHHHHHHHHHHCCCC-CEEE T ss_conf 99888888414799999999995678999979997388719999998555-830699853017799997414477-6577 Q ss_pred CHHHHCCCCHHHHCCCCCCEEEEECCCHHHHHHHHHHHHHHHCCCCCCCHHHHEEEHHHHHHHHHCCCHHHHHHHHHHHC Q ss_conf 00000014315521332220112023224678899999852010000001102033447887530123123323454320 Q gi|254780398|r 100 IQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTG 179 (284) Q Consensus 100 i~~Dal~~d~~~~~~~~~~~~vvgNLPYnIss~Il~~ll~~~~~~~~~~~~vlmvQkEvA~Rl~a~pg~k~Yg~LSv~~q 179 (284) ++||||++|+++ ..+++|||||||||||+|+++++... .+..+++|+|||||+||+|+|| +||+++| T Consensus 81 i~~D~l~~~~~~----~~~~~vv~NLPYnIss~Il~~ll~~~----~~~~~~~mvQkEvA~Rl~a~~g-----~lsv~~~ 147 (244) T 1qam_A 81 LNKDILQFKFPK----NQSYKIFGNIPYNISTDIIRKIVFDS----IADEIYLIVEYGFAKRLLNTKR-----SLALFLM 147 (244) T ss_dssp ECCCGGGCCCCS----SCCCEEEEECCGGGHHHHHHHHHHSC----CCSEEEEEEEHHHHHHHTCTTS-----HHHHHHT T ss_pred EECHHHCCCCCC----CCCEEEEEECHHHHHHHHHHHHCCCC----CCCEEEEEEEEHHHHHHHCCCC-----CCHHHHH T ss_conf 300122256544----67547997430552389998750244----3000353310012331230257-----5235532 Q ss_pred CCCCEEEECCCCCCEECCCCCCCEEEEEECCCCCCCC-CCHHHHHHHHHHHHCCCCHHHHHHHHHCCCHHHHHHCCCCCC Q ss_conf 1332012000110000105787578873012588553-476789999999972731389998763181789997877746 Q gi|254780398|r 180 WRTKATMMFDISPHVFFPSPKVTSTVIHFIPHLNPIP-CCLESLKKITQEAFGKRRKTLRQSLKRLGGENLLHQAGIETN 258 (284) Q Consensus 180 ~~~~v~~~~~V~~~~F~P~PkVdS~vi~l~pk~~~~~-~~~~~~~~~~~~~F~~RRK~l~~~L~~~~~~~~l~~~~i~~~ 258 (284) ++|+++++++|||+||+|+|||||+||+|+|++.+.. .+.+.|..+++.+|++|||++.+... ..++++.+|++ T Consensus 148 ~~~~~~~~~~V~~~~F~P~PkVdS~vi~l~~k~~~~~~~~~~~~~~~~~~~F~~rrK~l~~~~~---~~~~l~~~gi~-- 222 (244) T 1qam_A 148 AEVDISILSMVPREYFHPKPKVNSSLIRLNRKKSRISHKDKQKYNYFVMKWVNKEYKKIFTKNQ---FNNSLKHAGID-- 222 (244) T ss_dssp TTEEEEEEEEECGGGSBSCCSSCEEEEEEEECCCSSCGGGHHHHHHHHHHHHTTCGGGTCCHHH---HHHHHHHHTCS-- T ss_pred HHHHCCCCCCCCHHHCCCCCCCEEEEEEEEECCCCCCCCCHHHHHHHHHHHHHHCCCCCCCHHH---HHHHHHHCCCC-- T ss_conf 3223223455680205689983389999997898887527999999999998414460357788---99999984999-- Q ss_pred CCHHCCCHHHHHHHHHHHHH Q ss_conf 57120899999999999863 Q gi|254780398|r 259 LRAENLSIEDFCRITNILTD 278 (284) Q Consensus 259 ~R~e~Ls~~~~~~L~~~l~~ 278 (284) |||+||++||++|++.++. T Consensus 223 -~~e~Ls~e~~~~L~~~~~~ 241 (244) T 1qam_A 223 -DLNNISFEQFLSLFNSYKL 241 (244) T ss_dssp -CTTSCCHHHHHHHHHHHHH T ss_pred -CHHHCCHHHHHHHHHHHHH T ss_conf -8132999999999999986 No 8 >1i4w_A Mitochondrial replication protein MTF1; mitochondrial transcription factor, transcription initiation; 2.60A {Saccharomyces cerevisiae} SCOP: c.66.1.24 Probab=100.00 E-value=0 Score=442.86 Aligned_cols=269 Identities=15% Similarity=0.233 Sum_probs=225.7 Q ss_pred CCCCCCCHHHHHHHHHCCCCCCCCCCCCCCCCHHHHHHHHHHCCCC------CCCEEEEECCCCCHHHHHHHHC-CCCEE Q ss_conf 9778884479999998189843365841123989999999971989------9987999758988234677502-35259 Q gi|254780398|r 1 MTMNNKSHSLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSL------DGITVIEIGAGPGNLTQMLLTL-GARKV 73 (284) Q Consensus 1 ~~~~~~~~~i~~ll~~~~~~p~k~lGQnFL~d~~i~~~iv~~~~~~------~~~~VlEIGpG~G~LT~~Ll~~-~~~~v 73 (284) ||-..+-.+++++ .+++|++|||||+|++++++|++.+++. .+.+|||||||+|+||+.|+++ +++++ T Consensus 11 ~~~~~~lp~~~~~-----~k~k~~~Gq~fL~d~~l~~kIv~~l~l~~~~~~~~~~~IlEIgPG~G~lT~~Ll~~~~pk~~ 85 (353) T 1i4w_A 11 MASSVPIPGIKDI-----SKLKFFYGFKYLWNPTVYNKIFDKLDLTKTYKHPEELKVLDLYPGVGIQSAIFYNKYCPRQY 85 (353) T ss_dssp -----CCCCCCTT-----CSSCCGGGCCCBCCHHHHHHHHHHHCGGGTCCCTTTCEEEEESCTTCHHHHHHHHHHCCSEE T ss_pred HHCCCCCCCHHHH-----HHHHHHHCHHHCCCHHHHHHHHHHHCCCCCCCCCCCCEEEEECCCCCHHHHHHHHHCCCCEE T ss_conf 5416889981777-----77887635444389999999998736763335778996999899988999999852588769 Q ss_pred EEECCCCCCHHHHHHHHHHHHCCCCCCHHHHCCCCH-HHHC--------------CCCCCEEEEECCCHHHHHHHHHHHH Q ss_conf 984255430368878753220012200000001431-5521--------------3322201120232246788999998 Q gi|254780398|r 74 IVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDF-EKFF--------------NISSPIRIIANLPYNIGTRLLFNWI 138 (284) Q Consensus 74 ~aiEiD~~~~~~l~~~~~~~~~~~~ii~~Dal~~d~-~~~~--------------~~~~~~~vvgNLPYnIss~Il~~ll 138 (284) ++||+|+++++.|++++.. .+++++++|+++++. .++. ..+.++.|||||||||||+|+++|+ T Consensus 86 i~iE~D~~~~~~L~~~~~~--~~~~ii~~D~l~~~~~~~l~~~~~~~~p~~~~~~~~~~~l~vvaNLPynis~~ll~k~l 163 (353) T 1i4w_A 86 SLLEKRSSLYKFLNAKFEG--SPLQILKRDPYDWSTYSNLIDEERIFVPEVQSSDHINDKFLTVANVTGEGSEGLIMQWL 163 (353) T ss_dssp EEECCCHHHHHHHHHHTTT--SSCEEECSCTTCHHHHHHHTTTTCSSCCCCCCTTSEEEEEEEEEECCSTTHHHHHHHHH T ss_pred EEEECCHHHHHHHHHHHCC--CCCEEEECCHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCEEEEEECCCHHHHHHHHHHH T ss_conf 9997778899999987145--88479946456532156554201234665432113688479999488443699999999 Q ss_pred HHHC-----CCCCCCHHHHEEEHHHHHHHHHCCCHHHHHHHHHHHCCCCCEEEE---------------------CCCCC Q ss_conf 5201-----000000110203344788753012312332345432013320120---------------------00110 Q gi|254780398|r 139 SADT-----WPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMM---------------------FDISP 192 (284) Q Consensus 139 ~~~~-----~~~~~~~~vlmvQkEvA~Rl~a~pg~k~Yg~LSv~~q~~~~v~~~---------------------~~V~~ 192 (284) .... +..+..+|++|+|+|||+||+|+||++.||||||++|++|+++++ +.||+ T Consensus 164 ~~~~~~~~l~~~G~v~m~lm~QkEvAeRi~A~~g~k~y~rlSV~~q~~~dv~~l~~~~~~~~~~f~~~~~~~~~~~~v~~ 243 (353) T 1i4w_A 164 SCIGNKNWLYRFGKVKMLLWMPSTTARKLLARPGMHSRSKCSVVREAFTDTKLIAISDANELKGFDSQCIEEWDPILFSA 243 (353) T ss_dssp HHHHHTCGGGGGSEEEEEEEEEHHHHHHHHCCTTSTTCCHHHHHHHHHEEEEEEEESCGGGGGGSCHHHHHHHCCEECCG T ss_pred HHCCCCCCCCCCCCEEEEEEECHHHHHHHHCCCCCCCHHHHHHHHHHHHCEEEEECCCCCCCCCCCCCCCCCCCCCCCCC T ss_conf 96513433311364247888529999998447897422199999998731234222553212334544322457766795 Q ss_pred CEECCCCCCCEEEEEECCCCCCCCCCHHHHHHHHHHHHCCCCHHHHHHHHHCCC--HHHHHHCCCC---CCCCHHCCCHH Q ss_conf 000105787578873012588553476789999999972731389998763181--7899978777---46571208999 Q gi|254780398|r 193 HVFFPSPKVTSTVIHFIPHLNPIPCCLESLKKITQEAFGKRRKTLRQSLKRLGG--ENLLHQAGIE---TNLRAENLSIE 267 (284) Q Consensus 193 ~~F~P~PkVdS~vi~l~pk~~~~~~~~~~~~~~~~~~F~~RRK~l~~~L~~~~~--~~~l~~~~i~---~~~R~e~Ls~~ 267 (284) ++|+|+|+|+|+||+++|+..+. +.+.|+.+++.+|.+|||+|+++|+...+ .+.+.....+ +++||++||++ T Consensus 244 ~~f~P~pkv~savv~~~P~~~~~--d~~~~~~vvr~~F~~RRK~l~~~L~~l~pga~~~l~~~~~~~~~l~kRpe~Lt~~ 321 (353) T 1i4w_A 244 AEIWPTKGKPIALVEMDPIDFDF--DVDNWDYVTRHLMILKRTPLNTVMDSLGHGGQQYFNSRITDKDLLKKCPIDLTND 321 (353) T ss_dssp GGBSSCSCCCEEEEEEEECCCCS--CHHHHHHHHHHHHTTTTSCTTTGGGGSSTTHHHHHTTTCCCCTTTSSCGGGCCHH T ss_pred CCCCCCCCCCEEEEEEECCCCCC--CHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHCCCCCCHHCCCCCCCHH T ss_conf 44567999857999965589986--9899999999999871788999998767885899987467843000485679999 Q ss_pred HHHHHHHHHHH Q ss_conf 99999999863 Q gi|254780398|r 268 DFCRITNILTD 278 (284) Q Consensus 268 ~~~~L~~~l~~ 278 (284) ||+.|++.+.+ T Consensus 322 ef~~La~~f~~ 332 (353) T 1i4w_A 322 EFIYLTKLFME 332 (353) T ss_dssp HHHHHHHHHHT T ss_pred HHHHHHHHHHH T ss_conf 99999999981 No 9 >1yub_A Ermam, rRNA methyltransferase; MLS antibiotics; NMR {Streptococcus pneumoniae} SCOP: c.66.1.24 Probab=100.00 E-value=0 Score=444.92 Aligned_cols=239 Identities=21% Similarity=0.320 Sum_probs=210.1 Q ss_pred CCCCCCCCCCCCHHHHHHHHHHCCCCCCCEEEEECCCCCHHHHHHHHCCCCEEEEECCCCCCHHHHHHHHHHHHCCCCCC Q ss_conf 43365841123989999999971989998799975898823467750235259984255430368878753220012200 Q gi|254780398|r 21 PKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQHPNRLEII 100 (284) Q Consensus 21 p~k~lGQnFL~d~~i~~~iv~~~~~~~~~~VlEIGpG~G~LT~~Ll~~~~~~v~aiEiD~~~~~~l~~~~~~~~~~~~ii 100 (284) -+++||||||+|++++++|++.+++.++|.|||||||+|+||..|+++ +++|+|||+|+++++.|++.+...+ +++++ T Consensus 3 ~~~k~GQnFL~d~~i~~~Iv~~~~~~~~d~VlEIGpG~G~LT~~L~~~-~~~v~aiE~D~~l~~~l~~~~~~~~-n~~ii 80 (245) T 1yub_A 3 KNIKYSQNFLTSEKVLNQIIKQLNLKETDTVYEIGTGKGHLTTKLAKI-SKQVTSIELDSHLFNLSSEKLKLNT-RVTLI 80 (245) T ss_dssp CCCCSCCCBCCCTTTHHHHHHHCCCCSSEEEEECSCCCSSCSHHHHHH-SSEEEESSSSCSSSSSSSCTTTTCS-EEEEC T ss_pred CCCCCCCCCCCCHHHHHHHHHHCCCCCCCEEEEECCCHHHHHHHHHHC-CCCCEEECCCHHHHHHHHHHHHCCC-CCHHH T ss_conf 998878714789899999999458999996899799735999999961-6500403404466898875541134-00022 Q ss_pred HHHHCCCCHHHHCCCCCCEEEEECCCHHHHHHHHHHHHHHHCCCCCCCHHHHEEEHHHHHHHHHCCCHHHHHHHHHHHCC Q ss_conf 00000143155213322201120232246788999998520100000011020334478875301231233234543201 Q gi|254780398|r 101 QDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGW 180 (284) Q Consensus 101 ~~Dal~~d~~~~~~~~~~~~vvgNLPYnIss~Il~~ll~~~~~~~~~~~~vlmvQkEvA~Rl~a~pg~k~Yg~LSv~~q~ 180 (284) ++|++++|++. ..+++|||||||||||+|+.+++... .+..+++|+|||||+|+++ .||+|||++|+ T Consensus 81 ~~D~l~~~~~~----~~~~~vv~NLPY~Iss~il~~ll~~~----~~~~~~~m~QkEva~ri~~-----~yg~Lsv~~q~ 147 (245) T 1yub_A 81 HQDILQFQFPN----KQRYKIVGNIPYHLSTQIIKKVVFES----RASDIYLIVEEGFYKRTLD-----IHRTLGLLLHT 147 (245) T ss_dssp CSCCTTTTCCC----SSEEEEEEECCSSSCHHHHHHHHHHC----CCEEEEEEEESSHHHHHHC-----GGGSHHHHTTT T ss_pred HCCHHCCCCCC----CCCEEEEECCCHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHH-----CCCCCHHHHHH T ss_conf 01100014445----78656871675787648999998721----2788899999999998752-----15460688762 Q ss_pred CCCEEEECCCCCCEECCCCCCCEEEEEECCCCCCCC-CCHHHHHHHHHHHHCCCCHHHHHHHHHCCCHHHHHHCCCCCCC Q ss_conf 332012000110000105787578873012588553-4767899999999727313899987631817899978777465 Q gi|254780398|r 181 RTKATMMFDISPHVFFPSPKVTSTVIHFIPHLNPIP-CCLESLKKITQEAFGKRRKTLRQSLKRLGGENLLHQAGIETNL 259 (284) Q Consensus 181 ~~~v~~~~~V~~~~F~P~PkVdS~vi~l~pk~~~~~-~~~~~~~~~~~~~F~~RRK~l~~~L~~~~~~~~l~~~~i~~~~ 259 (284) +|+++.+++|||++|+|+|||||+||+++|+..+.. ...+.|+.+++.+|++|||++.+... ..+.++.++++ T Consensus 148 ~~~i~~~~~V~~~~F~P~PKVdSavi~i~~k~~~~~~~~~~~~~~~~~~~f~~~rk~l~~~~~---~~~~~~~~~~~--- 221 (245) T 1yub_A 148 QVSIQQLLKLPAECFHPKPKVNSVLIKLTRHTTDVPDKYWKLYTYFVSKWVNREYRQLFTKNQ---FHQAMKHAKVN--- 221 (245) T ss_dssp TBCCCEEEEECCTTSBSSCCSCEEEEEECBCSCSSCHHHHHHHHHHHHHHHHTCHHHHCSSSH---HHHHHHHTTCS--- T ss_pred CCEEEEEEEECHHHCCCCCCCEEEEEEEEECCCCCCHHHHHHHHHHHHHHHCCHHHHHHCHHH---HHHHHHHCCCC--- T ss_conf 201226007562315589984389999994799986368999999999998105777503348---99999876899--- Q ss_pred CHHCCCHHHHHHHHHHHHHCC Q ss_conf 712089999999999986364 Q gi|254780398|r 260 RAENLSIEDFCRITNILTDNQ 280 (284) Q Consensus 260 R~e~Ls~~~~~~L~~~l~~~~ 280 (284) |+++|+++||++|++.+.... T Consensus 222 ~~~~ls~~e~~~l~~~~~~~~ 242 (245) T 1yub_A 222 NLSTITYEQVLSIFNSYLLFN 242 (245) T ss_dssp CTTSCCSHHHHHHHHHHHHHT T ss_pred CCCCCCHHHHHHHHHHHHHHC T ss_conf 966389999999999999853 No 10 >1wy7_A Hypothetical protein PH1948; seven-stranded beta sheet, methyltransferase fold, structural genomics; HET: SAH; 2.20A {Pyrococcus horikoshii OT3} SCOP: c.66.1.32 Probab=99.54 E-value=2e-14 Score=108.67 Aligned_cols=118 Identities=24% Similarity=0.362 Sum_probs=94.0 Q ss_pred CCHHHHHHHHHC-CC-CCCCCCCCCCCCCHHHHHHHHHH---CCCCCCCEEEEECCCCCHHHHHHHHCCCCEEEEECCCC Q ss_conf 844799999981-89-84336584112398999999997---19899987999758988234677502352599842554 Q gi|254780398|r 6 KSHSLKTILSHY-KI-IPKKYMGQNFLLDLNILKKIAES---SGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQ 80 (284) Q Consensus 6 ~~~~i~~ll~~~-~~-~p~k~lGQnFL~d~~i~~~iv~~---~~~~~~~~VlEIGpG~G~LT~~Ll~~~~~~v~aiEiD~ 80 (284) +-+++.-.|++. ++ .|++.||| |.+++.++.+++.. .+..+|+.|||+|||+|.++.+++.+++.+|+++|+|+ T Consensus 4 ~~k~l~~~l~~~~~f~~p~~~l~q-~~Tp~~ia~~~~~~a~~~~dl~g~~vlDlg~G~G~l~i~a~~~g~~~v~~vDid~ 82 (207) T 1wy7_A 4 RKKELAIALSKLKGFKNPKVWLEQ-YRTPGNAASELLWLAYSLGDIEGKVVADLGAGTGVLSYGALLLGAKEVICVEVDK 82 (207) T ss_dssp CCHHHHHHHHTSCCCSSCCGGGTC-CCCCHHHHHHHHHHHHHTTSSTTCEEEEETCTTCHHHHHHHHTTCSEEEEEESCH T ss_pred CHHHHHHHHHCCCCCCCCCCCCCC-CCCCHHHHHHHHHHHHHCCCCCCCEEEECCCCCCHHHHHHHHCCCCEEEEECCCH T ss_conf 078999998158998999735113-7999999999999998649879898999134256999999974998699987989 Q ss_pred CCHHHHHHHHHHHHCCCCCCHHHHCCCCHHHHCCCCCCEEEEECCCHHHHH Q ss_conf 303688787532200122000000014315521332220112023224678 Q gi|254780398|r 81 QFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGT 131 (284) Q Consensus 81 ~~~~~l~~~~~~~~~~~~ii~~Dal~~d~~~~~~~~~~~~vvgNLPYnIss 131 (284) ..++.+++.......+.+++.+|+.+++. ..-.||+|.||+..+ T Consensus 83 ~~~~~a~~N~~~~~~~~~~~~~d~~~~~~-------~~D~ii~npP~~~~~ 126 (207) T 1wy7_A 83 EAVDVLIENLGEFKGKFKVFIGDVSEFNS-------RVDIVIMNPPFGSQR 126 (207) T ss_dssp HHHHHHHHHTGGGTTSEEEEESCGGGCCC-------CCSEEEECCCCSSSS T ss_pred HHHHHHHHHHHHCCCCCEEEECCHHHHHC-------CCCEEECCCCCCHHC T ss_conf 99999999999839982799766788614-------654644488852010 No 11 >1ne2_A Hypothetical protein TA1320; structural genomics, conserved hypothetical protein, PSI, protein structure initiative; 1.75A {Thermoplasma acidophilum} SCOP: c.66.1.32 Probab=99.23 E-value=2.8e-10 Score=82.84 Aligned_cols=108 Identities=22% Similarity=0.242 Sum_probs=83.8 Q ss_pred HHHHHHHCCC--CCCCCCCCCCCCCHHHHHHHHHHC---CCCCCCEEEEECCCCCHHHHHHHHCCCCEEEEECCCCCCHH Q ss_conf 9999998189--843365841123989999999971---98999879997589882346775023525998425543036 Q gi|254780398|r 10 LKTILSHYKI--IPKKYMGQNFLLDLNILKKIAESS---GSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFP 84 (284) Q Consensus 10 i~~ll~~~~~--~p~k~lGQnFL~d~~i~~~iv~~~---~~~~~~~VlEIGpG~G~LT~~Ll~~~~~~v~aiEiD~~~~~ 84 (284) +.-.|++..- .|+-+|-|. .++..++.+++..+ +...|+.|||+|||+|.|+..++.+++++|+++|+|+..++ T Consensus 10 l~~~l~~~~~~~~~~~~leQY-~t~~~iaa~~~~~~~~~gd~~Gk~VLDlGcGtG~l~i~a~~~ga~~V~~vDid~~a~~ 88 (200) T 1ne2_A 10 LEIRLQKLQQQGNFKNYLEQY-PTDASTAAYFLIEIYNDGNIGGRSVIDAGTGNGILACGSYLLGAESVTAFDIDPDAIE 88 (200) T ss_dssp HHHHHHTSCCCC--------C-CCCHHHHHHHHHHHHHHTSSBTSEEEEETCTTCHHHHHHHHTTBSEEEEEESCHHHHH T ss_pred HHHHHHCCCCCCCCCCCCCCC-CCCHHHHHHHHHHHHHCCCCCCCEEEECCCCHHHHHHHHHHCCCCEEEEEECCHHHHH T ss_conf 999984689999998771007-9988999999999986699893989987575109999999679987967508999999 Q ss_pred HHHHHHHHHHCCCCCCHHHHCCCCHHHHCCCCCCEEEEECCCHHH Q ss_conf 887875322001220000000143155213322201120232246 Q gi|254780398|r 85 ILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNI 129 (284) Q Consensus 85 ~l~~~~~~~~~~~~ii~~Dal~~d~~~~~~~~~~~~vvgNLPYnI 129 (284) .++++.. +++++++|+.+++- .--.||+|.||.. T Consensus 89 ~a~~N~~----~~~~~~~d~~~~~~-------~fD~Vi~NPPfg~ 122 (200) T 1ne2_A 89 TAKRNCG----GVNFMVADVSEISG-------KYDTWIMNPPFGS 122 (200) T ss_dssp HHHHHCT----TSEEEECCGGGCCC-------CEEEEEECCCC-- T ss_pred HHHHHHH----HCCCEEEEHHHCCC-------CCCEEEECCCCCH T ss_conf 9999898----57853765210577-------5488987798631 No 12 >1dus_A MJ0882; hypothetical protein, methanococcus jannaschii, structural genomics, BSGC structure funded by NIH; 1.80A {Methanocaldococcus jannaschii} SCOP: c.66.1.4 Probab=99.16 E-value=1.7e-10 Score=84.17 Aligned_cols=108 Identities=15% Similarity=0.215 Sum_probs=83.1 Q ss_pred CCCCCCCCCHHHHHHHHHHCCCCCCCEEEEECCCCCHHHHHHHHCCCCEEEEECCCCCCHHHHHHHHHHH--H-CCCCCC Q ss_conf 6584112398999999997198999879997589882346775023525998425543036887875322--0-012200 Q gi|254780398|r 24 YMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQH--P-NRLEII 100 (284) Q Consensus 24 ~lGQnFL~d~~i~~~iv~~~~~~~~~~VlEIGpG~G~LT~~Ll~~~~~~v~aiEiD~~~~~~l~~~~~~~--~-~~~~ii 100 (284) -+|++.+ |.. .+-+++.+.+.+++.|||+|||.|.++..+++.+ .+|+++|+|+.+++.+++....+ + .+++++ T Consensus 31 vf~~~~~-d~~-t~~Ll~~l~~~~~~~vLDiGcG~G~~~~~la~~~-~~v~~iDis~~~i~~a~~n~~~~~l~~~~i~~~ 107 (194) T 1dus_A 31 VFSYGKV-DKG-TKILVENVVVDKDDDILDLGCGYGVIGIALADEV-KSTTMADINRRAIKLAKENIKLNNLDNYDIRVV 107 (194) T ss_dssp STTTTSC-CHH-HHHHHHHCCCCTTCEEEEETCTTSHHHHHHGGGS-SEEEEEESCHHHHHHHHHHHHHTTCTTSCEEEE T ss_pred CCCCCCC-CHH-HHHHHHHCCCCCCCEEEEECCCCCHHHHHHHHHC-CEEEEEECCHHHHHHHHHHHHHHCCCCCEEEEE T ss_conf 7689986-999-9999982898899949995696429999999738-847998263678899999999819998619999 Q ss_pred HHHHCCCCHHHHCCCCCCEEEEECCCHHHHHHHHHHHHH Q ss_conf 000001431552133222011202322467889999985 Q gi|254780398|r 101 QDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWIS 139 (284) Q Consensus 101 ~~Dal~~d~~~~~~~~~~~~vvgNLPYnIss~Il~~ll~ 139 (284) ++|+++. +++ ..--.|++|.||+...+.+..++. T Consensus 108 ~~D~~~~-~~~----~~fD~Ii~~~~~~~~~~~~~~~l~ 141 (194) T 1dus_A 108 HSDLYEN-VKD----RKYNKIITNPPIRAGKEVLHRIIE 141 (194) T ss_dssp ECSTTTT-CTT----SCEEEEEECCCSTTCHHHHHHHHH T ss_pred ECCHHHH-CCC----CCCCEEEECCCHHCCCHHHHHHHH T ss_conf 8736763-356----774399999522116156799999 No 13 >2ih2_A Modification methylase TAQI; DNA, DNA methyltransferase, target base partner, 5- methylpyrimidin-2(1H)-ONE, base flipping; HET: 5PY 6MA NEA; 1.61A {Thermus aquaticus} SCOP: c.66.1.27 d.287.1.1 PDB: 2ibs_A* 2ibt_A* 2ih4_A* 2ih5_A* 2jg3_A* 2np6_A* 2np7_A* 1aqj_A* 1aqi_A* 2adm_A* 1g38_A* Probab=99.09 E-value=7.2e-10 Score=80.34 Aligned_cols=102 Identities=19% Similarity=0.192 Sum_probs=79.7 Q ss_pred HHHHCCCCCCCCCCCCCCCCHHHHHHHHHHCCCCCCCEEEEECCCCCHHHHHHHHCC--CCEEEEECCCCCCHHHHHHHH Q ss_conf 999818984336584112398999999997198999879997589882346775023--525998425543036887875 Q gi|254780398|r 13 ILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLG--ARKVIVIEKDQQFFPILKDIS 90 (284) Q Consensus 13 ll~~~~~~p~k~lGQnFL~d~~i~~~iv~~~~~~~~~~VlEIGpG~G~LT~~Ll~~~--~~~v~aiEiD~~~~~~l~~~~ 90 (284) +|....=-.+|++||.| +...+++.|++.+...+++.|+|-+||.|.+-.+++++. ..+++++|+|+..++.++ T Consensus 6 ~~~~~s~~~~k~~G~~y-TP~~i~~~~~~~l~~~~~~~IlDPacGsG~FL~~~~~~~~~~~~i~G~did~~~~~la~--- 81 (421) T 2ih2_A 6 LLSLPSNSAPRSLGRVE-TPPEVVDFMVSLAEAPRGGRVLEPACAHGPFLRAFREAHGTAYRFVGVEIDPKALDLPP--- 81 (421) T ss_dssp ---------------CC-CCHHHHHHHHHHCCCCTTCEEEEETCTTCHHHHHHHHHHCSCSEEEEEESCTTTCCCCT--- T ss_pred HHHHHHHHCCCCCCEEC-CCHHHHHHHHHHCCCCCCCEEEECCCCHHHHHHHHHHHCCCCCEEEEEECCHHHHHHHH--- T ss_conf 64211001334298788-91999999999478999699996877646999999986776786999979899999999--- Q ss_pred HHHHCCCCCCHHHHCCCCHHHHCCCCCCEEEEECCCHH Q ss_conf 32200122000000014315521332220112023224 Q gi|254780398|r 91 SQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYN 128 (284) Q Consensus 91 ~~~~~~~~ii~~Dal~~d~~~~~~~~~~~~vvgNLPYn 128 (284) ..+++++|++..++.+-++ .||||.||. T Consensus 82 -----~~~i~~~D~l~~~~~~~fD-----~VigNPPy~ 109 (421) T 2ih2_A 82 -----WAEGILADFLLWEPGEAFD-----LILGNPPYG 109 (421) T ss_dssp -----TEEEEESCGGGCCCSSCEE-----EEEECCCCC T ss_pred -----HHHHHHCCCCCCCCCCCCC-----EEEECCCCC T ss_conf -----7427737733368545777-----787257655 No 14 >3lpm_A Putative methyltransferase; structural genomics, protein structure initiative, NEW YORK structural genomix research consortium, nysgxrc; 2.40A {Listeria monocytogenes} Probab=99.06 E-value=2.9e-10 Score=82.77 Aligned_cols=102 Identities=20% Similarity=0.267 Sum_probs=76.0 Q ss_pred CCCCCCCHHHHHHHHHHCCC-CCCCEEEEECCCCCHHHHHHHHCCCCEEEEECCCCCCHHHHHHHHHHH--HCCCCCCHH Q ss_conf 84112398999999997198-999879997589882346775023525998425543036887875322--001220000 Q gi|254780398|r 26 GQNFLLDLNILKKIAESSGS-LDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQH--PNRLEIIQD 102 (284) Q Consensus 26 GQnFL~d~~i~~~iv~~~~~-~~~~~VlEIGpG~G~LT~~Ll~~~~~~v~aiEiD~~~~~~l~~~~~~~--~~~~~ii~~ 102 (284) |..|-+|.-++...+ .. .++..|||+|+|.|+++..++++...+|++||+|+.+++.++++...+ .++++++++ T Consensus 30 ~~r~~~D~~lLa~~~---~~~~~~~~vLDlG~G~G~~~l~la~~~~~~v~~vDi~~~~~~~A~~N~~~n~l~~~v~~~~~ 106 (259) T 3lpm_A 30 VFSFSIDAVLLAKFS---YLPIRKGKIIDLCSGNGIIPLLLSTRTKAKIVGVEIQERLADMAKRSVAYNQLEDQIEIIEY 106 (259) T ss_dssp TBCCCHHHHHHHHHC---CCCSSCCEEEETTCTTTHHHHHHHTTCCCEEEEECCSHHHHHHHHHHHHHTTCTTTEEEECS T ss_pred CCCCCHHHHHHHHHH---CCCCCCCEEEEEECCCCHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHCCCCHHHEEEEH T ss_conf 734621799999885---08667997999725858999999867898899999989999999999986073301123300 Q ss_pred HHCCCCHHHHCCCCCCEEEEECCCHHHHHH Q ss_conf 000143155213322201120232246788 Q gi|254780398|r 103 DALKVDFEKFFNISSPIRIIANLPYNIGTR 132 (284) Q Consensus 103 Dal~~d~~~~~~~~~~~~vvgNLPYnIss~ 132 (284) |+.++. +....+.--.||+|.||.-++. T Consensus 107 D~~~~~--~~~~~~~fD~Iv~NPPy~~~~~ 134 (259) T 3lpm_A 107 DLKKIT--DLIPKERADIVTCNPPYFATPD 134 (259) T ss_dssp CGGGGG--GTSCTTCEEEEEECCCC----- T ss_pred HHHHHH--HCCCCCCCCEEEECCCCCCCCC T ss_conf 111000--1035542547885788536873 No 15 >2ozv_A Hypothetical protein ATU0636; structural genomics, predicted transferase, predicted O-methyltransferase, PFAM PF05175, PSI-2; HET: MSE; 1.70A {Agrobacterium tumefaciens str} Probab=99.02 E-value=4.2e-10 Score=81.78 Aligned_cols=102 Identities=17% Similarity=0.207 Sum_probs=73.7 Q ss_pred CCCCCCHHHHHHHHHHCCCCCCCEEEEECCCCCHHHHHHHHCCCC-EEEEECCCCCCHHHHHHHHH-----HHHCCCCCC Q ss_conf 411239899999999719899987999758988234677502352-59984255430368878753-----220012200 Q gi|254780398|r 27 QNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGAR-KVIVIEKDQQFFPILKDISS-----QHPNRLEII 100 (284) Q Consensus 27 QnFL~d~~i~~~iv~~~~~~~~~~VlEIGpG~G~LT~~Ll~~~~~-~v~aiEiD~~~~~~l~~~~~-----~~~~~~~ii 100 (284) =.|=+|.-++.. .+...++..|||+|+|.|+++..|+.+.+. +|++||+|+.+++.+++... ...++++++ T Consensus 19 yR~~~DavLLAa---~~~~~~~~rVLDlG~G~G~i~l~La~r~~~~~v~gvEi~~~~~~lAr~N~~ln~~~~~~~ri~~~ 95 (260) T 2ozv_A 19 FQGHMDAMLLAS---LVADDRACRIADLGAGAGAAGMAVAARLEKAEVTLYERSQEMAEFARRSLELPDNAAFSARIEVL 95 (260) T ss_dssp ----CHHHHHHH---TCCCCSCEEEEECCSSSSHHHHHHHHHCTTEEEEEEESSHHHHHHHHHHTTSGGGTTTGGGEEEE T ss_pred ECCCHHHHHHHH---HCCCCCCCEEEECCHHHHHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHHHHCCCCCCCEEE T ss_conf 877527999972---36888989999954367699999998589988999989999999999999986544332353589 Q ss_pred HHHHCCCCHHHH---CCCCCCEEEEECCCHHHHH Q ss_conf 000001431552---1332220112023224678 Q gi|254780398|r 101 QDDALKVDFEKF---FNISSPIRIIANLPYNIGT 131 (284) Q Consensus 101 ~~Dal~~d~~~~---~~~~~~~~vvgNLPYnIss 131 (284) ++|+........ ...+.--.||+|.||+-.+ T Consensus 96 ~~Di~~~~~~~~~~~~~~~~fD~VvsNPPY~~~~ 129 (260) T 2ozv_A 96 EADVTLRAKARVEAGLPDEHFHHVIMNPPYNDAG 129 (260) T ss_dssp ECCTTCCHHHHHHTTCCTTCEEEEEECCCC---- T ss_pred ECHHHCCCHHHHHHHHCCCCCCEEEECCCCCCCC T ss_conf 6332132212344331367626798669844666 No 16 >2yvl_A TRMI protein, hypothetical protein; tRNA, methyltransferase, S-adenosylmethionine, structural genomics, NPPSFA; HET: SAM; 2.20A {Aquifex aeolicus VF5} Probab=98.96 E-value=2.3e-09 Score=77.23 Aligned_cols=93 Identities=14% Similarity=0.121 Sum_probs=76.1 Q ss_pred CCCHHHHHHHHHHCCCCCCCEEEEECCCCCHHHHHHHHCCCCEEEEECCCCCCHHHHHHHHHHHH--CCCCCCHHHHCCC Q ss_conf 23989999999971989998799975898823467750235259984255430368878753220--0122000000014 Q gi|254780398|r 30 LLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQHP--NRLEIIQDDALKV 107 (284) Q Consensus 30 L~d~~i~~~iv~~~~~~~~~~VlEIGpG~G~LT~~Ll~~~~~~v~aiEiD~~~~~~l~~~~~~~~--~~~~ii~~Dal~~ 107 (284) .+-+.-+..|+..+++.+++.|||+|+|.|++|..|++.+ .+|+++|+++.+++.+++.+..+. ++++++++|+.+. T Consensus 74 iiypkD~~~Ii~~l~i~pG~rVLEiGtGsG~lt~~La~~~-g~v~t~e~~e~~~~~A~~n~~~~g~~~nv~~~~~D~~~~ 152 (248) T 2yvl_A 74 IIYPKDSFYIALKLNLNKEKRVLEFGTGSGALLAVLSEVA-GEVWTFEAVEEFYKTAQKNLKKFNLGKNVKFFNVDFKDA 152 (248) T ss_dssp CCCHHHHHHHHHHTTCCTTCEEEEECCTTSHHHHHHHHHS-SEEEEECSCHHHHHHHHHHHHHTTCCTTEEEECSCTTTS T ss_pred CCCHHHHHHHHHHHCCCCCCEEEECCCCCHHHHHHHHHCC-CEEEEECCCHHHHHHHHHHHHHHCCCCCEEEEECCHHHC T ss_conf 0678999999998289999979973743119999998607-879998288999999999899700577059999122214 Q ss_pred CHHHHCCCCCCEEEEECCCH Q ss_conf 31552133222011202322 Q gi|254780398|r 108 DFEKFFNISSPIRIIANLPY 127 (284) Q Consensus 108 d~~~~~~~~~~~~vvgNLPY 127 (284) ++++- ..-.|+.++|- T Consensus 153 ~~~~~----~fD~V~ld~p~ 168 (248) T 2yvl_A 153 EVPEG----IFHAAFVDVRE 168 (248) T ss_dssp CCCTT----CBSEEEECSSC T ss_pred CCCCC----CCCEEEEECCC T ss_conf 32458----78999991787 No 17 >1jg1_A PIMT;, protein-L-isoaspartate O-methyltransferase; rossmann methyltransferase, protein repair isomerization; HET: SAH; 1.20A {Pyrococcus furiosus} SCOP: c.66.1.7 PDB: 1jg2_A* 1jg3_A* 1jg4_A* Probab=98.96 E-value=2.1e-09 Score=77.41 Aligned_cols=82 Identities=18% Similarity=0.259 Sum_probs=69.9 Q ss_pred CCCCCCCHHHHHHHHHHCCCCCCCEEEEECCCCCHHHHHHHHCCCCEEEEECCCCCCHHHHHHHHHHHH-CCCCCCHHHH Q ss_conf 841123989999999971989998799975898823467750235259984255430368878753220-0122000000 Q gi|254780398|r 26 GQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQHP-NRLEIIQDDA 104 (284) Q Consensus 26 GQnFL~d~~i~~~iv~~~~~~~~~~VlEIGpG~G~LT~~Ll~~~~~~v~aiEiD~~~~~~l~~~~~~~~-~~~~ii~~Da 104 (284) || ++..+.+..++.+.+++.+++.|||||+|+|.+|..|++..-..|++||+|+.+++.+++.+.... .++++++||+ T Consensus 71 ~~-~is~P~~~A~ml~~L~l~~g~~VLeIGsGtGy~ta~la~l~g~~V~~IE~~~~l~~~a~~~l~~~g~~nv~~~~gd~ 149 (235) T 1jg1_A 71 GQ-TVSAPHMVAIMLEIANLKPGMNILEVGTGSGWNAALISEIVKTDVYTIERIPELVEFAKRNLERAGVKNVHVILGDG 149 (235) T ss_dssp TC-EECCHHHHHHHHHHHTCCTTCCEEEECCTTSHHHHHHHHHHCSCEEEEESCHHHHHHHHHHHHHTTCCSEEEEESCG T ss_pred CC-EECHHHHHHHHHHHCCCCCCCEEEEECCCCCHHHHHHHHHCCCEEEEEEECHHHHHHHHHHHHHCCCCEEEEEECCC T ss_conf 98-97668999999997048999879994788767899999864973999962889999999999980997169998870 Q ss_pred CCCC Q ss_conf 0143 Q gi|254780398|r 105 LKVD 108 (284) Q Consensus 105 l~~d 108 (284) ..-. T Consensus 150 ~~g~ 153 (235) T 1jg1_A 150 SKGF 153 (235) T ss_dssp GGCC T ss_pred CCCC T ss_conf 0166 No 18 >2qm3_A Predicted methyltransferase; putative methyltransferase, structural genomics, PSI-2, protein structure initiative; HET: MSE; 2.05A {Pyrococcus furiosus dsm 3638} Probab=98.93 E-value=5.6e-09 Score=74.77 Aligned_cols=113 Identities=13% Similarity=0.179 Sum_probs=84.3 Q ss_pred CCCCCCCCCCCCCCCCHHHHHHHHHH--CCCCCCCEEEEECCCCCH-HHHHHHHCCCCEEEEECCCCCCHHHHHHHHHHH Q ss_conf 18984336584112398999999997--198999879997589882-346775023525998425543036887875322 Q gi|254780398|r 17 YKIIPKKYMGQNFLLDLNILKKIAES--SGSLDGITVIEIGAGPGN-LTQMLLTLGARKVIVIEKDQQFFPILKDISSQH 93 (284) Q Consensus 17 ~~~~p~k~lGQnFL~d~~i~~~iv~~--~~~~~~~~VlEIGpG~G~-LT~~Ll~~~~~~v~aiEiD~~~~~~l~~~~~~~ 93 (284) .+.+|...+-|.+.....+..+.... ....++..||++|+|+|. ++.+++. ++.+|+++|+|+++++.+++....+ T Consensus 140 ~~p~~~~~~~q~~~~~~~~~~r~~~~~~~~~~~g~~vldlg~g~g~~l~~~l~~-~~~~V~~vDi~~~~l~~a~~~a~~~ 218 (373) T 2qm3_A 140 DRPEPLHEFDQAYVTPETTVARVILMHTRGDLENKDIFVLGDDDLTSIALMLSG-LPKRIAVLDIDERLTKFIEKAANEI 218 (373) T ss_dssp TCCCCCGGGTCCCBCHHHHHHHHHHHHHTTCSTTCEEEEESCTTCHHHHHHHHT-CCSEEEEECSCHHHHHHHHHHHHHH T ss_pred CCCCCEEEHHCCCCCHHHHHHHHHHHHHCCCCCCCEEEEEECCCHHHHHHHHHC-CCCEEEEEECCHHHHHHHHHHHHHH T ss_conf 599750461102144889999999998637778997999979924999999976-9998999979799999999999981 Q ss_pred H-CCCCCCHHHHCCCCHHHHCCCCCCEEEEECCCHHHHHH Q ss_conf 0-01220000000143155213322201120232246788 Q gi|254780398|r 94 P-NRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTR 132 (284) Q Consensus 94 ~-~~~~ii~~Dal~~d~~~~~~~~~~~~vvgNLPYnIss~ 132 (284) . .+++++++|+.+.....+. +..-.|+.|.||++.+. T Consensus 219 g~~~i~~~~~d~~~~~~~~~~--~~fD~v~~dpp~~~~~~ 256 (373) T 2qm3_A 219 GYEDIEIFTFDLRKPLPDYAL--HKFDTFITDPPETLEAI 256 (373) T ss_dssp TCCCEEEECCCTTSCCCTTTS--SCBSEEEECCCSSHHHH T ss_pred CCCCEEEEECHHHHHHHHHCC--CCCCEEEECCCCCCCCH T ss_conf 997439985308663245407--88898998999864427 No 19 >2f8l_A Hypothetical protein LMO1582; 16411011, structural genomics, PSI, protein structure initiative, joint center for structural genomics; HET: MSE SAM; 2.20A {Listeria monocytogenes} SCOP: c.66.1.45 Probab=98.93 E-value=1.6e-08 Score=71.92 Aligned_cols=178 Identities=9% Similarity=0.093 Sum_probs=108.7 Q ss_pred CCCCCCCCCCCCCCCHHHHHHHHHHC----CCCCCCEEEEECCCCCHHHHHHHHC------CCCEEEEECCCCCCHHHHH Q ss_conf 89843365841123989999999971----9899987999758988234677502------3525998425543036887 Q gi|254780398|r 18 KIIPKKYMGQNFLLDLNILKKIAESS----GSLDGITVIEIGAGPGNLTQMLLTL------GARKVIVIEKDQQFFPILK 87 (284) Q Consensus 18 ~~~p~k~lGQnFL~d~~i~~~iv~~~----~~~~~~~VlEIGpG~G~LT~~Ll~~------~~~~v~aiEiD~~~~~~l~ 87 (284) ..+-.+..||.| +-+.++.-|+..+ +..++..|++.|||.|.+..+++++ ...+++++|+|+.++..++ T Consensus 98 ~~~~~~~~g~~~-TP~~i~~~m~~l~~~~~~~~~~~~vlDp~cGsG~~l~~~~~~l~~~~~~~~~~~g~di~~~~~~~a~ 176 (344) T 2f8l_A 98 GMKHGIQVNHQM-TPDSIGFIVAYLLEKVIQKKKNVSILDPACGTANLLTTVINQLELKGDVDVHASGVDVDDLLISLAL 176 (344) T ss_dssp HTSSSCCGGGCC-CCHHHHHHHHHHHHHHHTTCSEEEEEETTCTTSHHHHHHHHHHHTTSSCEEEEEEEESCHHHHHHHH T ss_pred HHHHCCCCCEEC-CCHHHHHHHHHHHHHHHCCCCCCEEEECCCCCCHHHHHHHHHHHHCCCCCEEEEEEECCHHHHHHHH T ss_conf 998436488137-8489999999999998378999889954899668999999998753677618999989999999999 Q ss_pred HHHHHHHCCCCCCHHHHCCCCHHHHCCCCCCEEEEECCCHHHHHH---------------------HHHHHHHHHCCCCC Q ss_conf 875322001220000000143155213322201120232246788---------------------99999852010000 Q gi|254780398|r 88 DISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTR---------------------LLFNWISADTWPPF 146 (284) Q Consensus 88 ~~~~~~~~~~~ii~~Dal~~d~~~~~~~~~~~~vvgNLPYnIss~---------------------Il~~ll~~~~~~~~ 146 (284) ....-......++++|.+......-+ -.||||.||+.... ++.+.+.. ..+.+ T Consensus 177 ~n~~~~~~~~~~~~~d~~~~~~~~~f-----D~iv~NPP~~~~~~~~~~~~~~~~~~~~~~~~~~~fi~~~~~~-Lk~~G 250 (344) T 2f8l_A 177 VGADLQRQKMTLLHQDGLANLLVDPV-----DVVISDLPVGYYPDDENAKTFELCREEGHSFAHFLFIEQGMRY-TKPGG 250 (344) T ss_dssp HHHHHHTCCCEEEESCTTSCCCCCCE-----EEEEEECCCSEESCHHHHTTSTTCCSSSCEEHHHHHHHHHHHT-EEEEE T ss_pred HCCCCCCCHHHHHCCCCCCCCCCCCC-----CCCCCCCCCCCCCCHHHHHHHCCCCCCCCCHHHHHHHHHHHHH-CCCCC T ss_conf 64000222123310011001346776-----7211579966763002444200013577425999999999985-48886 Q ss_pred CCHHHHEEEHHHHHHHHHCCCHHHHHHHHHHHCCCCCEEEECCCCCCEECCCCCCCEEEEEECCCC Q ss_conf 001102033447887530123123323454320133201200011000010578757887301258 Q gi|254780398|r 147 WESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFPSPKVTSTVIHFIPHL 212 (284) Q Consensus 147 ~~~~vlmvQkEvA~Rl~a~pg~k~Yg~LSv~~q~~~~v~~~~~V~~~~F~P~PkVdS~vi~l~pk~ 212 (284) .+++++-.-+ ... +.+..+--...-.+.++.+...|.+.|.+ ..|.++++.+.++. T Consensus 251 --~~~~I~P~~~----l~~---~~~~~lR~~L~~~~~i~~ii~Lp~~~F~~-~~~~t~Ilvl~K~~ 306 (344) T 2f8l_A 251 --YLFFLVPDAM----FGT---SDFAKVDKFIKKNGHIEGIIKLPETLFKS-EQARKSILILEKAD 306 (344) T ss_dssp --EEEEEEEGGG----GGS---TTHHHHHHHHHHHEEEEEEEECCGGGSCC--CCCEEEEEEEECC T ss_pred --EEEEEECCHH----CCC---CHHHHHHHHHHHCCCEEEEEECCCCCCCC-CCCCEEEEEEECCC T ss_conf --2999966431----168---46999999998589189986578211799-99876999998789 No 20 >1vbf_A 231AA long hypothetical protein-L-isoaspartate O- methyltransferase; trimeric coiled coil assembly, inter-subunit disulfide bridge; 2.80A {Sulfolobus tokodaii} SCOP: c.66.1.7 Probab=98.92 E-value=4.5e-09 Score=75.39 Aligned_cols=77 Identities=21% Similarity=0.277 Sum_probs=68.0 Q ss_pred CCCCHHHHHHHHHHCCCCCCCEEEEECCCCCHHHHHHHHCCCCEEEEECCCCCCHHHHHHHHHHHHCCCCCCHHHHCCC Q ss_conf 1239899999999719899987999758988234677502352599842554303688787532200122000000014 Q gi|254780398|r 29 FLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKV 107 (284) Q Consensus 29 FL~d~~i~~~iv~~~~~~~~~~VlEIGpG~G~LT~~Ll~~~~~~v~aiEiD~~~~~~l~~~~~~~~~~~~ii~~Dal~~ 107 (284) ++..+.+..++.+.+++.+++.|||||+|+|.+|..|++.. .+|+++|+|+.+++.+++.+.... +++++++|.... T Consensus 52 ~~s~p~~~a~~l~~L~l~~g~~VLeIG~GsGy~ta~La~l~-~~V~~vE~~~~~~~~A~~~~~~~~-nv~~~~gDg~~g 128 (231) T 1vbf_A 52 NTTALNLGIFMLDELDLHKGQKVLEIGTGIGYYTALIAEIV-DKVVSVEINEKMYNYASKLLSYYN-NIKLILGDGTLG 128 (231) T ss_dssp EECCHHHHHHHHHHTTCCTTCEEEEECCTTSHHHHHHHHHS-SEEEEEESCHHHHHHHHHHHTTCS-SEEEEESCGGGC T ss_pred EECCHHHHHHHHHHCCCCCCCEEEEECCCCCHHHHHHHHHC-CEEEEECCCHHHHHHHHHHHCCCC-EEEEEECCHHCC T ss_conf 10148999999997189997989997798778899999856-787676289999999998740686-268986632028 No 21 >1xxl_A YCGJ protein; structural genomics, protein structure initiative, PSI, NEW YORK SGX research center for structural genomics, nysgxrc; 2.10A {Bacillus subtilis} SCOP: c.66.1.41 PDB: 2glu_A* Probab=98.90 E-value=3e-09 Score=76.49 Aligned_cols=77 Identities=14% Similarity=0.250 Sum_probs=65.5 Q ss_pred HHHHHHHHHHCCCCCCCEEEEECCCCCHHHHHHHHCCCCEEEEECCCCCCHHHHHHHHHHHH-CCCCCCHHHHCCCCHH Q ss_conf 89999999971989998799975898823467750235259984255430368878753220-0122000000014315 Q gi|254780398|r 33 LNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQHP-NRLEIIQDDALKVDFE 110 (284) Q Consensus 33 ~~i~~~iv~~~~~~~~~~VlEIGpG~G~LT~~Ll~~~~~~v~aiEiD~~~~~~l~~~~~~~~-~~~~ii~~Dal~~d~~ 110 (284) -..+-.+++.+++.+++.|||||||+|.+|..|+++++ +|++||+.+.+++.+++...... .+++++++|+.+++++ T Consensus 7 ~~~~~~l~~~~~~~pg~rVLDiGCGtG~~~~~la~~~~-~v~gvD~S~~ml~~A~~~~~~~~~~~~~~~~~d~~~l~~~ 84 (239) T 1xxl_A 7 HHSLGLMIKTAECRAEHRVLDIGAGAGHTALAFSPYVQ-ECIGVDATKEMVEVASSFAQEKGVENVRFQQGTAESLPFP 84 (239) T ss_dssp HHHHHHHHHHHTCCTTCEEEEESCTTSHHHHHHGGGSS-EEEEEESCHHHHHHHHHHHHHHTCCSEEEEECBTTBCCSC T ss_pred HHHHHHHHHHHCCCCCCEEEEECCCCCHHHHHHHHCCC-EEEEEECCHHHHHHHHHHHHHCCCCCCEEEECCCCCCCCC T ss_conf 65899999985899989899958868599999997099-7999979999999999865430565400010222356888 No 22 >1l3i_A Precorrin-6Y methyltransferase/putative decarboxylase; structural genomics, beta barrel, rossmann fold, tetramer; HET: SAH; 1.95A {Methanothermobacterthermautotrophicus} SCOP: c.66.1.22 PDB: 1kxz_A 1l3b_A 1f38_A 1l3c_A* Probab=98.87 E-value=1.1e-08 Score=73.02 Aligned_cols=103 Identities=14% Similarity=0.104 Sum_probs=78.4 Q ss_pred CCHHHHHHHHHHCCCCCCCEEEEECCCCCHHHHHHHHCCCCEEEEECCCCCCHHHHHHHHHHH--HCCCCCCHHHHCCCC Q ss_conf 398999999997198999879997589882346775023525998425543036887875322--001220000000143 Q gi|254780398|r 31 LDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQH--PNRLEIIQDDALKVD 108 (284) Q Consensus 31 ~d~~i~~~iv~~~~~~~~~~VlEIGpG~G~LT~~Ll~~~~~~v~aiEiD~~~~~~l~~~~~~~--~~~~~ii~~Dal~~d 108 (284) +.+.+...+...+.+.+++.|||||||.|.+|..+++.+ .+|++||+|+.+++.+++....+ .++++++++|+.+.. T Consensus 17 t~~e~~a~il~~l~~~~g~~VLDiGcG~G~~s~~la~~~-~~V~avD~~~~~~~~a~~~~~~~gl~~~v~~~~gd~~~~~ 95 (192) T 1l3i_A 17 TAMEVRCLIMCLAEPGKNDVAVDVGCGTGGVTLELAGRV-RRVYAIDRNPEAISTTEMNLQRHGLGDNVTLMEGDAPEAL 95 (192) T ss_dssp CCHHHHHHHHHHHCCCTTCEEEEESCTTSHHHHHHHTTS-SEEEEEESCHHHHHHHHHHHHHTTCCTTEEEEESCHHHHH T ss_pred CHHHHHHHHHHHCCCCCCCEEEEEECCHHHHHHHHHHCC-CEEEEEECCCHHHHHHHHHHHHCCCCCCEEEEECCHHHCC T ss_conf 869999999986699997999998387049999998439-9999999062889999999998099988899988621053 Q ss_pred HHHHCCCCCCEEEEECCCHHHHHHHHHHHH Q ss_conf 155213322201120232246788999998 Q gi|254780398|r 109 FEKFFNISSPIRIIANLPYNIGTRLLFNWI 138 (284) Q Consensus 109 ~~~~~~~~~~~~vvgNLPYnIss~Il~~ll 138 (284) .+ ....-.|+.+....-...++..+. T Consensus 96 ~~----~~~~D~v~~~~~~~~~~~~l~~~~ 121 (192) T 1l3i_A 96 CK----IPDIDIAVVGGSGGELQEILRIIK 121 (192) T ss_dssp TT----SCCEEEEEESCCTTCHHHHHHHHH T ss_pred CC----CCCCCEEEEECCHHHHHHHHHHHH T ss_conf 00----088688999180346999999999 No 23 >1yb2_A Hypothetical protein TA0852; structural genomics, methyltransferase, midwest center for structural genomics, MCSG; 2.01A {Thermoplasma acidophilum dsm 1728} SCOP: c.66.1.13 Probab=98.87 E-value=2.8e-09 Score=76.64 Aligned_cols=87 Identities=21% Similarity=0.374 Sum_probs=68.0 Q ss_pred HHHHHHHCCCCCCCEEEEECCCCCHHHHHHHHC-CCC-EEEEECCCCCCHHHHHHHHHHHH--CCCCCCHHHHCCCCHHH Q ss_conf 999999719899987999758988234677502-352-59984255430368878753220--01220000000143155 Q gi|254780398|r 36 LKKIAESSGSLDGITVIEIGAGPGNLTQMLLTL-GAR-KVIVIEKDQQFFPILKDISSQHP--NRLEIIQDDALKVDFEK 111 (284) Q Consensus 36 ~~~iv~~~~~~~~~~VlEIGpG~G~LT~~Ll~~-~~~-~v~aiEiD~~~~~~l~~~~~~~~--~~~~ii~~Dal~~d~~~ 111 (284) +-.|+..+++.+++.|||+|+|.|++|..|++. ++. +|+++|+++.+++.+++.+..+. ++++++++|+.+.-.+. T Consensus 99 ~~~Ii~~l~i~PG~rVLEiG~GsG~lt~~LA~~v~~~g~V~~vD~~e~~~~~A~~n~~~~~~~~nV~~~~~Di~e~~~~~ 178 (275) T 1yb2_A 99 ASYIIMRCGLRPGMDILEVGVGSGNMSSYILYALNGKGTLTVVERDEDNLKKAMDNLSEFYDIGNVRTSRSDIADFISDQ 178 (275) T ss_dssp -------CCCCTTCEEEEECCTTSHHHHHHHHHHTTSSEEEEECSCHHHHHHHHHHHHTTSCCTTEEEECSCTTTCCCSC T ss_pred HHHHHHHCCCCCCCEEEEECCCCCHHHHHHHHHCCCCCEEEEEECCHHHHHHHHHHHHHHCCCCCCHHEEHHHHHCCCCC T ss_conf 99999971999979899957718789999998608995899990889999999986776315675211101122102444 Q ss_pred HCCCCCCEEEEECCCH Q ss_conf 2133222011202322 Q gi|254780398|r 112 FFNISSPIRIIANLPY 127 (284) Q Consensus 112 ~~~~~~~~~vvgNLPY 127 (284) .+ -.|+-++|= T Consensus 179 ~f-----D~V~ld~p~ 189 (275) T 1yb2_A 179 MY-----DAVIADIPD 189 (275) T ss_dssp CE-----EEEEECCSC T ss_pred CC-----CCEEEECCC T ss_conf 23-----305870568 No 24 >1wzn_A SAM-dependent methyltransferase; structural genomics, riken structural genomics/proteomics initiative, RSGI; HET: SAH; 1.90A {Pyrococcus horikoshii OT3} SCOP: c.66.1.43 Probab=98.86 E-value=5.1e-09 Score=75.05 Aligned_cols=77 Identities=17% Similarity=0.367 Sum_probs=65.7 Q ss_pred HHHHHHHHHCCCCCCCEEEEECCCCCHHHHHHHHCCCCEEEEECCCCCCHHHHHHHHHHHHCCCCCCHHHHCCCCHHH Q ss_conf 999999997198999879997589882346775023525998425543036887875322001220000000143155 Q gi|254780398|r 34 NILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEK 111 (284) Q Consensus 34 ~i~~~iv~~~~~~~~~~VlEIGpG~G~LT~~Ll~~~~~~v~aiEiD~~~~~~l~~~~~~~~~~~~ii~~Dal~~d~~~ 111 (284) ..+.++++...+.+...|||||||+|.+|..|++.++ +|++||+++.+++.++++......+++++++|+.++++++ T Consensus 28 ~~~~~~~~~~~~~~~~~ILDiGcGtG~~~~~l~~~g~-~v~gvD~s~~ml~~a~~~~~~~~~~~~~~~~d~~~l~~~~ 104 (252) T 1wzn_A 28 DFVEEIFKEDAKREVRRVLDLACGTGIPTLELAERGY-EVVGLDLHEEMLRVARRKAKERNLKIEFLQGDVLEIAFKN 104 (252) T ss_dssp HHHHHHHHHTCSSCCCEEEEETCTTCHHHHHHHHTTC-EEEEEESCHHHHHHHHHHHHHTTCCCEEEESCGGGCCCCS T ss_pred HHHHHHHHHHCCCCCCEEEEECCCCCHHHHHHHHCCC-EEEEEECCHHHHHHHHHHHHHCCCCCEEEECCHHHCCCCC T ss_conf 9999999973578989899954758699999997699-8999974688999999977642875236865542056677 No 25 >1dl5_A Protein-L-isoaspartate O-methyltransferase; isoaspartyl residues, protein repair, deamidation, post-translational modification; HET: SAH; 1.80A {Thermotoga maritima} SCOP: c.66.1.7 d.197.1.1 Probab=98.83 E-value=1e-08 Score=73.20 Aligned_cols=82 Identities=18% Similarity=0.186 Sum_probs=68.3 Q ss_pred CCCCHHHHHHHHHHCCCCCCCEEEEECCCCCHHHHHHHHCC--CCEEEEECCCCCCHHHHHHHHHHHH-CCCCCCHHHHC Q ss_conf 12398999999997198999879997589882346775023--5259984255430368878753220-01220000000 Q gi|254780398|r 29 FLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLG--ARKVIVIEKDQQFFPILKDISSQHP-NRLEIIQDDAL 105 (284) Q Consensus 29 FL~d~~i~~~iv~~~~~~~~~~VlEIGpG~G~LT~~Ll~~~--~~~v~aiEiD~~~~~~l~~~~~~~~-~~~~ii~~Dal 105 (284) .+.-+.+..++++.+++.+++.|||||+|+|..|..|++.. ..+|++||+|+.+++.+++.+.... +++++++||+. T Consensus 57 tis~P~~~A~ml~~L~l~~g~~VLeIGtGtGy~aa~la~~~~~~~~V~~iE~~~~l~~~A~~~l~~~g~~nv~~~~gD~~ 136 (317) T 1dl5_A 57 TSSQPSLMALFMEWVGLDKGMRVLEIGGGTGYNAAVMSRVVGEKGLVVSVEYSRKICEIAKRNVERLGIENVIFVCGDGY 136 (317) T ss_dssp EECCHHHHHHHHHHTTCCTTCEEEEECCTTSHHHHHHHHHHCTTCEEEEEESCHHHHHHHHHHHHHTTCCSEEEEESCGG T ss_pred EECHHHHHHHHHHHCCCCCCCEEEEECCCCCHHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHHCCCCEEEEECCHH T ss_conf 62679999999997189999989991797647689998861888679999578178999999899735787399989557 Q ss_pred CCCHH Q ss_conf 14315 Q gi|254780398|r 106 KVDFE 110 (284) Q Consensus 106 ~~d~~ 110 (284) +...+ T Consensus 137 ~g~~~ 141 (317) T 1dl5_A 137 YGVPE 141 (317) T ss_dssp GCCGG T ss_pred HCCCC T ss_conf 58877 No 26 >2b3t_A Protein methyltransferase HEMK; translation termination, methylation, conformational changes; HET: SAH; 3.10A {Escherichia coli} SCOP: c.66.1.30 PDB: 1t43_A* Probab=98.80 E-value=1.1e-08 Score=72.89 Aligned_cols=104 Identities=12% Similarity=0.223 Sum_probs=75.3 Q ss_pred CCCCCCCCCCHHH----------HHHHHHHCCCCCCCEEEEECCCCCHHHHHHHHCCCC-EEEEECCCCCCHHHHHHHHH Q ss_conf 3658411239899----------999999719899987999758988234677502352-59984255430368878753 Q gi|254780398|r 23 KYMGQNFLLDLNI----------LKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGAR-KVIVIEKDQQFFPILKDISS 91 (284) Q Consensus 23 k~lGQnFL~d~~i----------~~~iv~~~~~~~~~~VlEIGpG~G~LT~~Ll~~~~~-~v~aiEiD~~~~~~l~~~~~ 91 (284) -=+|-.|.+|+++ ++...+... .....|+|+|+|.|.+...++...+. +|+++|+++..+..++++.. T Consensus 76 ~F~g~~f~v~~~vlIPRpeTE~lv~~~l~~~~-~~~~~ilDlgtGsG~I~i~la~~~p~~~v~a~Dis~~Al~~A~~Na~ 154 (276) T 2b3t_A 76 EFWSLPLFVSPATLIPRPDTECLVEQALARLP-EQPCRILDLGTGTGAIALALASERPDCEIIAVDRMPDAVSLAQRNAQ 154 (276) T ss_dssp EETTEEEECCTTSCCCCTTHHHHHHHHHHHSC-SSCCEEEEETCTTSHHHHHHHHHCTTSEEEEECSSHHHHHHHHHHHH T ss_pred EECCCEEEECCCCCCCCCHHHHHHHHHHHHCC-CCCCEEEEECCCCHHHHHHHHHHCCCCEEEEECCCHHHHHHHHHHHH T ss_conf 78792787588770699769999999987514-57861764146532999999986898758864176688999999999 Q ss_pred HHH-CCCCCCHHHHCCCCHHHHCCCCCCEEEEECCCHHHHHH Q ss_conf 220-01220000000143155213322201120232246788 Q gi|254780398|r 92 QHP-NRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTR 132 (284) Q Consensus 92 ~~~-~~~~ii~~Dal~~d~~~~~~~~~~~~vvgNLPYnIss~ 132 (284) .+. .+++++++|.+..... +.--.||+|.||--++. T Consensus 155 ~~~~~~v~~~~~D~~~~~~~-----~~fDlIvsNPPYi~~~~ 191 (276) T 2b3t_A 155 HLAIKNIHILQSDWFSALAG-----QQFAMIVSNPPYIDEQD 191 (276) T ss_dssp HHTCCSEEEECCSTTGGGTT-----CCEEEEEECCCCBCTTC T ss_pred HCCCCCEEEEECCCCCCCCC-----CCEEEEEECCCCCCHHH T ss_conf 74998779997576433678-----84157885698677134 No 27 >1i9g_A Hypothetical protein RV2118C; mtase, adoMet, crystal, structural genomics, PSI, protein structure initiative; HET: SAM; 1.98A {Mycobacterium tuberculosis} SCOP: c.66.1.13 Probab=98.80 E-value=1.9e-08 Score=71.52 Aligned_cols=169 Identities=17% Similarity=0.141 Sum_probs=102.9 Q ss_pred CCCHHHHHHHHHHCCCCCCCEEEEECCCCCHHHHHHHHC-CCC-EEEEECCCCCCHHHHHHHHHHH----HCCCCCCHHH Q ss_conf 239899999999719899987999758988234677502-352-5998425543036887875322----0012200000 Q gi|254780398|r 30 LLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTL-GAR-KVIVIEKDQQFFPILKDISSQH----PNRLEIIQDD 103 (284) Q Consensus 30 L~d~~i~~~iv~~~~~~~~~~VlEIGpG~G~LT~~Ll~~-~~~-~v~aiEiD~~~~~~l~~~~~~~----~~~~~ii~~D 103 (284) .+-+.-+..|+..+++.+++.|||+|+|.|++|..|++. ++. +|+++|+++.+++.+++++..+ ..+++++++| T Consensus 82 iiypkD~~~Ii~~ldi~PG~~VLE~GtGsG~lT~~LAr~vgp~G~V~t~D~~~~~~~~Ar~n~~~~~~~~~~nv~~~~~d 161 (280) T 1i9g_A 82 VIYPKDAAQIVHEGDIFPGARVLEAGAGSGALTLSLLRAVGPAGQVISYEQRADHAEHARRNVSGCYGQPPDNWRLVVSD 161 (280) T ss_dssp CCCHHHHHHHHHHTTCCTTCEEEEECCTTSHHHHHHHHHHCTTSEEEEECSCHHHHHHHHHHHHHHHTSCCTTEEEECSC T ss_pred CCCHHHHHHHHHHHCCCCCCEEEEEEECCHHHHHHHHHHHCCCEEEEEEECCHHHHHHHHHHHHHHCCCCCCEEEEEECC T ss_conf 55858999999984999999899922761599999999749985999995899999999985554315788629999555 Q ss_pred HCCCCHHHHCCCCCCEEEEECCCHHHHHHHHHHHHHHHCCCCCCCHHHHEEEHHHHHHHHHCCCHHHHHHHHHHHCCCCC Q ss_conf 00143155213322201120232246788999998520100000011020334478875301231233234543201332 Q gi|254780398|r 104 ALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTK 183 (284) Q Consensus 104 al~~d~~~~~~~~~~~~vvgNLPYnIss~Il~~ll~~~~~~~~~~~~vlmvQkEvA~Rl~a~pg~k~Yg~LSv~~q~~~~ 183 (284) +.+..+++- .--.|+-.+|-- ...+..+... ..|. ..-+++.-.-|=.+|++..-... ..|.+ T Consensus 162 ~~~~~~~~~----~fD~VflDlp~P--~~~l~~~~~~-LkpG-G~lv~~~P~i~Qv~~~~~al~~~---------~~f~~ 224 (280) T 1i9g_A 162 LADSELPDG----SVDRAVLDMLAP--WEVLDAVSRL-LVAG-GVLMVYVATVTQLSRIVEALRAK---------QCWTE 224 (280) T ss_dssp GGGCCCCTT----CEEEEEEESSCG--GGGHHHHHHH-EEEE-EEEEEEESSHHHHHHHHHHHHHH---------SSBCC T ss_pred CCCCCCCCC----CCCEEEECCCCH--HHHHHHHHHH-CCCC-CEEEEECCCHHHHHHHHHHHHHH---------CCCCC T ss_conf 122556678----878689727888--9999999984-4779-89999939899999999999973---------89877 Q ss_pred EEEE------CCCCCCEECCCC--CCCEEEEEECCCCCCC Q ss_conf 0120------001100001057--8757887301258855 Q gi|254780398|r 184 ATMM------FDISPHVFFPSP--KVTSTVIHFIPHLNPI 215 (284) Q Consensus 184 v~~~------~~V~~~~F~P~P--kVdS~vi~l~pk~~~~ 215 (284) ++.+ ..|.+....|.- --.++.+.+.+|-.+- T Consensus 225 i~~~E~l~R~~~v~~~~~RP~~~~v~HTgfl~~ark~~~~ 264 (280) T 1i9g_A 225 PRAWETLQRGWNVVGLAVRPQHSMRGHTAFLVATRRLAPG 264 (280) T ss_dssp CEEECCCCCCEEEETTEEEECSCCCCCSCEEEEEEBCCTT T ss_pred CEEEEEEEEEEEECCCEECCCCCCCCCHHHHHHHHHCCCC T ss_conf 5589998689886676248899885737998877660699 No 28 >3evz_A Methyltransferase; NYSGXRC, NEW YORK SGX research center for structural genomics, protein structure initiative, PSI-2; 2.20A {Pyrococcus furiosus} Probab=98.79 E-value=9.5e-09 Score=73.35 Aligned_cols=98 Identities=20% Similarity=0.156 Sum_probs=70.5 Q ss_pred CCCCCHHHHHHHHHHCCCCCCCEEEEECCCCCHHHHHHHHCCCC-EEEEECCCCCCHHHHHHHHHHHH--CCCCCCHHHH Q ss_conf 11239899999999719899987999758988234677502352-59984255430368878753220--0122000000 Q gi|254780398|r 28 NFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGAR-KVIVIEKDQQFFPILKDISSQHP--NRLEIIQDDA 104 (284) Q Consensus 28 nFL~d~~i~~~iv~~~~~~~~~~VlEIGpG~G~LT~~Ll~~~~~-~v~aiEiD~~~~~~l~~~~~~~~--~~~~ii~~Da 104 (284) ..|+-+...+.++......+++.|||||+|.|.++..++++.+. +|+++|+++..++.+++....+. .++....+|. T Consensus 36 ~~liP~~~~~~l~~~~~~~~~~~vLDig~G~G~~~~~~a~~~~~~~v~~vDi~~~~~~~a~~n~~~~~~~~~i~~~~~~~ 115 (230) T 3evz_A 36 KGLVTTPISRYIFLKTFLRGGEVALEIGTGHTAMMALMAEKFFNCKVTATEVDEEFFEYARRNIERNNSNVRLVKSNGGI 115 (230) T ss_dssp TSCCCCHHHHHHHHHTTCCSSCEEEEECCTTTCHHHHHHHHHHCCEEEEEECCHHHHHHHHHHHHHTTCCCEEEECSSCS T ss_pred CCCCCCCHHHHHHHHHCCCCCCEEEEEECCHHHHHHHHHHHCCCCEEEEEECCCCHHHHHHHHHHHCCCCCEEEEEECCC T ss_conf 95149837799999845789898999407443999999997799879999886311246776688606651799852110 Q ss_pred CCCCHHHHCCCCCCEEEEECCCHHHH Q ss_conf 01431552133222011202322467 Q gi|254780398|r 105 LKVDFEKFFNISSPIRIIANLPYNIG 130 (284) Q Consensus 105 l~~d~~~~~~~~~~~~vvgNLPYnIs 130 (284) ++... .+.--.||+|.||.-+ T Consensus 116 ~~~~~-----~~~fD~Iv~NPPy~~~ 136 (230) T 3evz_A 116 IKGVV-----EGTFDVIFSAPPYYDK 136 (230) T ss_dssp STTTC-----CSCEEEEEECCCCC-- T ss_pred HHHCC-----CCCCCEEEECCCCCCC T ss_conf 12135-----7652489989995566 No 29 >3mti_A RRNA methylase; SAM-dependent, PSI, MCSG, structural genomics, midwest cente structural genomics, protein structure initiative; 1.95A {Streptococcus thermophilus} Probab=98.79 E-value=1.7e-08 Score=71.73 Aligned_cols=91 Identities=22% Similarity=0.212 Sum_probs=67.4 Q ss_pred HHHHHHHHCCCCCCCEEEEECCCCCHHHHHHHHCCCCEEEEECCCCCCHHHHHHHHHHHH-CCCCCCHHHHCCCCHHHHC Q ss_conf 999999971989998799975898823467750235259984255430368878753220-0122000000014315521 Q gi|254780398|r 35 ILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQHP-NRLEIIQDDALKVDFEKFF 113 (284) Q Consensus 35 i~~~iv~~~~~~~~~~VlEIGpG~G~LT~~Ll~~~~~~v~aiEiD~~~~~~l~~~~~~~~-~~~~ii~~Dal~~d~~~~~ 113 (284) ..+.++... +.+++.||++|||.|..|..|++. ..+|+|+|+++.+++.+++...... .+++++++|+-.++ ... T Consensus 11 ~~~~~l~~~-l~~~~~VLD~gcG~G~~t~~LA~~-~~~V~aiDis~~al~~a~~n~~~~~l~nv~~~~~~~~~l~--~~~ 86 (185) T 3mti_A 11 MSHDFLAEV-LDDESIVVDATMGNGNDTAFLAGL-SKKVYAFDVQEQALGKTSQRLSDLGIENTELILDGHENLD--HYV 86 (185) T ss_dssp HHHHHHHTT-CCTTCEEEESCCTTSHHHHHHHTT-SSEEEEEESCHHHHHHHHHHHHHHTCCCEEEEESCGGGGG--GTC T ss_pred HHHHHHHHH-CCCCCEEEEEEEECCHHHHHHHHC-CCEEEECCCCHHHHHHHHHHHHHCCCCCEEEEECCHHHHH--HHC T ss_conf 999999965-899999999963888999999826-9989975898788878999999829984899993677755--513 Q ss_pred CCCCCEEEEECCCHHHH Q ss_conf 33222011202322467 Q gi|254780398|r 114 NISSPIRIIANLPYNIG 130 (284) Q Consensus 114 ~~~~~~~vvgNLPYnIs 130 (284) .+....++.|+||.-. T Consensus 87 -~~~~~~v~~~~~~~~~ 102 (185) T 3mti_A 87 -REPIRAAIFNLGYLPS 102 (185) T ss_dssp -CSCEEEEEEEEC---- T ss_pred -CCCCCEEEEECCCCCC T ss_conf -5666569995265677 No 30 >3kkz_A Uncharacterized protein Q5LES9; putative methyltransferase, BFR250, NESG, structural genomics, PSI-2; HET: SAM; 1.68A {Bacteroides fragilis nctc 9343} PDB: 3e7p_A Probab=98.78 E-value=1.1e-08 Score=72.90 Aligned_cols=80 Identities=19% Similarity=0.188 Sum_probs=64.0 Q ss_pred CHHHHHHHHHHCC-CCCCCEEEEECCCCCHHHHHHHHCCCCEEEEECCCCCCHHHHHHHHHHH--HCCCCCCHHHHCCCC Q ss_conf 9899999999719-8999879997589882346775023525998425543036887875322--001220000000143 Q gi|254780398|r 32 DLNILKKIAESSG-SLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQH--PNRLEIIQDDALKVD 108 (284) Q Consensus 32 d~~i~~~iv~~~~-~~~~~~VlEIGpG~G~LT~~Ll~~~~~~v~aiEiD~~~~~~l~~~~~~~--~~~~~ii~~Dal~~d 108 (284) ....+.++...+. ..++..|||||||+|..|..|++....+|++||+++.+++.+++..... .++++++++|+.+++ T Consensus 30 ~~e~~~~~l~~l~~l~~~~~VLDIGCG~G~~~~~lA~~~~~~V~giD~s~~~l~~a~~~~~~~~l~~~v~~~~~d~~~l~ 109 (267) T 3kkz_A 30 SPEVTLKALSFIDNLTEKSLIADIGCGTGGQTMVLAGHVTGQVTGLDFLSGFIDIFNRNARQSGLQNRVTGIVGSMDDLP 109 (267) T ss_dssp CHHHHHHHHTTCCCCCTTCEEEEETCTTCHHHHHHHTTCSSEEEEEESCHHHHHHHHHHHHHTTCTTTEEEEECCTTSCC T ss_pred CHHHHHHHHHHCCCCCCCCEEEEECCCCCHHHHHHHHHCCCEEEEEECCCHHHHHHHHHCCCCCCCCCCCHHHCCCCCCC T ss_conf 89999999981727999998999627897999999974799899997973165898873232344433100100123567 Q ss_pred HHH Q ss_conf 155 Q gi|254780398|r 109 FEK 111 (284) Q Consensus 109 ~~~ 111 (284) +++ T Consensus 110 ~~~ 112 (267) T 3kkz_A 110 FRN 112 (267) T ss_dssp CCT T ss_pred CCC T ss_conf 788 No 31 >2esr_A Methyltransferase; structural genomics, hypothetical protein, PSI, protein structure initiative; HET: GLC; 1.80A {Streptococcus pyogenes MGAS10394} SCOP: c.66.1.46 Probab=98.78 E-value=7.5e-09 Score=74.00 Aligned_cols=94 Identities=20% Similarity=0.302 Sum_probs=70.7 Q ss_pred HHHHHHHHCC-CCCCCEEEEECCCCCHHHHHHHHCCCCEEEEECCCCCCHHHHHHHHHHH--HCCCCCCHHHHCCCCHHH Q ss_conf 9999999719-8999879997589882346775023525998425543036887875322--001220000000143155 Q gi|254780398|r 35 ILKKIAESSG-SLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQH--PNRLEIIQDDALKVDFEK 111 (284) Q Consensus 35 i~~~iv~~~~-~~~~~~VlEIGpG~G~LT~~Ll~~~~~~v~aiEiD~~~~~~l~~~~~~~--~~~~~ii~~Dal~~d~~~ 111 (284) +-+.+...+. ..++..||++|+|.|+++...+.++|++|++||.|+..++.+++..... .++++++++|+.++- +. T Consensus 18 vre~lfn~L~~~~~g~~vLDl~~GsG~~~iea~~r~a~~v~~ve~~~~a~~~~~~n~~~~~~~~~v~ii~~D~~~~l-~~ 96 (177) T 2esr_A 18 VRGAIFNMIGPYFNGGRVLDLFAGSGGLAIEAVSRGMSAAVLVEKNRKAQAIIQDNIIMTKAENRFTLLKMEAERAI-DC 96 (177) T ss_dssp CHHHHHHHHCSCCCSCEEEEETCTTCHHHHHHHHTTCCEEEEECCCHHHHHHHHHHHHTTTCGGGEEEECSCHHHHH-HH T ss_pred HHHHHHHHHHHHCCCCEEEECCEEHHHHHHHHHHCCCCCCEEEECHHHHHHHHHHHHHHHCCCCCEEEEECCHHHHH-HC T ss_conf 99999998775569897999950379999999973862016783428899988875765135551024531155554-31 Q ss_pred HCCCCCCEEEEECCCHHHHH Q ss_conf 21332220112023224678 Q gi|254780398|r 112 FFNISSPIRIIANLPYNIGT 131 (284) Q Consensus 112 ~~~~~~~~~vvgNLPYnIss 131 (284) .. +.--.|+.+.||.-.. T Consensus 97 -~~-~~fDiI~~DPPy~~~~ 114 (177) T 2esr_A 97 -LT-GRFDLVFLDPPYAKET 114 (177) T ss_dssp -BC-SCEEEEEECCSSHHHH T ss_pred -CC-CCCCEEEECCCCCCHH T ss_conf -34-6788688799743116 No 32 >2yxd_A Probable cobalt-precorrin-6Y C(15)- methyltransferase [decarboxylating]; alpha and beta protein (A/B) class; HET: MES; 2.30A {Methanocaldococcus jannaschii DSM2661} Probab=98.78 E-value=1.4e-08 Score=72.24 Aligned_cols=77 Identities=17% Similarity=0.172 Sum_probs=64.6 Q ss_pred CCCHHHHHHHHHHCCCCCCCEEEEECCCCCHHHHHHHHCCCCEEEEECCCCCCHHHHHHHHHHHH-CCCCCCHHHHCCC Q ss_conf 23989999999971989998799975898823467750235259984255430368878753220-0122000000014 Q gi|254780398|r 30 LLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQHP-NRLEIIQDDALKV 107 (284) Q Consensus 30 L~d~~i~~~iv~~~~~~~~~~VlEIGpG~G~LT~~Ll~~~~~~v~aiEiD~~~~~~l~~~~~~~~-~~~~ii~~Dal~~ 107 (284) ++-+.+-.-++..+++.+++.|||+|+|.|.+|..+++. +.+|+|||+|+.+++.++++...+. .++++++||+.+. T Consensus 18 ~Tk~evR~l~l~~L~l~~~~~VlDlg~G~G~~si~la~~-~~~V~ave~~~~~i~~a~~n~~~~gv~nv~~i~g~a~~~ 95 (183) T 2yxd_A 18 ITKEEIRAVSIGKLNLNKDDVVVDVGCGSGGMTVEIAKR-CKFVYAIDYLDGAIEVTKQNLAKFNIKNCQIIKGRAEDV 95 (183) T ss_dssp CCCHHHHHHHHHHHCCCTTCEEEEESCCCSHHHHHHHTT-SSEEEEEECSHHHHHHHHHHHHHTTCCSEEEEESCHHHH T ss_pred CCHHHHHHHHHHHCCCCCCCEEEEEECCCCHHHHHHHHH-CCEEEEEECCHHHHHHHHHHHHHCCCCCEEEEECCHHHH T ss_conf 787999999999769989499999617476999998873-899999979899999999999976899879994645656 No 33 >2fyt_A Protein arginine N-methyltransferase 3; structural genomics, structural genomics consortium, SGC; HET: SAH; 2.00A {Homo sapiens} SCOP: c.66.1.6 PDB: 1f3l_A* Probab=98.78 E-value=9.9e-09 Score=73.24 Aligned_cols=89 Identities=18% Similarity=0.295 Sum_probs=64.4 Q ss_pred CCCCCCCC--CCCHHHHHH----HHHHCCCCCCCEEEEECCCCCHHHHHHHHCCCCEEEEECCCCCCHHHHHHHHH-HHH Q ss_conf 33658411--239899999----99971989998799975898823467750235259984255430368878753-220 Q gi|254780398|r 22 KKYMGQNF--LLDLNILKK----IAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISS-QHP 94 (284) Q Consensus 22 ~k~lGQnF--L~d~~i~~~----iv~~~~~~~~~~VlEIGpG~G~LT~~Ll~~~~~~v~aiEiD~~~~~~l~~~~~-~~~ 94 (284) -..+++|| |.|..=.+. |.+.....+++.|||||+|+|.|+..+++.++++|+|||..+.+....+.... ... T Consensus 33 ~~~~~~h~~Ml~D~~R~~~y~~ai~~~~~~~~~k~VLDlGcGtG~ls~~aA~~Ga~~V~avd~s~~~~~a~~~~~~~~~~ 112 (340) T 2fyt_A 33 YGHYGIHEEMLKDKIRTESYRDFIYQNPHIFKDKVVLDVGCGTGILSMFAAKAGAKKVLGVDQSEILYQAMDIIRLNKLE 112 (340) T ss_dssp GGSHHHHHHHHTCHHHHHHHHHHHHHCGGGTTTCEEEEETCTTSHHHHHHHHTTCSEEEEEESSTHHHHHHHHHHHTTCT T ss_pred HCCCHHHHHHHCCHHHHHHHHHHHHHCCCCCCCCEEEEECCCCCHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHCCC T ss_conf 12745788773877789999999985721059698999327747999999975998899980989999999999974547 Q ss_pred CCCCCCHHHHCCCCHH Q ss_conf 0122000000014315 Q gi|254780398|r 95 NRLEIIQDDALKVDFE 110 (284) Q Consensus 95 ~~~~ii~~Dal~~d~~ 110 (284) .+++++++|+.+++++ T Consensus 113 ~~i~~i~~d~~~l~~~ 128 (340) T 2fyt_A 113 DTITLIKGKIEEVHLP 128 (340) T ss_dssp TTEEEEESCTTTSCCS T ss_pred CCEEEEEEEHHHCCCC T ss_conf 7516898148876476 No 34 >3e05_A Precorrin-6Y C5,15-methyltransferase (decarboxylating); porphyrin metabolism, S-adenosyl-methionine, structural genomics; 1.80A {Geobacter metallireducens gs-15} Probab=98.78 E-value=6.8e-08 Score=68.05 Aligned_cols=128 Identities=9% Similarity=0.078 Sum_probs=82.6 Q ss_pred CCCHHHHHHHHHHCCCCCCCEEEEECCCCCHHHHHHHHCCCC-EEEEECCCCCCHHHHHHHHHHHH-CCCCCCHHHHCCC Q ss_conf 239899999999719899987999758988234677502352-59984255430368878753220-0122000000014 Q gi|254780398|r 30 LLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGAR-KVIVIEKDQQFFPILKDISSQHP-NRLEIIQDDALKV 107 (284) Q Consensus 30 L~d~~i~~~iv~~~~~~~~~~VlEIGpG~G~LT~~Ll~~~~~-~v~aiEiD~~~~~~l~~~~~~~~-~~~~ii~~Dal~~ 107 (284) ++-+.+-.-+...+++.+++.|||||+|.|.+|..++...+. +|+|+|+|+..++.++++...+. .+++++++|+.+. T Consensus 23 ~tk~evra~~l~~L~l~pg~~VLDiG~GsG~la~~~a~~~~~~~V~aiD~~~~~~~~a~~n~~~~g~~~~~~~~g~~~~~ 102 (204) T 3e05_A 23 ITKQEVRAVTLSKLRLQDDLVMWDIGAGSASVSIEASNLMPNGRIFALERNPQYLGFIRDNLKKFVARNVTLVEAFAPEG 102 (204) T ss_dssp SCCHHHHHHHHHHTTCCTTCEEEEETCTTCHHHHHHHHHCTTSEEEEEECCHHHHHHHHHHHHHHTCTTEEEEECCTTTT T ss_pred CCHHHHHHHHHHHCCCCCCCEEEEEEEEHHHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHCCCCEEEEEECCCCCC T ss_conf 66899999999860999939999983107899999999789967999949999999999999981998589973453234 Q ss_pred CHHHHCCCCCCEEEEECCCHHHHHHHHHHHHHHHCCCCCCCHHHHEEEHHHHHHHH Q ss_conf 31552133222011202322467889999985201000000110203344788753 Q gi|254780398|r 108 DFEKFFNISSPIRIIANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERIT 163 (284) Q Consensus 108 d~~~~~~~~~~~~vvgNLPYnIss~Il~~ll~~~~~~~~~~~~vlmvQkEvA~Rl~ 163 (284) ... . ..+-.|+-+.++..-..++..+.... .|- ..-++.....|-++++. T Consensus 103 ~~~-~---~~~D~i~i~~~~~~~~~~l~~~~~~L-~pG-G~lvi~~~~~e~~~~~~ 152 (204) T 3e05_A 103 LDD-L---PDPDRVFIGGSGGMLEEIIDAVDRRL-KSE-GVIVLNAVTLDTLTKAV 152 (204) T ss_dssp CTT-S---CCCSEEEESCCTTCHHHHHHHHHHHC-CTT-CEEEEEECBHHHHHHHH T ss_pred CCC-C---CCCCEEEECCCCCCHHHHHHHHHHHC-CCC-CEEEEEEECHHHHHHHH T ss_conf 543-5---78769999065523589999999854-899-89999963487899999 No 35 >2yxe_A Protein-L-isoaspartate O-methyltransferase; rossman-type fold, alpha/beta/alpha sandwich structure, structural genomics; 2.00A {Methanocaldococcus jannaschii DSM2661} Probab=98.77 E-value=1.9e-08 Score=71.47 Aligned_cols=82 Identities=18% Similarity=0.226 Sum_probs=68.6 Q ss_pred CCCCCCCCHHHHHHHHHHCCCCCCCEEEEECCCCCHHHHHHHHCCC--CEEEEECCCCCCHHHHHHHHHHHH-CCCCCCH Q ss_conf 5841123989999999971989998799975898823467750235--259984255430368878753220-0122000 Q gi|254780398|r 25 MGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGA--RKVIVIEKDQQFFPILKDISSQHP-NRLEIIQ 101 (284) Q Consensus 25 lGQnFL~d~~i~~~iv~~~~~~~~~~VlEIGpG~G~LT~~Ll~~~~--~~v~aiEiD~~~~~~l~~~~~~~~-~~~~ii~ 101 (284) .|| ++..+.+..++.+.+++.+++.|||||+|+|.+|..+++... ..|+++|+|+.+++..++.+.... .++.+++ T Consensus 56 ~~~-~i~~P~~~a~~l~~l~l~~g~~VLeIGtGsGY~ta~la~l~g~~g~V~~iE~~~~l~~~a~~~l~~~~~~nv~~~~ 134 (215) T 2yxe_A 56 YGQ-TISAIHMVGMMCELLDLKPGMKVLEIGTGCGYHAAVTAEIVGEDGLVVSIERIPELAEKAERTLRKLGYDNVIVIV 134 (215) T ss_dssp TTE-EECCHHHHHHHHHHTTCCTTCEEEEECCTTSHHHHHHHHHHCTTSEEEEEESCHHHHHHHHHHHHHHTCTTEEEEE T ss_pred CCC-CCCCHHHHHHHHHHHCCCCCCEEEEECCCCCHHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHCCCCCEEEEE T ss_conf 886-1287799999998635899988998278841999999998488871899952889999999999861566449998 Q ss_pred HHHCCC Q ss_conf 000014 Q gi|254780398|r 102 DDALKV 107 (284) Q Consensus 102 ~Dal~~ 107 (284) ||...- T Consensus 135 gd~~~g 140 (215) T 2yxe_A 135 GDGTLG 140 (215) T ss_dssp SCGGGC T ss_pred CCCCCC T ss_conf 886557 No 36 >3fpf_A Mtnas, putative uncharacterized protein; thermonicotianamine, nicotianamine, biosynthetic protein, transferase; HET: TNA MTA; 1.66A {Methanothermobacterthermautotrophicus} PDB: 3fpe_A* 3fph_A* 3fpg_A* 3fpj_A* Probab=98.77 E-value=1.6e-08 Score=71.87 Aligned_cols=101 Identities=24% Similarity=0.271 Sum_probs=73.2 Q ss_pred HHHHHHHHHHCCCCCCCEEEEECCCCCHHHHHHHHCCCC-EEEEECCCCCCHHHHHHHHHHHH-CCCCCCHHHHCCCCHH Q ss_conf 899999999719899987999758988234677502352-59984255430368878753220-0122000000014315 Q gi|254780398|r 33 LNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGAR-KVIVIEKDQQFFPILKDISSQHP-NRLEIIQDDALKVDFE 110 (284) Q Consensus 33 ~~i~~~iv~~~~~~~~~~VlEIGpG~G~LT~~Ll~~~~~-~v~aiEiD~~~~~~l~~~~~~~~-~~~~ii~~Dal~~d~~ 110 (284) ..+++...+.+.+.+++.||+||||+|.+|..++++.+. +|++||+|+.+++.+++...... .+++++++|+..++.. T Consensus 108 ~~l~~~e~~~~~l~~g~rVLdiGcG~g~~t~~~~a~~~g~~V~gIDisp~~~~~Ar~~~~~~g~~~v~~~~gD~~~l~~~ 187 (298) T 3fpf_A 108 LELLKNEAALGRFRRGERAVFIGGGPLPLTGILLSHVYGMRVNVVEIEPDIAELSRKVIEGLGVDGVNVITGDETVIDGL 187 (298) T ss_dssp HHHHHHHHHHTTCCTTCEEEEECCCSSCHHHHHHHHTTCCEEEEEESSHHHHHHHHHHHHHHTCCSEEEEESCGGGGGGC T ss_pred HHHHHHHHHHCCCCCCCEEEEEECCCHHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHCCCCEEEEEECCCCCCCCC T ss_conf 99999999854899999899960685699999998568998999969999999999979864995089997355447899 Q ss_pred HHCCCCCCEEEEECCCHHHHHHHHHHHHH Q ss_conf 52133222011202322467889999985 Q gi|254780398|r 111 KFFNISSPIRIIANLPYNIGTRLLFNWIS 139 (284) Q Consensus 111 ~~~~~~~~~~vvgNLPYnIss~Il~~ll~ 139 (284) ++. ..+++.+...- .+++..+.. T Consensus 188 ~fD-----vV~va~~v~~~-~~vl~~l~r 210 (298) T 3fpf_A 188 EFD-----VLMVAALAEPK-RRVFRNIHR 210 (298) T ss_dssp CCS-----EEEECTTCSCH-HHHHHHHHH T ss_pred CCC-----EEEECCCCCCH-HHHHHHHHH T ss_conf 989-----89989877379-999999998 No 37 >3b3f_A Histone-arginine methyltransferase CARM1; protein arginine methyltransferase, catalytic domain, alternative splicing, chromatin regulator; HET: SAH; 2.20A {Rattus norvegicus} PDB: 3b3g_A 2v74_B* 2v7e_A Probab=98.76 E-value=1.2e-08 Score=72.81 Aligned_cols=94 Identities=19% Similarity=0.329 Sum_probs=69.1 Q ss_pred HHHHCCCCCCCCCCCCC--CCCHHHHHH----HHHHCCCCCCCEEEEECCCCCHHHHHHHHCCCCEEEEECCCCCCHHHH Q ss_conf 99981898433658411--239899999----999719899987999758988234677502352599842554303688 Q gi|254780398|r 13 ILSHYKIIPKKYMGQNF--LLDLNILKK----IAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPIL 86 (284) Q Consensus 13 ll~~~~~~p~k~lGQnF--L~d~~i~~~----iv~~~~~~~~~~VlEIGpG~G~LT~~Ll~~~~~~v~aiEiD~~~~~~l 86 (284) ..+.|+ .+++|+ |.|..-.+. |.+.....+++.|||||+|+|.|+..+++.+|++|+++|.++ ++..+ T Consensus 11 y~~~y~-----~~~~h~~ml~D~~r~~~y~~ai~~~~~~~~~~~VLDiGcG~G~ls~~aa~~Ga~~V~~~e~s~-~~~~~ 84 (341) T 3b3f_A 11 YFQFYG-----YLSQQQNMMQDYVRTGTYQRAILQNHTDFKDKIVLDVGCGSGILSFFAAQAGARKIYAVEAST-MAQHA 84 (341) T ss_dssp HHHHHT-----CHHHHHHHHHCHHHHHHHHHHHHHTGGGTTTCEEEEESCTTSHHHHHHHHTTCSEEEEEECST-HHHHH T ss_pred HHHHHC-----CHHHHHHHHCCHHHHHHHHHHHHHCHHHCCCCEEEEECCCCCHHHHHHHHCCCCEEEEEECCH-HHHHH T ss_conf 987650-----408899885873658999999985642259798999666853999999976999899997909-99999 Q ss_pred HHHHHH--HHCCCCCCHHHHCCCCHHHH Q ss_conf 787532--20012200000001431552 Q gi|254780398|r 87 KDISSQ--HPNRLEIIQDDALKVDFEKF 112 (284) Q Consensus 87 ~~~~~~--~~~~~~ii~~Dal~~d~~~~ 112 (284) ++.... ..++++++++|+.++++++- T Consensus 85 ~~~~~~n~~~~~I~~i~~~~~~l~l~~~ 112 (341) T 3b3f_A 85 EVLVKSNNLTDRIVVIPGKVEEVSLPEQ 112 (341) T ss_dssp HHHHHHTTCTTTEEEEESCTTTCCCSSC T ss_pred HHHHHHCCCCCCCEEEEEEHHHCCCCCC T ss_conf 9999985998640079603665256766 No 38 >2pwy_A TRNA (adenine-N(1)-)-methyltransferase; mtase, adoMet, TRMI, tRNA-M1A58; HET: SAH; 1.70A {Thermus thermophilus HB27} Probab=98.75 E-value=2.4e-08 Score=70.84 Aligned_cols=93 Identities=14% Similarity=0.069 Sum_probs=71.5 Q ss_pred CCHHHHHHHHHHCCCCCCCEEEEECCCCCHHHHHHHHCC-C-CEEEEECCCCCCHHHHHHHHHHH--HCCCCCCHHHHCC Q ss_conf 398999999997198999879997589882346775023-5-25998425543036887875322--0012200000001 Q gi|254780398|r 31 LDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLG-A-RKVIVIEKDQQFFPILKDISSQH--PNRLEIIQDDALK 106 (284) Q Consensus 31 ~d~~i~~~iv~~~~~~~~~~VlEIGpG~G~LT~~Ll~~~-~-~~v~aiEiD~~~~~~l~~~~~~~--~~~~~ii~~Dal~ 106 (284) +=+.-+..|+..+++.+++.|||+|+|.|++|..|++.. + .+|+++|+++.+++.+++++..+ .++++++.+|+.+ T Consensus 80 iyp~d~~~Ii~~l~i~pG~~VLEiG~GsG~lt~~lA~~v~~~g~V~~~d~~~~~~~~A~~n~~~~~~~~~v~~~~~d~~~ 159 (258) T 2pwy_A 80 TYPKDASAMVTLLDLAPGMRVLEAGTGSGGLTLFLARAVGEKGLVESYEARPHHLAQAERNVRAFWQVENVRFHLGKLEE 159 (258) T ss_dssp CCHHHHHHHHHHTTCCTTCEEEEECCTTSHHHHHHHHHHCTTSEEEEEESCHHHHHHHHHHHHHHCCCCCEEEEESCGGG T ss_pred CCHHHHHHHHHHCCCCCCCEEEECCCCHHHHHHHHHHHCCCCCEEEEEECCHHHHHHHHHHHHHCCCCCCEEEEECCHHH T ss_conf 47799999999719899999998777067999999997288738999848999999999999980899855688365788 Q ss_pred CCHHHHCCCCCCEEEEECCCH Q ss_conf 431552133222011202322 Q gi|254780398|r 107 VDFEKFFNISSPIRIIANLPY 127 (284) Q Consensus 107 ~d~~~~~~~~~~~~vvgNLPY 127 (284) .++++.. --.|+-.+|- T Consensus 160 ~~~~~~~----~d~v~ld~p~ 176 (258) T 2pwy_A 160 AELEEAA----YDGVALDLME 176 (258) T ss_dssp CCCCTTC----EEEEEEESSC T ss_pred CCCCCCC----CCEEEECCCC T ss_conf 5555643----2389964889 No 39 >1vl5_A Unknown conserved protein BH2331; 10174951, hypothetical protein, structural genomics, JCSG, protein structure initiative, PSI; HET: MSE; 1.95A {Bacillus halodurans c-125} SCOP: c.66.1.41 Probab=98.75 E-value=1.5e-08 Score=72.11 Aligned_cols=91 Identities=14% Similarity=0.234 Sum_probs=69.7 Q ss_pred HHHHHHHCCCCCCCEEEEECCCCCHHHHHHHHCCCCEEEEECCCCCCHHHHHHHHHHHH-CCCCCCHHHHCCCCHHHHCC Q ss_conf 99999971989998799975898823467750235259984255430368878753220-01220000000143155213 Q gi|254780398|r 36 LKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQHP-NRLEIIQDDALKVDFEKFFN 114 (284) Q Consensus 36 ~~~iv~~~~~~~~~~VlEIGpG~G~LT~~Ll~~~~~~v~aiEiD~~~~~~l~~~~~~~~-~~~~ii~~Dal~~d~~~~~~ 114 (284) .+++++.+++.+++.|||||||+|.+|..+++.++ +|+++|+.+.++..+++...... .+++++.+|+.+.++++- T Consensus 26 ~~~l~~~~~l~~~~~VLDiGcG~G~~~~~la~~~~-~v~g~D~s~~~~~~a~~~~~~~g~~~i~~~~~d~~~l~~~~~-- 102 (260) T 1vl5_A 26 LAKLMQIAALKGNEEVLDVATGGGHVANAFAPFVK-KVVAFDLTEDILKVARAFIEGNGHQQVEYVQGDAEQMPFTDE-- 102 (260) T ss_dssp HHHHHHHHTCCSCCEEEEETCTTCHHHHHHGGGSS-EEEEEESCHHHHHHHHHHHHHTTCCSEEEEECCC-CCCSCTT-- T ss_pred HHHHHHHCCCCCCCEEEEECCCCCHHHHHHHHHCC-EEEEEECCHHHHHHHHHCCCCCCCCCCEEEECCCCCCCCCCC-- T ss_conf 99999960899929999954647199999997299-699998999999986612222456652477511235787778-- Q ss_pred CCCCEEEEECCCHHHH Q ss_conf 3222011202322467 Q gi|254780398|r 115 ISSPIRIIANLPYNIG 130 (284) Q Consensus 115 ~~~~~~vvgNLPYnIs 130 (284) .-...+..+.-.++. T Consensus 103 -sfD~V~~~~~l~h~~ 117 (260) T 1vl5_A 103 -RFHIVTCRIAAHHFP 117 (260) T ss_dssp -CEEEEEEESCGGGCS T ss_pred -CEEEEEEECCHHHCC T ss_conf -557998702255268 No 40 >3gnl_A Uncharacterized protein, DUF633, LMOF2365_1472; structural genomics, PSI-2, protein structure initiative; 1.50A {Listeria monocytogenes str} Probab=98.75 E-value=1.6e-07 Score=65.74 Aligned_cols=97 Identities=14% Similarity=0.087 Sum_probs=72.1 Q ss_pred HHHHHHCCCCCCCEEEEECCCCCHHHHHHHHCCC-CEEEEECCCCCCHHHHHHHHHHH--HCCCCCCHHHHCCCCHHHHC Q ss_conf 9999971989998799975898823467750235-25998425543036887875322--00122000000014315521 Q gi|254780398|r 37 KKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGA-RKVIVIEKDQQFFPILKDISSQH--PNRLEIIQDDALKVDFEKFF 113 (284) Q Consensus 37 ~~iv~~~~~~~~~~VlEIGpG~G~LT~~Ll~~~~-~~v~aiEiD~~~~~~l~~~~~~~--~~~~~ii~~Dal~~d~~~~~ 113 (284) ..|++.+ .+++.|++||||.|.|+..|++.+. .+|+|+|+++..++.+++....+ .++++++.+|++....... T Consensus 13 ~~ia~~v--~~g~~vlDiGcg~G~l~~~l~~~~~~~~V~avDi~~~~l~~A~~n~~~~gl~~~I~~~~~D~~~~~~~~~- 89 (244) T 3gnl_A 13 EKVASYI--TKNERIADIGSDHAYLPCFAVKNQTASFAIAGEVVDGPFQSAQKQVRSSGLTEQIDVRKGNGLAVIEKKD- 89 (244) T ss_dssp HHHHTTC--CSSEEEEEETCSTTHHHHHHHHTTSEEEEEEEESSHHHHHHHHHHHHHTTCTTTEEEEECSGGGGCCGGG- T ss_pred HHHHHHC--CCCCEEEEECCCHHHHHHHHHHCCCCCEEEEEECCHHHHHHHHHHHHHCCCCCCEEEEECCCHHHHCCCC- T ss_conf 9999658--9999899971864899999998099988999638899999999999982999867999887504321557- Q ss_pred CCCCCEEEEECCCHHHHHHHHHHHH Q ss_conf 3322201120232246788999998 Q gi|254780398|r 114 NISSPIRIIANLPYNIGTRLLFNWI 138 (284) Q Consensus 114 ~~~~~~~vvgNLPYnIss~Il~~ll 138 (284) .....+++..++..-..|+.... T Consensus 90 --~~d~~viag~g~~~i~~il~~~~ 112 (244) T 3gnl_A 90 --AIDTIVIAGMGGTLIRTILEEGA 112 (244) T ss_dssp --CCCEEEEEEECHHHHHHHHHHTG T ss_pred --CCCEEEECCCCHHHHHHHHHHHH T ss_conf --87689984888899999999989 No 41 >3mb5_A SAM-dependent methyltransferase; RNA methyltransferase, M1A, TRMI, intermolecular contacts, R specificity, tetramer, disulfide bond; HET: SAM; 1.60A {Pyrococcus abyssi} PDB: 3lga_A* 3lhd_C* Probab=98.73 E-value=3.7e-08 Score=69.70 Aligned_cols=94 Identities=21% Similarity=0.251 Sum_probs=73.2 Q ss_pred CCCHHHHHHHHHHCCCCCCCEEEEECCCCCHHHHHHHHCC-CC-EEEEECCCCCCHHHHHHHHHH--HHCCCCCCHHHHC Q ss_conf 2398999999997198999879997589882346775023-52-599842554303688787532--2001220000000 Q gi|254780398|r 30 LLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLG-AR-KVIVIEKDQQFFPILKDISSQ--HPNRLEIIQDDAL 105 (284) Q Consensus 30 L~d~~i~~~iv~~~~~~~~~~VlEIGpG~G~LT~~Ll~~~-~~-~v~aiEiD~~~~~~l~~~~~~--~~~~~~ii~~Dal 105 (284) .+-+.-+..|+..+++.+++.|||+|+|.|.+|..|++.. +. +|+++|+++.+++.+++.+.. ..+++++..+|+. T Consensus 76 iiyp~d~~~Ii~~l~i~pG~rVLd~G~GsG~lt~~lar~~~~~G~V~~~D~~~~~~~~A~~n~~~~gl~~~v~~~~~D~~ 155 (255) T 3mb5_A 76 IVHPKDAALIVAYAGISPGDFIVEAGVGSGALTLFLANIVGPEGRVVSYEIREDFAKLAWENIKWAGFDDRVTIKLKDIY 155 (255) T ss_dssp CCCHHHHHHHHHHTTCCTTCEEEEECCTTSHHHHHHHHHHCTTSEEEEECSCHHHHHHHHHHHHHHTCTTTEEEECSCGG T ss_pred CCCHHHHHHHHHHHCCCCCCEEEECCCCCHHHHHHHHHHCCCCCEEEEECCCHHHHHHHHHHHHHCCCCEEEEEEECCHH T ss_conf 65889999999971989899899888662799999997438897799834999999999999997199814999946110 Q ss_pred CCCHHHHCCCCCCEEEEECCCHH Q ss_conf 14315521332220112023224 Q gi|254780398|r 106 KVDFEKFFNISSPIRIIANLPYN 128 (284) Q Consensus 106 ~~d~~~~~~~~~~~~vvgNLPYn 128 (284) ....+. .-..|+-++|-- T Consensus 156 ~~~~~~-----~~D~V~ld~p~p 173 (255) T 3mb5_A 156 EGIEEE-----NVDHVILDLPQP 173 (255) T ss_dssp GCCCCC-----SEEEEEECSSCG T ss_pred CCCCCC-----CCCEEEEECCCH T ss_conf 355556-----565799966856 No 42 >1o54_A SAM-dependent O-methyltransferase; TM0748, structural genomics, JCSG, PSI, protein structure initiative; 1.65A {Thermotoga maritima} SCOP: c.66.1.13 Probab=98.73 E-value=4.5e-08 Score=69.18 Aligned_cols=93 Identities=19% Similarity=0.188 Sum_probs=71.2 Q ss_pred CCCHHHHHHHHHHCCCCCCCEEEEECCCCCHHHHHHHHCC-C-CEEEEECCCCCCHHHHHHHHHHH--HCCCCCCHHHHC Q ss_conf 2398999999997198999879997589882346775023-5-25998425543036887875322--001220000000 Q gi|254780398|r 30 LLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLG-A-RKVIVIEKDQQFFPILKDISSQH--PNRLEIIQDDAL 105 (284) Q Consensus 30 L~d~~i~~~iv~~~~~~~~~~VlEIGpG~G~LT~~Ll~~~-~-~~v~aiEiD~~~~~~l~~~~~~~--~~~~~ii~~Dal 105 (284) .+-+.-+..|+..+++.+++.|||+|+|.|.+|..|++.. + .+|+++|+++.+++.+++++..+ .+++++.++|+. T Consensus 95 iiypkD~~~Ii~~ldi~pG~~VLDiG~GsG~lt~~lA~~v~~~g~V~~~D~~~~~~~~A~~n~~~~gl~~~v~~~~~D~~ 174 (277) T 1o54_A 95 IVYPKDSSFIAMMLDVKEGDRIIDTGVGSGAMCAVLARAVGSSGKVFAYEKREEFAKLAESNLTKWGLIERVTIKVRDIS 174 (277) T ss_dssp CCCHHHHHHHHHHTTCCTTCEEEEECCTTSHHHHHHHHHTTTTCEEEEECCCHHHHHHHHHHHHHTTCGGGEEEECCCGG T ss_pred CCCHHHHHHHHHHHCCCCCCEEEECCCCCHHHHHHHHHHCCCCEEEEEEECCHHHHHHHHHHHHHCCCCCCEEEEECCCC T ss_conf 26889999999980899999899768882799999998518980999996889999999998997499876799968622 Q ss_pred CCCHHHHCCCCCCEEEEECCCH Q ss_conf 1431552133222011202322 Q gi|254780398|r 106 KVDFEKFFNISSPIRIIANLPY 127 (284) Q Consensus 106 ~~d~~~~~~~~~~~~vvgNLPY 127 (284) +.... ..--.|+-++|- T Consensus 175 ~~~~~-----~~~D~V~ld~p~ 191 (277) T 1o54_A 175 EGFDE-----KDVDALFLDVPD 191 (277) T ss_dssp GCCSC-----CSEEEEEECCSC T ss_pred CCCCC-----CCCCEEECCCCC T ss_conf 44444-----454102217899 No 43 >3gdh_A Trimethylguanosine synthase homolog; M7G, CAP, dimethyltransferase, usnRNA, snoRNA, telomerase, cytoplasm, methyltransferase, nucleus; HET: MGP SAH; 2.00A {Homo sapiens} PDB: 3egi_A* Probab=98.72 E-value=1e-08 Score=73.10 Aligned_cols=93 Identities=19% Similarity=0.185 Sum_probs=71.1 Q ss_pred CCHHHHHHHHHHC-CCCCCCEEEEECCCCCHHHHHHHHCCCCEEEEECCCCCCHHHHHHHHHHH--HCCCCCCHHHHCCC Q ss_conf 3989999999971-98999879997589882346775023525998425543036887875322--00122000000014 Q gi|254780398|r 31 LDLNILKKIAESS-GSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQH--PNRLEIIQDDALKV 107 (284) Q Consensus 31 ~d~~i~~~iv~~~-~~~~~~~VlEIGpG~G~LT~~Ll~~~~~~v~aiEiD~~~~~~l~~~~~~~--~~~~~ii~~Dal~~ 107 (284) +.+.++..+++.+ ...+++.||++|||.|..|..+++.++ +|++||+++..++.+++..... .++++++++|++++ T Consensus 61 tpe~ia~~ia~~~~~~~~~~~vlD~gcG~G~~~~~la~~~~-~v~~iD~s~~~i~~a~~n~~~~~~~~~i~~~~~D~~~~ 139 (241) T 3gdh_A 61 TPEKIAEHIAGRVSQSFKCDVVVDAFCGVGGNTIQFALTGM-RVIAIDIDPVKIALARNNAEVYGIADKIEFICGDFLLL 139 (241) T ss_dssp CCHHHHHHHHHHHHHHSCCSEEEETTCTTSHHHHHHHHTTC-EEEEEESCHHHHHHHHHHHHHTTCGGGEEEEESCHHHH T ss_pred CHHHHHHHHHHHHHHCCCCCEEEECCCCCCHHHHHHHHCCC-EEEEEECCHHHHHHHHHHHHHCCCCCCEEEEECCHHHH T ss_conf 86999999999865028999899937873688999996799-89999897788899999999849987439997648664 Q ss_pred CHHHHCCCCCCEEEEECCCHHH Q ss_conf 3155213322201120232246 Q gi|254780398|r 108 DFEKFFNISSPIRIIANLPYNI 129 (284) Q Consensus 108 d~~~~~~~~~~~~vvgNLPYnI 129 (284) ... ...-.|+.+.||.- T Consensus 140 ~~~-----~~~D~i~~~pp~~~ 156 (241) T 3gdh_A 140 ASF-----LKADVVFLSPPWGG 156 (241) T ss_dssp GGG-----CCCSEEEECCCCSS T ss_pred HHC-----CCCEEEEECCCCCC T ss_conf 143-----78449998378788 No 44 >2p8j_A S-adenosylmethionine-dependent methyltransferase; NP_349143.1, methyltransferase domain, structural genomics; HET: PGE GOL; 2.00A {Clostridium acetobutylicum} Probab=98.72 E-value=1.9e-08 Score=71.54 Aligned_cols=85 Identities=18% Similarity=0.185 Sum_probs=63.3 Q ss_pred CCCCCCHHHHHHHHHHCCCCCCCEEEEECCCCCHHHHHHHHCCCCEEEEECCCCCCHHHHHHHHHHHHCCCCCCHHHHCC Q ss_conf 41123989999999971989998799975898823467750235259984255430368878753220012200000001 Q gi|254780398|r 27 QNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALK 106 (284) Q Consensus 27 QnFL~d~~i~~~iv~~~~~~~~~~VlEIGpG~G~LT~~Ll~~~~~~v~aiEiD~~~~~~l~~~~~~~~~~~~ii~~Dal~ 106 (284) |-++..+.+.+-+-..-....+..|||+|||.|..|..++.+...+|+++|+++.+++.+++......-+++++++|+.+ T Consensus 3 ~~~~~~~~l~r~l~~~~~~~~~~~VLDiGcG~G~~~~~~~~~~~~~v~gvD~S~~~i~~a~~~~~~~~~~v~~~~~d~~~ 82 (209) T 2p8j_A 3 KTIIRQPQLYRFLKYCNESNLDKTVLDCGAGGDLPPLSIFVEDGYKTYGIEISDLQLKKAENFSRENNFKLNISKGDIRK 82 (209) T ss_dssp CCCCSCTHHHHHHHHHHHSSSCSEEEEESCCSSSCTHHHHHHTTCEEEEEECCHHHHHHHHHHHHHHTCCCCEEECCTTS T ss_pred HHHHHHHHHHHHHHHHCCCCCCCEEEEEECCCCHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHCCCCEEEEECCEEEC T ss_conf 45564289999999730106989899972788999999998589989999597999999986220357436530020223 Q ss_pred CCHHH Q ss_conf 43155 Q gi|254780398|r 107 VDFEK 111 (284) Q Consensus 107 ~d~~~ 111 (284) +++++ T Consensus 83 l~~~~ 87 (209) T 2p8j_A 83 LPFKD 87 (209) T ss_dssp CCSCT T ss_pred CCCCC T ss_conf 68543 No 45 >3ccf_A Cyclopropane-fatty-acyl-phospholipid synthase; YP_321342.1, putative methyltransferase, structural genomics; 1.90A {Anabaena variabilis atcc 29413} Probab=98.71 E-value=1.6e-08 Score=72.00 Aligned_cols=70 Identities=19% Similarity=0.312 Sum_probs=58.4 Q ss_pred HHHHHHCCCCCCCEEEEECCCCCHHHHHHHHCCCCEEEEECCCCCCHHHHHHHHHHHHCCCCCCHHHHCCCCHHH Q ss_conf 999997198999879997589882346775023525998425543036887875322001220000000143155 Q gi|254780398|r 37 KKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEK 111 (284) Q Consensus 37 ~~iv~~~~~~~~~~VlEIGpG~G~LT~~Ll~~~~~~v~aiEiD~~~~~~l~~~~~~~~~~~~ii~~Dal~~d~~~ 111 (284) +++++.+++.+++.|||||||+|.+|..|+++++ +|++||+++.+++.+++.+. ++++..+|+..+++++ T Consensus 47 ~~ll~~l~~~~g~~VLDiGcG~G~~~~~la~~~~-~v~giD~s~~ml~~a~~~~~----~~~~~~~~~~~~~~~~ 116 (279) T 3ccf_A 47 EDLLQLLNPQPGEFILDLGCGTGQLTEKIAQSGA-EVLGTDNAATMIEKARQNYP----HLHFDVADARNFRVDK 116 (279) T ss_dssp CHHHHHHCCCTTCEEEEETCTTSHHHHHHHHTTC-EEEEEESCHHHHHHHHHHCT----TSCEEECCTTTCCCSS T ss_pred HHHHHCCCCCCCCEEEEECCCCCHHHHHHHHCCC-EEEEEECHHHHHHHHHHHCC----CCCEEEHHHCCCCCCC T ss_conf 9999706999969999935858599999996499-89999163889999986165----4311100000135676 No 46 >2frn_A Hypothetical protein PH0793; structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; 2.10A {Pyrococcus horikoshii OT3} SCOP: c.66.1.47 PDB: 3k6r_A 3a25_A* 3a26_A* Probab=98.71 E-value=1e-08 Score=73.18 Aligned_cols=85 Identities=25% Similarity=0.261 Sum_probs=67.5 Q ss_pred HHHHHHCCCCCCCEEEEECCCCCHHHHHHHHCCCCEEEEECCCCCCHHHHHHHHHH--HHCCCCCCHHHHCCCCHHHHCC Q ss_conf 99999719899987999758988234677502352599842554303688787532--2001220000000143155213 Q gi|254780398|r 37 KKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQ--HPNRLEIIQDDALKVDFEKFFN 114 (284) Q Consensus 37 ~~iv~~~~~~~~~~VlEIGpG~G~LT~~Ll~~~~~~v~aiEiD~~~~~~l~~~~~~--~~~~~~ii~~Dal~~d~~~~~~ 114 (284) .++++. ..+++.||++|+|.|.+|..+++.++.+|+|+|+++..++.++++... ..++++++++|+.++.... T Consensus 117 ~rl~~~--~~~g~~VlDl~aG~G~~~l~~a~~~~~~V~avD~n~~a~~~~~~N~~~n~~~~~v~~~~~D~~~~~~~~--- 191 (278) T 2frn_A 117 VRMAKV--AKPDELVVDMFAGIGHLSLPIAVYGKAKVIAIEKDPYTFKFLVENIHLNKVEDRMSAYNMDNRDFPGEN--- 191 (278) T ss_dssp HHHHHH--CCTTCEEEETTCTTTTTHHHHHHHTCCEEEEECCCHHHHHHHHHHHHHTTCTTTEEEECSCTTTCCCCS--- T ss_pred HHHHHH--CCCCCEEEECCCCCCHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHHHCCCCCEEEEECCHHHHCCCC--- T ss_conf 999965--369988999177051999999997498699997999999999999998099984899968199944666--- Q ss_pred CCCCEEEEECCCHH Q ss_conf 32220112023224 Q gi|254780398|r 115 ISSPIRIIANLPYN 128 (284) Q Consensus 115 ~~~~~~vvgNLPYn 128 (284) .--+|+.|+|+. T Consensus 192 --~~D~Vim~~p~~ 203 (278) T 2frn_A 192 --IADRILMGYVVR 203 (278) T ss_dssp --CEEEEEECCCSS T ss_pred --CCCEEEECCCCC T ss_conf --886999899852 No 47 >3ege_A Putative methyltransferase from antibiotic biosynthesis pathway; YP_324569.1, structural genomics; 2.40A {Anabaena variabilis atcc 29413} Probab=98.71 E-value=1.1e-08 Score=72.94 Aligned_cols=87 Identities=23% Similarity=0.276 Sum_probs=68.1 Q ss_pred CCHHHHHHHHHHCCCCCCCEEEEECCCCCHHHHHHHHCCCCEEEEECCCCCCHHHHHHHHHHHHCCCCCCHHHHCCCCHH Q ss_conf 39899999999719899987999758988234677502352599842554303688787532200122000000014315 Q gi|254780398|r 31 LDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFE 110 (284) Q Consensus 31 ~d~~i~~~iv~~~~~~~~~~VlEIGpG~G~LT~~Ll~~~~~~v~aiEiD~~~~~~l~~~~~~~~~~~~ii~~Dal~~d~~ 110 (284) .++.+++++++.+++.+++.|||||||+|.+|..|+++++ +|++||+++.+++.++ ..+ +++++.+|+.+++++ T Consensus 18 ~~~~~~~~~~~~l~l~~~~~vLDvGcG~G~~~~~l~~~~~-~v~gvD~s~~~~~~a~----~~~-~~~~~~~d~~~l~~~ 91 (261) T 3ege_A 18 PDIRIVNAIINLLNLPKGSVIADIGAGTGGYSVALANQGL-FVYAVEPSIVMRQQAV----VHP-QVEWFTGYAENLALP 91 (261) T ss_dssp CCHHHHHHHHHHHCCCTTCEEEEETCTTSHHHHHHHTTTC-EEEEECSCHHHHHSSC----CCT-TEEEECCCTTSCCSC T ss_pred CCHHHHHHHHHHCCCCCCCEEEEECCCCCHHHHHHHHCCC-EEEEEECCCCCCCCCC----CCC-CHHHHHHHHHHCCCC T ss_conf 8889999999965999969999964888899999997699-8999974453121000----122-101333445430256 Q ss_pred HHCCCCCCEEEEECCCH Q ss_conf 52133222011202322 Q gi|254780398|r 111 KFFNISSPIRIIANLPY 127 (284) Q Consensus 111 ~~~~~~~~~~vvgNLPY 127 (284) +- .-. .|+++-.. T Consensus 92 ~~---~fD-~v~~~~~l 104 (261) T 3ege_A 92 DK---SVD-GVISILAI 104 (261) T ss_dssp TT---CBS-EEEEESCG T ss_pred CC---CCC-EEEECCHH T ss_conf 76---013-77540127 No 48 >2fhp_A Methylase, putative; alpha-beta-alpha sandwich, structural genomics, PSI, protein structure initiative; HET: MSE; 1.60A {Enterococcus faecalis V583} SCOP: c.66.1.46 Probab=98.71 E-value=6.3e-08 Score=68.25 Aligned_cols=109 Identities=21% Similarity=0.338 Sum_probs=80.6 Q ss_pred CHHHHHHHHHHCC-CCCCCEEEEECCCCCHHHHHHHHCCCCEEEEECCCCCCHHHHHHHHHHH--HCCCCCCHHHHCCCC Q ss_conf 9899999999719-8999879997589882346775023525998425543036887875322--001220000000143 Q gi|254780398|r 32 DLNILKKIAESSG-SLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQH--PNRLEIIQDDALKVD 108 (284) Q Consensus 32 d~~i~~~iv~~~~-~~~~~~VlEIGpG~G~LT~~Ll~~~~~~v~aiEiD~~~~~~l~~~~~~~--~~~~~ii~~Dal~~d 108 (284) ...+-+.+...++ ..++..||++++|+|+++.+.+.+||++|++||.|+..+..+++..... .++++++++|+.++ T Consensus 28 ~~~vrealfn~l~~~~~~~~vLDlf~GsG~~~~ea~srGa~~v~~Ve~~~~~~~~~~~N~~~~~~~~~~~i~~~d~~~~- 106 (187) T 2fhp_A 28 TDKVKESIFNMIGPYFDGGMALDLYSGSGGLAIEAVSRGMDKSICIEKNFAALKVIKENIAITKEPEKFEVRKMDANRA- 106 (187) T ss_dssp CHHHHHHHHHHHCSCCSSCEEEETTCTTCHHHHHHHHTTCSEEEEEESCHHHHHHHHHHHHHHTCGGGEEEEESCHHHH- T ss_pred CHHHHHHHHHHHHHHCCCCEEEECCCCCCHHHHHHHHCCCCEEEEEEECHHHHHHHHHHHHHCCCCCCCEEEEEEHHHH- T ss_conf 1899999999865115999899988873789999997588835899942467767665554202456417886107888- Q ss_pred HHHHCCCCCCE-EEEECCCHHH--HHHHHHHHHHHH Q ss_conf 15521332220-1120232246--788999998520 Q gi|254780398|r 109 FEKFFNISSPI-RIIANLPYNI--GTRLLFNWISAD 141 (284) Q Consensus 109 ~~~~~~~~~~~-~vvgNLPYnI--ss~Il~~ll~~~ 141 (284) +..+...+.++ .|+-+.||+- -..++..+.+.. T Consensus 107 l~~~~~~~~~fDlIflDPPY~~~~~~~~l~~i~~~~ 142 (187) T 2fhp_A 107 LEQFYEEKLQFDLVLLDPPYAKQEIVSQLEKMLERQ 142 (187) T ss_dssp HHHHHHTTCCEEEEEECCCGGGCCHHHHHHHHHHTT T ss_pred HHHHHHCCCCCCEEEECCCCCCHHHHHHHHHHHHCC T ss_conf 776430267653599789875317999999999879 No 49 >2pbf_A Protein-L-isoaspartate O-methyltransferase beta- aspartate methyltransferase; protein repair, isoaspartyl formation, P. falciparum; HET: SAH; 2.00A {Plasmodium falciparum 3D7} Probab=98.71 E-value=5.3e-08 Score=68.71 Aligned_cols=85 Identities=18% Similarity=0.207 Sum_probs=66.3 Q ss_pred CCCCCCCCHHHHHHHHHHC--CCCCCCEEEEECCCCCHHHHHHHHC------CCCEEEEECCCCCCHHHHHHHHHHH--- Q ss_conf 5841123989999999971--9899987999758988234677502------3525998425543036887875322--- Q gi|254780398|r 25 MGQNFLLDLNILKKIAESS--GSLDGITVIEIGAGPGNLTQMLLTL------GARKVIVIEKDQQFFPILKDISSQH--- 93 (284) Q Consensus 25 lGQnFL~d~~i~~~iv~~~--~~~~~~~VlEIGpG~G~LT~~Ll~~------~~~~v~aiEiD~~~~~~l~~~~~~~--- 93 (284) .|| ++..+.+..++.+.+ .+.+++.|||||+|+|.+|--++.. ...+|++||+|+.+++..++.+... T Consensus 57 ~~~-tis~P~~~A~~l~~L~~~l~~g~~VLeIGtGsGY~ta~la~~~~~l~~~~g~V~~iE~~~~l~~~a~~~l~~~~~~ 135 (227) T 2pbf_A 57 HGV-TISAPHMHALSLKRLINVLKPGSRAIDVGSGSGYLTVCMAIKMNVLENKNSYVIGLERVKDLVNFSLENIKRDKPE 135 (227) T ss_dssp TTE-EECCHHHHHHHHHHHTTTSCTTCEEEEESCTTSHHHHHHHHHTTTTTCTTCEEEEEESCHHHHHHHHHHHHHHCGG T ss_pred CCC-EECHHHHHHHHHHHHHHHCCCCCEEEEECCCCCHHHHHHHHHHHHHCCCCCEEEEEEECHHHHHHHHHHHHHCCHH T ss_conf 997-8557899999999878647998869983799739999999997652245653899970599999999999851044 Q ss_pred ---HCCCCCCHHHHCCCCHH Q ss_conf ---00122000000014315 Q gi|254780398|r 94 ---PNRLEIIQDDALKVDFE 110 (284) Q Consensus 94 ---~~~~~ii~~Dal~~d~~ 110 (284) -+++++++||+...... T Consensus 136 ~~~~~nv~~~~gd~~~~~~~ 155 (227) T 2pbf_A 136 LLKIDNFKIIHKNIYQVNEE 155 (227) T ss_dssp GGSSTTEEEEECCGGGCCHH T ss_pred HHCCCCEEEEECCCCCCCCC T ss_conf 41557589997773201255 No 50 >3dlc_A Putative S-adenosyl-L-methionine-dependent methyltransferase; NP_988299.1, structural genomics, joint center for structural genomics; HET: MSE SAM; 1.15A {Methanococcus maripaludis} Probab=98.70 E-value=1.8e-08 Score=71.71 Aligned_cols=90 Identities=22% Similarity=0.292 Sum_probs=69.1 Q ss_pred HHHHHHHHHHCCCCCCCEEEEECCCCCHHHHHHHHCCCCEEEEECCCCCCHHHHHHHHHH--HHCCCCCCHHHHCCCCHH Q ss_conf 899999999719899987999758988234677502352599842554303688787532--200122000000014315 Q gi|254780398|r 33 LNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQ--HPNRLEIIQDDALKVDFE 110 (284) Q Consensus 33 ~~i~~~iv~~~~~~~~~~VlEIGpG~G~LT~~Ll~~~~~~v~aiEiD~~~~~~l~~~~~~--~~~~~~ii~~Dal~~d~~ 110 (284) +.+++++++.+++.++ .|||||||+|..+..|+++...+|+++|+.+.+++.+++.... ..++++++++|+.++.++ T Consensus 30 ~~~~~~i~~~~~~~~~-~VLDiGcG~G~~~~~la~~~~~~v~giD~s~~~l~~a~~~~~~~~~~~~i~~~~~d~~~~~~~ 108 (219) T 3dlc_A 30 PIIAENIINRFGITAG-TCIDIGSGPGALSIALAKQSDFSIRALDFSKHMNEIALKNIADANLNDRIQIVQGDVHNIPIE 108 (219) T ss_dssp HHHHHHHHHHHCCCEE-EEEEETCTTSHHHHHHHHHSEEEEEEEESCHHHHHHHHHHHHHTTCTTTEEEEECBTTBCSSC T ss_pred HHHHHHHHHHCCCCCC-EEEEECCCCCHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHHCCCCCCEEECCCCCCCCCCC T ss_conf 9999999997299999-399962758599999995369989999797899999987444216666400013653356754 Q ss_pred HHCCCCCCEEEEECCCH Q ss_conf 52133222011202322 Q gi|254780398|r 111 KFFNISSPIRIIANLPY 127 (284) Q Consensus 111 ~~~~~~~~~~vvgNLPY 127 (284) +- .--.|+++--+ T Consensus 109 ~~----~fD~V~~~~~l 121 (219) T 3dlc_A 109 DN----YADLIVSRGSV 121 (219) T ss_dssp TT----CEEEEEEESCG T ss_pred CC----CCCEEEECCHH T ss_conf 45----55299984416 No 51 >2nxc_A L11 mtase, ribosomal protein L11 methyltransferase; transferase S-adenosly-L-methionine dependent methyltransferase posttranslational modification; 1.59A {Thermus thermophilus HB8} SCOP: c.66.1.39 PDB: 1ufk_A 2nxe_A* 2nxj_A 2nxn_A 2zbp_A* 2zbq_A* 2zbr_A* 3cjq_A* 3cjr_A* 3cju_A* 3egv_A* 3cjt_A* Probab=98.70 E-value=6.1e-08 Score=68.34 Aligned_cols=88 Identities=18% Similarity=0.244 Sum_probs=64.7 Q ss_pred CCCCCEEEEECCCCCHHHHHHHHCCCCEEEEECCCCCCHHHHHHHHHHHHCCCCCCHHHHCCCCHHHHCCCCCCEEEEEC Q ss_conf 89998799975898823467750235259984255430368878753220012200000001431552133222011202 Q gi|254780398|r 45 SLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIAN 124 (284) Q Consensus 45 ~~~~~~VlEIGpG~G~LT~~Ll~~~~~~v~aiEiD~~~~~~l~~~~~~~~~~~~ii~~Dal~~d~~~~~~~~~~~~vvgN 124 (284) ..+++.||++|||.|.|+..+++.++ +|+++|+|+.+++.++++...+.-+.+++++|.... ...+.--.|++| T Consensus 118 ~~~g~~VLDvGcGsGiLsi~aak~G~-~V~aiDid~~av~~a~~N~~~N~v~~~~~~~~~~~~-----~~~~~fDlIvaN 191 (254) T 2nxc_A 118 LRPGDKVLDLGTGSGVLAIAAEKLGG-KALGVDIDPMVLPQAEANAKRNGVRPRFLEGSLEAA-----LPFGPFDLLVAN 191 (254) T ss_dssp CCTTCEEEEETCTTSHHHHHHHHTTC-EEEEEESCGGGHHHHHHHHHHTTCCCEEEESCHHHH-----GGGCCEEEEEEE T ss_pred CCCCCEEEEECCCCCHHHHHHHHCCC-EEEEEECCHHHHHHHHHHHHHHCCCEEEEECCHHHC-----CCCCCCCEEEEE T ss_conf 79979899971777888999984599-899998872788999998997099449998743451-----645786689998 Q ss_pred CCHHHHHHHHHHHH Q ss_conf 32246788999998 Q gi|254780398|r 125 LPYNIGTRLLFNWI 138 (284) Q Consensus 125 LPYnIss~Il~~ll 138 (284) +-+++-..++..+. T Consensus 192 i~~~~l~~l~~~l~ 205 (254) T 2nxc_A 192 LYAELHAALAPRYR 205 (254) T ss_dssp CCHHHHHHHHHHHH T ss_pred EEHHHHHHHHHHHH T ss_conf 10065688999999 No 52 >3f4k_A Putative methyltransferase; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; 2.30A {Bacteroides thetaiotaomicron} Probab=98.70 E-value=3.4e-08 Score=69.91 Aligned_cols=86 Identities=19% Similarity=0.267 Sum_probs=68.6 Q ss_pred CCCCCCCCCCHHHHHHHHHHCC-CCCCCEEEEECCCCCHHHHHHHHCCCCEEEEECCCCCCHHHHHHHHHHH--HCCCCC Q ss_conf 3658411239899999999719-8999879997589882346775023525998425543036887875322--001220 Q gi|254780398|r 23 KYMGQNFLLDLNILKKIAESSG-SLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQH--PNRLEI 99 (284) Q Consensus 23 k~lGQnFL~d~~i~~~iv~~~~-~~~~~~VlEIGpG~G~LT~~Ll~~~~~~v~aiEiD~~~~~~l~~~~~~~--~~~~~i 99 (284) +++|.. ++...++.++.++ +.++..|||||||+|..|..|+++...+|++||+++.+++.+++..... .+++++ T Consensus 24 ~r~~pg---~~~~~~~~l~~l~~l~~~~rVLDlGCG~G~~~~~La~~~~~~v~gvD~S~~ml~~a~~~~~~~~~~~~v~~ 100 (257) T 3f4k_A 24 KRQGPG---SPEATRKAVSFINELTDDAKIADIGCGTGGQTLFLADYVKGQITGIDLFPDFIEIFNENAVKANCADRVKG 100 (257) T ss_dssp SCSSSC---CHHHHHHHHTTSCCCCTTCEEEEETCTTSHHHHHHHHHCCSEEEEEESCHHHHHHHHHHHHHTTCTTTEEE T ss_pred CCCCCC---CHHHHHHHHHHCCCCCCCCEEEEECCCCCHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHHHHHHCCHHH T ss_conf 356999---99999999983607999797999717797999999986699799996845677888987764321000011 Q ss_pred CHHHHCCCCHHH Q ss_conf 000000143155 Q gi|254780398|r 100 IQDDALKVDFEK 111 (284) Q Consensus 100 i~~Dal~~d~~~ 111 (284) +++|+.++.+++ T Consensus 101 ~~~d~~~l~~~~ 112 (257) T 3f4k_A 101 ITGSMDNLPFQN 112 (257) T ss_dssp EECCTTSCSSCT T ss_pred HHHHHHHHHCCC T ss_conf 130388762368 No 53 >3dtn_A Putative methyltransferase MM_2633; structural genomics, unknown function, PSI-2, protein structure initiative; 2.09A {Methanosarcina mazei} Probab=98.69 E-value=3e-08 Score=70.29 Aligned_cols=75 Identities=19% Similarity=0.342 Sum_probs=58.8 Q ss_pred HHHHHHHCC-CCCCCEEEEECCCCCHHHHHHHHCCCC-EEEEECCCCCCHHHHHHHHHHHHCCCCCCHHHHCCCCHHH Q ss_conf 999999719-899987999758988234677502352-5998425543036887875322001220000000143155 Q gi|254780398|r 36 LKKIAESSG-SLDGITVIEIGAGPGNLTQMLLTLGAR-KVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEK 111 (284) Q Consensus 36 ~~~iv~~~~-~~~~~~VlEIGpG~G~LT~~Ll~~~~~-~v~aiEiD~~~~~~l~~~~~~~~~~~~ii~~Dal~~d~~~ 111 (284) ...+...+. ..++..|||||||+|.+|..|+++.+. +++++|+++.+++.+++.+.... +++++++|+.++++++ T Consensus 32 ~~~~~~~~~~~~~~~~VLDiGcG~G~~~~~l~~~~~~~~v~giD~s~~~l~~A~~~~~~~~-~v~~~~~D~~~~~~~~ 108 (234) T 3dtn_A 32 YGVSVSIASVDTENPDILDLGAGTGLLSAFLMEKYPEATFTLVDMSEKMLEIAKNRFRGNL-KVKYIEADYSKYDFEE 108 (234) T ss_dssp HHHHHHTCCCSCSSCEEEEETCTTSHHHHHHHHHCTTCEEEEEESCHHHHHHHHHHTCSCT-TEEEEESCTTTCCCCS T ss_pred HHHHHHHHHCCCCCCEEEEECCCCCHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHCCC-CEEEEEEECCCCCCCC T ss_conf 9999998435699995999817685999999998899689999585045789998630277-6247742001345445 No 54 >2yqz_A Hypothetical protein TTHA0223; RNA methyltransferase, SAM, structural genomics, NPPSFA; HET: SAM; 1.80A {Thermus thermophilus HB8} PDB: 2yr0_A Probab=98.68 E-value=3.8e-08 Score=69.62 Aligned_cols=89 Identities=17% Similarity=0.315 Sum_probs=65.6 Q ss_pred HHHHHHHHCC-CCCCCEEEEECCCCCHHHHHHHHCCCCEEEEECCCCCCHHHHHHHHHHHHCCCCCCHHHHCCCCHHHHC Q ss_conf 9999999719-899987999758988234677502352599842554303688787532200122000000014315521 Q gi|254780398|r 35 ILKKIAESSG-SLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFF 113 (284) Q Consensus 35 i~~~iv~~~~-~~~~~~VlEIGpG~G~LT~~Ll~~~~~~v~aiEiD~~~~~~l~~~~~~~~~~~~ii~~Dal~~d~~~~~ 113 (284) +...+...+. ..++..|||||||+|.+|..++++++ +|+++|+.+.+++.+++.......+++++++|+.++++++- T Consensus 26 ~~~~l~~~~~~~~~~~~vLDiGcG~G~~t~~la~~~~-~V~gvD~S~~~l~~a~~r~~~~~~~v~~~~~da~~l~~~~~- 103 (263) T 2yqz_A 26 IATAMASAVHPKGEEPVFLELGVGTGRIALPLIARGY-RYIALDADAAMLEVFRQKIAGVDRKVQVVQADARAIPLPDE- 103 (263) T ss_dssp HHHHHHHHCCCSSSCCEEEEETCTTSTTHHHHHTTTC-EEEEEESCHHHHHHHHHHTTTSCTTEEEEESCTTSCCSCTT- T ss_pred HHHHHHHHHCCCCCCCEEEEECCCCCHHHHHHHHCCC-EEEEEECCHHHHHHHHHHCCCCCCCCHHHHHCCCCCCCCCC- T ss_conf 9999998612358999899951788699999996699-89999898999999874021011441022201222346676- Q ss_pred CCCCCEEEEECCCHH Q ss_conf 332220112023224 Q gi|254780398|r 114 NISSPIRIIANLPYN 128 (284) Q Consensus 114 ~~~~~~~vvgNLPYn 128 (284) .--.|+++.-.+ T Consensus 104 ---sfD~V~~~~~l~ 115 (263) T 2yqz_A 104 ---SVHGVIVVHLWH 115 (263) T ss_dssp ---CEEEEEEESCGG T ss_pred ---CCCEEEECCHHH T ss_conf ---104787512277 No 55 >1nw3_A Histone methyltransferase DOT1L; HDOT1, histone lysine methyltransferase,; HET: SAM; 2.50A {Homo sapiens} SCOP: c.66.1.31 Probab=98.68 E-value=5.5e-08 Score=68.64 Aligned_cols=94 Identities=10% Similarity=0.225 Sum_probs=72.7 Q ss_pred CCHHHHHHHHHHCCCCCCCEEEEECCCCCHHHHHHHHC-CCCEEEEECCCCCCHHHHHHHHHHH----------HCCCCC Q ss_conf 39899999999719899987999758988234677502-3525998425543036887875322----------001220 Q gi|254780398|r 31 LDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTL-GARKVIVIEKDQQFFPILKDISSQH----------PNRLEI 99 (284) Q Consensus 31 ~d~~i~~~iv~~~~~~~~~~VlEIGpG~G~LT~~Ll~~-~~~~v~aiEiD~~~~~~l~~~~~~~----------~~~~~i 99 (284) .....+..|++.+++.+++.|++||||.|.++..++.. +++++++||+.+..++.+++..... ..++++ T Consensus 139 ~~~~~~~~i~~~~~l~~~~~~~DiG~G~G~~~~~~a~~~~~~~~~Giei~~~~~~~A~~~~~~~~~~~~~~g~~~~~v~~ 218 (416) T 1nw3_A 139 TSFDLVAQMIDEIKMTDDDLFVDLGSGVGQVVLQVAAATNCKHHYGVEKADIPAKYAETMDREFRKWMKWYGKKHAEYTL 218 (416) T ss_dssp CCHHHHHHHHHHSCCCTTCEEEEETCTTSHHHHHHHHHCCCSEEEEEECSHHHHHHHHHHHHHHHHHHHHHTCCCCCEEE T ss_pred HHHHHHHHHHHHHCCCCCCEEEECCCCCCHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHHHHHHHHHCCCCCCEEE T ss_conf 40999999999708999988996688888899999997699889999799999999999999998877762677774599 Q ss_pred CHHHHCCCCHHHHCCCCCCEEEEECC Q ss_conf 00000014315521332220112023 Q gi|254780398|r 100 IQDDALKVDFEKFFNISSPIRIIANL 125 (284) Q Consensus 100 i~~Dal~~d~~~~~~~~~~~~vvgNL 125 (284) ++||+++.++.+... .....++.|+ T Consensus 219 ~~gD~~~~~~~~~~~-~adVv~~n~~ 243 (416) T 1nw3_A 219 ERGDFLSEEWRERIA-NTSVIFVNNF 243 (416) T ss_dssp EECCTTSHHHHHHHH-HCSEEEECCT T ss_pred EECCCCCCCCCCCCC-CCEEEEECCC T ss_conf 976656774100267-9859999871 No 56 >2okc_A Type I restriction enzyme stysji M protein; NP_813429.1, N-6 DNA methylase, structural genomics; HET: SAM; 2.20A {Bacteroides thetaiotaomicron vpi-5482} SCOP: c.66.1.45 Probab=98.68 E-value=2.6e-07 Score=64.42 Aligned_cols=183 Identities=14% Similarity=0.145 Sum_probs=113.0 Q ss_pred HHHHCCCCCCCCCCCCCCCCHHHHHHHHHHCCCCCCCEEEEECCCCCHHHHHHHHCC--------------CCEEEEECC Q ss_conf 999818984336584112398999999997198999879997589882346775023--------------525998425 Q gi|254780398|r 13 ILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLG--------------ARKVIVIEK 78 (284) Q Consensus 13 ll~~~~~~p~k~lGQnFL~d~~i~~~iv~~~~~~~~~~VlEIGpG~G~LT~~Ll~~~--------------~~~v~aiEi 78 (284) ++.++.-.-+|..||. .+-+.+++-||+.+++..++.|++-.||.|.+..+..+.- ...+.++|+ T Consensus 138 ll~~~a~~~~k~~Gqf-fTP~~Iv~~mv~ll~~~~~~~IlDPacGsG~fL~~~~~~~~~~~~~~~~~~~~~~~~i~G~e~ 216 (445) T 2okc_A 138 ILEKNGQDKKSGAGQY-FTPRPLIQAMVDCINPQMGETVCDPACGTGGFLLTAYDYMKGQSASKEKRDFLRDKALHGVDN 216 (445) T ss_dssp HHHHHHTCTTTCCGGG-CCCHHHHHHHHHHHCCCTTCCEEETTCTTCHHHHHHHHHHHTCC-CCHHHHHHHHTTEEEEES T ss_pred HHHHHHHHCCCCCCEE-CCCHHHHHHHHHHCCCCCCCEEECCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHCEECEEC T ss_conf 9999987525438046-598999999997607999997812788976659999999987312277775530101423412 Q ss_pred CCCCHHHHHHHHHHH---HCCCCCCHHHHCCCCHHHHCCCCCCEEEEECCCHHHH--------------------HHHHH Q ss_conf 543036887875322---0012200000001431552133222011202322467--------------------88999 Q gi|254780398|r 79 DQQFFPILKDISSQH---PNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIG--------------------TRLLF 135 (284) Q Consensus 79 D~~~~~~l~~~~~~~---~~~~~ii~~Dal~~d~~~~~~~~~~~~vvgNLPYnIs--------------------s~Il~ 135 (284) |+..+...+-.+.-+ .....+.++|.+..+... .--.||||.||+.. ..++. T Consensus 217 ~~~~~~la~~nl~l~~~~~~~~~i~~~d~~~~~~~~-----~fD~Ii~NPPf~~~~~~~~~~~~~~~~~~~~~~~~~Fi~ 291 (445) T 2okc_A 217 TPLVVTLASMNLYLHGIGTDRSPIVCEDSLEKEPST-----LVDVILANPPFGTRPAGSVDINRPDFYVETKNNQLNFLQ 291 (445) T ss_dssp CHHHHHHHHHHHHHTTCCSSCCSEEECCTTTSCCSS-----CEEEEEECCCSSCCCTTCCCCCCTTSSSCCSCHHHHHHH T ss_pred CHHHHHHHHHHCCCCCCCCCCCEEECCCHHHHCCCC-----CCCEEECCCCCCCCCCCCCCCCHHHHCCCCCCHHHHHHH T ss_conf 099999999623102776432012215303202434-----687224589978886553310224430123307799999 Q ss_pred HHHHHHCCCCCCCHHHHEEEHHHHHHHHHCCCHHHHHHH-HHHHCCCCCEEEECCCCCCEECCCCCCCEEEEEECCCC Q ss_conf 998520100000011020334478875301231233234-54320133201200011000010578757887301258 Q gi|254780398|r 136 NWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRL-SVLTGWRTKATMMFDISPHVFFPSPKVTSTVIHFIPHL 212 (284) Q Consensus 136 ~ll~~~~~~~~~~~~vlmvQkEvA~Rl~a~pg~k~Yg~L-Sv~~q~~~~v~~~~~V~~~~F~P~PkVdS~vi~l~pk~ 212 (284) +.+... . ++.+.+++ +-.-+ ....+. +..+ .-++ -.+.+..+...|++.|.+ -.|.++++-+...+ T Consensus 292 ~~l~~L-k-~~G~~aiI-vP~~~----L~~~~~--~~~iR~~Ll-~~~~i~~Ii~lp~~~F~~-t~v~t~Ilvl~K~k 358 (445) T 2okc_A 292 HMMLML-K-TGGRAAVV-LPDNV----LFEAGA--GETIRKRLL-QDFNLHTILRLPTGIFYA-QGVKANVLFFSKGQ 358 (445) T ss_dssp HHHHHE-E-EEEEEEEE-EEHHH----HHCSTH--HHHHHHHHH-HHEEEEEEEECCSSSSSS-TTCCEEEEEEEESS T ss_pred HHHHHH-C-CCCEEEEE-ECCHH----HHCCCH--HHHHHHHHH-HCCCCEEEEECCCCCCCC-CCCCEEEEEEECCC T ss_conf 999982-1-79859999-34288----647630--589999999-819852899997255468-99965999998999 No 57 >3lec_A NADB-rossmann superfamily protein; PSI, MCSG, structural genomics, midwest center for structural genomics, protein structure initiative; 1.80A {Streptococcus agalactiae} Probab=98.67 E-value=1.1e-07 Score=66.87 Aligned_cols=98 Identities=19% Similarity=0.204 Sum_probs=74.9 Q ss_pred HHHHHHHCCCCCCCEEEEECCCCCHHHHHHHHCC-CCEEEEECCCCCCHHHHHHHHHHH--HCCCCCCHHHHCCCCHHHH Q ss_conf 9999997198999879997589882346775023-525998425543036887875322--0012200000001431552 Q gi|254780398|r 36 LKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLG-ARKVIVIEKDQQFFPILKDISSQH--PNRLEIIQDDALKVDFEKF 112 (284) Q Consensus 36 ~~~iv~~~~~~~~~~VlEIGpG~G~LT~~Ll~~~-~~~v~aiEiD~~~~~~l~~~~~~~--~~~~~ii~~Dal~~d~~~~ 112 (284) +..|++.+ .+++.|++||+|.|.|+..|++.+ +.+|+|+|+++..++.+++....+ .++++++.+|.+....+. T Consensus 12 L~~ia~~v--~~g~~vlDIG~g~G~l~i~l~~~~~~~~viavDi~~~~l~~A~~n~~~~gl~~~I~~~~~Dgl~~~~~~- 88 (230) T 3lec_A 12 LQKVANYV--PKGARLLDVGSDHAYLPIFLLQMGYCDFAIAGEVVNGPYQSALKNVSEHGLTSKIDVRLANGLSAFEEA- 88 (230) T ss_dssp HHHHHTTS--CTTEEEEEETCSTTHHHHHHHHTTCEEEEEEEESSHHHHHHHHHHHHHTTCTTTEEEEECSGGGGCCGG- T ss_pred HHHHHHHC--CCCCEEEEECCCHHHHHHHHHHCCCCCEEEEEECCHHHHHHHHHHHHHCCCCCCEEEEECCCCCCCCCC- T ss_conf 99999658--998999995286499999999839998799930999999999999998399875799988754100455- Q ss_pred CCCCCCEEEEECCCHHHHHHHHHHHH Q ss_conf 13322201120232246788999998 Q gi|254780398|r 113 FNISSPIRIIANLPYNIGTRLLFNWI 138 (284) Q Consensus 113 ~~~~~~~~vvgNLPYnIss~Il~~ll 138 (284) ......++++.++..-..|+.... T Consensus 89 --e~~d~iiiag~g~~~i~~Il~~~~ 112 (230) T 3lec_A 89 --DNIDTITICGMGGRLIADILNNDI 112 (230) T ss_dssp --GCCCEEEEEEECHHHHHHHHHHTG T ss_pred --CCCEEEEECCCCHHHHHHHHHHHH T ss_conf --541278642875889999999999 No 58 >1r18_A Protein-L-isoaspartate(D-aspartate)-O- methyltransferase; isomerization, protein repair, S- adenosyl homocysteine; HET: SAH; 2.20A {Drosophila melanogaster} SCOP: c.66.1.7 Probab=98.66 E-value=8.3e-08 Score=67.51 Aligned_cols=83 Identities=18% Similarity=0.207 Sum_probs=65.9 Q ss_pred CCCCCCCCHHHHHHHHHHC--CCCCCCEEEEECCCCCHHHHHHHHCC-------CCEEEEECCCCCCHHHHHHHHHHH-- Q ss_conf 5841123989999999971--98999879997589882346775023-------525998425543036887875322-- Q gi|254780398|r 25 MGQNFLLDLNILKKIAESS--GSLDGITVIEIGAGPGNLTQMLLTLG-------ARKVIVIEKDQQFFPILKDISSQH-- 93 (284) Q Consensus 25 lGQnFL~d~~i~~~iv~~~--~~~~~~~VlEIGpG~G~LT~~Ll~~~-------~~~v~aiEiD~~~~~~l~~~~~~~-- 93 (284) .|| ++..+.+..++.+.+ ++.+++.|||||+|+|.+|..+++.. ..+|++||+|+.+++.+++.+... T Consensus 61 ~~~-~is~P~~~a~~l~~L~~~l~pg~~VLeIG~GtGy~ta~la~l~g~~g~~~~~~V~~iE~~~~l~~~A~~~l~~~~~ 139 (227) T 1r18_A 61 GGV-TISAPHMHAFALEYLRDHLKPGARILDVGSGSGYLTACFYRYIKAKGVDADTRIVGIEHQAELVRRSKANLNTDDR 139 (227) T ss_dssp TTE-EECCHHHHHHHHHHTTTTCCTTCEEEEESCTTSHHHHHHHHHHHHSCCCTTCEEEEEESCHHHHHHHHHHHHHHHH T ss_pred CCC-EECCHHHHHHHHHHHHHHCCCCCEEEEECCCCCHHHHHHHHHHHHCCCCCCCEEEEEECCHHHHHHHHHHHHHCCC T ss_conf 998-8633699999999767538999889995799779999999985331577766899994789999999999976051 Q ss_pred ----HCCCCCCHHHHCCCC Q ss_conf ----001220000000143 Q gi|254780398|r 94 ----PNRLEIIQDDALKVD 108 (284) Q Consensus 94 ----~~~~~ii~~Dal~~d 108 (284) -.+++++++|+..-. T Consensus 140 ~~l~~~nv~~~~~D~~~g~ 158 (227) T 1r18_A 140 SMLDSGQLLIVEGDGRKGY 158 (227) T ss_dssp HHHHHTSEEEEESCGGGCC T ss_pred HHCCCCCEEEEECCCCCCC T ss_conf 0205663699977845577 No 59 >2o57_A Putative sarcosine dimethylglycine methyltransferase; structural genomics, protein structure initiative, PSI-2; 1.95A {Galdieria sulphuraria} SCOP: c.66.1.18 Probab=98.66 E-value=4.4e-08 Score=69.23 Aligned_cols=79 Identities=11% Similarity=0.101 Sum_probs=63.4 Q ss_pred HHHHHHHHHHCCCCCCCEEEEECCCCCHHHHHHHHCCCCEEEEECCCCCCHHHHHHHHHH--HHCCCCCCHHHHCCCCHH Q ss_conf 899999999719899987999758988234677502352599842554303688787532--200122000000014315 Q gi|254780398|r 33 LNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQ--HPNRLEIIQDDALKVDFE 110 (284) Q Consensus 33 ~~i~~~iv~~~~~~~~~~VlEIGpG~G~LT~~Ll~~~~~~v~aiEiD~~~~~~l~~~~~~--~~~~~~ii~~Dal~~d~~ 110 (284) +.++.++....++.++..|||||||+|.++..|++....+|++|++++.+++.+++.... ..++++++.+|+.+++++ T Consensus 68 ~~~~~~l~~~~~l~~~~~VLDiGCG~G~~~~~la~~~g~~v~gvD~s~~~i~~a~~~~~~~gl~~~v~~~~~d~~~l~~~ 147 (297) T 2o57_A 68 EWLASELAMTGVLQRQAKGLDLGAGYGGAARFLVRKFGVSIDCLNIAPVQNKRNEEYNNQAGLADNITVKYGSFLEIPCE 147 (297) T ss_dssp HHHHHHHHHTTCCCTTCEEEEETCTTSHHHHHHHHHHCCEEEEEESCHHHHHHHHHHHHHHTCTTTEEEEECCTTSCSSC T ss_pred HHHHHHHHHHCCCCCCCEEEEECCCCCHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHHCCCCCCCEEEECCCCCCCCC T ss_conf 99999999846989999899988999989999999639859999674277888876443205676622786122256766 Q ss_pred H Q ss_conf 5 Q gi|254780398|r 111 K 111 (284) Q Consensus 111 ~ 111 (284) + T Consensus 148 ~ 148 (297) T 2o57_A 148 D 148 (297) T ss_dssp T T ss_pred C T ss_conf 6 No 60 >3bkx_A SAM-dependent methyltransferase; YP_807781.1, cyclopropane-fatty-acyl-phospholipid synthase- like protein, methyltransferase domain; 1.85A {Lactobacillus casei atcc 334} Probab=98.66 E-value=9.8e-08 Score=67.07 Aligned_cols=93 Identities=19% Similarity=0.185 Sum_probs=65.3 Q ss_pred HHHHHHCCCCCCCEEEEECCCCCHHHHHHHHCC-C-CEEEEECCCCC------CHHHHHHHHHHH--HCCCCCCHHHHCC Q ss_conf 999997198999879997589882346775023-5-25998425543------036887875322--0012200000001 Q gi|254780398|r 37 KKIAESSGSLDGITVIEIGAGPGNLTQMLLTLG-A-RKVIVIEKDQQ------FFPILKDISSQH--PNRLEIIQDDALK 106 (284) Q Consensus 37 ~~iv~~~~~~~~~~VlEIGpG~G~LT~~Ll~~~-~-~~v~aiEiD~~------~~~~l~~~~~~~--~~~~~ii~~Dal~ 106 (284) .++++.+++.+|+.|||||||+|.+|..|+++. + .+|++|++++. +++.+++..... .++++++.+|+.. T Consensus 33 ~~ll~~~~i~pG~rVLDiGCG~G~~t~~la~~~g~~~~V~gvD~s~~~~~~~~~l~~A~~~~~~~~~~~~i~~~~~d~~~ 112 (275) T 3bkx_A 33 LAIAEAWQVKPGEKILEIGCGQGDLSAVLADQVGSSGHVTGIDIASPDYGAPLTLGQAWNHLLAGPLGDRLTVHFNTNLS 112 (275) T ss_dssp HHHHHHHTCCTTCEEEEESCTTSHHHHHHHHHHCTTCEEEEECSSCTTCCSSSCHHHHHHHHHTSTTGGGEEEECSCCTT T ss_pred HHHHHHCCCCCCCEEEEECCCCCHHHHHHHHHHCCCCCEEEEECCHHHHHHHHHHHHHHHHHHHCCCCCCCCEEHHHHHH T ss_conf 99998679798698999665388578999998387775234767777766668999999998855777740102001544 Q ss_pred CCHHHHCCCCCCEEEEECCCHHH Q ss_conf 43155213322201120232246 Q gi|254780398|r 107 VDFEKFFNISSPIRIIANLPYNI 129 (284) Q Consensus 107 ~d~~~~~~~~~~~~vvgNLPYnI 129 (284) .+..++.+..-...+.++.=+++ T Consensus 113 ~~~lp~~~~sFD~V~~~~~l~~~ 135 (275) T 3bkx_A 113 DDLGPIADQHFDRVVLAHSLWYF 135 (275) T ss_dssp TCCGGGTTCCCSEEEEESCGGGS T ss_pred HCCCCCCCCCCCEEEEEEEEECC T ss_conf 02476445762689780163328 No 61 >3lbf_A Protein-L-isoaspartate O-methyltransferase; modified rossman-type fold, S-adenosyl-L- methionine; HET: SAH; 1.80A {Escherichia coli} Probab=98.65 E-value=1e-07 Score=66.89 Aligned_cols=80 Identities=19% Similarity=0.222 Sum_probs=68.3 Q ss_pred CCCCCCCCHHHHHHHHHHCCCCCCCEEEEECCCCCHHHHHHHHCCCCEEEEECCCCCCHHHHHHHHHHHH-CCCCCCHHH Q ss_conf 5841123989999999971989998799975898823467750235259984255430368878753220-012200000 Q gi|254780398|r 25 MGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQHP-NRLEIIQDD 103 (284) Q Consensus 25 lGQnFL~d~~i~~~iv~~~~~~~~~~VlEIGpG~G~LT~~Ll~~~~~~v~aiEiD~~~~~~l~~~~~~~~-~~~~ii~~D 103 (284) .|| ++..+.+..++.+.+++.+++.|||||+|+|..|--|++. +.++.++|.++.++...++.+.... .++.+++|| T Consensus 56 ~~~-~is~P~~~A~~l~~L~~~~g~~VLeIGsGtGY~tAlla~l-~~~v~~ve~~~~~~~~a~~~~~~~~~~nv~~~~gd 133 (210) T 3lbf_A 56 QGQ-TISQPYMVARMTELLELTPQSRVLEIGTGSGYQTAILAHL-VQHVCSVERIKGLQWQARRRLKNLDLHNVSTRHGD 133 (210) T ss_dssp TSC-EECCHHHHHHHHHHTTCCTTCEEEEECCTTSHHHHHHHHH-SSEEEEEESCHHHHHHHHHHHHHTTCCSEEEEESC T ss_pred CCC-EECCCHHHHHHHHHCCCCCCCEEEEECCCHHHHHHHHHHH-HCEECCCCCCHHHHHHHHHHHHHHCCCCCEEEECC T ss_conf 981-7544367476787565689987999678406999999986-28325454222899999999886266671799857 Q ss_pred HCC Q ss_conf 001 Q gi|254780398|r 104 ALK 106 (284) Q Consensus 104 al~ 106 (284) ... T Consensus 134 g~~ 136 (210) T 3lbf_A 134 GWQ 136 (210) T ss_dssp GGG T ss_pred CCC T ss_conf 776 No 62 >3d2l_A SAM-dependent methyltransferase; ZP_00538691.1, structural genomics, joint center for structural genomics, JCSG; HET: MSE; 1.90A {Exiguobacterium sibiricum 255-15} Probab=98.65 E-value=5.7e-08 Score=68.54 Aligned_cols=74 Identities=15% Similarity=0.303 Sum_probs=60.9 Q ss_pred HHHHHHHHHCCCCCCCEEEEECCCCCHHHHHHHHCCCCEEEEECCCCCCHHHHHHHHHHHHCCCCCCHHHHCCCCHHH Q ss_conf 999999997198999879997589882346775023525998425543036887875322001220000000143155 Q gi|254780398|r 34 NILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEK 111 (284) Q Consensus 34 ~i~~~iv~~~~~~~~~~VlEIGpG~G~LT~~Ll~~~~~~v~aiEiD~~~~~~l~~~~~~~~~~~~ii~~Dal~~d~~~ 111 (284) ..++.+.+.+. +++.|||+|||+|.+|..+++ ++ +|+++|+++.+++.+++.......+++++++|+.++++++ T Consensus 22 ~~~~~i~~~~~--~~~~VLD~GCG~G~~~~~la~-~~-~v~giD~s~~~l~~a~~~~~~~~~~i~~~~~d~~~~~~~~ 95 (243) T 3d2l_A 22 EWVAWVLEQVE--PGKRIADIGCGTGTATLLLAD-HY-EVTGVDLSEEMLEIAQEKAMETNRHVDFWVQDMRELELPE 95 (243) T ss_dssp HHHHHHHHHSC--TTCEEEEESCTTCHHHHHHTT-TS-EEEEEESCHHHHHHHHHHHHHTTCCCEEEECCGGGCCCSS T ss_pred HHHHHHHHHCC--CCCEEEEECCCCCHHHHHHHH-CC-EEEEEECCHHHHHHHHHHHHHCCCEEEECCCCHHCCCCCC T ss_conf 99999998689--999999968878799999861-85-7999988518899988765301202331012000011243 No 63 >3b3j_A Histone-arginine methyltransferase CARM1; protein arginine methyltransferase 4, APO catalytic domain, alternative splicing; 2.55A {Rattus norvegicus} Probab=98.65 E-value=4.9e-08 Score=68.92 Aligned_cols=83 Identities=18% Similarity=0.300 Sum_probs=62.5 Q ss_pred CCCCHHHHHH----HHHHCCCCCCCEEEEECCCCCHHHHHHHHCCCCEEEEECCCCCCHHHHHHHHHH--HHCCCCCCHH Q ss_conf 1239899999----999719899987999758988234677502352599842554303688787532--2001220000 Q gi|254780398|r 29 FLLDLNILKK----IAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQ--HPNRLEIIQD 102 (284) Q Consensus 29 FL~d~~i~~~----iv~~~~~~~~~~VlEIGpG~G~LT~~Ll~~~~~~v~aiEiD~~~~~~l~~~~~~--~~~~~~ii~~ 102 (284) .|.|..=.+. |.+.....+++.||+||+|+|.|+...++.||++|+|||..+ ++..+++.... ..+++++++| T Consensus 136 ML~D~vRt~aY~~AI~~n~~~~~~kvVLDvGcGtGiLs~~AA~aGA~kV~avE~S~-~a~~A~~~v~~Ngl~d~I~vi~g 214 (480) T 3b3j_A 136 MMQDYVRTGTYQRAILQNHTDFKDKIVLDVGCGSGILSFFAAQAGARKIYAVEAST-MAQHAEVLVKSNNLTDRIVVIPG 214 (480) T ss_dssp HHHHHHHHHHHHHHHHHTGGGTTTCEEEEESCSTTHHHHHHHHTTCSEEEEEECHH-HHHHHHHHHHHTTCTTTEEEEES T ss_pred HCCCHHHHHHHHHHHHHCHHHCCCCEEEEECCCCCHHHHHHHHCCCCEEEEECCHH-HHHHHHHHHHHCCCCCCEEEEEC T ss_conf 80988789999999985755359898999688836999999985998899990959-99999999997499861689975 Q ss_pred HHCCCCHHHH Q ss_conf 0001431552 Q gi|254780398|r 103 DALKVDFEKF 112 (284) Q Consensus 103 Dal~~d~~~~ 112 (284) |+.++++++- T Consensus 215 ~~e~l~lpe~ 224 (480) T 3b3j_A 215 KVEEVSLPEQ 224 (480) T ss_dssp CTTTCCCSSC T ss_pred CHHHCCCCCC T ss_conf 2765676766 No 64 >1xtp_A LMAJ004091AAA; SGPP, structural genomics, PSI, protein structure initiative, SAM-dependent methyltransferase; HET: SAI; 1.94A {Leishmania major strain friedlin} SCOP: c.66.1.42 Probab=98.64 E-value=9.7e-08 Score=67.10 Aligned_cols=104 Identities=14% Similarity=0.112 Sum_probs=74.4 Q ss_pred CHHHHHHHHHHCCCCCCCEEEEECCCCCHHHHHHHHCCCCEEEEECCCCCCHHHHHHHHHHHHCCCCCCHHHHCCCCHHH Q ss_conf 98999999997198999879997589882346775023525998425543036887875322001220000000143155 Q gi|254780398|r 32 DLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEK 111 (284) Q Consensus 32 d~~i~~~iv~~~~~~~~~~VlEIGpG~G~LT~~Ll~~~~~~v~aiEiD~~~~~~l~~~~~~~~~~~~ii~~Dal~~d~~~ 111 (284) |....+.+.+.+.......|||||||+|.+|..|+...+.+|++||+.+.+++.+++.....+ +++++++|+..+++++ T Consensus 78 d~~~s~~fl~~~~~~~~~~vLDiGcG~G~~t~~ll~~~~~~V~~vD~s~~~l~~a~~~~~~~~-~~~~~~~d~~~~~~~~ 156 (254) T 1xtp_A 78 DIEGSRNFIASLPGHGTSRALDCGAGIGRITKNLLTKLYATTDLLEPVKHMLEEAKRELAGMP-VGKFILASMETATLPP 156 (254) T ss_dssp HHHHHHHHHHTSTTCCCSEEEEETCTTTHHHHHTHHHHCSEEEEEESCHHHHHHHHHHTTTSS-EEEEEESCGGGCCCCS T ss_pred HHHHHHHHHHHCCCCCCCEEEEECCCCCHHHHHHHHHCCCEEEEEECCHHHHHHHHHCCCCCC-EEEEEECCHHHCCCCC T ss_conf 899899999857335897389966788599999998639858999198899999864015774-2799977875688877 Q ss_pred HCCCCCCEEEEECCCHHHHHHHHHHHHH Q ss_conf 2133222011202322467889999985 Q gi|254780398|r 112 FFNISSPIRIIANLPYNIGTRLLFNWIS 139 (284) Q Consensus 112 ~~~~~~~~~vvgNLPYnIss~Il~~ll~ 139 (284) - .-...+....-++++.+-+.+++. T Consensus 157 ~---~fD~I~~~~~l~hl~d~~~~~~l~ 181 (254) T 1xtp_A 157 N---TYDLIVIQWTAIYLTDADFVKFFK 181 (254) T ss_dssp S---CEEEEEEESCGGGSCHHHHHHHHH T ss_pred C---CCCEEEEEEEHHCCCHHHHHHHHH T ss_conf 7---634676421100476145789999 No 65 >3kr9_A SAM-dependent methyltransferase; class I rossmann-like methyltransferase fold; 2.00A {Streptococcus pneumoniae} PDB: 3ku1_A* Probab=98.64 E-value=1.1e-07 Score=66.69 Aligned_cols=97 Identities=16% Similarity=0.168 Sum_probs=71.3 Q ss_pred HHHHHHHCCCCCCCEEEEECCCCCHHHHHHHHCCC-CEEEEECCCCCCHHHHHHHHHHH--HCCCCCCHHHHCCCCHHHH Q ss_conf 99999971989998799975898823467750235-25998425543036887875322--0012200000001431552 Q gi|254780398|r 36 LKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGA-RKVIVIEKDQQFFPILKDISSQH--PNRLEIIQDDALKVDFEKF 112 (284) Q Consensus 36 ~~~iv~~~~~~~~~~VlEIGpG~G~LT~~Ll~~~~-~~v~aiEiD~~~~~~l~~~~~~~--~~~~~ii~~Dal~~d~~~~ 112 (284) +..+++.+ .+++.|+|||||+|.++..|+++++ .+|+|+|+++..++.+++....+ .++++++.+|+++.-... T Consensus 6 L~~i~~~v--~~g~~ilDiG~g~G~~~~~l~~~~~~~~v~avDi~~~~l~~a~~n~~~~~l~~~i~~~~~D~~~~~~~~- 82 (225) T 3kr9_A 6 LELVASFV--SQGAILLDVGSDHAYLPIELVERGQIKSAIAGEVVEGPYQSAVKNVEAHGLKEKIQVRLANGLAAFEET- 82 (225) T ss_dssp HHHHHTTS--CTTEEEEEETCSTTHHHHHHHHTTSEEEEEEEESSHHHHHHHHHHHHHTTCTTTEEEEECSGGGGCCGG- T ss_pred HHHHHHHC--CCCCEEEEECCCHHHHHHHHHHCCCCCEEEEEECCHHHHHHHHHHHHHCCCCCCEEEEECCCCHHHHCC- T ss_conf 99999558--998989996185699999999809998899710999999999999998299987799988741322034- Q ss_pred CCCCCCEEEEECCCHHHHHHHHHHH Q ss_conf 1332220112023224678899999 Q gi|254780398|r 113 FNISSPIRIIANLPYNIGTRLLFNW 137 (284) Q Consensus 113 ~~~~~~~~vvgNLPYnIss~Il~~l 137 (284) ......+++...+....+|+... T Consensus 83 --~~~d~iviag~g~~~i~~il~~~ 105 (225) T 3kr9_A 83 --DQVSVITIAGMGGRLIARILEEG 105 (225) T ss_dssp --GCCCEEEEEEECHHHHHHHHHHT T ss_pred --CCCCHHHCCCCCHHHHHHHHHHH T ss_conf --66772105387789999999988 No 66 >3hm2_A Precorrin-6Y C5,15-methyltransferase; alpha-beta-sandwich, structural genomics, PSI-2, protein structure initiative; 2.21A {Corynebacterium diphtheriae} Probab=98.63 E-value=6.6e-08 Score=68.11 Aligned_cols=78 Identities=12% Similarity=0.072 Sum_probs=62.8 Q ss_pred CCHHHHHHHHHHCCCCCCCEEEEECCCCCHHHHHHHHCCCC-EEEEECCCCCCHHHHHHHHHHHH-CCCCCCHHHHCCCC Q ss_conf 39899999999719899987999758988234677502352-59984255430368878753220-01220000000143 Q gi|254780398|r 31 LDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGAR-KVIVIEKDQQFFPILKDISSQHP-NRLEIIQDDALKVD 108 (284) Q Consensus 31 ~d~~i~~~iv~~~~~~~~~~VlEIGpG~G~LT~~Ll~~~~~-~v~aiEiD~~~~~~l~~~~~~~~-~~~~ii~~Dal~~d 108 (284) .-+.+-..++..+++.+++.|||||+|+|.+|..++...+. +|+++|+|+.+++.+++...... .+++++++|+.+.. T Consensus 9 tk~e~ra~~l~~L~~~pg~~vLDiGcG~G~~a~~~a~~~~~~~V~avD~~~~~~~~a~~~~~~~~~~~~~~~~~d~~~~~ 88 (178) T 3hm2_A 9 TKQHVRALAISALAPKPHETLWDIGGGSGSIAIEWLRSTPQTTAVCFEISEERRERILSNAINLGVSDRIAVQQGAPRAF 88 (178) T ss_dssp HHHHHHHHHHHHHCCCTTEEEEEESTTTTHHHHHHHTTSSSEEEEEECSCHHHHHHHHHHHHTTTCTTSEEEECCTTGGG T ss_pred CHHHHHHHHHHHCCCCCCCEEEEECCCCCHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHHCCCCEEEEEECCCHHC T ss_conf 58999999998559999799999766888899999996897769885089999999999999819997899994362002 No 67 >2b25_A Hypothetical protein; structural genomics, methyl transferase, SAM, structural genomics consortium, SGC; HET: SAM; 2.50A {Homo sapiens} SCOP: c.66.1.13 Probab=98.63 E-value=7.7e-08 Score=67.71 Aligned_cols=77 Identities=22% Similarity=0.316 Sum_probs=62.2 Q ss_pred CCHHHHHHHHHHCCCCCCCEEEEECCCCCHHHHHHHHC-CCC-EEEEECCCCCCHHHHHHHHHHH------------HCC Q ss_conf 39899999999719899987999758988234677502-352-5998425543036887875322------------001 Q gi|254780398|r 31 LDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTL-GAR-KVIVIEKDQQFFPILKDISSQH------------PNR 96 (284) Q Consensus 31 ~d~~i~~~iv~~~~~~~~~~VlEIGpG~G~LT~~Ll~~-~~~-~v~aiEiD~~~~~~l~~~~~~~------------~~~ 96 (284) +=+.=+..|+..+++.+++.|||+|+|.|++|..|++. ++. +|+++|+++.+++.+++++..+ ..+ T Consensus 89 iypkD~a~Il~~l~I~PG~rVLE~GtGsG~lt~~LAr~vgp~G~V~~~D~~~~~~~~Ar~n~~~~~~~~~~~~~~~~~~~ 168 (336) T 2b25_A 89 TFPKDINMILSMMDINPGDTVLEAGSGSGGMSLFLSKAVGSQGRVISFEVRKDHHDLAKKNYKHWRDSWKLSHVEEWPDN 168 (336) T ss_dssp CCHHHHHHHHHHHTCCTTCEEEEECCTTSHHHHHHHHHHCTTCEEEEEESSHHHHHHHHHHHHHHHHHHTTTCSSCCCCC T ss_pred CCHHHHHHHHHHHCCCCCCEEEECCCCCCHHHHHHHHHHCCCCEEEEECCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCE T ss_conf 57168999999858999988998353777999999996289848998439999999999999974320001221136770 Q ss_pred CCCCHHHHCCC Q ss_conf 22000000014 Q gi|254780398|r 97 LEIIQDDALKV 107 (284) Q Consensus 97 ~~ii~~Dal~~ 107 (284) ++++++|+... T Consensus 169 v~~~~~di~~~ 179 (336) T 2b25_A 169 VDFIHKDISGA 179 (336) T ss_dssp EEEEESCTTCC T ss_pred EEEEECCHHHC T ss_conf 79997766652 No 68 >3eey_A Putative rRNA methylase; rRNA methylation, S-adenosyl-methionine, structural genomics, protein structure initiative, PSI; HET: SAM; 2.20A {Clostridium thermocellum atcc 27405} Probab=98.63 E-value=6e-08 Score=68.37 Aligned_cols=81 Identities=23% Similarity=0.365 Sum_probs=61.4 Q ss_pred CCCCCEEEEECCCCCHHHHHHHHC-C-CCEEEEECCCCCCHHHHHHHHHHH--HCCCCCCHHHHCCCCHHHHCCCCCCEE Q ss_conf 899987999758988234677502-3-525998425543036887875322--001220000000143155213322201 Q gi|254780398|r 45 SLDGITVIEIGAGPGNLTQMLLTL-G-ARKVIVIEKDQQFFPILKDISSQH--PNRLEIIQDDALKVDFEKFFNISSPIR 120 (284) Q Consensus 45 ~~~~~~VlEIGpG~G~LT~~Ll~~-~-~~~v~aiEiD~~~~~~l~~~~~~~--~~~~~ii~~Dal~~d~~~~~~~~~~~~ 120 (284) +.+|+.|||+|||+|.+|..|+++ + ..+|+++|+++.+++.+++..... .++++++++|+.+++ .+.+ ..... T Consensus 20 ik~G~~VLDlGcG~G~~t~~la~~~~~~~~V~giDis~~~l~~ar~~~~~~g~~~~v~~~~~d~~~~~--~~~~-~~~~~ 96 (197) T 3eey_A 20 VKEGDTVVDATCGNGNDTAFLASLVGENGRVFGFDIQDKAIANTTKKLTDLNLIDRVTLIKDGHQNMD--KYID-CPVKA 96 (197) T ss_dssp CCTTCEEEESCCTTSHHHHHHHHHHCTTCEEEEECSCHHHHHHHHHHHHHTTCGGGEEEECSCGGGGG--GTCC-SCEEE T ss_pred CCCCCEEEEEEEECCHHHHHHHHHHCCCEEEEEEECCHHHHHHHHHHHHHCCCCCCEEEEECCHHHHH--HCCC-CCCCE T ss_conf 89999999992048899999999838981999997388998999999998399877899985867601--2157-76430 Q ss_pred EEECCCHH Q ss_conf 12023224 Q gi|254780398|r 121 IIANLPYN 128 (284) Q Consensus 121 vvgNLPYn 128 (284) ++.+++|. T Consensus 97 ~~~~~~~~ 104 (197) T 3eey_A 97 VMFNLGYL 104 (197) T ss_dssp EEEEESBC T ss_pred EEEEEEEC T ss_conf 46525532 No 69 >3g5l_A Putative S-adenosylmethionine dependent methyltransferase; structural genomics, PSI-2, protein structure initiative; 2.35A {Listeria monocytogenes str} Probab=98.63 E-value=2.6e-08 Score=70.63 Aligned_cols=104 Identities=19% Similarity=0.277 Sum_probs=70.9 Q ss_pred CCCC-CCCHHHHHHHHHCCCCCCCCCCCCCCCCHHHHHHHHHHCCCCCCCEEEEECCCCCHHHHHHHHCCCCEEEEECCC Q ss_conf 9778-884479999998189843365841123989999999971989998799975898823467750235259984255 Q gi|254780398|r 1 MTMN-NKSHSLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKD 79 (284) Q Consensus 1 ~~~~-~~~~~i~~ll~~~~~~p~k~lGQnFL~d~~i~~~iv~~~~~~~~~~VlEIGpG~G~LT~~Ll~~~~~~v~aiEiD 79 (284) |.|. |.|... ..++.|.-..++..| +.+-.-...|.+.+...++..|||||||+|..|..+++.++.+|++|++. T Consensus 1 ~~~~~~~y~~~-~f~~~Y~~~~~~~~~---~~~~~~~~~i~~~lp~~~g~~VLDiGcG~G~~~~~l~~~g~~~v~giD~S 76 (253) T 3g5l_A 1 MSLKENKYDDK-HFFEQYSQMPRSKEG---LKAAGEWHELKKMLPDFNQKTVLDLGCGFGWHCIYAAEHGAKKVLGIDLS 76 (253) T ss_dssp -------------------------CH---HHHHHHHHHHHTTCCCCTTCEEEEETCTTCHHHHHHHHTTCSEEEEEESC T ss_pred CCCCCCCCCCH-HHHHHHHHHHCCHHH---HHHHHHHHHHHHHCCCCCCCEEEEECCCCCHHHHHHHHCCCCEEEEEECC T ss_conf 98873346889-999999872304455---76648899999846878969899983778499999996499989999485 Q ss_pred CCCHHHHHHHHHHHHCCCCCCHHHHCCCCHH Q ss_conf 4303688787532200122000000014315 Q gi|254780398|r 80 QQFFPILKDISSQHPNRLEIIQDDALKVDFE 110 (284) Q Consensus 80 ~~~~~~l~~~~~~~~~~~~ii~~Dal~~d~~ 110 (284) +.+++.+++.... .+++.+++|+..++++ T Consensus 77 ~~~i~~a~~~~~~--~~~~~~~~d~~~l~~~ 105 (253) T 3g5l_A 77 ERMLTEAKRKTTS--PVVCYEQKAIEDIAIE 105 (253) T ss_dssp HHHHHHHHHHCCC--TTEEEEECCGGGCCCC T ss_pred CHHHHHHHHHHCC--CCCCCCCCCCCCCCCC T ss_conf 0656899874034--4432222222456656 No 70 >1nkv_A Hypothetical protein YJHP; structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 2.90A {Escherichia coli} SCOP: c.66.1.21 Probab=98.63 E-value=7.3e-08 Score=67.85 Aligned_cols=77 Identities=14% Similarity=0.166 Sum_probs=64.9 Q ss_pred CHHHHHHHHHHCCCCCCCEEEEECCCCCHHHHHHHHCCCCEEEEECCCCCCHHHHHHHHHH--HHCCCCCCHHHHCCCC Q ss_conf 9899999999719899987999758988234677502352599842554303688787532--2001220000000143 Q gi|254780398|r 32 DLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQ--HPNRLEIIQDDALKVD 108 (284) Q Consensus 32 d~~i~~~iv~~~~~~~~~~VlEIGpG~G~LT~~Ll~~~~~~v~aiEiD~~~~~~l~~~~~~--~~~~~~ii~~Dal~~d 108 (284) .+..+..+++.+.+.+++.|||||||.|.++..+++....++++||+++.+++.+++.... ..++++++.+|+.... T Consensus 21 ~~~~~~~l~~~l~l~pg~rVLDiGcG~G~~~~~la~~~~~~v~gvD~s~~~l~~a~~~~~~~gl~~~v~~~~~d~~~~~ 99 (256) T 1nkv_A 21 TEEKYATLGRVLRMKPGTRILDLGSGSGEMLCTWARDHGITGTGIDMSSLFTAQAKRRAEELGVSERVHFIHNDAAGYV 99 (256) T ss_dssp CHHHHHHHHHHTCCCTTCEEEEETCTTCHHHHHHHHHTCCEEEEEESCHHHHHHHHHHHHHTTCTTTEEEEESCCTTCC T ss_pred CHHHHHHHHHHCCCCCCCEEEEECCCCCHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHHHCCCCCCCCCCCCHHHCC T ss_conf 8999999999708999999999858888899999986499899998983677899886776065544441136364505 No 71 >1y8c_A S-adenosylmethionine-dependent methyltransferase; structural genomics, protein structure initiative, PSI, nysgxrc; 2.50A {Clostridium acetobutylicum atcc 824} SCOP: c.66.1.43 Probab=98.62 E-value=9.3e-08 Score=67.22 Aligned_cols=77 Identities=14% Similarity=0.142 Sum_probs=60.3 Q ss_pred HHHHHHHHHCC--CCCCCEEEEECCCCCHHHHHHHHCCCCEEEEECCCCCCHHHHHHHHHHHHCCCCCCHHHHCCCCHHH Q ss_conf 99999999719--8999879997589882346775023525998425543036887875322001220000000143155 Q gi|254780398|r 34 NILKKIAESSG--SLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEK 111 (284) Q Consensus 34 ~i~~~iv~~~~--~~~~~~VlEIGpG~G~LT~~Ll~~~~~~v~aiEiD~~~~~~l~~~~~~~~~~~~ii~~Dal~~d~~~ 111 (284) ..++.+.+.+. ...+..|||+|||+|.+|..|++.++ +|++||.++.+++.+++.......+++++++|+..+++++ T Consensus 22 ~~~~~~~~~~~~~~~~~~~iLDlGCGtG~~~~~l~~~g~-~v~gvD~S~~ml~~a~~~~~~~~~~~~~~~~d~~~~~~~~ 100 (246) T 1y8c_A 22 KWSDFIIEKCVENNLVFDDYLDLACGTGNLTENLCPKFK-NTWAVDLSQEMLSEAENKFRSQGLKPRLACQDISNLNINR 100 (246) T ss_dssp HHHHHHHHHHHTTTCCTTEEEEETCTTSTTHHHHGGGSS-EEEEECSCHHHHHHHHHHHHHTTCCCEEECCCGGGCCCSC T ss_pred HHHHHHHHHHHHHCCCCCEEEEEECCCCHHHHHHHHCCC-EEEEEECCHHHHHHHHHHCCCCCCCCCCCCCCHHHHHCCC T ss_conf 999999999997389989299980746299999997499-5999967499999876311223443222346677751033 No 72 >1ve3_A Hypothetical protein PH0226; dimer, riken structural genomics/proteomics initiative, RSGI, structural genomics, unknown function, NPPSFA; HET: SAM; 2.10A {Pyrococcus horikoshii} SCOP: c.66.1.43 Probab=98.61 E-value=6.9e-08 Score=68.02 Aligned_cols=65 Identities=20% Similarity=0.372 Sum_probs=55.6 Q ss_pred CCCCCEEEEECCCCCHHHHHHHHCCCCEEEEECCCCCCHHHHHHHHHHHHCCCCCCHHHHCCCCHH Q ss_conf 899987999758988234677502352599842554303688787532200122000000014315 Q gi|254780398|r 45 SLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFE 110 (284) Q Consensus 45 ~~~~~~VlEIGpG~G~LT~~Ll~~~~~~v~aiEiD~~~~~~l~~~~~~~~~~~~ii~~Dal~~d~~ 110 (284) +.++..|||||||+|.+|..+++.++ +|+++++.+.+++.+++.......++..+++|+.+++++ T Consensus 36 ~~~~~rVLDiGCG~G~~~~~la~~~~-~v~g~D~s~~~l~~ak~~~~~~~~~~~~~~~d~~~l~~~ 100 (227) T 1ve3_A 36 MKKRGKVLDLACGVGGFSFLLEDYGF-EVVGVDISEDMIRKAREYAKSRESNVEFIVGDARKLSFE 100 (227) T ss_dssp CCSCCEEEEETCTTSHHHHHHHHTTC-EEEEEESCHHHHHHHHHHHHHTTCCCEEEECCTTSCCSC T ss_pred CCCCCEEEEECCCCCHHHHHHHHCCC-EEEEEECCCHHHHHHHHHHHHCCCCCCCCCCCCCCCCCC T ss_conf 79989799986888899999996599-899996750468999998875276533334653348876 No 73 >1g6q_1 HnRNP arginine N-methyltransferase; SAM-binding domain, beta-barrel, mixed alpha-beta, hexamer, dimer; 2.90A {Saccharomyces cerevisiae} SCOP: c.66.1.6 Probab=98.59 E-value=8.2e-08 Score=67.56 Aligned_cols=94 Identities=17% Similarity=0.257 Sum_probs=65.4 Q ss_pred CCCHHHHHH----HHHHCCCCCCCEEEEECCCCCHHHHHHHHCCCCEEEEECCCCCCHHHHHHHHHH--HHCCCCCCHHH Q ss_conf 239899999----999719899987999758988234677502352599842554303688787532--20012200000 Q gi|254780398|r 30 LLDLNILKK----IAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQ--HPNRLEIIQDD 103 (284) Q Consensus 30 L~d~~i~~~----iv~~~~~~~~~~VlEIGpG~G~LT~~Ll~~~~~~v~aiEiD~~~~~~l~~~~~~--~~~~~~ii~~D 103 (284) |.|..-.+. |.+.+...+++.||+||+|+|.|+..+++.++++|+++|.++ ++..+++.... ..++++++++| T Consensus 17 l~D~~r~~~y~~aI~~~~~~~~~~~VLDiGcGtG~ls~~aa~~Ga~~V~a~d~s~-~~~~a~~~~~~~~~~~~i~~i~~~ 95 (328) T 1g6q_1 17 LQDTVRTLSYRNAIIQNKDLFKDKIVLDVGCGTGILSMFAAKHGAKHVIGVDMSS-IIEMAKELVELNGFSDKITLLRGK 95 (328) T ss_dssp HTCHHHHHHHHHHHHHHHHHHTTCEEEEETCTTSHHHHHHHHTCCSEEEEEESST-HHHHHHHHHHHTTCTTTEEEEESC T ss_pred HCCHHHHHHHHHHHHHCCCCCCCCEEEEECCCCCHHHHHHHHCCCCEEEEEECHH-HHHHHHHHHHHCCCCCEEEEEEEE T ss_conf 5876779999999985510069799999789977999999971999899995979-999999999873876238999712 Q ss_pred HCCCCHHHHCCCCCCEEEEECCCHH Q ss_conf 0014315521332220112023224 Q gi|254780398|r 104 ALKVDFEKFFNISSPIRIIANLPYN 128 (284) Q Consensus 104 al~~d~~~~~~~~~~~~vvgNLPYn 128 (284) +.++.+.. ...-.|++++..+ T Consensus 96 ~~~~~~~~----~~~D~vvse~~~~ 116 (328) T 1g6q_1 96 LEDVHLPF----PKVDIIISEWMGY 116 (328) T ss_dssp TTTSCCSS----SCEEEEEECCCBT T ss_pred EECCCCCC----CCCCEEEEEECCE T ss_conf 10055776----6642999973320 No 74 >2ar0_A M.ecoki, type I restriction enzyme ecoki M protein; structural genomics, protein structure initiative, nysgxrc; 2.80A {Escherichia coli} SCOP: c.66.1.45 Probab=98.58 E-value=1.2e-06 Score=60.20 Aligned_cols=188 Identities=13% Similarity=0.078 Sum_probs=109.0 Q ss_pred HHHHCCCCCCCCCCCCCCCCHHHHHHHHHHCCCCCCCEEEEECCCCCHHHHHHHHC----C---------------CCEE Q ss_conf 99981898433658411239899999999719899987999758988234677502----3---------------5259 Q gi|254780398|r 13 ILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTL----G---------------ARKV 73 (284) Q Consensus 13 ll~~~~~~p~k~lGQnFL~d~~i~~~iv~~~~~~~~~~VlEIGpG~G~LT~~Ll~~----~---------------~~~v 73 (284) ++.++.-..+++.||.| +-+.+++-||+.+.+.+++.|++-.||.|.+.....+. . ...+ T Consensus 136 ll~~~a~~~~k~~Gqff-TP~~Iv~~mv~ll~p~~~~~I~DPacGsG~fL~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~ 214 (541) T 2ar0_A 136 LLQKNANETKSGAGQYF-TPRPLIKTIIHLLKPQPREVVQDPAAGTAGFLIEADRYVKSQTNDLDDLDGDTQDFQIHRAF 214 (541) T ss_dssp --------------CCC-CCHHHHHHHHHHHCCCTTCCEEETTCTTTHHHHHHHHHHHTTTTTTTTSCHHHHHHHHHTSE T ss_pred HHHHHHHHHCCCCCEEC-CCHHHHHHHHHHHCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHH T ss_conf 99999876177587567-98999999998628998873046577856057999999998436621110467888887666 Q ss_pred EEECCCCCCHHHHHHHHHHHHCCCCCCHHHHCCCCHH---HHCCCCCCEEEEECCCHHHH-----------------HHH Q ss_conf 9842554303688787532200122000000014315---52133222011202322467-----------------889 Q gi|254780398|r 74 IVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFE---KFFNISSPIRIIANLPYNIG-----------------TRL 133 (284) Q Consensus 74 ~aiEiD~~~~~~l~~~~~~~~~~~~ii~~Dal~~d~~---~~~~~~~~~~vvgNLPYnIs-----------------s~I 133 (284) ..+|+|+..+..++-.+--+.....+.++|.+..... +......--.|+||.||+.. ..+ T Consensus 215 ~G~E~~~~~~~la~~nl~l~g~~~~~~~~~~~~~~~~l~~d~~~~~~fD~Vl~NPPfg~~~~~~~~~~~~~~~~~~~~~F 294 (541) T 2ar0_A 215 IGLELVPGTRRLALMNCLLHDIEGNLDHGGAIRLGNTLGSDGENLPKAHIVATNPPFGSAAGTNITRTFVHPTSNKQLCF 294 (541) T ss_dssp EEEESCHHHHHHHHHHHHTTTCCCBGGGTBSEEESCTTSHHHHTSCCEEEEEECCCCTTCSSCCCCSCCSSCCSCHHHHH T ss_pred HHHHCCHHHHHHHHHHHHHCCCCCCCCCCCCHHCCCCHHHCCCCCCCCCEEEECCCCCCCCCCCCCCCCCCCCCCHHHHH T ss_conf 30206699999998646634563011347502104504330444434666873699766444343000257655277999 Q ss_pred HHHHHHHHCCCCCCCHHHHEEEHHHHHHHHHCCCHHHHHHHHHHHCCCCCEEEECCCCCCEECCCCCCCEEEEEECCC Q ss_conf 999985201000000110203344788753012312332345432013320120001100001057875788730125 Q gi|254780398|r 134 LFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFPSPKVTSTVIHFIPH 211 (284) Q Consensus 134 l~~ll~~~~~~~~~~~~vlmvQkEvA~Rl~a~pg~k~Yg~LSv~~q~~~~v~~~~~V~~~~F~P~PkVdS~vi~l~pk 211 (284) +.+.+... .+. .+.+ +.+-.-+ .-.-+ .+..+--..--.+.++.+...|.+.|++ -.|.++|+-|+++ T Consensus 295 i~~~l~~L-k~~-Gr~a-iIlP~~~----Lf~~~--~~~~iR~~Lle~~~l~aII~LP~~~F~~-t~v~t~Il~l~K~ 362 (541) T 2ar0_A 295 MQHIIETL-HPG-GRAA-VVVPDNV----LFEGG--KGTDIRRDLMDKCHLHTILRLPTGIFYA-QGVKTNVLFFTKG 362 (541) T ss_dssp HHHHHHHE-EEE-EEEE-EEEEHHH----HHCCT--HHHHHHHHHHHHEEEEEEEECCSSCSSS-CSCCEEEEEEEEB T ss_pred HHHHHHHC-CCC-CEEE-EEECCCH----HHCCH--HHHHHHHHHHHCCEEEEEEECCCCCCCC-CCCCEEEEEEECC T ss_conf 99999973-789-7699-9956820----10100--0079999998629189999787044789-9997699999899 No 75 >3hnr_A Probable methyltransferase BT9727_4108; structural genomics, PSI-2, protein structure initiative; 2.80A {Bacillus thuringiensis serovarkonkukian} Probab=98.57 E-value=5.7e-08 Score=68.53 Aligned_cols=72 Identities=31% Similarity=0.360 Sum_probs=57.6 Q ss_pred HHHHHHCCCCCCCEEEEECCCCCHHHHHHHHCCCCEEEEECCCCCCHHHHHHHHHHHHCCCCCCHHHHCCCCHHHH Q ss_conf 9999971989998799975898823467750235259984255430368878753220012200000001431552 Q gi|254780398|r 37 KKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKF 112 (284) Q Consensus 37 ~~iv~~~~~~~~~~VlEIGpG~G~LT~~Ll~~~~~~v~aiEiD~~~~~~l~~~~~~~~~~~~ii~~Dal~~d~~~~ 112 (284) +.+++.+...++..|||||||+|.++..+++.+ .+++++|+.+.+++.+++++. ++++++++|+..+++++- T Consensus 35 ~~~l~~~~~~~~~~vLDiGcG~G~~~~~l~~~~-~~v~gvD~S~~mi~~a~~k~~---~~~~~~~~d~~~~~~~~~ 106 (220) T 3hnr_A 35 EDILEDVVNKSFGNVLEFGVGTGNLTNKLLLAG-RTVYGIEPSREMRMIAKEKLP---KEFSITEGDFLSFEVPTS 106 (220) T ss_dssp HHHHHHHHHTCCSEEEEECCTTSHHHHHHHHTT-CEEEEECSCHHHHHHHHHHSC---TTCCEESCCSSSCCCCSC T ss_pred HHHHHHHHCCCCCEEEEECCCCCHHHHHHHHCC-CEEEEEECCHHHHHHHHHCCC---CCCHHHHHHHHHHCCCCC T ss_conf 999998426697939997287859999999779-989999583577899874256---541033444544401776 No 76 >3grz_A L11 mtase, ribosomal protein L11 methyltransferase; methylase, SAM-binding domain, PSI-2, NYSGXRC, structural genomics; 2.00A {Lactobacillus delbrueckii subsp} Probab=98.57 E-value=1e-07 Score=66.91 Aligned_cols=83 Identities=19% Similarity=0.262 Sum_probs=59.5 Q ss_pred CCCCCEEEEECCCCCHHHHHHHHCCCCEEEEECCCCCCHHHHHHHHHHHH-CCCCCCHHHHCCCCHHHHCCCCCCEEEEE Q ss_conf 89998799975898823467750235259984255430368878753220-01220000000143155213322201120 Q gi|254780398|r 45 SLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQHP-NRLEIIQDDALKVDFEKFFNISSPIRIIA 123 (284) Q Consensus 45 ~~~~~~VlEIGpG~G~LT~~Ll~~~~~~v~aiEiD~~~~~~l~~~~~~~~-~~~~ii~~Dal~~d~~~~~~~~~~~~vvg 123 (284) +.++..|||+|||.|.++..+++.++.+|+++|+|+..++.++++...+. ..+....+|.+.. .. +.--.|++ T Consensus 58 ~~~~~~VLDlGcGsG~~~~~~ak~g~~~V~~iDis~~al~~A~~N~~~n~~~~~~~~~~~~~~~-~~-----~~fD~Iva 131 (205) T 3grz_A 58 MVKPLTVADVGTGSGILAIAAHKLGAKSVLATDISDESMTAAEENAALNGIYDIALQKTSLLAD-VD-----GKFDLIVA 131 (205) T ss_dssp CSSCCEEEEETCTTSHHHHHHHHTTCSEEEEEESCHHHHHHHHHHHHHTTCCCCEEEESSTTTT-CC-----SCEEEEEE T ss_pred CCCCCEEEEEECCHHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHCCCCCEEEEECCHHHC-CC-----CCCCEEEE T ss_conf 7995999999526229999998759968999989899999999999973766768873434440-45-----55689998 Q ss_pred CCCHHHHHHH Q ss_conf 2322467889 Q gi|254780398|r 124 NLPYNIGTRL 133 (284) Q Consensus 124 NLPYnIss~I 133 (284) |+++..--.+ T Consensus 132 ni~~~~l~~l 141 (205) T 3grz_A 132 NILAEILLDL 141 (205) T ss_dssp ESCHHHHHHH T ss_pred CCCHHHHHHH T ss_conf 5878899999 No 77 >3a27_A TYW2, uncharacterized protein MJ1557; wybutosine modification, transferase; HET: SAM; 2.00A {Methanocaldococcus jannaschii} Probab=98.57 E-value=5.5e-08 Score=68.61 Aligned_cols=108 Identities=24% Similarity=0.237 Sum_probs=74.8 Q ss_pred CCCCCCCCCCH-------H-HHH--HHHHHCCCCCCCEEEEECCCCCHHHHHHHHC-CCCEEEEECCCCCCHHHHHHHHH Q ss_conf 36584112398-------9-999--9999719899987999758988234677502-35259984255430368878753 Q gi|254780398|r 23 KYMGQNFLLDL-------N-ILK--KIAESSGSLDGITVIEIGAGPGNLTQMLLTL-GARKVIVIEKDQQFFPILKDISS 91 (284) Q Consensus 23 k~lGQnFL~d~-------~-i~~--~iv~~~~~~~~~~VlEIGpG~G~LT~~Ll~~-~~~~v~aiEiD~~~~~~l~~~~~ 91 (284) |.-|-.|.+|. + ..+ ++++. +.+++.||++|+|.|.+|..+++. ++..|+|+|+++..++.++++.. T Consensus 87 ~E~g~~f~~D~~kvyfs~r~~~Er~ri~~~--v~~ge~VlDl~aG~G~~~i~~ak~~~~~~V~aiDinp~av~~l~~N~~ 164 (272) T 3a27_A 87 KEYGCLFKLDVAKIMWSQGNIEERKRMAFI--SNENEVVVDMFAGIGYFTIPLAKYSKPKLVYAIEKNPTAYHYLCENIK 164 (272) T ss_dssp EETTEEEEEETTTSCCCGGGHHHHHHHHTS--CCTTCEEEETTCTTTTTHHHHHHHTCCSEEEEEECCHHHHHHHHHHHH T ss_pred EECCEEEEEECCEEEECCCCHHHHHHHHHC--CCCCCEEEEECCCCCHHHHHHHHCCCCEEEEEEECCHHHHHHHHHHHH T ss_conf 989989998154479889877999998734--589999999378658899998750695099999599999999999999 Q ss_pred HHH-CCCCCCHHHHCCCCHHHHCCCCCCEEEEECCCHHHHHHHHHHHH Q ss_conf 220-01220000000143155213322201120232246788999998 Q gi|254780398|r 92 QHP-NRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWI 138 (284) Q Consensus 92 ~~~-~~~~ii~~Dal~~d~~~~~~~~~~~~vvgNLPYnIss~Il~~ll 138 (284) .+. .+...+++|+.++.+..-+ -+|+-|+|+.- .+.+...+ T Consensus 165 ~N~v~n~~~i~~D~r~~~~~~~f-----D~Vimn~p~~s-~~fl~~a~ 206 (272) T 3a27_A 165 LNKLNNVIPILADNRDVELKDVA-----DRVIMGYVHKT-HKFLDKTF 206 (272) T ss_dssp HTTCSSEEEEESCGGGCCCTTCE-----EEEEECCCSSG-GGGHHHHH T ss_pred HCCCCCEEEEECCCCCCCCCCCC-----CEEEECCCCCH-HHHHHHHH T ss_conf 84999759992776534557888-----89997895127-99999999 No 78 >2pjd_A Ribosomal RNA small subunit methyltransferase C; gene duplication, RNA modification, SAM binding; 2.10A {Escherichia coli} Probab=98.56 E-value=3.9e-08 Score=69.54 Aligned_cols=102 Identities=13% Similarity=0.167 Sum_probs=74.6 Q ss_pred CCHHHHHHHHHHCCCCCCCEEEEECCCCCHHHHHHHHCCCC-EEEEECCCCCCHHHHHHHHHHHHCCCCCCHHHHCCCCH Q ss_conf 39899999999719899987999758988234677502352-59984255430368878753220012200000001431 Q gi|254780398|r 31 LDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGAR-KVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDF 109 (284) Q Consensus 31 ~d~~i~~~iv~~~~~~~~~~VlEIGpG~G~LT~~Ll~~~~~-~v~aiEiD~~~~~~l~~~~~~~~~~~~ii~~Dal~~d~ 109 (284) +|.. .+-+.+++....+..|||+|||.|.++..++++++. +|+++|+++..++.+++....+.-..+++.+|.+.. . T Consensus 181 lD~g-t~lLl~~l~~~~~~~VLDlGcG~G~l~~~la~~~p~~~v~~vD~s~~al~~ar~n~~~n~l~~~~~~~d~~~~-~ 258 (343) T 2pjd_A 181 LDVG-SQLLLSTLTPHTKGKVLDVGCGAGVLSVAFARHSPKIRLTLCDVSAPAVEASRATLAANGVEGEVFASNVFSE-V 258 (343) T ss_dssp CCHH-HHHHHHHSCTTCCSBCCBTTCTTSHHHHHHHHHCTTCBCEEEESBHHHHHHHHHHHHHTTCCCEEEECSTTTT-C T ss_pred CCHH-HHHHHHHCCCCCCCEEEEECCCCCHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHCCCCEEEEECCCHHC-C T ss_conf 6999-9999985650589829993252779999999978997899998999999999999998499379996440122-6 Q ss_pred HHHCCCCCCEEEEECCCHHH----HHHHHHHHHH Q ss_conf 55213322201120232246----7889999985 Q gi|254780398|r 110 EKFFNISSPIRIIANLPYNI----GTRLLFNWIS 139 (284) Q Consensus 110 ~~~~~~~~~~~vvgNLPYnI----ss~Il~~ll~ 139 (284) +. .--.|+.|.||+. ...+...++. T Consensus 259 ~~-----~fD~Iv~NpPfh~g~~~~~~~~~~~i~ 287 (343) T 2pjd_A 259 KG-----RFDMIISNPPFHDGMQTSLDAAQTLIR 287 (343) T ss_dssp CS-----CEEEEEECCCCCSSSHHHHHHHHHHHH T ss_pred CC-----CCCEEEECCCCCCCCCCCHHHHHHHHH T ss_conf 65-----545899887501144468899999999 No 79 >2pxx_A Uncharacterized protein MGC2408; structural genomics consortium, SGC, methyltransferase, LOC84291, transferase; HET: SAH; 1.30A {Homo sapiens} Probab=98.56 E-value=4.4e-08 Score=69.24 Aligned_cols=79 Identities=18% Similarity=0.243 Sum_probs=60.8 Q ss_pred CCHHHHHHHHHHCCCCCCCEEEEECCCCCHHHHHHHHCCCCEEEEECCCCCCHHHHHHHHHHHHCCCCCCHHHHCCCCHH Q ss_conf 39899999999719899987999758988234677502352599842554303688787532200122000000014315 Q gi|254780398|r 31 LDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFE 110 (284) Q Consensus 31 ~d~~i~~~iv~~~~~~~~~~VlEIGpG~G~LT~~Ll~~~~~~v~aiEiD~~~~~~l~~~~~~~~~~~~ii~~Dal~~d~~ 110 (284) .+-.-+..++.. .+.++..|||||||+|.+|..|++.+..+|++|++++.+++.+++.....+ +++++.+|+.+++++ T Consensus 27 ~~~~~l~~~~~~-~l~~~~~iLDiGCG~G~~~~~L~~~g~~~v~giD~s~~~i~~~~~~~~~~~-~~~~~~~D~~~l~~~ 104 (215) T 2pxx_A 27 GDFSSFRALLEP-ELRPEDRILVLGCGNSALSYELFLGGFPNVTSVDYSSVVVAAMQACYAHVP-QLRWETMDVRKLDFP 104 (215) T ss_dssp CCHHHHHHHHGG-GCCTTCCEEEETCTTCSHHHHHHHTTCCCEEEEESCHHHHHHHHHHTTTCT-TCEEEECCTTSCCSC T ss_pred CCHHHHHHHHHH-HCCCCCEEEEECCCCCHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHCCCC-EEEEECCCCCCCCCC T ss_conf 587899999996-389999899963777799999998489839998276256679999834786-354321454457789 Q ss_pred H Q ss_conf 5 Q gi|254780398|r 111 K 111 (284) Q Consensus 111 ~ 111 (284) + T Consensus 105 ~ 105 (215) T 2pxx_A 105 S 105 (215) T ss_dssp S T ss_pred C T ss_conf 9 No 80 >1zx0_A Guanidinoacetate N-methyltransferase; structural genomics, structural genomics consortium; HET: SAH; 1.86A {Homo sapiens} SCOP: c.66.1.16 PDB: 3orh_A* 1xcj_A* 1xcl_A* 1p1c_A* 1p1b_A* 1khh_A* Probab=98.56 E-value=9e-08 Score=67.29 Aligned_cols=73 Identities=16% Similarity=0.220 Sum_probs=59.5 Q ss_pred HHHHHHHHCCCCCCCEEEEECCCCCHHHHHHHHCCCCEEEEECCCCCCHHHHHHHHHHHHCCCCCCHHHHCCCC Q ss_conf 99999997198999879997589882346775023525998425543036887875322001220000000143 Q gi|254780398|r 35 ILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVD 108 (284) Q Consensus 35 i~~~iv~~~~~~~~~~VlEIGpG~G~LT~~Ll~~~~~~v~aiEiD~~~~~~l~~~~~~~~~~~~ii~~Dal~~d 108 (284) +.+..++.+. .++..|||||+|+|..+..++++++.++++||+++.+++.+++.+...++++.++.+|+.... T Consensus 49 ~~~~l~~~~~-~~g~rVLeiG~G~G~~a~~la~~~~~~vt~id~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~ 121 (236) T 1zx0_A 49 YMHALAAAAS-SKGGRVLEVGFGMAIAASKVQEAPIDEHWIIECNDGVFQRLRDWAPRQTHKVIPLKGLWEDVA 121 (236) T ss_dssp HHHHHHHHHT-TTCEEEEEECCTTSHHHHHHHTSCEEEEEEEECCHHHHHHHHHHGGGCSSEEEEEESCHHHHG T ss_pred HHHHHHHHHC-CCCCEEEEECCCCCHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHCCCCCCEEECHHHHHH T ss_conf 9999997534-489849998888509999999729977999808989999999988755886202320088762 No 81 >1i1n_A Protein-L-isoaspartate O-methyltransferase; S-adenosyl homocysteine, protein repair; HET: SAH; 1.50A {Homo sapiens} SCOP: c.66.1.7 PDB: 1kr5_A* Probab=98.54 E-value=2.1e-07 Score=64.96 Aligned_cols=83 Identities=17% Similarity=0.205 Sum_probs=65.9 Q ss_pred CCCCCCCHHHHHHHHHHC--CCCCCCEEEEECCCCCHHHHHHHHC-C-CCEEEEECCCCCCHHHHHHHHHHHH------C Q ss_conf 841123989999999971--9899987999758988234677502-3-5259984255430368878753220------0 Q gi|254780398|r 26 GQNFLLDLNILKKIAESS--GSLDGITVIEIGAGPGNLTQMLLTL-G-ARKVIVIEKDQQFFPILKDISSQHP------N 95 (284) Q Consensus 26 GQnFL~d~~i~~~iv~~~--~~~~~~~VlEIGpG~G~LT~~Ll~~-~-~~~v~aiEiD~~~~~~l~~~~~~~~------~ 95 (284) || ++..+.+..++.+.+ ++.+++.|||||+|.|.+|..|++. + ...|++||+++.+++..++.+.... . T Consensus 55 ~~-~is~P~~~a~~le~L~~~~~pg~~VLdiG~GsGy~ta~la~lvg~~g~V~~iE~~~~l~~~a~~~l~~~~~~~~~~~ 133 (226) T 1i1n_A 55 QA-TISAPHMHAYALELLFDQLHEGAKALDVGSGSGILTACFARMVGCTGKVIGIDHIKELVDDSVNNVRKDDPTLLSSG 133 (226) T ss_dssp TE-EECCHHHHHHHHHHTTTTSCTTCEEEEETCTTSHHHHHHHHHHCTTCEEEEEESCHHHHHHHHHHHHHHCTHHHHTS T ss_pred CC-EECHHHHHHHHHHHHHHHCCCCCEEEEECCCCCHHHHHHHHHCCCCCEEEEECCCHHHHHHHHHHHHHCCCCCCEEE T ss_conf 97-75588999999997253089999899977888999999999708886499986889999999999865486431023 Q ss_pred CCCCCHHHHCCCCH Q ss_conf 12200000001431 Q gi|254780398|r 96 RLEIIQDDALKVDF 109 (284) Q Consensus 96 ~~~ii~~Dal~~d~ 109 (284) +++++.+|+..-.. T Consensus 134 ~~~~~~gd~~~~~~ 147 (226) T 1i1n_A 134 RVQLVVGDGRMGYA 147 (226) T ss_dssp SEEEEESCGGGCCG T ss_pred EEEEEECCCCCCCC T ss_conf 46799656456665 No 82 >3bus_A REBM, methyltransferase; rebeccamycin synthesis; HET: SAH; 2.65A {Lechevalieria aerocolonigenes} Probab=98.54 E-value=1.9e-07 Score=65.33 Aligned_cols=78 Identities=19% Similarity=0.226 Sum_probs=62.8 Q ss_pred HHHHHHHHHHCCCCCCCEEEEECCCCCHHHHHHHHCCCCEEEEECCCCCCHHHHHHHHHHH--HCCCCCCHHHHCCCCHH Q ss_conf 8999999997198999879997589882346775023525998425543036887875322--00122000000014315 Q gi|254780398|r 33 LNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQH--PNRLEIIQDDALKVDFE 110 (284) Q Consensus 33 ~~i~~~iv~~~~~~~~~~VlEIGpG~G~LT~~Ll~~~~~~v~aiEiD~~~~~~l~~~~~~~--~~~~~ii~~Dal~~d~~ 110 (284) .+.++++++.+++.+++.|||||||+|.+|..+++....+|+++++.+.++...++..... ..++.+..+|+....++ T Consensus 47 ~~~~~~l~~~~~l~~g~~VLDiGcG~G~~~~~~~~~~~~~v~gvD~s~~~~~~~~~~~~~~~~~~~~~~~~~d~~~l~~~ 126 (273) T 3bus_A 47 DRLTDEMIALLDVRSGDRVLDVGCGIGKPAVRLATARDVRVTGISISRPQVNQANARATAAGLANRVTFSYADAMDLPFE 126 (273) T ss_dssp HHHHHHHHHHSCCCTTCEEEEESCTTSHHHHHHHHHSCCEEEEEESCHHHHHHHHHHHHHTTCTTTEEEEECCTTSCCSC T ss_pred HHHHHHHHHHCCCCCCCEEEEECCCCCHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHHHCCCCEEECCCCCCCCCCCC T ss_conf 99999999866989979899978979988999998459889999784888999999998717773210013443468877 No 83 >3dh0_A SAM dependent methyltransferase; cystal structure, PSI-2, NYSGXRC, structural genomics, protein structure initiative; HET: SAM; 2.72A {Aquifex aeolicus} Probab=98.53 E-value=1.1e-07 Score=66.76 Aligned_cols=74 Identities=19% Similarity=0.364 Sum_probs=61.1 Q ss_pred HHHHHHCCCCCCCEEEEECCCCCHHHHHHHHCC-C-CEEEEECCCCCCHHHHHHHHHHHH-CCCCCCHHHHCCCCHH Q ss_conf 999997198999879997589882346775023-5-259984255430368878753220-0122000000014315 Q gi|254780398|r 37 KKIAESSGSLDGITVIEIGAGPGNLTQMLLTLG-A-RKVIVIEKDQQFFPILKDISSQHP-NRLEIIQDDALKVDFE 110 (284) Q Consensus 37 ~~iv~~~~~~~~~~VlEIGpG~G~LT~~Ll~~~-~-~~v~aiEiD~~~~~~l~~~~~~~~-~~~~ii~~Dal~~d~~ 110 (284) +++++.+++.++++|||||||.|..|..+++.. + .+|+++|+.+.+++.++++..... .+++++.+|+.+.+++ T Consensus 27 ~~~l~~~~l~~g~~VLDiGcG~G~~~~~la~~~~~~~~v~giD~s~~~i~~a~~~~~~~~~~~v~~~~~d~~~lp~~ 103 (219) T 3dh0_A 27 EKVLKEFGLKEGMTVLDVGTGAGFYLPYLSKMVGEKGKVYAIDVQEEMVNYAWEKVNKLGLKNVEVLKSEENKIPLP 103 (219) T ss_dssp HHHHHHHTCCTTCEEEESSCTTCTTHHHHHHHHTTTCEEEEEESCHHHHHHHHHHHHHHTCTTEEEEECBTTBCSSC T ss_pred HHHHHHCCCCCCCEEEEECCCCCHHHHHHHHHCCCCEEEEEEEEHHHHHHHHHHHHHHHHCCEEHHHHHHHHCCCCC T ss_conf 99998659899399999878888779999975089839999850037788999976764022100100033327755 No 84 >1nv8_A HEMK protein; class I adoMet-dependent methyltransferase; HET: SAM MEQ; 2.20A {Thermotoga maritima} SCOP: c.66.1.30 PDB: 1nv9_A* 1vq1_A* 1sg9_A* Probab=98.53 E-value=1.6e-07 Score=65.71 Aligned_cols=105 Identities=23% Similarity=0.339 Sum_probs=74.9 Q ss_pred CCCCCCCCCHHH----------HHHHHHHCCCCCCCEEEEECCCCCHHHHHHHHCCCCEEEEECCCCCCHHHHHHHHHHH Q ss_conf 658411239899----------9999997198999879997589882346775023525998425543036887875322 Q gi|254780398|r 24 YMGQNFLLDLNI----------LKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQH 93 (284) Q Consensus 24 ~lGQnFL~d~~i----------~~~iv~~~~~~~~~~VlEIGpG~G~LT~~Ll~~~~~~v~aiEiD~~~~~~l~~~~~~~ 93 (284) =+|-.|.+|+++ ++.+.+.........|+|+|+|.|++...+++.....|+++|+++..+..++++...+ T Consensus 90 F~g~~f~V~~~VLIPRpeTE~Lve~~~~~~~~~~~~~vlDlgtGSG~I~isla~~p~~~V~avDiS~~Al~vA~~Na~~~ 169 (284) T 1nv8_A 90 FMGLSFLVEEGVFVPRPETEELVELALELIRKYGIKTVADIGTGSGAIGVSVAKFSDAIVFATDVSSKAVEIARKNAERH 169 (284) T ss_dssp ETTEEEECCTTSCCCCTTHHHHHHHHHHHHHHHTCCEEEEESCTTSHHHHHHHHHSSCEEEEEESCHHHHHHHHHHHHHT T ss_pred ECCEEEEEECCCCCCCCHHHHHHHHHHHHHHCCCCCEEEEEECCHHHHHHHHHHHHCCCEEEECCCHHHHHHHHHHHHHC T ss_conf 96838998166412887589999988876503788679986046059887676520145167639799999999999844 Q ss_pred --HCCCCCCHHHHCCCCHHHHCCCCCCEEEEECCCHHHHH Q ss_conf --00122000000014315521332220112023224678 Q gi|254780398|r 94 --PNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGT 131 (284) Q Consensus 94 --~~~~~ii~~Dal~~d~~~~~~~~~~~~vvgNLPYnIss 131 (284) .+++.++++|.+....... +.---||+|.||==++ T Consensus 170 ~~~~~~~~~~~d~~~~~~~~~---~~fDlIVSNPPYI~~~ 206 (284) T 1nv8_A 170 GVSDRFFVRKGEFLEPFKEKF---ASIEMILSNPPYVKSS 206 (284) T ss_dssp TCTTSEEEEESSTTGGGGGGT---TTCCEEEECCCCBCGG T ss_pred CCCCEEEEEECCCCCCCCCCC---CCEEEEEECCCCCCCH T ss_conf 898629999632100141126---7530899678888863 No 85 >3dmg_A Probable ribosomal RNA small subunit methyltransferase; monomethyltranserase, 16S rRNA methyltransferase, N2 G1207 methyltransferase; HET: SAH; 1.55A {Thermus thermophilus} PDB: 3dmf_A* 3dmh_A* 2zul_A* 2zwv_A* Probab=98.52 E-value=2.1e-07 Score=65.03 Aligned_cols=90 Identities=26% Similarity=0.351 Sum_probs=65.0 Q ss_pred HHHHHHHC--CCCCCCEEEEECCCCCHHHHHHHHCCCCEEEEECCCCCCHHHHHHHHHHHHCCCCCCHHHHCCCCHHHHC Q ss_conf 99999971--9899987999758988234677502352599842554303688787532200122000000014315521 Q gi|254780398|r 36 LKKIAESS--GSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFF 113 (284) Q Consensus 36 ~~~iv~~~--~~~~~~~VlEIGpG~G~LT~~Ll~~~~~~v~aiEiD~~~~~~l~~~~~~~~~~~~ii~~Dal~~d~~~~~ 113 (284) ++.+.... ...+++.|||+|||.|.++..+++.++ +++++|+|+.+++.+++......-+.+++.+|+.....+ T Consensus 220 l~~l~~~~~~~~~~g~~VLDlGcG~G~~~~~la~~~~-~v~~vD~s~~~l~~a~~~~~~~~~~~~~~~~d~~~~~~~--- 295 (381) T 3dmg_A 220 LEALQERLGPEGVRGRQVLDLGAGYGALTLPLARMGA-EVVGVEDDLASVLSLQKGLEANALKAQALHSDVDEALTE--- 295 (381) T ss_dssp HHHHHHHHCTTTTTTCEEEEETCTTSTTHHHHHHTTC-EEEEEESBHHHHHHHHHHHHHTTCCCEEEECSTTTTSCT--- T ss_pred HHHHHHHHCCCCCCCCEEEEEEEECCHHHHHHHHCCC-EEECCCCCHHHHHHHHHHHHHCCCCEEEEECCCCCCCCC--- T ss_conf 9987875266689999899996010488897675198-874146999999999999998299738853010014466--- Q ss_pred CCCCCEEEEECCCHHHH Q ss_conf 33222011202322467 Q gi|254780398|r 114 NISSPIRIIANLPYNIG 130 (284) Q Consensus 114 ~~~~~~~vvgNLPYnIs 130 (284) .+.--.|++|.||+.. T Consensus 296 -~~~fD~Iv~n~~~h~~ 311 (381) T 3dmg_A 296 -EARFDIIVTNPPFHVG 311 (381) T ss_dssp -TCCEEEEEECCCCCTT T ss_pred -CCCEEEEEECCCHHHC T ss_conf -7986899989324533 No 86 >2p35_A Trans-aconitate 2-methyltransferase; SAM dependent methyltransferase, structural genomics, PSI-2, protein structure initiative; HET: SAH; 1.95A {Agrobacterium tumefaciens str} Probab=98.52 E-value=1.3e-07 Score=66.38 Aligned_cols=85 Identities=18% Similarity=0.206 Sum_probs=63.8 Q ss_pred HHHHHHHHCCCCCCCEEEEECCCCCHHHHHHHHC-CCCEEEEECCCCCCHHHHHHHHHHHHCCCCCCHHHHCCCCHHHHC Q ss_conf 9999999719899987999758988234677502-352599842554303688787532200122000000014315521 Q gi|254780398|r 35 ILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTL-GARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFF 113 (284) Q Consensus 35 i~~~iv~~~~~~~~~~VlEIGpG~G~LT~~Ll~~-~~~~v~aiEiD~~~~~~l~~~~~~~~~~~~ii~~Dal~~d~~~~~ 113 (284) -+...+..+++.++..|||||||+|.+|..|+++ ++.+|+++|+.+.+++.+++.. + ++++..+|+.++.+.+-+ T Consensus 21 ~~~~ll~~~~~~~~~rVLDiGCGtG~~t~~la~~~~~~~v~gvD~S~~ml~~A~~~~---~-~v~~~~~d~~~~~~~~~f 96 (259) T 2p35_A 21 PARDLLAQVPLERVLNGYDLGCGPGNSTELLTDRYGVNVITGIDSDDDMLEKAADRL---P-NTNFGKADLATWKPAQKA 96 (259) T ss_dssp HHHHHHTTCCCSCCSSEEEETCTTTHHHHHHHHHHCTTSEEEEESCHHHHHHHHHHS---T-TSEEEECCTTTCCCSSCE T ss_pred HHHHHHHCCCCCCCCEEEEECCCCCHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHC---C-CCCCEEEEHHHCCCCCCC T ss_conf 999999528888989899981628699999998789987999989879999999725---6-631201424212435455 Q ss_pred CCCCCEEEEECCCHH Q ss_conf 332220112023224 Q gi|254780398|r 114 NISSPIRIIANLPYN 128 (284) Q Consensus 114 ~~~~~~~vvgNLPYn 128 (284) -.|++|.-++ T Consensus 97 -----D~V~s~~~l~ 106 (259) T 2p35_A 97 -----DLLYANAVFQ 106 (259) T ss_dssp -----EEEEEESCGG T ss_pred -----CEECCCCEEE T ss_conf -----5641201577 No 87 >3mgg_A Methyltransferase; NYSGXRC, PSI-II, protein structure initiative, structural genomics, NEW YORK SGX research center for structural genomics; 1.86A {Methanosarcina mazei} Probab=98.48 E-value=1.6e-07 Score=65.75 Aligned_cols=80 Identities=18% Similarity=0.267 Sum_probs=63.9 Q ss_pred CCCCCCHHHHHHHHHHCCCCCCCEEEEECCCCCHHHHHHHHCCCC-EEEEECCCCCCHHHHHHHHHHH-HCCCCCCHHHH Q ss_conf 411239899999999719899987999758988234677502352-5998425543036887875322-00122000000 Q gi|254780398|r 27 QNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGAR-KVIVIEKDQQFFPILKDISSQH-PNRLEIIQDDA 104 (284) Q Consensus 27 QnFL~d~~i~~~iv~~~~~~~~~~VlEIGpG~G~LT~~Ll~~~~~-~v~aiEiD~~~~~~l~~~~~~~-~~~~~ii~~Da 104 (284) |+-+ ..+.+.+.+...+++.|||||||+|.++..|++.++. +|+++|+++.+.+.++...... .++++++.+|+ T Consensus 21 q~~~----~~~~~~~~~~~~pg~rVLDiGcG~G~~~~~la~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~v~~~~~d~ 96 (276) T 3mgg_A 21 QAET----LEKLLHHDTVYPPGAKVLEAGCGIGAQTVILAKNNPDAEITSIDISPESLEKARENTEKNGIKNVKFLQANI 96 (276) T ss_dssp --CH----HHHHHHTTCCCCTTCEEEETTCTTSHHHHHHHHHCTTSEEEEEESCHHHHHHHHHHHHHTTCCSEEEEECCG T ss_pred HHHH----HHHHHHHCCCCCCCCEEEEECCCCCHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHCCCCCCCEEECCH T ss_conf 9999----999987556999999899955858899999998799978999979567632222112211556642153352 Q ss_pred CCCCHH Q ss_conf 014315 Q gi|254780398|r 105 LKVDFE 110 (284) Q Consensus 105 l~~d~~ 110 (284) .+++++ T Consensus 97 ~~l~~~ 102 (276) T 3mgg_A 97 FSLPFE 102 (276) T ss_dssp GGCCSC T ss_pred HHCCCC T ss_conf 320477 No 88 >3bkw_A MLL3908 protein, S-adenosylmethionine dependent methyltransferase; NP_104914.1, methyltransferase domain, structural genomics; HET: MSE; 1.60A {Mesorhizobium loti MAFF303099} Probab=98.48 E-value=2.8e-07 Score=64.22 Aligned_cols=93 Identities=12% Similarity=0.240 Sum_probs=71.9 Q ss_pred HHHHCCCCCCCCCCCCCCCCHHHHHHHHHHCCCCCCCEEEEECCCCCHHHHHHHHCCCCEEEEECCCCCCHHHHHHHHHH Q ss_conf 99981898433658411239899999999719899987999758988234677502352599842554303688787532 Q gi|254780398|r 13 ILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQ 92 (284) Q Consensus 13 ll~~~~~~p~k~lGQnFL~d~~i~~~iv~~~~~~~~~~VlEIGpG~G~LT~~Ll~~~~~~v~aiEiD~~~~~~l~~~~~~ 92 (284) ..+.|+-.+.-..|.|=...... +.+.+....|..|||||||+|..|..|++.++.+|+++|+.+.+++.+++.... T Consensus 12 f~~~y~~~~~~~~~~~~~~~~~~---~~~~~p~~~g~rVLDiGCG~G~~~~~l~~~~~~~V~gvD~S~~~l~~a~~~~~~ 88 (243) T 3bkw_A 12 FFAGYSQLGRSIEGLDGAAEWPA---LRAMLPEVGGLRIVDLGCGFGWFCRWAHEHGASYVLGLDLSEKMLARARAAGPD 88 (243) T ss_dssp -------------CGGGCTTHHH---HHHHSCCCTTCEEEEETCTTCHHHHHHHHTTCSEEEEEESCHHHHHHHHHTSCS T ss_pred HHHHHHHHHHCCCCHHHHHHHHH---HHHHCCCCCCCEEEEECCCCCHHHHHHHHCCCCEEEEECCHHHHHHHHHHHCCC T ss_conf 99999862313003656377999---998579778899999788898999999975987899987579899999861344 Q ss_pred HHCCCCCCHHHHCCCCHH Q ss_conf 200122000000014315 Q gi|254780398|r 93 HPNRLEIIQDDALKVDFE 110 (284) Q Consensus 93 ~~~~~~ii~~Dal~~d~~ 110 (284) .+++++.+|+.++.++ T Consensus 89 --~~v~~~~~d~~~~~~~ 104 (243) T 3bkw_A 89 --TGITYERADLDKLHLP 104 (243) T ss_dssp --SSEEEEECCGGGCCCC T ss_pred --CCCCCCCCCCCCCCCC T ss_conf --4333100233446655 No 89 >2ex4_A Adrenal gland protein AD-003; methyltransferase, structural genomics, SGC, structural genomics consortium; HET: SAH; 1.75A {Homo sapiens} SCOP: c.66.1.42 Probab=98.46 E-value=4e-07 Score=63.24 Aligned_cols=88 Identities=16% Similarity=0.089 Sum_probs=63.2 Q ss_pred CCCCCCCEEEEECCCCCHHHHHHHHCCCCEEEEECCCCCCHHHHHHHHHHHH-CCCCCCHHHHCCCCHHHHCCCCCCEEE Q ss_conf 1989998799975898823467750235259984255430368878753220-012200000001431552133222011 Q gi|254780398|r 43 SGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQHP-NRLEIIQDDALKVDFEKFFNISSPIRI 121 (284) Q Consensus 43 ~~~~~~~~VlEIGpG~G~LT~~Ll~~~~~~v~aiEiD~~~~~~l~~~~~~~~-~~~~ii~~Dal~~d~~~~~~~~~~~~v 121 (284) .+...+..|||||||+|.+|..|+.+.+.+|++||+.+.+++.+++.+.... .+++++++|+.++++++- .-...+ T Consensus 75 ~~~~~~~~vLDiGcG~G~~~~~ll~~~~~~v~~vD~s~~~l~~ar~~~~~~~~~~v~~~~~d~~~l~~~~~---~fD~I~ 151 (241) T 2ex4_A 75 PNKTGTSCALDCGAGIGRITKRLLLPLFREVDMVDITEDFLVQAKTYLGEEGKRVRNYFCCGLQDFTPEPD---SYDVIW 151 (241) T ss_dssp --CCCCSEEEEETCTTTHHHHHTTTTTCSEEEEEESCHHHHHHHHHHTGGGGGGEEEEEECCGGGCCCCSS---CEEEEE T ss_pred CCCCCCCEEEEECCCCCHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHCCCCCEEEEECCHHHCCCCCC---CCCEEE T ss_conf 57778876999015707869999970599899999999999999987765046634899578887157757---831899 Q ss_pred EECCCHHHHHHH Q ss_conf 202322467889 Q gi|254780398|r 122 IANLPYNIGTRL 133 (284) Q Consensus 122 vgNLPYnIss~I 133 (284) ....-++++.+- T Consensus 152 ~~~vl~hl~d~~ 163 (241) T 2ex4_A 152 IQWVIGHLTDQH 163 (241) T ss_dssp EESCGGGSCHHH T ss_pred ECCCHHCCCCHH T ss_conf 646510475678 No 90 >1fbn_A MJ fibrillarin homologue; MJ proteins, ribosomal RNA processing, snoRNP, structural genomics, BSGC structure funded by NIH; 1.60A {Methanocaldococcus jannaschii} SCOP: c.66.1.3 PDB: 1g8s_A Probab=98.46 E-value=4.8e-07 Score=62.79 Aligned_cols=99 Identities=17% Similarity=0.176 Sum_probs=66.5 Q ss_pred HHHHHH---HHCCCCCCCEEEEECCCCCHHHHHHHHCCCC-EEEEECCCCCCHHHHHHHHHHHHCCCCCCHHHHCCCCHH Q ss_conf 999999---9719899987999758988234677502352-599842554303688787532200122000000014315 Q gi|254780398|r 35 ILKKIA---ESSGSLDGITVIEIGAGPGNLTQMLLTLGAR-KVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFE 110 (284) Q Consensus 35 i~~~iv---~~~~~~~~~~VlEIGpG~G~LT~~Ll~~~~~-~v~aiEiD~~~~~~l~~~~~~~~~~~~ii~~Dal~~d~~ 110 (284) ++.-|. +.+.+.+++.||++|||+|..|..+++..+. .|+|||+.+++++.++++....+| +..+.+|+...... T Consensus 59 l~a~i~~~l~~l~ikpg~~VLDlGcGtG~~~~~la~~~~~G~V~aVDiSp~mi~~a~~~a~~~~n-i~~i~~d~~~~~~~ 137 (230) T 1fbn_A 59 LAAAIIKGLKVMPIKRDSKILYLGASAGTTPSHVADIADKGIVYAIEYAPRIMRELLDACAEREN-IIPILGDANKPQEY 137 (230) T ss_dssp HHHHHHTTCCCCCCCTTCEEEEESCCSSHHHHHHHHHTTTSEEEEEESCHHHHHHHHHHTTTCTT-EEEEECCTTCGGGG T ss_pred HHHHHHHHHHHCCCCCCCEEEEECCCCCHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHCCC-CEEEEEECCCCCCC T ss_conf 99999855762687999999996797798999999758996599997998999999987764487-31798413586423 Q ss_pred HHCCCCCCE-EEEECCCHHHHHHHHHH Q ss_conf 521332220-11202322467889999 Q gi|254780398|r 111 KFFNISSPI-RIIANLPYNIGTRLLFN 136 (284) Q Consensus 111 ~~~~~~~~~-~vvgNLPYnIss~Il~~ 136 (284) .. ..... .++..+.+--..+++++ T Consensus 138 ~~--~~~~vd~i~~~~~~~~~~~~~l~ 162 (230) T 1fbn_A 138 AN--IVEKVDVIYEDVAQPNQAEILIK 162 (230) T ss_dssp TT--TSCCEEEEEECCCSTTHHHHHHH T ss_pred CC--CCCEEEEEEEECCCHHHHHHHHH T ss_conf 56--66359999710124278999999 No 91 >1or8_A Protein arginine N-methyltransferase 1; protein arginine methylation, adoMet-dependent methylation, transferase; HET: SAH; 2.35A {Rattus norvegicus} SCOP: c.66.1.6 PDB: 1orh_A* 1ori_A* Probab=98.45 E-value=1.7e-07 Score=65.64 Aligned_cols=92 Identities=23% Similarity=0.208 Sum_probs=66.9 Q ss_pred CCCCCCCCCCCC--CCCHHHHHHHHHHC----CCCCCCEEEEECCCCCHHHHHHHHCCCCEEEEECCCCCCHHHHHHHHH Q ss_conf 898433658411--23989999999971----989998799975898823467750235259984255430368878753 Q gi|254780398|r 18 KIIPKKYMGQNF--LLDLNILKKIAESS----GSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISS 91 (284) Q Consensus 18 ~~~p~k~lGQnF--L~d~~i~~~iv~~~----~~~~~~~VlEIGpG~G~LT~~Ll~~~~~~v~aiEiD~~~~~~l~~~~~ 91 (284) -+..-..+++|| |.|..-.+...+.+ .+.+++.||+||+|+|.|+...++.||++|+|+|.. .++..+++... T Consensus 22 ~~~~y~~~~~h~~ml~D~~r~~~y~~ai~~~~~~~~~~~VLDiG~G~G~ls~~aa~~Ga~~V~ave~s-~~~~~a~~~~~ 100 (340) T 1or8_A 22 YFDSYAHFGIHEEMLKDEVRTLTYRNSMFHNRHLFKDKVVLDVGSGTGILCMFAAKAGARKVIGIECS-SISDYAVKIVK 100 (340) T ss_dssp ------CCHHHHHHHHCHHHHHHHHHHHHTCHHHHTTCEEEEETCTTSHHHHHHHHTTCSEEEEEECS-THHHHHHHHHH T ss_pred HHCCCCCCHHHHHHHCCHHHHHHHHHHHHHCHHCCCCCEEEEECCCCCHHHHHHHHCCCCEEEEECCH-HHHHHHHHHHH T ss_conf 02032351778977477777999999998563105949799983788799999998089889996461-99999999999 Q ss_pred H--HHCCCCCCHHHHCCCCHH Q ss_conf 2--200122000000014315 Q gi|254780398|r 92 Q--HPNRLEIIQDDALKVDFE 110 (284) Q Consensus 92 ~--~~~~~~ii~~Dal~~d~~ 110 (284) . ..++++++++|+.+++++ T Consensus 101 ~n~~~~~i~~~~~~~~~l~~~ 121 (340) T 1or8_A 101 ANKLDHVVTIIKGKVEEVELP 121 (340) T ss_dssp HTTCTTTEEEEESCTTTCCCS T ss_pred HCCCCCEEEEEEEEEEECCCC T ss_conf 728783279997313430378 No 92 >3gu3_A Methyltransferase; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; HET: SAH; 2.30A {Bacillus cereus atcc 14579} PDB: 2gh1_A Probab=98.45 E-value=4.4e-07 Score=63.02 Aligned_cols=80 Identities=15% Similarity=0.300 Sum_probs=62.7 Q ss_pred CHHHHHHHHHHC-CCCCCCEEEEECCCCCHHHHHHHHCCC--CEEEEECCCCCCHHHHHHHHHHHHCCCCCCHHHHCCCC Q ss_conf 989999999971-989998799975898823467750235--25998425543036887875322001220000000143 Q gi|254780398|r 32 DLNILKKIAESS-GSLDGITVIEIGAGPGNLTQMLLTLGA--RKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVD 108 (284) Q Consensus 32 d~~i~~~iv~~~-~~~~~~~VlEIGpG~G~LT~~Ll~~~~--~~v~aiEiD~~~~~~l~~~~~~~~~~~~ii~~Dal~~d 108 (284) ++..+.-+++.+ .+.+...|||||||+|.+|..+++..+ .+|+++|+++.+++.+++.+...+.+++++++|+.+++ T Consensus 6 n~dyl~fli~~v~k~~~~~~ILDiGcG~G~~~~~la~~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~d~~~~~ 85 (284) T 3gu3_A 6 NDDYVSFLVNTVWKITKPVHIVDYGCGYGYLGLVLMPLLPEGSKYTGIDSGETLLAEARELFRLLPYDSEFLEGDATEIE 85 (284) T ss_dssp CHHHHHHHHHTTSCCCSCCEEEEETCTTTHHHHHHTTTSCTTCEEEEEESCHHHHHHHHHHHHSSSSEEEEEESCTTTCC T ss_pred HHHHHHHHHHHHHCCCCCCEEEEECCCCCHHHHHHHHHCCCCCEEEEECCCHHHHHHHHHHHHHCCCCCEEECCCCCCCC T ss_conf 77999999998635699897999548798999999985779988999849899999999866641420012001112479 Q ss_pred HHH Q ss_conf 155 Q gi|254780398|r 109 FEK 111 (284) Q Consensus 109 ~~~ 111 (284) +++ T Consensus 86 ~~~ 88 (284) T 3gu3_A 86 LND 88 (284) T ss_dssp CSS T ss_pred CCC T ss_conf 899 No 93 >3g5t_A Trans-aconitate 3-methyltransferase; structural genomics, protein structure initiative, PSI, center for eukaryotic structural genomics; HET: MSE SAH T8N; 1.12A {Saccharomyces cerevisiae} Probab=98.44 E-value=4.8e-07 Score=62.75 Aligned_cols=97 Identities=13% Similarity=0.050 Sum_probs=66.9 Q ss_pred HHHHHHHHHHCCCCCCCEEEEECCCCCHHHHHHHHCCC--CEEEEECCCCCCHHHHHHHHHHH---HCCCCCCHHHHCCC Q ss_conf 89999999971989998799975898823467750235--25998425543036887875322---00122000000014 Q gi|254780398|r 33 LNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGA--RKVIVIEKDQQFFPILKDISSQH---PNRLEIIQDDALKV 107 (284) Q Consensus 33 ~~i~~~iv~~~~~~~~~~VlEIGpG~G~LT~~Ll~~~~--~~v~aiEiD~~~~~~l~~~~~~~---~~~~~ii~~Dal~~ 107 (284) +..++.+++. .+.+++.|||||||+|.+|..|++.+. .+|++||+.+.+++..++..... ..++++..+|+.++ T Consensus 23 ~~~~~~l~~~-~~~~~~~VLDiGCGtG~~t~~la~~~~~~~~V~gvD~S~~mi~~a~~~~~~~~~~~~~v~~~~~dae~~ 101 (299) T 3g5t_A 23 SDFYKMIDEY-HDGERKLLVDVGCGPGTATLQMAQELKPFEQIIGSDLSATMIKTAEVIKEGSPDTYKNVSFKISSSDDF 101 (299) T ss_dssp HHHHHHHHHH-CCSCCSEEEEETCTTTHHHHHHHHHSSCCSEEEEEESCHHHHHHHHHHHHHCC-CCTTEEEEECCTTCC T ss_pred HHHHHHHHHC-CCCCCCEEEEECCCCCHHHHHHHHHCCCCCEEEEEECCHHHHHHHHHHHHHCCCCCCEEEEEEECHHHC T ss_conf 9999999951-778999699982608899999999649998799985988999999999986366753246898337765 Q ss_pred CHHHHC--CCCCCEEEEECCCHHHH Q ss_conf 315521--33222011202322467 Q gi|254780398|r 108 DFEKFF--NISSPIRIIANLPYNIG 130 (284) Q Consensus 108 d~~~~~--~~~~~~~vvgNLPYnIs 130 (284) ++.... ..+.--.|+++.-.+.. T Consensus 102 ~~~~~~~~~~~~fD~V~~~~~~h~~ 126 (299) T 3g5t_A 102 KFLGADSVDKQKIDMITAVECAHWF 126 (299) T ss_dssp GGGCTTTTTSSCEEEEEEESCGGGS T ss_pred CCCCCCCCCCCCCCEEEEECCEECC T ss_conf 4421234665565478870036315 No 94 >2ipx_A RRNA 2'-O-methyltransferase fibrillarin; FBL, structural genomics, structural genomics consortium, SGC; HET: MTA; 1.82A {Homo sapiens} Probab=98.44 E-value=5.3e-07 Score=62.48 Aligned_cols=98 Identities=16% Similarity=0.118 Sum_probs=68.3 Q ss_pred HHHHCCCCCCCEEEEECCCCCHHHHHHHHC-CC-CEEEEECCCCCCHHHHHHHHHHHHCCCCCCHHHHCCCCHHHHCCCC Q ss_conf 999719899987999758988234677502-35-2599842554303688787532200122000000014315521332 Q gi|254780398|r 39 IAESSGSLDGITVIEIGAGPGNLTQMLLTL-GA-RKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNIS 116 (284) Q Consensus 39 iv~~~~~~~~~~VlEIGpG~G~LT~~Ll~~-~~-~~v~aiEiD~~~~~~l~~~~~~~~~~~~ii~~Dal~~d~~~~~~~~ 116 (284) -++.+++.+++.|||+|||+|..|..+++. ++ .+|+|||+++.+++.+++.....+| +..+.+|+...+....... T Consensus 69 ~l~~l~lkpG~~VLDlG~G~G~~~~~la~~vg~~G~V~aVD~s~~~l~~a~~~a~~~~n-i~~i~~d~~~~~~~~~~~~- 146 (233) T 2ipx_A 69 GVDQIHIKPGAKVLYLGAASGTTVSHVSDIVGPDGLVYAVEFSHRSGRDLINLAKKRTN-IIPVIEDARHPHKYRMLIA- 146 (233) T ss_dssp TCSCCCCCTTCEEEEECCTTSHHHHHHHHHHCTTCEEEEECCCHHHHHHHHHHHHHCTT-EEEECSCTTCGGGGGGGCC- T ss_pred CHHHCCCCCCCEEEEECCCCCHHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHCCC-CCEEEEECCCCHHCCCCCC- T ss_conf 55525999999999965768989999999859996799997999999999997551466-6428975367011156652- Q ss_pred CCEEEEECCCHHHHHHHHHHHH Q ss_conf 2201120232246788999998 Q gi|254780398|r 117 SPIRIIANLPYNIGTRLLFNWI 138 (284) Q Consensus 117 ~~~~vvgNLPYnIss~Il~~ll 138 (284) .-..++..+++.-...++++-+ T Consensus 147 ~vd~i~~~~~~~~~~~~~l~~~ 168 (233) T 2ipx_A 147 MVDVIFADVAQPDQTRIVALNA 168 (233) T ss_dssp CEEEEEECCCCTTHHHHHHHHH T ss_pred EEEEEECCCCCCHHHHHHHHHH T ss_conf 6888531422651599999999 No 95 >2fk8_A Methoxy mycolic acid synthase 4; S-adenosylmethionine-dependent methyltransferase fold; HET: SAM; 2.00A {Mycobacterium tuberculosis H37RV} SCOP: c.66.1.18 PDB: 2fk7_A* 3ha3_A* 3ha5_A* 3ha7_A* Probab=98.42 E-value=4.2e-07 Score=63.16 Aligned_cols=75 Identities=11% Similarity=0.089 Sum_probs=61.5 Q ss_pred HHHHHHHHHHCCCCCCCEEEEECCCCCHHHHHHHHCCCCEEEEECCCCCCHHHHHHHHHHH--HCCCCCCHHHHCCC Q ss_conf 8999999997198999879997589882346775023525998425543036887875322--00122000000014 Q gi|254780398|r 33 LNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQH--PNRLEIIQDDALKV 107 (284) Q Consensus 33 ~~i~~~iv~~~~~~~~~~VlEIGpG~G~LT~~Ll~~~~~~v~aiEiD~~~~~~l~~~~~~~--~~~~~ii~~Dal~~ 107 (284) .+.++.+++.+++.+++.|||||||.|.++..+++....+|++|++++..+...++..... .+.+.+..+|...+ T Consensus 76 ~~k~~~i~~~l~l~~g~rVLDIGCG~G~~a~~~a~~~g~~v~gi~is~~q~~~a~~~~~~~gl~~~~~~~~~d~~~~ 152 (318) T 2fk8_A 76 YAKVDLNLDKLDLKPGMTLLDIGCGWGTTMRRAVERFDVNVIGLTLSKNQHARCEQVLASIDTNRSRQVLLQGWEDF 152 (318) T ss_dssp HHHHHHHHTTSCCCTTCEEEEESCTTSHHHHHHHHHHCCEEEEEESCHHHHHHHHHHHHTSCCSSCEEEEESCGGGC T ss_pred HHHHHHHHHHCCCCCCCEEEEECCCCCHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHHCCCCCHHHHHHCCHHHH T ss_conf 99999999963999999898978873699999998369638999899999999999987638741001654106550 No 96 >3lkd_A Type I restriction-modification system methyltransferase subunit; Q5M500_STRT2, STU0711, NESG, SUR80, structural genomics, PSI-2; 2.25A {Streptococcus thermophilus} Probab=98.42 E-value=1.4e-05 Score=53.77 Aligned_cols=190 Identities=12% Similarity=0.088 Sum_probs=110.8 Q ss_pred HHHHHCCCCCCCCCCCCCCCCHHHHHHHHHHC----CCCCCCEEEEECCCCCHHHHHHHHC----CCCEEEEECCCCCCH Q ss_conf 99998189843365841123989999999971----9899987999758988234677502----352599842554303 Q gi|254780398|r 12 TILSHYKIIPKKYMGQNFLLDLNILKKIAESS----GSLDGITVIEIGAGPGNLTQMLLTL----GARKVIVIEKDQQFF 83 (284) Q Consensus 12 ~ll~~~~~~p~k~lGQnFL~d~~i~~~iv~~~----~~~~~~~VlEIGpG~G~LT~~Ll~~----~~~~v~aiEiD~~~~ 83 (284) .+++++.-..++..||+| +-+.|++-||+.+ +...++.|++-.||.|.+-....+. ....+.+.|+|+..+ T Consensus 183 ~li~~~a~~~~~~~Ge~~-TP~~Iv~lmv~l~~~~~~~~~~~~I~DPacGsGgfL~~a~~~~~~~~~~~~~G~e~~~~~~ 261 (542) T 3lkd_A 183 YLIGQFATDSGKKAGEFY-TPQPVAKLMTQIAFLGREDKQGFTLYDATMGSGSLLLNAKRYSRQPQTVVYFGQELNTSTY 261 (542) T ss_dssp HHHHHHHCC---CCSSCC-CCHHHHHHHHHHHHTTCTTCTTCEEEETTCTTSTTGGGHHHHCSCTTTCEEEEEESCHHHH T ss_pred HHHHHHHHHHCCCCCCCC-CCHHHHHHHHHHCCCCCCCCCCCEEECCCCCCCHHHHHHHHHHHHHCCEEEEEEECCHHHH T ss_conf 999998886266477158-9889998578642556456789868327788455889888877500555787442667999 Q ss_pred HHHHHHHH--HH-HCCCCCCHHHHCCCCHHHHCCCCCCEEEEECCCHHHHH--------------------------HHH Q ss_conf 68878753--22-00122000000014315521332220112023224678--------------------------899 Q gi|254780398|r 84 PILKDISS--QH-PNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGT--------------------------RLL 134 (284) Q Consensus 84 ~~l~~~~~--~~-~~~~~ii~~Dal~~d~~~~~~~~~~~~vvgNLPYnIss--------------------------~Il 134 (284) ..++-.+- .. ..++.+.++|.+.-++.... ...--.||||.||+... .++ T Consensus 262 ~la~~nl~l~g~~~~~~~i~~~d~l~~~~~~~~-~~~fD~Il~NPPfg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fi 340 (542) T 3lkd_A 262 NLARMNMILHGVPIENQFLHNADTLDEDWPTQE-PTNFDGVLMNPPYSAKWSASSGFMDDPRFSPFGKLAPKSKADFAFL 340 (542) T ss_dssp HHHHHHHHHTTCCGGGEEEEESCTTTSCSCCSS-CCCBSEEEECCCTTCCCCCCGGGGGSTTTGGGSSCCCTTCCHHHHH T ss_pred HHHHHHHHHHCCCCCCCEEECCCCCCCCCCCCC-CCCEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHH T ss_conf 999998787246542220320565444443232-3200035634886777674211123510013577899862599999 Q ss_pred HHHHHHHCCCCCCCHHHHEEEHHHHHHHHHCCCHHHHHHHHHHHCCCCCEEEECCCCCCEECCCCCCCEEEEEECCCC Q ss_conf 999852010000001102033447887530123123323454320133201200011000010578757887301258 Q gi|254780398|r 135 FNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFPSPKVTSTVIHFIPHL 212 (284) Q Consensus 135 ~~ll~~~~~~~~~~~~vlmvQkEvA~Rl~a~pg~k~Yg~LSv~~q~~~~v~~~~~V~~~~F~P~PkVdS~vi~l~pk~ 212 (284) .+.+... ..++.+ +.+++-.-+ ... +..+..+==..--.+.++.+...|.+.| |...|..+|+-|.+++ T Consensus 341 ~~~~~~L-~~~gG~-~~iV~p~g~----L~~--~~~e~~iR~~Lle~~~i~aII~LP~~~F-~~t~i~t~Il~l~K~k 409 (542) T 3lkd_A 341 LHGYYHL-KQDNGV-MAIVLPHGV----LFR--GNAEGTIRKALLEEGAIDTVIGLPANIF-FNTSIPTTVIILKKNR 409 (542) T ss_dssp HHHHHTB-CTTTCE-EEEEEETHH----HHC--CTHHHHHHHHHHHTTCEEEEEECCSSCS-SSCCCCEEEEEECSSC T ss_pred HHHHHHH-CCCCCE-EEEEECCCC----CCC--CHHHHHHHHHHHHCCEEEEEEECCCCCC-CCCCCCEEEEEEECCC T ss_conf 9999986-637872-999954742----235--6277788888763585899997997666-6889878999996898 No 97 >1nt2_A Fibrillarin-like PRE-rRNA processing protein; adeMet, binding motif, coiled coil, RNA binding protein; HET: SAM; 2.90A {Archaeoglobus fulgidus dsm 4304} SCOP: c.66.1.3 Probab=98.41 E-value=1e-06 Score=60.69 Aligned_cols=103 Identities=15% Similarity=0.042 Sum_probs=69.3 Q ss_pred HHHHHHH--HCCCCCCCEEEEECCCCCHHHHHHHHCCC-CEEEEECCCCCCHHHHHHHHHHHHCCCCCCHHHHCCCCHHH Q ss_conf 9999999--71989998799975898823467750235-25998425543036887875322001220000000143155 Q gi|254780398|r 35 ILKKIAE--SSGSLDGITVIEIGAGPGNLTQMLLTLGA-RKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEK 111 (284) Q Consensus 35 i~~~iv~--~~~~~~~~~VlEIGpG~G~LT~~Ll~~~~-~~v~aiEiD~~~~~~l~~~~~~~~~~~~ii~~Dal~~d~~~ 111 (284) ++.-|.. .+.+.+++.||++|||+|..+..+++... ..|+|||+.+++++.|+++....+| +..+.+|+....... T Consensus 43 laa~i~~~~~l~ikpg~~VLDlG~GtG~~~~~la~~~~~g~V~avD~s~~~i~~a~~~a~~~~n-~~~i~~~~~~~~~~~ 121 (210) T 1nt2_A 43 LAAMILKGHRLKLRGDERVLYLGAASGTTVSHLADIVDEGIIYAVEYSAKPFEKLLELVRERNN-IIPLLFDASKPWKYS 121 (210) T ss_dssp HHHHHHTSCCCCCCSSCEEEEETCTTSHHHHHHHHHTTTSEEEEECCCHHHHHHHHHHHHHCSS-EEEECSCTTCGGGTT T ss_pred HHHHHHCCCCCCCCCCCEEEEECCCCCHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHCCC-EEEEEECCCCCCCCC T ss_conf 9999868776688998999995688888899999743698599996999999999977864897-079994056741122 Q ss_pred HCCCCCCEEEEECCCHHHHHHHHHHHHH Q ss_conf 2133222011202322467889999985 Q gi|254780398|r 112 FFNISSPIRIIANLPYNIGTRLLFNWIS 139 (284) Q Consensus 112 ~~~~~~~~~vvgNLPYnIss~Il~~ll~ 139 (284) ... .....++..+++.-..+++.+=+. T Consensus 122 ~~~-~~v~~i~~~~~~~~~~~~~l~~~~ 148 (210) T 1nt2_A 122 GIV-EKVDLIYQDIAQKNQIEILKANAE 148 (210) T ss_dssp TTC-CCEEEEEECCCSTTHHHHHHHHHH T ss_pred CCC-CEEEEEEEECCCHHHHHHHHHHHH T ss_conf 433-213588720236156899999999 No 98 >3ofk_A Nodulation protein S; NODS, N-methyltransferase, SAH, SAM, NOD factor, fixation, symbiosis, alpha/beta structure; HET: SAH; 1.85A {Bradyrhizobium SP} PDB: 3ofj_A* Probab=98.40 E-value=9.3e-07 Score=61.00 Aligned_cols=87 Identities=17% Similarity=0.228 Sum_probs=62.6 Q ss_pred HHHHCCCCCCCEEEEECCCCCHHHHHHHHCCCCEEEEECCCCCCHHHHHHHHHHHHCCCCCCHHHHCCCCHHHHCCCCCC Q ss_conf 99971989998799975898823467750235259984255430368878753220012200000001431552133222 Q gi|254780398|r 39 IAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSP 118 (284) Q Consensus 39 iv~~~~~~~~~~VlEIGpG~G~LT~~Ll~~~~~~v~aiEiD~~~~~~l~~~~~~~~~~~~ii~~Dal~~d~~~~~~~~~~ 118 (284) +...+...+...|||||||+|.+|..|++++ .+|+++|+++.+++.+++.....+ ++++..+|+.+.....-+ . T Consensus 43 l~~~l~~~~~~~vLDvGcG~G~~~~~la~~~-~~v~gvD~s~~~l~~a~~~~~~~~-~i~~~~~d~~~~~~~~~f----D 116 (216) T 3ofk_A 43 LRLSLSSGAVSNGLEIGCAAGAFTEKLAPHC-KRLTVIDVMPRAIGRACQRTKRWS-HISWAATDILQFSTAELF----D 116 (216) T ss_dssp HHHHTTTSSEEEEEEECCTTSHHHHHHGGGE-EEEEEEESCHHHHHHHHHHTTTCS-SEEEEECCTTTCCCSCCE----E T ss_pred HHHHCCCCCCCEEEEEECCCCHHHHHHHHHC-CEEEEEECCHHHHHHHHHHHCCCC-EEECCCCCHHHHCCCCCC----C T ss_conf 9984799899909996388989999999709-989999699899999998615462-231010202232357871----4 Q ss_pred EEEEECCCHHHHH Q ss_conf 0112023224678 Q gi|254780398|r 119 IRIIANLPYNIGT 131 (284) Q Consensus 119 ~~vvgNLPYnIss 131 (284) ..++.+.=|++.. T Consensus 117 ~V~~~~vl~~~~~ 129 (216) T 3ofk_A 117 LIVVAEVLYYLED 129 (216) T ss_dssp EEEEESCGGGSSS T ss_pred EEEECCCHHHCCC T ss_conf 8998455775899 No 99 >3g2m_A PCZA361.24; SAM-dependent methyltransferase, glycopeptide antibiotics biosynthesis, structural genomics; 2.00A {Amycolatopsis orientalis} PDB: 3g2o_A* 3g2p_A* 3g2q_A* Probab=98.40 E-value=4.7e-07 Score=62.86 Aligned_cols=77 Identities=25% Similarity=0.402 Sum_probs=60.7 Q ss_pred HHHHHHHHHCCCCCCCEEEEECCCCCHHHHHHHHCCCCEEEEECCCCCCHHHHHHHHHHHH----CCCCCCHHHHCCCCH Q ss_conf 9999999971989998799975898823467750235259984255430368878753220----012200000001431 Q gi|254780398|r 34 NILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQHP----NRLEIIQDDALKVDF 109 (284) Q Consensus 34 ~i~~~iv~~~~~~~~~~VlEIGpG~G~LT~~Ll~~~~~~v~aiEiD~~~~~~l~~~~~~~~----~~~~ii~~Dal~~d~ 109 (284) .-...++..+.+.. ..|||+|||+|.+|..|+++++ +|+++|+++.+++.+++.....+ .+++++++|+.++++ T Consensus 70 ~~~~~~~~~~~p~~-g~vLDlGcG~G~~~~~la~~g~-~v~gvD~s~~ml~~a~~~~~~~~~~~~~~~~~~~~d~~~~~~ 147 (299) T 3g2m_A 70 SEAREFATRTGPVS-GPVLELAAGMGRLTFPFLDLGW-EVTALELSTSVLAAFRKRLAEAPADVRDRCTLVQGDMSAFAL 147 (299) T ss_dssp HHHHHHHHHHCCCC-SCEEEETCTTTTTHHHHHTTTC-CEEEEESCHHHHHHHHHHHHTSCHHHHTTEEEEECBTTBCCC T ss_pred HHHHHHHHHCCCCC-CCEEEEECCCCHHHHHHHHCCC-EEEEEECCHHHHHHHHHHHHHCCCCCCCCEEEEECCHHHCCC T ss_conf 99999998349999-9799991667789999997799-799996999999999999986476632204478603210674 Q ss_pred HHH Q ss_conf 552 Q gi|254780398|r 110 EKF 112 (284) Q Consensus 110 ~~~ 112 (284) ++- T Consensus 148 ~~~ 150 (299) T 3g2m_A 148 DKR 150 (299) T ss_dssp SCC T ss_pred CCC T ss_conf 555 No 100 >3bxo_A N,N-dimethyltransferase; desosamine, sugar, carbohydrate, antibiotic, SAM, adoMet; HET: SAM UPP; 2.00A {Streptomyces venezuelae} Probab=98.40 E-value=3e-07 Score=64.04 Aligned_cols=77 Identities=8% Similarity=0.168 Sum_probs=60.0 Q ss_pred CCCCHHHHHHHHHHCCCCCCCEEEEECCCCCHHHHHHHHCCCCEEEEECCCCCCHHHHHHHHHHHHCCCCCCHHHHCCCC Q ss_conf 12398999999997198999879997589882346775023525998425543036887875322001220000000143 Q gi|254780398|r 29 FLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVD 108 (284) Q Consensus 29 FL~d~~i~~~iv~~~~~~~~~~VlEIGpG~G~LT~~Ll~~~~~~v~aiEiD~~~~~~l~~~~~~~~~~~~ii~~Dal~~d 108 (284) |=-+...+.++++...+ ++..|||||||+|..|..|+++++ +|+++|+.+.+++.++++.. +++++++|+.++. T Consensus 23 ~~~~~~~~~~~~~~~~~-~~~~VLDiGcG~G~~~~~la~~g~-~v~giD~S~~~l~~a~~~~~----~~~~~~~d~~~~~ 96 (239) T 3bxo_A 23 YAAEASDIADLVRSRTP-EASSLLDVACGTGTHLEHFTKEFG-DTAGLELSEDMLTHARKRLP----DATLHQGDMRDFR 96 (239) T ss_dssp HHHHHHHHHHHHHHHCT-TCCEEEEETCTTSHHHHHHHHHHS-EEEEEESCHHHHHHHHHHCT----TCEEEECCTTTCC T ss_pred HHHHHHHHHHHHHHHCC-CCCEEEEEECCCCHHHHHHHHCCC-EEEEEECCHHHHHHHHHCCC----CCCCCCCCCCCCC T ss_conf 89999999999997489-949899981758499999997399-69999696788788863365----4422322112677 Q ss_pred HHH Q ss_conf 155 Q gi|254780398|r 109 FEK 111 (284) Q Consensus 109 ~~~ 111 (284) +++ T Consensus 97 ~~~ 99 (239) T 3bxo_A 97 LGR 99 (239) T ss_dssp CSS T ss_pred CCC T ss_conf 331 No 101 >2as0_A Hypothetical protein PH1915; RNA methyltransferase, structural genomics, PSI, protein structure initiative; 1.80A {Pyrococcus horikoshii} SCOP: b.122.1.9 c.66.1.51 Probab=98.39 E-value=4.5e-07 Score=62.98 Aligned_cols=101 Identities=20% Similarity=0.192 Sum_probs=74.8 Q ss_pred CCCCHHHHHHHHHHCCCCCCCEEEEECCCCCHHHHHHHHCCCCEEEEECCCCCCHHHHHHHHHHH--HCCCCCCHHHHCC Q ss_conf 12398999999997198999879997589882346775023525998425543036887875322--0012200000001 Q gi|254780398|r 29 FLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQH--PNRLEIIQDDALK 106 (284) Q Consensus 29 FL~d~~i~~~iv~~~~~~~~~~VlEIGpG~G~LT~~Ll~~~~~~v~aiEiD~~~~~~l~~~~~~~--~~~~~ii~~Dal~ 106 (284) |-.|..-.+..+... ..+++.||++|+|+|.+|..++..+|++|+++|+++..++.++++...+ .++.+++.+|+.+ T Consensus 200 ~flDqr~~R~~~~~~-~~~g~~VLDl~~g~G~~si~aa~~ga~~V~~vD~s~~al~~a~~N~~~Ngl~~~~~~~~~D~~~ 278 (396) T 2as0_A 200 FFLDQRENRLALEKW-VQPGDRVLDVFTYTGGFAIHAAIAGADEVIGIDKSPRAIETAKENAKLNGVEDRMKFIVGSAFE 278 (396) T ss_dssp CCSTTHHHHHHHGGG-CCTTCEEEETTCTTTHHHHHHHHTTCSEEEEEESCHHHHHHHHHHHHHTTCGGGEEEEESCHHH T ss_pred CCHHHHHHHHHHHHH-CCCCCEEEEECCCCCHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHCCCCCCCEEEECCHHH T ss_conf 666678889999975-1589769881787788899999779974688718888999999999983997455699662988 Q ss_pred CCHHHHCC-CCCCEEEEECCCHHHHH Q ss_conf 43155213-32220112023224678 Q gi|254780398|r 107 VDFEKFFN-ISSPIRIIANLPYNIGT 131 (284) Q Consensus 107 ~d~~~~~~-~~~~~~vvgNLPYnIss 131 (284) +- ..... ...--.|+.+.|+...+ T Consensus 279 ~l-~~~~~~~~~FD~Ii~DpP~~~~~ 303 (396) T 2as0_A 279 EM-EKLQKKGEKFDIVVLDPPAFVQH 303 (396) T ss_dssp HH-HHHHHTTCCEEEEEECCCCSCSS T ss_pred HH-HHHHHHCCCCCEEEECCHHHCCC T ss_conf 87-88886078998799765121156 No 102 >1ws6_A Methyltransferase; structural genomics, riken structural genomics/proteomics initiative, RSGI; 2.50A {Thermus thermophilus HB8} SCOP: c.66.1.46 Probab=98.38 E-value=5.6e-07 Score=62.35 Aligned_cols=94 Identities=15% Similarity=0.129 Sum_probs=64.0 Q ss_pred CCCCCCEEEEECCCCCHHHHHHHHCCCCEEEEECCCCCCHHHHHHHHHHH--HCCCCCCHHHHCCCCHHHHCCCCCCEEE Q ss_conf 98999879997589882346775023525998425543036887875322--0012200000001431552133222011 Q gi|254780398|r 44 GSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQH--PNRLEIIQDDALKVDFEKFFNISSPIRI 121 (284) Q Consensus 44 ~~~~~~~VlEIGpG~G~LT~~Ll~~~~~~v~aiEiD~~~~~~l~~~~~~~--~~~~~ii~~Dal~~d~~~~~~~~~~~~v 121 (284) ...++..||++|+|.|+++.+.+.+++ ++++||+|+..++.++++...+ .+++.+..+|.... .... ....--.| T Consensus 38 ~~~~~~~vLDl~~G~G~~~i~a~~~ga-~vv~vD~~~~ai~~~~~N~~~~g~~~~v~~~~~d~~~~-~~~~-~~~~fDlI 114 (171) T 1ws6_A 38 RYPRRGRFLDPFAGSGAVGLEAASEGW-EAVLVEKDPEAVRLLKENVRRTGLGARVVALPVEVFLP-EAKA-QGERFTVA 114 (171) T ss_dssp HCTTCCEEEEETCSSCHHHHHHHHTTC-EEEEECCCHHHHHHHHHHHHHHTCCCEEECSCHHHHHH-HHHH-TTCCEEEE T ss_pred CCCCCCEEEECCCCHHHHHHHHHHCCC-CCCCEECCHHHHHHHHHHHHHCCCCCEEEEEEHHHHHH-HHHH-CCCCEEEE T ss_conf 457979899962067899999998089-53006068789999998788606655599977898755-5553-38855799 Q ss_pred EECCCHHHHH-HHHHHHHHH Q ss_conf 2023224678-899999852 Q gi|254780398|r 122 IANLPYNIGT-RLLFNWISA 140 (284) Q Consensus 122 vgNLPYnIss-~Il~~ll~~ 140 (284) +.|.||+... +.+..++.. T Consensus 115 ~~DPPY~~~~~~~~~~l~~~ 134 (171) T 1ws6_A 115 FMAPPYAMDLAALFGELLAS 134 (171) T ss_dssp EECCCTTSCTTHHHHHHHHH T ss_pred EECCCCCCCHHHHHHHHHHC T ss_conf 98799886769999999982 No 103 >3iv6_A Putative Zn-dependent alcohol dehydrogenase; alpha/beta fold, rossmann-fold, structural genomics, PSI-2, protein structure initiative; HET: SAM; 2.70A {Rhodobacter sphaeroides 2} Probab=98.38 E-value=5.3e-07 Score=62.48 Aligned_cols=85 Identities=19% Similarity=0.074 Sum_probs=62.8 Q ss_pred HHCCCCCCCEEEEECCCCCHHHHHHHHCCCCEEEEECCCCCCHHHHHHHHHHHHCCCCCCHHHHCCCCHHHHCCCCCCEE Q ss_conf 97198999879997589882346775023525998425543036887875322001220000000143155213322201 Q gi|254780398|r 41 ESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIR 120 (284) Q Consensus 41 ~~~~~~~~~~VlEIGpG~G~LT~~Ll~~~~~~v~aiEiD~~~~~~l~~~~~~~~~~~~ii~~Dal~~d~~~~~~~~~~~~ 120 (284) -..++.++..|||||||+|.+|..|+.+++ .|+++|+.+.+++.+++........+....+|+......+ +.--. T Consensus 39 ~l~~~~pg~~vLdvGcG~G~~~~~l~~~g~-~v~g~D~S~~ml~~a~~~~~~~~~~~~~~~~~~~~~~~~~----~~fD~ 113 (261) T 3iv6_A 39 FLENIVPGSTVAVIGASTRFLIEKALERGA-SVTVFDFSQRMCDDLAEALADRCVTIDLLDITAEIPKELA----GHFDF 113 (261) T ss_dssp HTTTCCTTCEEEEECTTCHHHHHHHHHTTC-EEEEEESCHHHHHHHHHHTSSSCCEEEECCTTSCCCGGGT----TCCSE T ss_pred HHHCCCCCCEEEEECCCCCHHHHHHHHCCC-EEEEECCCHHHHHHHHHHHHHCCCCCCEEECCHHHCCCCC----CCCCE T ss_conf 971799999799988978889999996799-8999777899999999974640565330212253233457----88468 Q ss_pred EEECCCHHHH Q ss_conf 1202322467 Q gi|254780398|r 121 IIANLPYNIG 130 (284) Q Consensus 121 vvgNLPYnIs 130 (284) |+++-.++.- T Consensus 114 Vv~~~~~~~~ 123 (261) T 3iv6_A 114 VLNDRLINRF 123 (261) T ss_dssp EEEESCGGGS T ss_pred EEECCHHHHC T ss_conf 9981378746 No 104 >2p7i_A Hypothetical protein; putative methyltransferase, structural genomics, joint cente structural genomics, JCSG; 1.74A {Pectobacterium atrosepticum SCRI1043} SCOP: c.66.1.41 PDB: 2p7h_A Probab=98.32 E-value=4.4e-07 Score=63.02 Aligned_cols=63 Identities=11% Similarity=0.144 Sum_probs=50.9 Q ss_pred CCCCCEEEEECCCCCHHHHHHHHCCCCEEEEECCCCCCHHHHHHHHHHHHCCCCCCHHHHCCCCHHH Q ss_conf 8999879997589882346775023525998425543036887875322001220000000143155 Q gi|254780398|r 45 SLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEK 111 (284) Q Consensus 45 ~~~~~~VlEIGpG~G~LT~~Ll~~~~~~v~aiEiD~~~~~~l~~~~~~~~~~~~ii~~Dal~~d~~~ 111 (284) ..++..|||||||+|.++..+++.++ ++++||+++.+++.+++.+.. ++.++++|+....+++ T Consensus 40 ~~~~~~VLDiGCG~G~~~~~l~~~~~-~v~giD~s~~~l~~a~~~~~~---~~~~~~~~~~~~~~~~ 102 (250) T 2p7i_A 40 FFRPGNLLELGSFKGDFTSRLQEHFN-DITCVEASEEAISHAQGRLKD---GITYIHSRFEDAQLPR 102 (250) T ss_dssp GCCSSCEEEESCTTSHHHHHHTTTCS-CEEEEESCHHHHHHHHHHSCS---CEEEEESCGGGCCCSS T ss_pred CCCCCCEEEEECCCCHHHHHHHHHCC-EEEEEECCHHHHHHHHHHHHC---CCCEEECCHHHCCCCC T ss_conf 07999399992898799999995099-799996716888899986303---5420202222126655 No 105 >2fpo_A Methylase YHHF; structural genomics, putative methyltransferase, PSI, protein structure initiative, midwest center for structural genomics; HET: MSE; 2.05A {Escherichia coli K12} SCOP: c.66.1.46 Probab=98.31 E-value=1.1e-06 Score=60.64 Aligned_cols=120 Identities=13% Similarity=0.134 Sum_probs=80.3 Q ss_pred HHHHHHHHCC-CCCCCEEEEECCCCCHHHHHHHHCCCCEEEEECCCCCCHHHHHHHHHHH-HCCCCCCHHHHCCCCHHHH Q ss_conf 9999999719-8999879997589882346775023525998425543036887875322-0012200000001431552 Q gi|254780398|r 35 ILKKIAESSG-SLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQH-PNRLEIIQDDALKVDFEKF 112 (284) Q Consensus 35 i~~~iv~~~~-~~~~~~VlEIGpG~G~LT~~Ll~~~~~~v~aiEiD~~~~~~l~~~~~~~-~~~~~ii~~Dal~~d~~~~ 112 (284) +-+-+...+. ...+..||++.+|+|++..+.+.++|++|+.||.|+..+..+++..... .++.+++.+|++++- .. T Consensus 41 vrealFn~L~~~~~~~~vLDLfaGsG~lgiEalsRGa~~v~fVE~~~~a~~~l~~N~~~~~~~~~~ii~~d~~~~l-~~- 118 (202) T 2fpo_A 41 VRETLFNWLAPVIVDAQCLDCFAGSGALGLEALSRYAAGATLIEMDRAVSQQLIKNLATLKAGNARVVNSNAMSFL-AQ- 118 (202) T ss_dssp HHHHHHHHHHHHHTTCEEEETTCTTCHHHHHHHHTTCSEEEEECSCHHHHHHHHHHHHHTTCCSEEEECSCHHHHH-SS- T ss_pred HHHHHHHHHHHHCCCCEEEECCCCCCHHHHHHHCCCCCEEEEEEECCCHHHHHHHHHHHHCCCCCEEEECCHHHHH-HH- T ss_conf 9999999866432898699888785588999870799886899970333567887898746355359953245655-41- Q ss_pred CCCCCC-EEEEECCCHHHH--HHHHHHHHHHHCCCCCCCHHHHEEEHHHHHH Q ss_conf 133222-011202322467--8899999852010000001102033447887 Q gi|254780398|r 113 FNISSP-IRIIANLPYNIG--TRLLFNWISADTWPPFWESLTLLFQKEVGER 161 (284) Q Consensus 113 ~~~~~~-~~vvgNLPYnIs--s~Il~~ll~~~~~~~~~~~~vlmvQkEvA~R 161 (284) .+.+ -.|+...||.-. .+++..+...... -...++.++.+-... T Consensus 119 --~~~~fDlIflDPPY~~~~~~~~l~~l~~~~lL---~~~~iIiiE~~~~~~ 165 (202) T 2fpo_A 119 --KGTPHNIVFVDPPFRRGLLEETINLLEDNGWL---ADEALIYVESEVENG 165 (202) T ss_dssp --CCCCEEEEEECCSSSTTTHHHHHHHHHHTTCE---EEEEEEEEEEEGGGC T ss_pred --CCCCCCEEEECCCCCCCHHHHHHHHHHHCCCC---CCCCEEEEEECCCCC T ss_conf --27766689976998754599999999988890---899499998247878 No 106 >3hem_A Cyclopropane-fatty-acyl-phospholipid synthase 2; protein-ligand complex, cytoplasm, lipid synthesis, methyltransferase; HET: D22; 2.39A {Mycobacterium tuberculosis} PDB: 1kpi_A* Probab=98.30 E-value=1.5e-06 Score=59.75 Aligned_cols=74 Identities=18% Similarity=0.173 Sum_probs=59.6 Q ss_pred HHHHHHHHHCCCCCCCEEEEECCCCCHHHHHHHHCCCCEEEEECCCCCCHHHHHHHHHH--HHCCCCCCHHHHCCC Q ss_conf 99999999719899987999758988234677502352599842554303688787532--200122000000014 Q gi|254780398|r 34 NILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQ--HPNRLEIIQDDALKV 107 (284) Q Consensus 34 ~i~~~iv~~~~~~~~~~VlEIGpG~G~LT~~Ll~~~~~~v~aiEiD~~~~~~l~~~~~~--~~~~~~ii~~Dal~~ 107 (284) +.++.+++.+++.+++.|||||||.|.++..+++....+|++|.+.+.-++..++.... ..+++++...|+... T Consensus 59 ~k~~~~~~~l~l~~g~rVLDiGCGwG~~a~~~a~~~g~~v~gitlS~~Q~~~a~~~~~~~gl~~~v~~~~~d~~~~ 134 (302) T 3hem_A 59 AKRKLALDKLNLEPGMTLLDIGCGWGSTMRHAVAEYDVNVIGLTLSENQYAHDKAMFDEVDSPRRKEVRIQGWEEF 134 (302) T ss_dssp HHHHHHHHTTCCCTTCEEEEETCTTSHHHHHHHHHHCCEEEEEECCHHHHHHHHHHHHHSCCSSCEEEEECCGGGC T ss_pred HHHHHHHHHHCCCCCCEEEEECCCCCHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHHHHCCHHHHHHHCCCCCC T ss_conf 9999999970899989898857885399999999869838998377889999999998740021233444043234 No 107 >3l8d_A Methyltransferase; structural genomics, PSI, nysgrc, protein structure initiative, NEW YORK SGX research center for structural genomics; 1.70A {Bacillus thuringiensis} Probab=98.30 E-value=5.3e-07 Score=62.51 Aligned_cols=72 Identities=21% Similarity=0.277 Sum_probs=57.2 Q ss_pred HHHHHHHHCCCCCCCEEEEECCCCCHHHHHHHHCCCCEEEEECCCCCCHHHHHHHHHHHHCCCCCCHHHHCCCCHHH Q ss_conf 99999997198999879997589882346775023525998425543036887875322001220000000143155 Q gi|254780398|r 35 ILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEK 111 (284) Q Consensus 35 i~~~iv~~~~~~~~~~VlEIGpG~G~LT~~Ll~~~~~~v~aiEiD~~~~~~l~~~~~~~~~~~~ii~~Dal~~d~~~ 111 (284) ++..+.+.+ .++..|||||||+|.+|..|++.++ +|+++|.++.+++.+++.... .+++++.+|+.++++++ T Consensus 43 ~~~~~~~~l--~~~~~VLDiGcG~G~~~~~l~~~~~-~v~giD~s~~~l~~a~~~~~~--~~~~~~~~~~~~l~~~~ 114 (242) T 3l8d_A 43 IIPFFEQYV--KKEAEVLDVGCGDGYGTYKLSRTGY-KAVGVDISEVMIQKGKERGEG--PDLSFIKGDLSSLPFEN 114 (242) T ss_dssp HHHHHHHHS--CTTCEEEEETCTTSHHHHHHHHTTC-EEEEEESCHHHHHHHHTTTCB--TTEEEEECBTTBCSSCT T ss_pred HHHHHHHHC--CCCCEEEEECCCCCHHHHHHHHCCC-EEEEEECCHHHHHHHHHCCCC--CCCCCCCCCCCCCCCCC T ss_conf 999999858--9969799965888599999996499-899997974667998750344--42222234435678887 No 108 >3lcc_A Putative methyl chloride transferase; halide methyltransferase; HET: SAH; 1.80A {Arabidopsis thaliana} Probab=98.30 E-value=1.8e-06 Score=59.18 Aligned_cols=76 Identities=8% Similarity=0.137 Sum_probs=59.0 Q ss_pred HHHHHHHHCCCCCCCEEEEECCCCCHHHHHHHHCCCCEEEEECCCCCCHHHHHHHHHHH--HCCCCCCHHHHCCCCHHHH Q ss_conf 99999997198999879997589882346775023525998425543036887875322--0012200000001431552 Q gi|254780398|r 35 ILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQH--PNRLEIIQDDALKVDFEKF 112 (284) Q Consensus 35 i~~~iv~~~~~~~~~~VlEIGpG~G~LT~~Ll~~~~~~v~aiEiD~~~~~~l~~~~~~~--~~~~~ii~~Dal~~d~~~~ 112 (284) .+..+++.... +...|||+|||.|..+..|++.++ +|+++|+++.+++.+++..... ..+++++++|+.+.+.... T Consensus 55 ~l~~~~~~~~~-~~~rVLdlGCG~G~~~~~la~~g~-~V~giD~S~~ai~~a~~~~~~~~~~~~v~~~~~D~~~~~~~~~ 132 (235) T 3lcc_A 55 LIVHLVDTSSL-PLGRALVPGCGGGHDVVAMASPER-FVVGLDISESALAKANETYGSSPKAEYFSFVKEDVFTWRPTEL 132 (235) T ss_dssp HHHHHHHTTCS-CCEEEEEETCTTCHHHHHHCBTTE-EEEEECSCHHHHHHHHHHHTTSGGGGGEEEECCCTTTCCCSSC T ss_pred HHHHHHHHCCC-CCCCEEEECCCCCHHHHHHHHCCC-EEEEEECCHHHHHHHHHHHHHCCCCCCEEEEECCHHHHCCCCC T ss_conf 99999985799-999489943888789999986698-7999746699999999987641544210023256767175566 No 109 >3m70_A Tellurite resistance protein TEHB homolog; structural genomics, PSI-2, protein ST initiative; 1.95A {Haemophilus influenzae} Probab=98.29 E-value=1.5e-06 Score=59.62 Aligned_cols=72 Identities=14% Similarity=0.284 Sum_probs=55.8 Q ss_pred HHHHCCCCCCCEEEEECCCCCHHHHHHHHCCCCEEEEECCCCCCHHHHHHHHHHHHCCCCCCHHHHCCCCHHH Q ss_conf 9997198999879997589882346775023525998425543036887875322001220000000143155 Q gi|254780398|r 39 IAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEK 111 (284) Q Consensus 39 iv~~~~~~~~~~VlEIGpG~G~LT~~Ll~~~~~~v~aiEiD~~~~~~l~~~~~~~~~~~~ii~~Dal~~d~~~ 111 (284) +++.+...++..|||||||.|..+..|++.++ +|++||+++.+++.+++......-++..+..|+...++.+ T Consensus 112 ~~~~~~~~~~~~vLDiGcG~G~~~~~la~~g~-~v~gvD~s~~~i~~a~~~~~~~~~~~~~~~~d~~~~~~~~ 183 (286) T 3m70_A 112 VVDAAKIISPCKVLDLGCGQGRNSLYLSLLGY-DVTSWDHNENSIAFLNETKEKENLNISTALYDINAANIQE 183 (286) T ss_dssp HHHHHHHSCSCEEEEESCTTCHHHHHHHHTTC-EEEEEESCHHHHHHHHHHHHHTTCCEEEEECCGGGCCCCS T ss_pred HHHHCCCCCCCEEEEECCCCCHHHHHHHHCCC-EEEEEECCHHHHHHHHHHHHHCCCCCEEEECHHHHHCCCC T ss_conf 99858889969799983779899999985899-7999989889999999865422662024440022110135 No 110 >1u2z_A Histone-lysine N-methyltransferase, H3 lysine-79 specific; histone methyltransferase, nucleosome; HET: SAH; 2.20A {Saccharomyces cerevisiae} SCOP: c.66.1.31 Probab=98.29 E-value=1.5e-06 Score=59.72 Aligned_cols=62 Identities=18% Similarity=0.105 Sum_probs=54.4 Q ss_pred CCHHHHHHHHHHCCCCCCCEEEEECCCCCHHHHHHHHC-CCCEEEEECCCCCCHHHHHHHHHH Q ss_conf 39899999999719899987999758988234677502-352599842554303688787532 Q gi|254780398|r 31 LDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTL-GARKVIVIEKDQQFFPILKDISSQ 92 (284) Q Consensus 31 ~d~~i~~~iv~~~~~~~~~~VlEIGpG~G~LT~~Ll~~-~~~~v~aiEiD~~~~~~l~~~~~~ 92 (284) +.+..+..|++.+++.+++.||++|||.|.++..++.. +++++++||+.+.+++.+++.... T Consensus 226 ~~p~~i~~Il~~l~Lkpgd~fLDLGCG~G~vvl~aA~~~g~~~viGIDis~~~l~~A~~~~~e 288 (433) T 1u2z_A 226 LLPNFLSDVYQQCQLKKGDTFMDLGSGVGNCVVQAALECGCALSFGCEIMDDASDLTILQYEE 288 (433) T ss_dssp BCHHHHHHHHHHTTCCTTCEEEEESCTTSHHHHHHHHHHCCSEEEEEECCHHHHHHHHHHHHH T ss_pred CCHHHHHHHHHHHCCCCCCEEEECCCCCCHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHH T ss_conf 688999999998289999989974899989999999975998799997999999999999999 No 111 >2h00_A Methyltransferase 10 domain containing protein; structural genomics, structural genomics consortium, SGC; HET: SAH; 2.00A {Homo sapiens} SCOP: c.66.1.54 Probab=98.29 E-value=1.8e-06 Score=59.28 Aligned_cols=117 Identities=13% Similarity=0.110 Sum_probs=74.2 Q ss_pred HHCCCCCCCCCCCCCCCCH-----HHHHHHHHHCCC-----CCCCEEEEECCCCCHHHHHHHHCCCC-EEEEECCCCCCH Q ss_conf 9818984336584112398-----999999997198-----99987999758988234677502352-599842554303 Q gi|254780398|r 15 SHYKIIPKKYMGQNFLLDL-----NILKKIAESSGS-----LDGITVIEIGAGPGNLTQMLLTLGAR-KVIVIEKDQQFF 83 (284) Q Consensus 15 ~~~~~~p~k~lGQnFL~d~-----~i~~~iv~~~~~-----~~~~~VlEIGpG~G~LT~~Ll~~~~~-~v~aiEiD~~~~ 83 (284) ..|++. =.+--++|+=+ +.++.|.+.+.. .+...+|+||+|.|.+.-.|+.+.+. +++++|+|+..+ T Consensus 25 ~~~gl~--~~~~~~~L~P~~p~R~~y~~~i~dlL~~~~~~~~~~~~~lDiGtGsg~I~~~L~~~~~~~~~~~~Di~~~al 102 (254) T 2h00_A 25 EDFGLS--IDIPLERLIPTVPLRLNYIHWVEDLIGHQDSDKSTLRRGIDIGTGASCIYPLLGATLNGWYFLATEVDDMCF 102 (254) T ss_dssp HHHCCC--CCCCTTSCCCCHHHHHHHHHHHHHHHCCCCGGGCCCCEEEEESCTTTTHHHHHHHHHHCCEEEEEESCHHHH T ss_pred HHCCCE--EECCCCCCCCCCCCHHHHHHHHHHHHCCCCCCCCCCCEEEEECCCHHHHHHHHHHHCCCCEEEEEECCHHHH T ss_conf 865965--687999347998981569999999970546666777548995678789999999977997599998999999 Q ss_pred HHHHHHHHHH--HCCCCCCHHHHCCCCHHHHCC-CCCC-EEEEECCCHHHHHHH Q ss_conf 6887875322--001220000000143155213-3222-011202322467889 Q gi|254780398|r 84 PILKDISSQH--PNRLEIIQDDALKVDFEKFFN-ISSP-IRIIANLPYNIGTRL 133 (284) Q Consensus 84 ~~l~~~~~~~--~~~~~ii~~Dal~~d~~~~~~-~~~~-~~vvgNLPYnIss~I 133 (284) +.+++....+ .+++.+++.|--..-+..... .... -.|++|.||.-++.- T Consensus 103 ~~A~~N~~~n~l~~~i~~~~~~~~~~i~~~~~~~~~~~fD~iv~NPPY~~~~~~ 156 (254) T 2h00_A 103 NYAKKNVEQNNLSDLIKVVKVPQKTLLMDALKEESEIIYDFCMCNPPFFANQLE 156 (254) T ss_dssp HHHHHHHHHTTCTTTEEEEECCTTCSSTTTSTTCCSCCBSEEEECCCCC----- T ss_pred HHHHHHHHHHCCCCCEEEEECCHHHHHHHHHHHHCCCCEEEEEECCCCCCCHHH T ss_conf 999999998387652245652327767666666436765499936855577022 No 112 >3c0k_A UPF0064 protein YCCW; PUA domain, adoMet dependent methyltransferase fold; 2.00A {Escherichia coli K12} Probab=98.29 E-value=1.6e-06 Score=59.58 Aligned_cols=105 Identities=15% Similarity=0.180 Sum_probs=78.6 Q ss_pred CCC--CCCCHHHHHHHHHHCCCCCCCEEEEECCCCCHHHHHHHHCCCCEEEEECCCCCCHHHHHHHHHHH--H-CCCCCC Q ss_conf 841--12398999999997198999879997589882346775023525998425543036887875322--0-012200 Q gi|254780398|r 26 GQN--FLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQH--P-NRLEII 100 (284) Q Consensus 26 GQn--FL~d~~i~~~iv~~~~~~~~~~VlEIGpG~G~LT~~Ll~~~~~~v~aiEiD~~~~~~l~~~~~~~--~-~~~~ii 100 (284) ||+ |..|.+-.++.++.. .++..||++++|+|..+...+..+|++|++||+++..++.+++++..+ + .+.+++ T Consensus 199 g~ktG~flDqR~~R~~v~~~--~~g~rVLdlf~~tG~~si~Aa~~GA~~V~~vD~s~~al~~a~~N~~~Ngl~~~~~~~i 276 (396) T 3c0k_A 199 GHKTGYYLDQRDSRLATRRY--VENKRVLNCFSYTGGFAVSALMGGCSQVVSVDTSQEALDIARQNVELNKLDLSKAEFV 276 (396) T ss_dssp SSTTSSCGGGHHHHHHHHHH--CTTCEEEEESCTTCSHHHHHHHTTCSEEEEEESCHHHHHHHHHHHHHTTCCGGGEEEE T ss_pred CCCCCCCHHHHHHHHHHHHH--CCCCEEEECCCCCCHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHHCCCCCCCEEE T ss_conf 67577553068999999976--5998687538866889999997799759999898999999999999829984345789 Q ss_pred HHHHCCCCHHHHCCCCCCEEEEECCCHHHHHH Q ss_conf 00000143155213322201120232246788 Q gi|254780398|r 101 QDDALKVDFEKFFNISSPIRIIANLPYNIGTR 132 (284) Q Consensus 101 ~~Dal~~d~~~~~~~~~~~~vvgNLPYnIss~ 132 (284) ++|+.++--.........-.||-+.|+.+.+. T Consensus 277 ~~d~~~~l~~~~~~~~~fD~IilDPP~f~~~~ 308 (396) T 3c0k_A 277 RDDVFKLLRTYRDRGEKFDVIVMDPPKFVENK 308 (396) T ss_dssp ESCHHHHHHHHHHTTCCEEEEEECCSSTTTCS T ss_pred ECCHHHHHHHHHHHHCCCCEEEECCCCCCCCH T ss_conf 42299999999875359998998783224561 No 113 >2kw5_A SLR1183 protein; structural genomics, northeast structural genomics consortium (NESG), PSI-2, protein structure initiative, unknown function; NMR {Synechocystis} PDB: 3mer_A Probab=98.28 E-value=6.3e-07 Score=62.06 Aligned_cols=65 Identities=14% Similarity=0.265 Sum_probs=54.1 Q ss_pred CCCCEEEEECCCCCHHHHHHHHCCCCEEEEECCCCCCHHHHHHHHHHHHCCCCCCHHHHCCCCHHH Q ss_conf 999879997589882346775023525998425543036887875322001220000000143155 Q gi|254780398|r 46 LDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEK 111 (284) Q Consensus 46 ~~~~~VlEIGpG~G~LT~~Ll~~~~~~v~aiEiD~~~~~~l~~~~~~~~~~~~ii~~Dal~~d~~~ 111 (284) .++..|||+|||+|..|..|++++. +|+++|+++.+++.+++......-+++++.+|+.+++++. T Consensus 28 ~~~~~vLDlGcG~G~~~~~la~~G~-~V~~vD~s~~~l~~a~~~~~~~~~~~~~~~~d~~~~~~~~ 92 (202) T 2kw5_A 28 IPQGKILCLAEGEGRNACFLASLGY-EVTAVDQSSVGLAKAKQLAQEKGVKITTVQSNLADFDIVA 92 (202) T ss_dssp SCSSEEEECCCSCTHHHHHHHTTTC-EEEEECSSHHHHHHHHHHHHHHTCCEEEECCBTTTBSCCT T ss_pred CCCCCEEEECCCCCHHHHHHHHCCC-CEEEEECCHHHHHHHHHHHHHHCCCEEEEECCHHHCCCCC T ss_conf 8989399983778999999998699-1467777899999999988871995589982263389988 No 114 >3khk_A Type I restriction-modification system methylation subunit; structural genomics, PSI-2, protein structure initiative; 2.55A {Methanosarcina mazei} Probab=98.27 E-value=1.6e-05 Score=53.29 Aligned_cols=186 Identities=13% Similarity=0.117 Sum_probs=110.0 Q ss_pred HHHHCCCCCCCCCCCCCCCCHHHHHHHHHHCCCCCCCEEEEECCCCCHHHHHHHHC----------------CCCEEEEE Q ss_conf 99981898433658411239899999999719899987999758988234677502----------------35259984 Q gi|254780398|r 13 ILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTL----------------GARKVIVI 76 (284) Q Consensus 13 ll~~~~~~p~k~lGQnFL~d~~i~~~iv~~~~~~~~~~VlEIGpG~G~LT~~Ll~~----------------~~~~v~ai 76 (284) +++++.-..+|+.||.| +-+.+++-||+.+++.++ .|++--||+|.+-.+..+. ....+.++ T Consensus 212 ll~~~~~~~~k~~G~ff-TP~~Iv~lmv~ll~p~~~-~I~DPacGsGgfLi~a~~~i~~~~~~~~~~~~~~~~~~~l~G~ 289 (544) T 3khk_A 212 FLGQFALAEGKQGGQYY-TPKSIVTLIVEMLEPYKG-RVYDPAMGSGGFFVSSDKFIEKHANVKHYNASEQKKQISVYGQ 289 (544) T ss_dssp HHHHHHHTTTCCSTTTC-CCHHHHHHHHHHHCCCSE-EEEESSCTTCHHHHHHHHHHHHHHHHHTSCHHHHGGGEEEEEC T ss_pred HHHHHHHHCCCCCCEEC-CCHHHHHHHHHCCCCCCC-CEECCCCCCCHHHHHHHHHHHHHCCCCCCCCHHHHHHCEEECC T ss_conf 99999886076476554-818999999862389988-3703777761789999999998245222220222201106150 Q ss_pred CCCCCCHHHHHHHHH--HHHCCCCCCHHHHCCCCHHHHCCCCCCEEEEECCCHHHHH----------------------- Q ss_conf 255430368878753--2200122000000014315521332220112023224678----------------------- Q gi|254780398|r 77 EKDQQFFPILKDISS--QHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGT----------------------- 131 (284) Q Consensus 77 EiD~~~~~~l~~~~~--~~~~~~~ii~~Dal~~d~~~~~~~~~~~~vvgNLPYnIss----------------------- 131 (284) |+|+..+..++-.+- ..+....+.++|.+.-+... ....-.|++|.||+... T Consensus 290 Ei~~~~~~la~~nm~l~g~~~~~~~~~~d~l~~~~~~---~~~fD~Il~NPPfg~~~~~~~~~~~~~~~~~~~~~~~~~~ 366 (544) T 3khk_A 290 ESNPTTWKLAAMNMVIRGIDFNFGKKNADSFLDDQHP---DLRADFVMTNPPFNMKDWWHEKLADDPRWTINTNGEKRIL 366 (544) T ss_dssp CCCHHHHHHHHHHHHHTTCCCBCCSSSCCTTTSCSCT---TCCEEEEEECCCSSCCSCCCGGGTTCGGGEECCC--CEEC T ss_pred CCCHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCC---CCCCCEEEECCCCCCCCCCCCCCCCCHHHHHCCCCCCCCC T ss_conf 3877999999988986188866453567543465565---5446757506987766555300013545540345643457 Q ss_pred ---------HHHHHHHHHHCCCCCCCHHHHEEEHHHHHHHHHCCCHHHHHHHHHHHCCCCCEEEECCCCCCEECCCCCCC Q ss_conf ---------89999985201000000110203344788753012312332345432013320120001100001057875 Q gi|254780398|r 132 ---------RLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFPSPKVT 202 (284) Q Consensus 132 ---------~Il~~ll~~~~~~~~~~~~vlmvQkEvA~Rl~a~pg~k~Yg~LSv~~q~~~~v~~~~~V~~~~F~P~PkVd 202 (284) .++.+.+... .+ ..+.++++-.-= +... + ..+..+=-..--.+.++-+...|.+.|++. .|. T Consensus 367 ~~~~~~~~~~Fi~~~l~~L-k~-~G~~aiIvp~~~----l~~~-~-~~e~~iR~~Ll~~~~i~aII~LP~~~F~~t-~i~ 437 (544) T 3khk_A 367 TPPTGNANFAWMLHMLYHL-AP-TGSMALLLANGS----MSSN-T-NNEGEIRKTLVEQDLVECMVALPGQLFTNT-QIP 437 (544) T ss_dssp CCCTTCTHHHHHHHHHHTE-EE-EEEEEEEEETHH----HHCC-G-GGHHHHHHHHHHTTCEEEEEECCTTBCCSC-SSC T ss_pred CCCCCCHHHHHHHHHHHHC-CC-CCEEEEEECCCC----CCCC-C-CHHHHHHHHHHHCCCEEEEEECCHHCCCCC-CCC T ss_conf 8998747899999999717-77-780699976885----4367-8-717899999996695899972882006899-997 Q ss_pred EEEEEECCCC Q ss_conf 7887301258 Q gi|254780398|r 203 STVIHFIPHL 212 (284) Q Consensus 203 S~vi~l~pk~ 212 (284) ++|+-|...+ T Consensus 438 t~Ilvl~K~k 447 (544) T 3khk_A 438 ACIWFLTKDK 447 (544) T ss_dssp EEEEEEESCC T ss_pred EEEEEEECCC T ss_conf 5999998898 No 115 >1g8a_A Fibrillarin-like PRE-rRNA processing protein; rRNA binding, RNA binding, structural genomics, BSGC structure funded by NIH; 1.40A {Pyrococcus horikoshii} SCOP: c.66.1.3 PDB: 2nnw_B 1pry_A Probab=98.27 E-value=3.3e-06 Score=57.57 Aligned_cols=68 Identities=22% Similarity=0.247 Sum_probs=55.3 Q ss_pred HHHCCCCCCCEEEEECCCCCHHHHHHHHC-CC-CEEEEECCCCCCHHHHHHHHHHHHCCCCCCHHHHCCCC Q ss_conf 99719899987999758988234677502-35-25998425543036887875322001220000000143 Q gi|254780398|r 40 AESSGSLDGITVIEIGAGPGNLTQMLLTL-GA-RKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVD 108 (284) Q Consensus 40 v~~~~~~~~~~VlEIGpG~G~LT~~Ll~~-~~-~~v~aiEiD~~~~~~l~~~~~~~~~~~~ii~~Dal~~d 108 (284) ++.+++.+|+.||++|+|+|..|..+++. ++ ..|+|||+++.++..+++.....+| +..+.+|+-... T Consensus 66 l~~l~i~pG~~VLDlG~G~G~~~~~la~~vg~~G~V~avD~s~~~l~~l~~~~~~~~n-i~~v~~da~~~~ 135 (227) T 1g8a_A 66 LKNFPIKPGKSVLYLGIASGTTASHVSDIVGWEGKIFGIEFSPRVLRELVPIVEERRN-IVPILGDATKPE 135 (227) T ss_dssp CCCCCCCTTCEEEEETTTSTTHHHHHHHHHCTTSEEEEEESCHHHHHHHHHHHSSCTT-EEEEECCTTCGG T ss_pred HHHCCCCCCCEEEEEECCCCHHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHCCC-CEEEEEECCCHH T ss_conf 5316989999999971787889999999848996699998999999999987876698-349998767944 No 116 >1im8_A YECO; methyltransferase, adenosylhomocysteine, structural genomics, hypothetical protein, structure 2 function project, S2F; HET: SAI; 2.20A {Haemophilus influenzae rd KW20} SCOP: c.66.1.14 Probab=98.26 E-value=2e-06 Score=58.97 Aligned_cols=67 Identities=18% Similarity=0.174 Sum_probs=53.9 Q ss_pred CCCCCEEEEECCCCCHHHHHHHHCC--C-CEEEEECCCCCCHHHHHHHHHHHH--CCCCCCHHHHCCCCHHH Q ss_conf 8999879997589882346775023--5-259984255430368878753220--01220000000143155 Q gi|254780398|r 45 SLDGITVIEIGAGPGNLTQMLLTLG--A-RKVIVIEKDQQFFPILKDISSQHP--NRLEIIQDDALKVDFEK 111 (284) Q Consensus 45 ~~~~~~VlEIGpG~G~LT~~Ll~~~--~-~~v~aiEiD~~~~~~l~~~~~~~~--~~~~ii~~Dal~~d~~~ 111 (284) ..++..|||||||+|..|..+++.. + -++++|++.+.+++.++++....+ .+++.+++|+..++..+ T Consensus 56 ~~~~~~vLDlGcGtG~~~~~l~~~~~~~~~~v~giD~S~~ml~~A~~k~~~~~~~~~~~~~~~d~~~~~~~~ 127 (244) T 1im8_A 56 VTADSNVYDLGCSRGAATLSARRNINQPNVKIIGIDNSQPMVERCRQHIAAYHSEIPVEILCNDIRHVEIKN 127 (244) T ss_dssp CCTTCEEEEESCTTCHHHHHHHHTCCCSSCEEEEECSCHHHHHHHHHHHHTSCCSSCEEEECSCTTTCCCCS T ss_pred CCCCCEEEEEEECCCHHHHHHHHHCCCCCCEEEEECCCHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCC T ss_conf 799798999200222889998863369980899976978999999864431065432110123210001243 No 117 >1kpg_A CFA synthase;, cyclopropane-fatty-acyl-phospholipid synthase 1; mixed alpha beta fold, structural genomics, PSI; HET: SAH 16A; 2.00A {Mycobacterium tuberculosis} SCOP: c.66.1.18 PDB: 1kp9_A* 1kph_A* 1tpy_A* 1l1e_A* Probab=98.25 E-value=1.8e-06 Score=59.21 Aligned_cols=75 Identities=9% Similarity=0.123 Sum_probs=60.0 Q ss_pred HHHHHHHHHHCCCCCCCEEEEECCCCCHHHHHHHHCCCCEEEEECCCCCCHHHHHHHHHH--HHCCCCCCHHHHCCC Q ss_conf 899999999719899987999758988234677502352599842554303688787532--200122000000014 Q gi|254780398|r 33 LNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQ--HPNRLEIIQDDALKV 107 (284) Q Consensus 33 ~~i~~~iv~~~~~~~~~~VlEIGpG~G~LT~~Ll~~~~~~v~aiEiD~~~~~~l~~~~~~--~~~~~~ii~~Dal~~ 107 (284) .+.++.+++.+++.+|+.|||||||.|.+...+++....+|+++.+.+.-++..++.... ..+++++..+|+... T Consensus 50 ~~k~~~l~~~l~l~~G~~VLDiGCG~G~~a~~~A~~~g~~v~git~s~~q~~~a~~~~~~~~~~~~~~~~~~d~~~~ 126 (287) T 1kpg_A 50 IAKIDLALGKLGLQPGMTLLDVGCGWGATMMRAVEKYDVNVVGLTLSKNQANHVQQLVANSENLRSKRVLLAGWEQF 126 (287) T ss_dssp HHHHHHHHTTTTCCTTCEEEEETCTTSHHHHHHHHHHCCEEEEEESCHHHHHHHHHHHHTCCCCSCEEEEESCGGGC T ss_pred HHHHHHHHHHCCCCCCCEEEEECCCHHHHHHHHHHHCCCCEEEEECCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHC T ss_conf 99999999971999999899968852599999999679846999689999999999987614540157887436641 No 118 >2gpy_A O-methyltransferase; structural genomics, PSI, protein structure initiative, NEW YORK SGX research center for structural genomics; HET: MSE; 1.90A {Bacillus halodurans c-125} Probab=98.24 E-value=1.4e-06 Score=59.86 Aligned_cols=97 Identities=16% Similarity=0.231 Sum_probs=69.1 Q ss_pred CCCHHHHHHHHHHCCCCCCCEEEEECCCCCHHHHHHHHCCCC-EEEEECCCCCCHHHHHHHHHH--HHCCCCCCHHHHCC Q ss_conf 239899999999719899987999758988234677502352-599842554303688787532--20012200000001 Q gi|254780398|r 30 LLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGAR-KVIVIEKDQQFFPILKDISSQ--HPNRLEIIQDDALK 106 (284) Q Consensus 30 L~d~~i~~~iv~~~~~~~~~~VlEIGpG~G~LT~~Ll~~~~~-~v~aiEiD~~~~~~l~~~~~~--~~~~~~ii~~Dal~ 106 (284) .+++....-+...+...+...|||||+|.|.-|..++...+. +|+++|+++..++.+++.+.. ..++++++.||+.+ T Consensus 37 ii~~~~~~~l~~l~~~~~~~~VLEIGtg~G~Stl~la~~~p~~~v~tiD~~~~~~~~A~~~~~~~gl~~~I~~~~gda~d 116 (233) T 2gpy_A 37 IMDLLGMESLLHLLKMAAPARILEIGTAIGYSAIRMAQALPEATIVSIERDERRYEEAHKHVKALGLESRIELLFGDALQ 116 (233) T ss_dssp CCCHHHHHHHHHHHHHHCCSEEEEECCTTSHHHHHHHHHCTTCEEEEECCCHHHHHHHHHHHHHTTCTTTEEEECSCGGG T ss_pred CCCHHHHHHHHHHHHHHCCCEEEEEECCCCHHHHHHHHHCCCCEEEEEEECHHHHHHHHHHHHHHHHCCCCEEEECCHHH T ss_conf 77889999999998865899899961121299999998789977999970489999999999997421211265332877 Q ss_pred CCHHHHCCCCCCEEEE---ECCCHH Q ss_conf 4315521332220112---023224 Q gi|254780398|r 107 VDFEKFFNISSPIRII---ANLPYN 128 (284) Q Consensus 107 ~d~~~~~~~~~~~~vv---gNLPYn 128 (284) +.. .+ +...++-+| +..+.+ T Consensus 117 ~l~-~l-~~~~~fD~ifiD~~k~~~ 139 (233) T 2gpy_A 117 LGE-KL-ELYPLFDVLFIDAAKGQY 139 (233) T ss_dssp SHH-HH-TTSCCEEEEEEEGGGSCH T ss_pred HHH-HH-CCCCCCCEEEECCCHHHH T ss_conf 777-51-135776289972766768 No 119 >3jwg_A HEN1, methyltransferase type 12; 1.90A {Clostridium thermocellum} PDB: 3jwi_A Probab=98.23 E-value=4.5e-06 Score=56.74 Aligned_cols=98 Identities=16% Similarity=0.202 Sum_probs=64.1 Q ss_pred HHHHHHHHHHCCCCCCCEEEEECCCCCHHHHHHHHCCC-CEEEEECCCCCCHHHHHHHHHHHH------CCCCCCHHHHC Q ss_conf 89999999971989998799975898823467750235-259984255430368878753220------01220000000 Q gi|254780398|r 33 LNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGA-RKVIVIEKDQQFFPILKDISSQHP------NRLEIIQDDAL 105 (284) Q Consensus 33 ~~i~~~iv~~~~~~~~~~VlEIGpG~G~LT~~Ll~~~~-~~v~aiEiD~~~~~~l~~~~~~~~------~~~~ii~~Dal 105 (284) +.-++++.+.+...+++.|||||||.|.+|..|++.++ .+|+++++++.+++.+++...... .......+|+. T Consensus 15 ~~r~~~v~~~l~~~~~~rVLDvGCG~G~~~~~La~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~ 94 (219) T 3jwg_A 15 QQRLGTVVAVLKSVNAKKVIDLGCGEGNLLSLLLKDKSFEQITGVDVSYSVLERAKDRLKIDRLPEMQRKRISLFQSSLV 94 (219) T ss_dssp HHHHHHHHHHHHHTTCCEEEEETCTTCHHHHHHHTSTTCCEEEEEESCHHHHHHHHHHHTGGGSCHHHHTTEEEEECCSS T ss_pred HHHHHHHHHHCCCCCCCEEEEEECCCCHHHHHHHHHCCCCEEEECCCCHHHHHHHHHHHHHCCCCHHHCCCCCCCCCCHH T ss_conf 99999999964112849899981878999999998389745632259999999999986550441232001000114533 Q ss_pred CCCHHHHCCCCCCEEEEECCCHHHHHHH Q ss_conf 1431552133222011202322467889 Q gi|254780398|r 106 KVDFEKFFNISSPIRIIANLPYNIGTRL 133 (284) Q Consensus 106 ~~d~~~~~~~~~~~~vvgNLPYnIss~I 133 (284) ..+...- .-...+..+.=++++.+- T Consensus 95 ~~~~~~~---~fD~i~~~~vl~hl~~~~ 119 (219) T 3jwg_A 95 YRDKRFS---GYDAATVIEVIEHLDENR 119 (219) T ss_dssp SCCGGGT---TCSEEEEESCGGGCCHHH T ss_pred HCCHHCC---CCCEEHHHHHHHHCCHHH T ss_conf 2500036---554562755697189589 No 120 >3ou2_A SAM-dependent methyltransferase; O-methyltransferase, SAH; HET: SAH; 1.50A {Streptomyces luridus} PDB: 3ou6_A* 3ou7_A* Probab=98.23 E-value=3.2e-06 Score=57.68 Aligned_cols=66 Identities=17% Similarity=0.180 Sum_probs=52.9 Q ss_pred HHCCCCCCCEEEEECCCCCHHHHHHHHCCCCEEEEECCCCCCHHHHHHHHHHHHCCCCCCHHHHCCCCHH Q ss_conf 9719899987999758988234677502352599842554303688787532200122000000014315 Q gi|254780398|r 41 ESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFE 110 (284) Q Consensus 41 ~~~~~~~~~~VlEIGpG~G~LT~~Ll~~~~~~v~aiEiD~~~~~~l~~~~~~~~~~~~ii~~Dal~~d~~ 110 (284) .......+..|||||||+|.+|..|++.+ .+|+++|+.+.+++.+++.. .+ +++++.+|+.++.++ T Consensus 40 ~l~~~~~~~~vLDvGcG~G~~~~~la~~g-~~v~gvD~S~~~l~~a~~~~--~~-~v~~~~~d~~~~~~~ 105 (218) T 3ou2_A 40 RLRAGNIRGDVLELASGTGYWTRHLSGLA-DRVTALDGSAEMIAEAGRHG--LD-NVEFRQQDLFDWTPD 105 (218) T ss_dssp HHTTTTSCSEEEEESCTTSHHHHHHHHHS-SEEEEEESCHHHHHHHGGGC--CT-TEEEEECCTTSCCCS T ss_pred HHHCCCCCCCEEEECCCCCHHHHHHHHCC-CEEEEEECCCHHHHHHHHHH--CC-CEEECCCHHHCCCCC T ss_conf 97366889979998898878999999619-98999978317899999730--55-111001101012568 No 121 >2avn_A Ubiquinone/menaquinone biosynthesis methyltransfe related protein; ubiquinone/menaquinone biosynthesis methyltransferase-relate protein; HET: SAI; 2.35A {Thermotoga maritima MSB8} SCOP: c.66.1.41 Probab=98.23 E-value=2.6e-06 Score=58.25 Aligned_cols=60 Identities=15% Similarity=0.412 Sum_probs=49.3 Q ss_pred CCCCCEEEEECCCCCHHHHHHHHCCCCEEEEECCCCCCHHHHHHHHHHHHCCCCCCHHHHCCCCHH Q ss_conf 899987999758988234677502352599842554303688787532200122000000014315 Q gi|254780398|r 45 SLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFE 110 (284) Q Consensus 45 ~~~~~~VlEIGpG~G~LT~~Ll~~~~~~v~aiEiD~~~~~~l~~~~~~~~~~~~ii~~Dal~~d~~ 110 (284) +.+++.|||||||+|.+|..++++++ +|+++|+.+.+++.+++... .+++++|+.+++++ T Consensus 52 ~~~~~~VLDiGCGtG~~~~~la~~g~-~v~giD~S~~ml~~Ak~~~~-----~~~~~~~~~~l~~~ 111 (260) T 2avn_A 52 LKNPCRVLDLGGGTGKWSLFLQERGF-EVVLVDPSKEMLEVAREKGV-----KNVVEAKAEDLPFP 111 (260) T ss_dssp CCSCCEEEEETCTTCHHHHHHHTTTC-EEEEEESCHHHHHHHHHHTC-----SCEEECCTTSCCSC T ss_pred CCCCCEEEEECCCCCHHHHHHHHCCC-EEEEEECHHHHHHHHHHHCC-----CCCCCCHHHHCCCC T ss_conf 79969899989999888999986199-89999352378899988363-----22000157508886 No 122 >1pjz_A Thiopurine S-methyltransferase; polymorphism, S-adenosylmethionine, drug metabolism; NMR {Pseudomonas syringae PV} SCOP: c.66.1.36 Probab=98.22 E-value=1.7e-06 Score=59.34 Aligned_cols=77 Identities=16% Similarity=0.115 Sum_probs=60.2 Q ss_pred CCHHHHHHHHHHCCCCCCCEEEEECCCCCHHHHHHHHCCCCEEEEECCCCCCHHHHHHHHHHHH-------------CCC Q ss_conf 3989999999971989998799975898823467750235259984255430368878753220-------------012 Q gi|254780398|r 31 LDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQHP-------------NRL 97 (284) Q Consensus 31 ~d~~i~~~iv~~~~~~~~~~VlEIGpG~G~LT~~Ll~~~~~~v~aiEiD~~~~~~l~~~~~~~~-------------~~~ 97 (284) +++.+. +....+++.++..|||+|||+|..+..|+++++ +|+++++.+.+++.++++..... .++ T Consensus 7 ~~~~~~-~~~~~l~~~~g~rVLD~GCG~G~~~~~La~~g~-~v~gvD~S~~~i~~a~~~~~~~~~~~~~~~~~~~~~~~~ 84 (203) T 1pjz_A 7 VNKDLQ-QYWSSLNVVPGARVLVPLCGKSQDMSWLSGQGY-HVVGAELSEAAVERYFTERGEQPHITSQGDFKVYAAPGI 84 (203) T ss_dssp STHHHH-HHHHHHCCCTTCEEEETTTCCSHHHHHHHHHCC-EEEEEEECHHHHHHHHHHHCSCSEEEEETTEEEEECSSS T ss_pred HCHHHH-HHHHHCCCCCCCEEEEECCCCCHHHHHHHHCCC-EEEEECCCHHHHHHHHHHHCCCCCCCCCCHHHCCCCCEE T ss_conf 488999-999964999999799973789888999996798-778852659999999997234553200011110023236 Q ss_pred CCCHHHHCCCCH Q ss_conf 200000001431 Q gi|254780398|r 98 EIIQDDALKVDF 109 (284) Q Consensus 98 ~ii~~Dal~~d~ 109 (284) ++.++|+...+. T Consensus 85 ~~~~~~~~~l~~ 96 (203) T 1pjz_A 85 EIWCGDFFALTA 96 (203) T ss_dssp EEEEECCSSSTH T ss_pred EEEEEEHHCCCC T ss_conf 899830111663 No 123 >3ckk_A TRNA (guanine-N(7)-)-methyltransferase; mettl1, S-adenosyl-L-methionine, tRNA processing, structural genomics, structural genomics consortium, SGC; HET: SAM; 1.55A {Homo sapiens} Probab=98.22 E-value=2.4e-06 Score=58.47 Aligned_cols=80 Identities=18% Similarity=0.244 Sum_probs=56.4 Q ss_pred CCCEEEEECCCCCHHHHHHHHCCCC-EEEEECCCCCCHHHHHHHHHH-------HHCCCCCCHHHHCCCCHHHHCCCCCC Q ss_conf 9987999758988234677502352-599842554303688787532-------20012200000001431552133222 Q gi|254780398|r 47 DGITVIEIGAGPGNLTQMLLTLGAR-KVIVIEKDQQFFPILKDISSQ-------HPNRLEIIQDDALKVDFEKFFNISSP 118 (284) Q Consensus 47 ~~~~VlEIGpG~G~LT~~Ll~~~~~-~v~aiEiD~~~~~~l~~~~~~-------~~~~~~ii~~Dal~~d~~~~~~~~~~ 118 (284) ..-.|||||||.|..|..++++.+. .+++||+....+..+...... .-.|+.++++||.++ +++++..++- T Consensus 46 ~~~~iLeIGcG~G~~l~~lA~~~P~~~~iGiei~~~~~~~~~~~~~~~~~~~~~~l~Nv~~~~~da~~~-l~~~~~~~s~ 124 (235) T 3ckk_A 46 AQVEFADIGCGYGGLLVELSPLFPDTLILGLEIRVKVSDYVQDRIRALRAAPAGGFQNIACLRSNAMKH-LPNFFYKGQL 124 (235) T ss_dssp CCEEEEEETCTTCHHHHHHGGGSTTSEEEEEESCHHHHHHHHHHHHHHHHSTTCCCTTEEEEECCTTTC-HHHHCCTTCE T ss_pred CCCEEEEEECCCCHHHHHHHHHCCCCCEEEEEECHHHHHHHHHHHHHHHHHHHCCCCEEEEEECCHHHH-HHHHHCCCCC T ss_conf 898799982268699999998686872898861358999999899999999870885699985444877-6665135540 Q ss_pred EEEEECCCH Q ss_conf 011202322 Q gi|254780398|r 119 IRIIANLPY 127 (284) Q Consensus 119 ~~vvgNLPY 127 (284) -.|.-|.|- T Consensus 125 d~v~i~fPD 133 (235) T 3ckk_A 125 TKMFFLFPD 133 (235) T ss_dssp EEEEEESCC T ss_pred HHCEEECCC T ss_conf 010576689 No 124 >2i6g_A Putative methyltransferase; 16420133, structural genomics, joint center for structural genomics, JCSG, protein structure initiative; HET: MLY; 1.90A {Salmonella typhimurium LT2} SCOP: c.66.1.44 Probab=98.21 E-value=4.8e-06 Score=56.55 Aligned_cols=71 Identities=15% Similarity=0.237 Sum_probs=52.1 Q ss_pred HHHHCCCCCCCEEEEECCCCCHHHHHHHHCCCCEEEEECCCCCCHHHHHHHHHHHH-CCCCCCHHHHCCCCHH Q ss_conf 99971989998799975898823467750235259984255430368878753220-0122000000014315 Q gi|254780398|r 39 IAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQHP-NRLEIIQDDALKVDFE 110 (284) Q Consensus 39 iv~~~~~~~~~~VlEIGpG~G~LT~~Ll~~~~~~v~aiEiD~~~~~~l~~~~~~~~-~~~~ii~~Dal~~d~~ 110 (284) +++.+.......|||||||+|..|..|+++++ +|+++|+++.+++.+++...... ..++....|+....++ T Consensus 23 ~~~~~~~l~pgrVLDiGcG~G~~~~~la~~g~-~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~d~~~~~~~ 94 (199) T 2i6g_A 23 VLAAAXVVAPGRTLDLGCGNGRNSLYLAANGY-DVTAWDXNPASMANLERIXAAEGLDNLQTDLVDLNTLTFD 94 (199) T ss_dssp HHHHHTTSCSCEEEEETCTTSHHHHHHHHTTC-EEEEEESCHHHHHHHHHHHHHTTCTTEEEEECCTTTCCCC T ss_pred HHHHHCCCCCCCEEEECCCCCHHHHHHHHCCC-EEEEEECCCHHHHHHHHHHHHCCCCCHHHHHEECCCCCCC T ss_conf 99984378989689985889789999985499-8999958718999999864213764100100000024668 No 125 >3e8s_A Putative SAM dependent methyltransferase; NP_744700.1, structural genomics, joint center for structural genomics, JCSG; HET: SAH; 2.10A {Pseudomonas putida KT2440} Probab=98.21 E-value=8e-07 Score=61.39 Aligned_cols=69 Identities=16% Similarity=0.183 Sum_probs=51.1 Q ss_pred HHHHHHCCCCCCCEEEEECCCCCHHHHHHHHCCCCEEEEECCCCCCHHHHHHHHHHHHCCCCCCHHHHCC Q ss_conf 9999971989998799975898823467750235259984255430368878753220012200000001 Q gi|254780398|r 37 KKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALK 106 (284) Q Consensus 37 ~~iv~~~~~~~~~~VlEIGpG~G~LT~~Ll~~~~~~v~aiEiD~~~~~~l~~~~~~~~~~~~ii~~Dal~ 106 (284) ..+...+....++.|||||||+|.++..|+++++ +|+++|+++.+++.+++........+.....+... T Consensus 42 ~~~l~~l~~~~~~~vLDiGcG~G~~~~~l~~~g~-~v~gvD~S~~~i~~A~~~~~~~~~~~~~~~~~~~~ 110 (227) T 3e8s_A 42 QAILLAILGRQPERVLDLGCGEGWLLRALADRGI-EAVGVDGDRTLVDAARAAGAGEVHLASYAQLAEAK 110 (227) T ss_dssp HHHHHHHHHTCCSEEEEETCTTCHHHHHHHTTTC-EEEEEESCHHHHHHHHHTCSSCEEECCHHHHHTTC T ss_pred HHHHHHHCCCCCCEEEEECCCCCHHHHHHHHCCC-EEEEECCCHHHHHHHHHHCCCCCCEEEEEECCCCC T ss_conf 9999971558959899976898399999997699-69998681788999998601465124433011112 No 126 >3ocj_A Putative exported protein; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; HET: PLM; 1.39A {Bordetella parapertussis} Probab=98.21 E-value=1.2e-06 Score=60.33 Aligned_cols=79 Identities=14% Similarity=0.026 Sum_probs=60.3 Q ss_pred CCCCCEEEEECCCCCHHHHHHHHC-CCC-EEEEECCCCCCHHHHHHHHHH--HHCCCCCCHHHHCCCCHHHHCCCCCCEE Q ss_conf 899987999758988234677502-352-599842554303688787532--2001220000000143155213322201 Q gi|254780398|r 45 SLDGITVIEIGAGPGNLTQMLLTL-GAR-KVIVIEKDQQFFPILKDISSQ--HPNRLEIIQDDALKVDFEKFFNISSPIR 120 (284) Q Consensus 45 ~~~~~~VlEIGpG~G~LT~~Ll~~-~~~-~v~aiEiD~~~~~~l~~~~~~--~~~~~~ii~~Dal~~d~~~~~~~~~~~~ 120 (284) +.++..||+||||+|..+..|+.. ++. +|++|++++.+++.++++... ..++++++++|+...+.+.- ... T Consensus 116 l~~g~~vLDvGcG~G~~~~~l~~~~~p~~~v~gvD~S~~~l~~A~~~~~~~~l~~~~~~~~~d~~~l~~~~~-----~d~ 190 (305) T 3ocj_A 116 LRPGCVVASVPCGWMSELLALDYSACPGVQLVGIDYDPEALDGATRLAAGHALAGQITLHRQDAWKLDTREG-----YDL 190 (305) T ss_dssp CCTTCEEEETTCTTCHHHHTSCCTTCTTCEEEEEESCHHHHHHHHHHHTTSTTGGGEEEEECCGGGCCCCSC-----EEE T ss_pred CCCCCEEEEECCCCHHHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHCCCCC-----CCE T ss_conf 999599999447476999999997189958999979888999997530220123222332000887424664-----017 Q ss_pred EEECCCHH Q ss_conf 12023224 Q gi|254780398|r 121 IIANLPYN 128 (284) Q Consensus 121 vvgNLPYn 128 (284) ||+|-++. T Consensus 191 iv~~~~~~ 198 (305) T 3ocj_A 191 LTSNGLNI 198 (305) T ss_dssp EECCSSGG T ss_pred EEEECCCC T ss_conf 99813421 No 127 >3id6_C Fibrillarin-like rRNA/TRNA 2'-O- methyltransferase; C/D guide RNA, 2'-O-methylation, coiled-coil, RNA-binding, rRNA processing; HET: SAM; 2.60A {Sulfolobus solfataricus} PDB: 3id5_B* Probab=98.19 E-value=3.3e-06 Score=57.54 Aligned_cols=93 Identities=15% Similarity=0.111 Sum_probs=61.2 Q ss_pred HHCCCCCCCEEEEECCCCCHHHHHHHHC-CC-CEEEEECCCCCCHHHHHHHHHHHHCCCCCCHHHHCCCCHHHHCCCCCC Q ss_conf 9719899987999758988234677502-35-259984255430368878753220012200000001431552133222 Q gi|254780398|r 41 ESSGSLDGITVIEIGAGPGNLTQMLLTL-GA-RKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSP 118 (284) Q Consensus 41 ~~~~~~~~~~VlEIGpG~G~LT~~Ll~~-~~-~~v~aiEiD~~~~~~l~~~~~~~~~~~~ii~~Dal~~d~~~~~~~~~~ 118 (284) +.+.+.+|+.|||+|||+|..+..|++. ++ ..|+|||+.++++..+++.....+| +..+..|+.......+.. ..- T Consensus 70 ~~~~lkpG~~VLdLG~G~G~~~~~la~~Vg~~G~V~aVD~s~~~l~~a~~~a~~~~n-~~~v~~d~~~~~~~~~~~-~~v 147 (232) T 3id6_C 70 KTNPIRKGTKVLYLGAASGTTISHVSDIIELNGKAYGVEFSPRVVRELLLVAQRRPN-IFPLLADARFPQSYKSVV-ENV 147 (232) T ss_dssp SCCSCCTTCEEEEETCTTSHHHHHHHHHHTTTSEEEEEECCHHHHHHHHHHHHHCTT-EEEEECCTTCGGGTTTTC-CCE T ss_pred HHCCCCCCCEEEEECCCCCHHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHCCC-CCCEEECCCCHHHCCCCC-CEE T ss_conf 305889999999967718899999999715687699997999999999976565467-763010146754537777-369 Q ss_pred EEEEECCCHHHHHHHHH Q ss_conf 01120232246788999 Q gi|254780398|r 119 IRIIANLPYNIGTRLLF 135 (284) Q Consensus 119 ~~vvgNLPYnIss~Il~ 135 (284) ..++..+.+.-..++++ T Consensus 148 d~i~~~~~~~~~~~~~l 164 (232) T 3id6_C 148 DVLYVDIAQPDQTDIAI 164 (232) T ss_dssp EEEEECCCCTTHHHHHH T ss_pred EEEEEECCCCCHHHHHH T ss_conf 99998525732199999 No 128 >1yzh_A TRNA (guanine-N(7)-)-methyltransferase; alpha-beta-alpha sandwich, S- adenosylmethionine-dependent, structural genomics, PSI; 2.02A {Streptococcus pneumoniae} SCOP: c.66.1.53 Probab=98.19 E-value=2.9e-06 Score=57.91 Aligned_cols=79 Identities=15% Similarity=0.230 Sum_probs=58.2 Q ss_pred CCCEEEEECCCCCHHHHHHHHCCCC-EEEEECCCCCCHHHHHHHHHHH-HCCCCCCHHHHCCCCHHHHCCCCCCEEEEEC Q ss_conf 9987999758988234677502352-5998425543036887875322-0012200000001431552133222011202 Q gi|254780398|r 47 DGITVIEIGAGPGNLTQMLLTLGAR-KVIVIEKDQQFFPILKDISSQH-PNRLEIIQDDALKVDFEKFFNISSPIRIIAN 124 (284) Q Consensus 47 ~~~~VlEIGpG~G~LT~~Ll~~~~~-~v~aiEiD~~~~~~l~~~~~~~-~~~~~ii~~Dal~~d~~~~~~~~~~~~vvgN 124 (284) .+..|||||||.|..+..+++..+. .+++||+....+..+.+..... -.++.++++||..+ .+....+.-..|.-| T Consensus 41 ~~p~iLEIGcG~G~~~~~lA~~~P~~~~igiD~~~~~v~~a~~~~~~~~l~Nv~~~~~da~~l--~~~~~~~~~d~v~~~ 118 (214) T 1yzh_A 41 DNPIHVEVGSGKGAFVSGMAKQNPDINYIGIDIQKSVLSYALDKVLEVGVPNIKLLWVDGSDL--TDYFEDGEIDRLYLN 118 (214) T ss_dssp CCCEEEEESCTTSHHHHHHHHHCTTSEEEEEESCHHHHHHHHHHHHHHCCSSEEEEECCSSCG--GGTSCTTCCSEEEEE T ss_pred CCCCEEEEEEECCHHHHHHHHHCCCCCEEEEECCHHHHHHHHHHHHHHCCCCEEEEECCHHHH--HHHCCCCEEEEEECC T ss_conf 997189994108699999999789997797407788899999999983998644552369887--421257743111124 Q ss_pred CCH Q ss_conf 322 Q gi|254780398|r 125 LPY 127 (284) Q Consensus 125 LPY 127 (284) .|- T Consensus 119 fPd 121 (214) T 1yzh_A 119 FSD 121 (214) T ss_dssp SCC T ss_pred CCC T ss_conf 678 No 129 >2yx1_A Hypothetical protein MJ0883; methyl transferase, tRNA modification enzyme; HET: SFG; 2.20A {Methanocaldococcus jannaschii} PDB: 2zzn_A* 2zzm_A* Probab=98.17 E-value=2.2e-06 Score=58.61 Aligned_cols=90 Identities=21% Similarity=0.252 Sum_probs=67.1 Q ss_pred HHHHHHCCCCCCCEEEEECCCCCHHHHHHHHCCCCEEEEECCCCCCHHHHHHHHHH--HHCCCCCCHHHHCCCCHHHHCC Q ss_conf 99999719899987999758988234677502352599842554303688787532--2001220000000143155213 Q gi|254780398|r 37 KKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQ--HPNRLEIIQDDALKVDFEKFFN 114 (284) Q Consensus 37 ~~iv~~~~~~~~~~VlEIGpG~G~LT~~Ll~~~~~~v~aiEiD~~~~~~l~~~~~~--~~~~~~ii~~Dal~~d~~~~~~ 114 (284) .++++.. .+++.||+.|+|.|.++.+++ ++++|+|+|+++..++.+++.... ..++++++++|+..++. T Consensus 187 ~ri~~~~--~~~~~vlD~f~g~G~~~i~~~--~~~~v~a~d~n~~a~~~~~~N~~~N~~~~~v~~~~~D~~~~~~----- 257 (336) T 2yx1_A 187 ARIMKKV--SLNDVVVDMFAGVGPFSIACK--NAKKIYAIDINPHAIELLKKNIKLNKLEHKIIPILSDVREVDV----- 257 (336) T ss_dssp HHHHHHC--CTTCEEEETTCTTSHHHHHTT--TSSEEEEEESCHHHHHHHHHHHHHTTCTTTEEEEESCGGGCCC----- T ss_pred HHHHHHC--CCCCEEEEECCCCCHHHHHCC--CCCEEEEEECCHHHHHHHHHHHHHHCCCCCEEEEECCHHHCCC----- T ss_conf 8766411--789889996576467665313--5516999979999999999999982998758999575345456----- Q ss_pred CCCCEEEEECCCHHHHHHHHHHHH Q ss_conf 322201120232246788999998 Q gi|254780398|r 115 ISSPIRIIANLPYNIGTRLLFNWI 138 (284) Q Consensus 115 ~~~~~~vvgNLPYnIss~Il~~ll 138 (284) ..-+|+.|+|+.- ..++...+ T Consensus 258 --~~D~Ii~~~P~~~-~~~l~~a~ 278 (336) T 2yx1_A 258 --KGNRVIMNLPKFA-HKFIDKAL 278 (336) T ss_dssp --CEEEEEECCTTTG-GGGHHHHH T ss_pred --CCCEEEECCHHHH-HHHHHHHH T ss_conf --8749996580466-99999999 No 130 >1ri5_A MRNA capping enzyme; methyltransferase, M7G, messenger RNA CAP, structural genomics, PSI, protein structure initiative; 2.10A {Encephalitozoon cuniculi} SCOP: c.66.1.34 PDB: 1ri2_A* 1ri3_A* 1ri1_A* 1ri4_A 1z3c_A* 2hv9_A* Probab=98.17 E-value=2.7e-06 Score=58.16 Aligned_cols=66 Identities=11% Similarity=0.074 Sum_probs=54.2 Q ss_pred CCCCCCEEEEECCCCCHHHHHHHHCCCCEEEEECCCCCCHHHHHHHHHHHH--CCCCCCHHHHCCCCH Q ss_conf 989998799975898823467750235259984255430368878753220--012200000001431 Q gi|254780398|r 44 GSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQHP--NRLEIIQDDALKVDF 109 (284) Q Consensus 44 ~~~~~~~VlEIGpG~G~LT~~Ll~~~~~~v~aiEiD~~~~~~l~~~~~~~~--~~~~ii~~Dal~~d~ 109 (284) ...+++.|||+|||.|..+..+++.+..+|++|++++.+++.+++...... .++.++.+|+...++ T Consensus 61 ~~~~~~~VLDlGCG~G~~~~~~~~~~~~~v~GiD~S~~~l~~a~~r~~~~~~~~~~~f~~~d~~~~~~ 128 (298) T 1ri5_A 61 YTKRGDSVLDLGCGKGGDLLKYERAGIGEYYGVDIAEVSINDARVRARNMKRRFKVFFRAQDSYGRHM 128 (298) T ss_dssp HCCTTCEEEEETCTTTTTHHHHHHHTCSEEEEEESCHHHHHHHHHHHHTSCCSSEEEEEESCTTTSCC T ss_pred HCCCCCEEEEECCCCCHHHHHHHHCCCCEEEEECCCHHHHHHHHHHHHHCCCCCCEEEEECCHHHHCC T ss_conf 48995989996370878999999669985887589999999999998752887523778645655210 No 131 >2vdv_E TRNA (guanine-N(7)-)-methyltransferase; S-adenosyl-L-methionine, phosphorylation, M7G, spout MT, tRNA processing; HET: SAM; 2.30A {Saccharomyces cerevisiae} PDB: 2vdu_E Probab=98.16 E-value=3.7e-06 Score=57.29 Aligned_cols=80 Identities=19% Similarity=0.302 Sum_probs=56.1 Q ss_pred CCCCCEEEEECCCCCHHHHHHHHCCCC-EEEEECCCCCCHHHHHHHH----------HHHHCCCCCCHHHHCCCCHHHHC Q ss_conf 899987999758988234677502352-5998425543036887875----------32200122000000014315521 Q gi|254780398|r 45 SLDGITVIEIGAGPGNLTQMLLTLGAR-KVIVIEKDQQFFPILKDIS----------SQHPNRLEIIQDDALKVDFEKFF 113 (284) Q Consensus 45 ~~~~~~VlEIGpG~G~LT~~Ll~~~~~-~v~aiEiD~~~~~~l~~~~----------~~~~~~~~ii~~Dal~~d~~~~~ 113 (284) ..+.-.|||||||.|..+..+++..+. .+++||++...+..+.+.. ...+ |+.++.+||.++ +++++ T Consensus 47 ~~~~p~iLeIGcG~G~~l~~lA~~~p~~~~iGiEi~~~~v~~~~~ri~~~~~~~a~~~~l~-Ni~~~~~da~~~-l~~~~ 124 (246) T 2vdv_E 47 MTKKVTIADIGCGFGGLMIDLSPAFPEDLILGMEIRVQVTNYVEDRIIALRNNTASKHGFQ-NINVLRGNAMKF-LPNFF 124 (246) T ss_dssp BSCCEEEEEETCTTSHHHHHHHHHSTTSEEEEEESCHHHHHHHHHHHHHHHHTC-CCSTTT-TEEEEECCTTSC-GGGTS T ss_pred CCCCCEEEEECCCCCHHHHHHHHHCCCCCEEEEECCHHHHHHHHHHHHHHHHHHHHHCCCC-EEEEEECCHHHH-HHHHC T ss_conf 6899879998268998999999868987589885036899999999999987478774987-199993734888-88751 Q ss_pred CCCCCEEEEECCC Q ss_conf 3322201120232 Q gi|254780398|r 114 NISSPIRIIANLP 126 (284) Q Consensus 114 ~~~~~~~vvgNLP 126 (284) ..++--.|.-|-| T Consensus 125 ~~~s~d~v~i~FP 137 (246) T 2vdv_E 125 EKGQLSKMFFCFP 137 (246) T ss_dssp CTTCEEEEEEESC T ss_pred CCCCCCEEEEECC T ss_conf 4677673489889 No 132 >3ggd_A SAM-dependent methyltransferase; YP_325210.1, structural genomics, joint center for structural genomics, JCSG; HET: SAH; 2.11A {Anabaena variabilis atcc 29413} Probab=98.16 E-value=1.1e-06 Score=60.62 Aligned_cols=64 Identities=16% Similarity=0.189 Sum_probs=53.5 Q ss_pred CCCCCEEEEECCCCCHHHHHHHHCCCCEEEEECCCCCCHHHHHHHHHHHHCCCCCCHHHHCCCCHHH Q ss_conf 8999879997589882346775023525998425543036887875322001220000000143155 Q gi|254780398|r 45 SLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEK 111 (284) Q Consensus 45 ~~~~~~VlEIGpG~G~LT~~Ll~~~~~~v~aiEiD~~~~~~l~~~~~~~~~~~~ii~~Dal~~d~~~ 111 (284) ..++..|||||||.|.+|..|+++++ +|++||+++.+++.+++.... .++++.++|+....... T Consensus 54 ~~~~~~vLDvGCG~G~~~~~la~~g~-~v~gvD~s~~~i~~Ar~~~~~--~~~~~~~~d~~~~~~~~ 117 (245) T 3ggd_A 54 FNPELPLIDFACGNGTQTKFLSQFFP-RVIGLDVSKSALEIAAKENTA--ANISYRLLDGLVPEQAA 117 (245) T ss_dssp SCTTSCEEEETCTTSHHHHHHHHHSS-CEEEEESCHHHHHHHHHHSCC--TTEEEEECCTTCHHHHH T ss_pred CCCCCEEEEECCCCCHHHHHHHCCCC-EEEEEECCHHHHHHHHHHCCC--CCEEEEEEECCCCCCCC T ss_conf 69998589975879787999763784-599850999999999986746--75069995013653222 No 133 >1wxx_A TT1595, hypothetical protein TTHA1280; thermus thermophillus, methyltransferase, adoMet, structural genomics; 1.80A {Thermus thermophilus HB8} SCOP: b.122.1.9 c.66.1.51 PDB: 1wxw_A 2cww_A* Probab=98.16 E-value=1.5e-06 Score=59.74 Aligned_cols=101 Identities=12% Similarity=0.149 Sum_probs=73.4 Q ss_pred CCC--CCCCHHHHHHHHHHCCCCCCCEEEEECCCCCHHHHHHHHCCCCEEEEECCCCCCHHHHHHHHHHHH-CCCCCCHH Q ss_conf 841--123989999999971989998799975898823467750235259984255430368878753220-01220000 Q gi|254780398|r 26 GQN--FLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQHP-NRLEIIQD 102 (284) Q Consensus 26 GQn--FL~d~~i~~~iv~~~~~~~~~~VlEIGpG~G~LT~~Ll~~~~~~v~aiEiD~~~~~~l~~~~~~~~-~~~~ii~~ 102 (284) ||+ |..|....+..++. .+++.||++|+|+|.+|.+++.. +.+|+++|+++..++.+++....+. .+++++++ T Consensus 189 g~ktG~flDqr~~r~~~~~---~~g~~VLDl~~g~G~~s~~~a~~-~~~V~~vD~s~~al~~a~~n~~~ng~~~~~~~~~ 264 (382) T 1wxx_A 189 GQKTGAYLDQRENRLYMER---FRGERALDVFSYAGGFALHLALG-FREVVAVDSSAEALRRAEENARLNGLGNVRVLEA 264 (382) T ss_dssp TSCCCCCGGGHHHHHHGGG---CCEEEEEEETCTTTHHHHHHHHH-EEEEEEEESCHHHHHHHHHHHHHTTCTTEEEEES T ss_pred CCCCCCHHHHHHHHHHHHH---HCCCEEEECCCCCCHHHHHHHHC-CCCEEECCCCHHHHHHHHHHHHHCCCCCCEEEEC T ss_conf 3556721566665889876---26980410467787799999846-7726720463999999999999728688667860 Q ss_pred HHCCCCHHHHCCCC-CCEEEEECCCHHHHH Q ss_conf 00014315521332-220112023224678 Q gi|254780398|r 103 DALKVDFEKFFNIS-SPIRIIANLPYNIGT 131 (284) Q Consensus 103 Dal~~d~~~~~~~~-~~~~vvgNLPYnIss 131 (284) |+.++- ..+...+ ..-.||-+.|+...+ T Consensus 265 D~~~~l-~~~~~~~~~fD~VilDpP~~~~~ 293 (382) T 1wxx_A 265 NAFDLL-RRLEKEGERFDLVVLDPPAFAKG 293 (382) T ss_dssp CHHHHH-HHHHHTTCCEEEEEECCCCSCCS T ss_pred CHHHHH-HHHHHHCCCCCEEEECCCCCCCC T ss_conf 177777-77786267998699827211589 No 134 >1xva_A Glycine N-methyltransferase; HET: SAM; 2.20A {Escherichia coli} SCOP: c.66.1.5 PDB: 1d2c_A 1kia_A* 1nbh_A* 1bhj_A* 2idj_A 2idk_A* 1d2g_A 1d2h_A* 1nbi_A* 1r8x_A 1r8y_A 1r74_A* 2azt_A* Probab=98.14 E-value=2.4e-06 Score=58.41 Aligned_cols=73 Identities=14% Similarity=0.143 Sum_probs=52.0 Q ss_pred HHHHHHHHCCCCCCCEEEEECCCCCHHHHHHHHCCCCEEEEECCCCCCHHHHHHHHHHHHC-----CCCCCHHHHCCCC Q ss_conf 9999999719899987999758988234677502352599842554303688787532200-----1220000000143 Q gi|254780398|r 35 ILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQHPN-----RLEIIQDDALKVD 108 (284) Q Consensus 35 i~~~iv~~~~~~~~~~VlEIGpG~G~LT~~Ll~~~~~~v~aiEiD~~~~~~l~~~~~~~~~-----~~~ii~~Dal~~d 108 (284) ..+.+.+.+....+..|||||||+|.+|..|++.++ +|+++|+.+.+++.+++....... +..+..+|++..+ T Consensus 44 ~~~~~~~~l~~~~~~~vLDiGcG~G~~~~~la~~g~-~v~gvD~s~~ml~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~ 121 (292) T 1xva_A 44 YKAWLLGLLRQHGCHRVLDVACGTGVDSIMLVEEGF-SVTSVDASDKMLKYALKERWNRRKEPAFDKWVIEEANWLTLD 121 (292) T ss_dssp HHHHHHHHHHHTTCCEEEESSCTTSHHHHHHHHTTC-EEEEEESCHHHHHHHHHHHHHTTTSHHHHTCEEEECCGGGHH T ss_pred HHHHHHHHHHHCCCCEEEEECCCCCHHHHHHHHCCC-EEEEEECCHHHHHHHHHHHHHCCCCCCCCEEEEEECCCCCCC T ss_conf 999999964131849999904788499999997799-699998999999999999986444656313566411101244 No 135 >3jwh_A HEN1; methyltransferase; HET: SAH; 2.20A {Anabaena variabilis} PDB: 3jwj_A Probab=98.12 E-value=4.7e-06 Score=56.60 Aligned_cols=79 Identities=19% Similarity=0.251 Sum_probs=60.4 Q ss_pred HHHHHHHHHHCCCCCCCEEEEECCCCCHHHHHHHHCCC-CEEEEECCCCCCHHHHHHHHHHH------HCCCCCCHHHHC Q ss_conf 89999999971989998799975898823467750235-25998425543036887875322------001220000000 Q gi|254780398|r 33 LNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGA-RKVIVIEKDQQFFPILKDISSQH------PNRLEIIQDDAL 105 (284) Q Consensus 33 ~~i~~~iv~~~~~~~~~~VlEIGpG~G~LT~~Ll~~~~-~~v~aiEiD~~~~~~l~~~~~~~------~~~~~ii~~Dal 105 (284) +.-.+.+.+.+.....+.|||||||+|.++..|++.++ .+|+++|+++.+++.+++.+... ..++....+|.. T Consensus 15 ~~r~~~v~~~l~~~~~~rVLDvGcG~G~~~~~l~~~~~~~~v~gvD~s~~~l~~A~~~~~~~~~~~~~~~~~~~~~~~~~ 94 (217) T 3jwh_A 15 QQRMNGVVAALKQSNARRVIDLGCGQGNLLKILLKDSFFEQITGVDVSYRSLEIAQERLDRLRLPRNQWERLQLIQGALT 94 (217) T ss_dssp HHHHHHHHHHHHHTTCCEEEEETCTTCHHHHHHHHCTTCSEEEEEESCHHHHHHHHHHHTTCCCCHHHHTTEEEEECCTT T ss_pred HHHHHHHHHHHHCCCCCEEEEEECCCCHHHHHHHHHCCCCEEECCCCCHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCHH T ss_conf 99999999973321839899981888799999998476522521038999999999988762453112222100126643 Q ss_pred CCCHHH Q ss_conf 143155 Q gi|254780398|r 106 KVDFEK 111 (284) Q Consensus 106 ~~d~~~ 111 (284) ..+++. T Consensus 95 ~~~~~~ 100 (217) T 3jwh_A 95 YQDKRF 100 (217) T ss_dssp SCCGGG T ss_pred HCHHCC T ss_conf 440004 No 136 >3c3p_A Methyltransferase; NP_951602.1, structural genomics, joint center for structural genomics, JCSG, protein structure initiative; 1.90A {Geobacter sulfurreducens pca} Probab=98.12 E-value=2.1e-06 Score=58.75 Aligned_cols=79 Identities=15% Similarity=0.170 Sum_probs=59.9 Q ss_pred CCCHHHHHHHHHHCCCCCCCEEEEECCCCCHHHHHHHHCCC--CEEEEECCCCCCHHHHHHHHHH--HHCCCCCCHHHHC Q ss_conf 23989999999971989998799975898823467750235--2599842554303688787532--2001220000000 Q gi|254780398|r 30 LLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGA--RKVIVIEKDQQFFPILKDISSQ--HPNRLEIIQDDAL 105 (284) Q Consensus 30 L~d~~i~~~iv~~~~~~~~~~VlEIGpG~G~LT~~Ll~~~~--~~v~aiEiD~~~~~~l~~~~~~--~~~~~~ii~~Dal 105 (284) .+++...+-+...+.......|||||+|.|.-|..+++.-+ .+|+++|+|+.+++.+++.+.. ..+++++++||++ T Consensus 39 ~i~~~~g~~L~~L~~~~~~~~ILEiGtg~G~st~~la~~~~~~g~v~~id~~~~~~~~ar~~~~~~g~~~~i~~~~gda~ 118 (210) T 3c3p_A 39 IVDRQTGRLLYLLARIKQPQLVVVPGDGLGCASWWFARAISISSRVVMIDPDRDNVEHARRMLHDNGLIDRVELQVGDPL 118 (210) T ss_dssp CCCHHHHHHHHHHHHHHCCSEEEEESCGGGHHHHHHHTTSCTTCEEEEEESCHHHHHHHHHHHHHHSGGGGEEEEESCHH T ss_pred CCCHHHHHHHHHHHHHHCCCEEEEEECCCHHHHHHHHHHCCCCEEEEEEECCCCHHHHHHHHHHHCCCCCEEEEEECCHH T ss_conf 78989999999998856809899950814399999999755681999997751037899987987298732678613454 Q ss_pred CCC Q ss_conf 143 Q gi|254780398|r 106 KVD 108 (284) Q Consensus 106 ~~d 108 (284) ++. T Consensus 119 ~~~ 121 (210) T 3c3p_A 119 GIA 121 (210) T ss_dssp HHH T ss_pred HCC T ss_conf 302 No 137 >3m33_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, MCSG, midwest center for structural genomics; 2.19A {Deinococcus radiodurans} Probab=98.11 E-value=9.6e-06 Score=54.69 Aligned_cols=94 Identities=11% Similarity=0.105 Sum_probs=59.9 Q ss_pred CCCCCHHHHHHHHHCCC-CC--CCCCCCCCCCCHHHHHH--HHHHCCCCCCCEEEEECCCCCHHHHHHHHCCCCEEEEEC Q ss_conf 78884479999998189-84--33658411239899999--999719899987999758988234677502352599842 Q gi|254780398|r 3 MNNKSHSLKTILSHYKI-IP--KKYMGQNFLLDLNILKK--IAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIE 77 (284) Q Consensus 3 ~~~~~~~i~~ll~~~~~-~p--~k~lGQnFL~d~~i~~~--iv~~~~~~~~~~VlEIGpG~G~LT~~Ll~~~~~~v~aiE 77 (284) ||....+--.+.+.++- +. .+.+. --++..... +++. +.++..|||||||+|.+|..|++.++ +|++++ T Consensus 4 ~~~~~~~~d~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~l~~~--l~pg~rVLDvGCGtG~~a~~La~~g~-~V~giD 77 (226) T 3m33_A 4 MNHSRESYDRLARELGGYRHPWARVLS---GPDPELTFDLWLSRL--LTPQTRVLEAGCGHGPDAARFGPQAA-RWAAYD 77 (226) T ss_dssp ----CHHHHHHHHHHTTTSCCSCCEES---SSCTTHHHHHHHHHH--CCTTCEEEEESCTTSHHHHHHGGGSS-EEEEEE T ss_pred CHHHHHHHHHHHHHHCCCCCHHHHHCC---CCCHHHHHHHHHHHH--CCCCCEEEEECCCCCHHHHHHHCCCC-EEEECC T ss_conf 236789999999872665353667505---988679999999951--89999799988465864577751686-899657 Q ss_pred CCCCCHHHHHHHHHHHHCCCCCCHHHHCC Q ss_conf 55430368878753220012200000001 Q gi|254780398|r 78 KDQQFFPILKDISSQHPNRLEIIQDDALK 106 (284) Q Consensus 78 iD~~~~~~l~~~~~~~~~~~~ii~~Dal~ 106 (284) +++.+++.+++.... ..++++|+.. T Consensus 78 ~S~~mi~~Ar~~~~~----~~~~~~~~~~ 102 (226) T 3m33_A 78 FSPELLKLARANAPH----ADVYEWNGKG 102 (226) T ss_dssp SCHHHHHHHHHHCTT----SEEEECCSCS T ss_pred CCHHHHHHHHHHCCC----CCEEEEECCC T ss_conf 999999999985899----9789974666 No 138 >3lcv_B Sisomicin-gentamicin resistance methylase SGM; antibiotic resistance, methyltransferase, transferase; HET: SAM; 2.00A {Micromonospora zionensis} PDB: 3lcu_A* Probab=98.11 E-value=1.6e-06 Score=59.52 Aligned_cols=65 Identities=14% Similarity=0.099 Sum_probs=54.2 Q ss_pred CCCCCEEEEECCCCCHHHHHHHHCCCC-EEEEECCCCCCHHHHHHHHHHHHCCCCCCHHHHCCCCH Q ss_conf 899987999758988234677502352-59984255430368878753220012200000001431 Q gi|254780398|r 45 SLDGITVIEIGAGPGNLTQMLLTLGAR-KVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDF 109 (284) Q Consensus 45 ~~~~~~VlEIGpG~G~LT~~Ll~~~~~-~v~aiEiD~~~~~~l~~~~~~~~~~~~ii~~Dal~~d~ 109 (284) +.++..|||||||.|.+|..+++.++. .|+++|+++.+++.+++.+....-+++...+|+++... T Consensus 130 ~~~~~~vlD~GcG~G~~~~~l~~~~~~~~v~g~D~s~~~i~~a~~~~~~~~~~~~~~~~d~~~~~~ 195 (281) T 3lcv_B 130 LPRPNTLRDLACGLNPLAAPWMGLPAETVYIASDIDARLVGFVDEALTRLNVPHRTNVADLLEDRL 195 (281) T ss_dssp SCCCSEEEETTCTTGGGCCTTTTCCTTCEEEEEESBHHHHHHHHHHHHHTTCCEEEEECCTTTSCC T ss_pred CCCCCEEEEECCCCCHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHCCCCEEEEEECHHHHCC T ss_conf 899986998389888899999974997749996599999999999998668873899813544076 No 139 >1x19_A CRTF-related protein; methyltransferase, bacteriochllochlorophyll, BCHU, SAM, SAH, S-adenosylmethyonine, S-adenosylhomocysteine, ADO-Met; 2.27A {Chlorobium tepidum tls} PDB: 1x1a_A* 1x1b_A* 1x1c_A* 1x1d_A* Probab=98.11 E-value=2.1e-05 Score=52.55 Aligned_cols=92 Identities=12% Similarity=0.232 Sum_probs=67.1 Q ss_pred HHHHHHHHHCCCCCCCEEEEECCCCCHHHHHHHHCCCC-EEEEECCCCCCHHHHHHHHHHH--HCCCCCCHHHHCCCCHH Q ss_conf 99999999719899987999758988234677502352-5998425543036887875322--00122000000014315 Q gi|254780398|r 34 NILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGAR-KVIVIEKDQQFFPILKDISSQH--PNRLEIIQDDALKVDFE 110 (284) Q Consensus 34 ~i~~~iv~~~~~~~~~~VlEIGpG~G~LT~~Ll~~~~~-~v~aiEiD~~~~~~l~~~~~~~--~~~~~ii~~Dal~~d~~ 110 (284) ..+..+++..+......|+|||+|.|.++..++++.+. +++++++ +..++..++..... .++++++.+|+++-+++ T Consensus 177 ~~~~~~~~~~~~~~~~~vlDiG~G~G~~~~~l~~~~p~~~~~~~Dl-p~~~~~a~~~~~~~~l~~rv~~~~gD~~~~~~p 255 (359) T 1x19_A 177 FAIQLLLEEAKLDGVKKMIDVGGGIGDISAAMLKHFPELDSTILNL-PGAIDLVNENAAEKGVADRMRGIAVDIYKESYP 255 (359) T ss_dssp HHHHHHHHHCCCTTCCEEEEESCTTCHHHHHHHHHCTTCEEEEEEC-GGGHHHHHHHHHHTTCTTTEEEEECCTTTSCCC T ss_pred HHHHHHHHHCCCCCCCEEEECCCCCCHHHHHHHHHCCCEEEEEECC-HHHHHHHHHHHHHCCCCCCCEEEECCHHHCCCC T ss_conf 9999999847876787799767989799999998399228998166-888999998667507763452783457763578 Q ss_pred HHCCCCCCEEEEECCCHHHHH Q ss_conf 521332220112023224678 Q gi|254780398|r 111 KFFNISSPIRIIANLPYNIGT 131 (284) Q Consensus 111 ~~~~~~~~~~vvgNLPYnIss 131 (284) +. ...+.+|.=++.+. T Consensus 256 ~~-----D~v~~~~vLh~~~d 271 (359) T 1x19_A 256 EA-----DAVLFCRILYSANE 271 (359) T ss_dssp CC-----SEEEEESCGGGSCH T ss_pred CC-----CEEEEEEECCCCCH T ss_conf 76-----50455630115998 No 140 >1uwv_A 23S rRNA (uracil-5-)-methyltransferase RUMA; RNA modification, iron-sulfur cluster, RNA processing; 1.95A {Escherichia coli} SCOP: b.40.4.12 c.66.1.40 PDB: 2bh2_A* Probab=98.10 E-value=9e-06 Score=54.88 Aligned_cols=160 Identities=11% Similarity=0.088 Sum_probs=102.4 Q ss_pred CCCHHHHHHHHHHCCCCCCCEEEEECCCCCHHHHHHHHCCCCEEEEECCCCCCHHHHHHHHHHHH-CCCCCCHHHHCCCC Q ss_conf 23989999999971989998799975898823467750235259984255430368878753220-01220000000143 Q gi|254780398|r 30 LLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQHP-NRLEIIQDDALKVD 108 (284) Q Consensus 30 L~d~~i~~~iv~~~~~~~~~~VlEIGpG~G~LT~~Ll~~~~~~v~aiEiD~~~~~~l~~~~~~~~-~~~~ii~~Dal~~d 108 (284) -..+.+.+.+.+.++..+++.|+|.-+|.|.+|..|++. +++|++||+++..++.+++....+. .+++.+++|+.+.- T Consensus 269 ~~~~~l~~~v~~~l~~~~~~~vlDLYcG~G~fsl~La~~-~~~V~gvE~~~~Av~~A~~na~~n~~~n~~f~~~~~~~~~ 347 (433) T 1uwv_A 269 GVNQKMVARALEWLDVQPEDRVLDLFCGMGNFTLPLATQ-AASVVGVEGVPALVEKGQQNARLNGLQNVTFYHENLEEDV 347 (433) T ss_dssp HHHHHHHHHHHHHHTCCTTCEEEEESCTTTTTHHHHHTT-SSEEEEEESCHHHHHHHHHHHHHTTCCSEEEEECCTTSCC T ss_pred HHHHHHHHHHHHHHCCCCCCEEEEECCCCCHHHHHHHHH-CCEEEEEECCHHHHHHHHHHHHHCCCCCEEEEECCHHHHH T ss_conf 889999999999844568877999568851777876650-5624566354999999999999849975699914756664 Q ss_pred HHHHCCCCCCEEEEECCCHHHHHHHHHHHHHHHCCCCCCCHHHHEEEHHHHHHHHHCCCH--HHHHHHHHHHCCCCCEEE Q ss_conf 155213322201120232246788999998520100000011020334478875301231--233234543201332012 Q gi|254780398|r 109 FEKFFNISSPIRIIANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNS--PHYGRLSVLTGWRTKATM 186 (284) Q Consensus 109 ~~~~~~~~~~~~vvgNLPYnIss~Il~~ll~~~~~~~~~~~~vlmvQkEvA~Rl~a~pg~--k~Yg~LSv~~q~~~~v~~ 186 (284) .........+-.||-+-|=.=....+..++... +. + ++++ -..|.| +| |..++..-|.+ T Consensus 348 ~~~~~~~~~~d~vilDPPR~G~~~~~~~l~~~~--p~---~-IvYV--------SCnP~TlaRD---l~~L~~~gy~l-- 408 (433) T 1uwv_A 348 TKQPWAKNGFDKVLLDPARAGAAGVMQQIIKLE--PI---R-IVYV--------SCNPATLARD---SEALLKAGYTI-- 408 (433) T ss_dssp SSSGGGTTCCSEEEECCCTTCCHHHHHHHHHHC--CS---E-EEEE--------ESCHHHHHHH---HHHHHHTTCEE-- T ss_pred HHHHHHCCCCCEEEECCCCCCHHHHHHHHHHCC--CC---E-EEEE--------ECCHHHHHHH---HHHHHHCCCEE-- T ss_conf 430665279998998999807099999998369--79---5-9999--------0898999989---99998789668-- Q ss_pred ECCCCCCEECCCC-CCCEEEEEECCC Q ss_conf 0001100001057-875788730125 Q gi|254780398|r 187 MFDISPHVFFPSP-KVTSTVIHFIPH 211 (284) Q Consensus 187 ~~~V~~~~F~P~P-kVdS~vi~l~pk 211 (284) ..+-+-.+||.. .|.+ |+.|++. T Consensus 409 -~~i~~~D~FP~T~HvE~-v~~l~R~ 432 (433) T 1uwv_A 409 -ARLAMLDMFPHTGHLES-MVLFSRV 432 (433) T ss_dssp -EEEEEECCSTTSSCCEE-EEEEEC- T ss_pred -EEEEEEECCCCCCEEEE-EEEEEEC T ss_conf -59999533899861899-9999976 No 141 >3dr5_A Putative O-methyltransferase; Q8NRD3, CGL1119, PF01596, CGR117, NESG, structural genomics, PSI-2, protein structure initiative; 2.25A {Corynebacterium glutamicum} Probab=98.09 E-value=4.3e-06 Score=56.84 Aligned_cols=73 Identities=16% Similarity=0.254 Sum_probs=59.1 Q ss_pred HHHHHHHHCCCCCCCEEEEECCCCCHHHHHHHHCC--CCEEEEECCCCCCHHHHHHHHHHH---HCCCCCCHHHHCCC Q ss_conf 99999997198999879997589882346775023--525998425543036887875322---00122000000014 Q gi|254780398|r 35 ILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLG--ARKVIVIEKDQQFFPILKDISSQH---PNRLEIIQDDALKV 107 (284) Q Consensus 35 i~~~iv~~~~~~~~~~VlEIGpG~G~LT~~Ll~~~--~~~v~aiEiD~~~~~~l~~~~~~~---~~~~~ii~~Dal~~ 107 (284) .+.-++..+.......|||||+|.|.-|..|++.- -.+|++||.|+.+++.+++.+... +++++++.||++++ T Consensus 44 ~l~~La~~~~~~~~~~vlEiGt~~G~stl~la~al~~~g~l~tIE~~~e~~~~Ar~~~~~ag~~~~rv~~i~gda~e~ 121 (221) T 3dr5_A 44 LLTTLAATTNGNGSTGAIAITPAAGLVGLYILNGLADNTTLTCIDPESEHQRQAKALFREAGYSPSRVRFLLSRPLDV 121 (221) T ss_dssp HHHHHHHHSCCTTCCEEEEESTTHHHHHHHHHHHSCTTSEEEEECSCHHHHHHHHHHHHHTTCCGGGEEEECSCHHHH T ss_pred HHHHHHHHHCCCCCCEEEEECCCHHHHHHHHHHHCCCCCEEEEEECCHHHHHHHHHHHHHCCCCCCEEEEECCCHHHH T ss_conf 999999985123899899972805799999998479997899998999999999999996688762467732778998 No 142 >3h2b_A SAM-dependent methyltransferase; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; HET: SAH; 2.00A {Corynebacterium glutamicum atcc 13032} Probab=98.09 E-value=2e-06 Score=58.99 Aligned_cols=78 Identities=14% Similarity=0.268 Sum_probs=58.3 Q ss_pred CCCCCCC---CCHHHHHHHHHHCCCCCCCEEEEECCCCCHHHHHHHHCCCCEEEEECCCCCCHHHHHHHHHHHHCCCCCC Q ss_conf 6584112---3989999999971989998799975898823467750235259984255430368878753220012200 Q gi|254780398|r 24 YMGQNFL---LDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQHPNRLEII 100 (284) Q Consensus 24 ~lGQnFL---~d~~i~~~iv~~~~~~~~~~VlEIGpG~G~LT~~Ll~~~~~~v~aiEiD~~~~~~l~~~~~~~~~~~~ii 100 (284) .+|..+= -|..++....... +..|||||||+|.++..+++++. +|+++|+.+.+++.+++... +++++ T Consensus 19 ~~~~~~~~~~~~r~~i~~~~~~~----~grVLDiGcG~G~~~~~la~~g~-~v~gvD~S~~~l~~ar~~~~----~~~~~ 89 (203) T 3h2b_A 19 LLGTVISAEDPDRVLIEPWATGV----DGVILDVGSGTGRWTGHLASLGH-QIEGLEPATRLVELARQTHP----SVTFH 89 (203) T ss_dssp HTCSSCCTTCTTHHHHHHHHHHC----CSCEEEETCTTCHHHHHHHHTTC-CEEEECCCHHHHHHHHHHCT----TSEEE T ss_pred HHCCCCCCCCCCHHHHHHHCCCC----CCCEEEECCCCCHHHHHHHHCCC-EEEEEECCHHHHHHHHHCCC----CCEEE T ss_conf 84552488864399999851589----98499973788799999997799-69999697889999974488----73499 Q ss_pred HHHHCCCCHH Q ss_conf 0000014315 Q gi|254780398|r 101 QDDALKVDFE 110 (284) Q Consensus 101 ~~Dal~~d~~ 110 (284) ++|+.+++.+ T Consensus 90 ~~d~~~l~~~ 99 (203) T 3h2b_A 90 HGTITDLSDS 99 (203) T ss_dssp CCCGGGGGGS T ss_pred ECCCCCCCCC T ss_conf 8621012234 No 143 >2fca_A TRNA (guanine-N(7)-)-methyltransferase; 2.10A {Bacillus subtilis} SCOP: c.66.1.53 Probab=98.07 E-value=7.4e-06 Score=55.39 Aligned_cols=61 Identities=18% Similarity=0.211 Sum_probs=49.3 Q ss_pred CCCEEEEECCCCCHHHHHHHHCCCC-EEEEECCCCCCHHHHHHHHHHHH-CCCCCCHHHHCCC Q ss_conf 9987999758988234677502352-59984255430368878753220-0122000000014 Q gi|254780398|r 47 DGITVIEIGAGPGNLTQMLLTLGAR-KVIVIEKDQQFFPILKDISSQHP-NRLEIIQDDALKV 107 (284) Q Consensus 47 ~~~~VlEIGpG~G~LT~~Ll~~~~~-~v~aiEiD~~~~~~l~~~~~~~~-~~~~ii~~Dal~~ 107 (284) ++..|||||||.|..+..++++.+. .++++|+....+..+.+...... .++.++++|+..+ T Consensus 38 ~~p~vLEIGcG~G~~~~~lA~~~p~~~~iGiD~~~~~i~~a~~~~~~~~l~Nv~~~~~da~~l 100 (213) T 2fca_A 38 DNPIHIEVGTGKGQFISGMAKQNPDINYIGIELFKSVIVTAVQKVKDSEAQNVKLLNIDADTL 100 (213) T ss_dssp CCCEEEEECCTTSHHHHHHHHHCTTSEEEEECSCHHHHHHHHHHHHHSCCSSEEEECCCGGGH T ss_pred CCCEEEEEECCCCHHHHHHHHHCCCCCEEEEECCHHHHHHHHHHHHHHCCCCEEEEECCHHHH T ss_conf 995299980358899999998689982899983599999999999983885446784365887 No 144 >1p91_A Ribosomal RNA large subunit methyltransferase A; RLMA, RRMA, 23S rRNA, NESG, structural genomics, PSI, protein structure initiative; HET: SAM; 2.80A {Escherichia coli} SCOP: c.66.1.33 Probab=98.03 E-value=1.1e-05 Score=54.35 Aligned_cols=90 Identities=14% Similarity=0.176 Sum_probs=61.7 Q ss_pred HHHHHHHHHHCCCCCCCEEEEECCCCCHHHHHHHHCCCC-EEEEECCCCCCHHHHHHHHHHHHCCCCCCHHHHCCCCHHH Q ss_conf 899999999719899987999758988234677502352-5998425543036887875322001220000000143155 Q gi|254780398|r 33 LNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGAR-KVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEK 111 (284) Q Consensus 33 ~~i~~~iv~~~~~~~~~~VlEIGpG~G~LT~~Ll~~~~~-~v~aiEiD~~~~~~l~~~~~~~~~~~~ii~~Dal~~d~~~ 111 (284) +.+.+.+.+.. ..++..|||||||+|..|..+++..+. .++++|+.+.++..+++.. + +++++.+|+.+.++.+ T Consensus 72 ~~~~~~l~~~~-~~~~~~vLDiGcG~G~~~~~l~~~~~~~~~~gvD~s~~~l~~a~~~~---~-~~~~~~~d~~~lp~~d 146 (269) T 1p91_A 72 DAIVAQLRERL-DDKATAVLDIGCGEGYYTHAFADALPEITTFGLDVSKVAIKAAAKRY---P-QVTFCVASSHRLPFSD 146 (269) T ss_dssp HHHHHHHHHHS-CTTCCEEEEETCTTSTTHHHHHHTCTTSEEEEEESCHHHHHHHHHHC---T-TSEEEECCTTSCSBCT T ss_pred HHHHHHHHHHC-CCCCCEEEEECCCCCHHHHHHHHHCCCCEEEEEECCHHHHHHHHHCC---C-CCCCEECCHHHCCCCC T ss_conf 99999998547-88899699968989699999998689968999979588999998517---7-5430002342167899 Q ss_pred HCCCCCCEEEEECCCHHHH Q ss_conf 2133222011202322467 Q gi|254780398|r 112 FFNISSPIRIIANLPYNIG 130 (284) Q Consensus 112 ~~~~~~~~~vvgNLPYnIs 130 (284) - .-...+....|-++. T Consensus 147 ~---sfD~v~~~~~~~~~~ 162 (269) T 1p91_A 147 T---SMDAIIRIYAPCKAE 162 (269) T ss_dssp T---CEEEEEEESCCCCHH T ss_pred C---CEEEEECCCCHHHHH T ss_conf 8---577874206778999 No 145 >3gjy_A Spermidine synthase; APC62791, structural genomics, PSI-2, protein structure initiative; HET: MSE; 1.47A {Corynebacterium glutamicum atcc 13032} Probab=98.02 E-value=9.1e-06 Score=54.84 Aligned_cols=98 Identities=20% Similarity=0.245 Sum_probs=64.9 Q ss_pred CCCCEEEEECCCCCHHHHHHHHCCCC-EEEEECCCCCCHHHHHHHHHHH-HCCCCCCHHHHCCCCHHHHCCCCCCEE-EE Q ss_conf 99987999758988234677502352-5998425543036887875322-001220000000143155213322201-12 Q gi|254780398|r 46 LDGITVIEIGAGPGNLTQMLLTLGAR-KVIVIEKDQQFFPILKDISSQH-PNRLEIIQDDALKVDFEKFFNISSPIR-II 122 (284) Q Consensus 46 ~~~~~VlEIGpG~G~LT~~Ll~~~~~-~v~aiEiD~~~~~~l~~~~~~~-~~~~~ii~~Dal~~d~~~~~~~~~~~~-vv 122 (284) .....||+||.|.|+|++.|++..+. ++++||+|+.+++..++.|.-. ..+++++.+|+.++-. ... ...|- || T Consensus 88 ~~p~rvL~lG~G~g~l~r~l~~~~P~~~v~~VEidp~vi~~ar~~f~~~~~~rv~v~~~Da~~~l~-~~~--~~~~D~Iv 164 (317) T 3gjy_A 88 ASKLRITHLGGGACTMARYFADVYPQSRNTVVELDAELARLSREWFDIPRAPRVKIRVDDARMVAE-SFT--PASRDVII 164 (317) T ss_dssp GGGCEEEEESCGGGHHHHHHHHHSTTCEEEEEESCHHHHHHHHHHSCCCCTTTEEEEESCHHHHHH-TCC--TTCEEEEE T ss_pred CCCCEEEEECCCHHHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHCCCCCCCCEEEEECCHHHHHH-HCC--CCCCCEEE T ss_conf 988779998996899999999978998699997988999999986799889976899784999997-505--57887799 Q ss_pred ------ECCCHHHHHHHHHHHHHHHCCCCC Q ss_conf ------023224678899999852010000 Q gi|254780398|r 123 ------ANLPYNIGTRLLFNWISADTWPPF 146 (284) Q Consensus 123 ------gNLPYnIss~Il~~ll~~~~~~~~ 146 (284) ...|.+..|.=.+..+.....+.+ T Consensus 165 ~D~f~~~~~p~~l~t~ef~~~~~~~L~pgG 194 (317) T 3gjy_A 165 RDVFAGAITPQNFTTVEFFEHCHRGLAPGG 194 (317) T ss_dssp ECCSTTSCCCGGGSBHHHHHHHHHHEEEEE T ss_pred EECCCCCCCCCCCCCHHHHHHHHHHCCCCC T ss_conf 957887667632167999999997418983 No 146 >3cgg_A SAM-dependent methyltransferase; NP_600671.1, methyltransferase domain, structural genomics; HET: NHE CIT; 2.00A {Corynebacterium glutamicum atcc 13032} Probab=98.01 E-value=5.2e-06 Score=56.34 Aligned_cols=66 Identities=15% Similarity=0.243 Sum_probs=51.9 Q ss_pred HHHHCCCCCCCEEEEECCCCCHHHHHHHHCCCCEEEEECCCCCCHHHHHHHHHHHHCCCCCCHHHHCCCCHH Q ss_conf 999719899987999758988234677502352599842554303688787532200122000000014315 Q gi|254780398|r 39 IAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFE 110 (284) Q Consensus 39 iv~~~~~~~~~~VlEIGpG~G~LT~~Ll~~~~~~v~aiEiD~~~~~~l~~~~~~~~~~~~ii~~Dal~~d~~ 110 (284) ++... ..++..|||+|||+|.++..++++++ +|+++|+.+.+++.++++..+ ++.+.+|+...+++ T Consensus 39 ll~~~-~~~~~~vLDlGCG~G~~~~~l~~~~~-~v~giD~s~~~i~~a~~~~~~----~~~~~~~~~~~~~~ 104 (195) T 3cgg_A 39 LIDAM-APRGAKILDAGCGQGRIGGYLSKQGH-DVLGTDLDPILIDYAKQDFPE----ARWVVGDLSVDQIS 104 (195) T ss_dssp HHHHH-SCTTCEEEEETCTTTHHHHHHHHTTC-EEEEEESCHHHHHHHHHHCTT----SEEEECCTTTSCCC T ss_pred HHHHC-CCCCCEEEEECCCCCHHHHHHHHCCC-EEEEEECCHHHHHHHHHHCCC----CCEEECCCCCCCCC T ss_conf 99965-89999899976888599999997699-899997972778999973025----43110243356566 No 147 >3bgv_A MRNA CAP guanine-N7 methyltransferase; alternative splicing, mRNA capping, mRNA processing, nucleus, phosphoprotein, RNA-binding; HET: SAH; 2.30A {Homo sapiens} PDB: 3epp_A* Probab=97.98 E-value=2.7e-05 Score=51.91 Aligned_cols=97 Identities=15% Similarity=0.121 Sum_probs=66.4 Q ss_pred HHHHHHHHC--CCCCCCEEEEECCCCCHHHHHHHHCCCCEEEEECCCCCCHHHHHHHHHHHH--------CCCCCCHHHH Q ss_conf 999999971--989998799975898823467750235259984255430368878753220--------0122000000 Q gi|254780398|r 35 ILKKIAESS--GSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQHP--------NRLEIIQDDA 104 (284) Q Consensus 35 i~~~iv~~~--~~~~~~~VlEIGpG~G~LT~~Ll~~~~~~v~aiEiD~~~~~~l~~~~~~~~--------~~~~ii~~Da 104 (284) ++.+.+... ...++..|||+|||.|..+...++.+..+++++++++..++.+++.+.... .+++.+++|+ T Consensus 20 LI~~~~~~~~~~~~~~~~VLDlGCG~G~dl~k~~~~~~~~v~GiDis~~~i~~A~~r~~~~~~~~~~~~~~~~~f~~~D~ 99 (313) T 3bgv_A 20 LIGEFLEKVRQKKKRDITVLDLGCGKGGDLLKWKKGRINKLVCTDIADVSVKQCQQRYEDMKNRRDSEYIFSAEFITADS 99 (313) T ss_dssp HHHHHHHHHHHTC--CCEEEEETCTTTTTHHHHHHTTCSEEEEEESCHHHHHHHHHHHHHHHSSSCC-CCCEEEEEECCT T ss_pred HHHHHHHHHHCCCCCCCEEEEEECCCCHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHCCCCCCCCCCCCEEEEECCH T ss_conf 99999987431578979799973477688999996599979999599999999999988543222223577638996563 Q ss_pred CCCCHHHHC-CCCCCEEEE---ECCCHHHHH Q ss_conf 014315521-332220112---023224678 Q gi|254780398|r 105 LKVDFEKFF-NISSPIRII---ANLPYNIGT 131 (284) Q Consensus 105 l~~d~~~~~-~~~~~~~vv---gNLPYnIss 131 (284) .+....+.. .....+-+| ..+-|...+ T Consensus 100 ~~~~~~~~~~~~~~~FD~I~~~f~lhy~~~~ 130 (313) T 3bgv_A 100 SKELLIDKFRDPQMCFDICSCQFVCHYSFES 130 (313) T ss_dssp TTSCSTTTCSSTTCCEEEEEEETCGGGGGGS T ss_pred HHCHHHHHCCCCCCCCEEEEECCCCEECCHH T ss_conf 2120133146767761089965642421215 No 148 >3p2e_A 16S rRNA methylase; methyltransferase, transferase, NPMA; HET: SAH; 1.68A {Escherichia coli} PDB: 3p2i_A 3p2k_A* Probab=97.98 E-value=1.4e-05 Score=53.74 Aligned_cols=74 Identities=15% Similarity=0.096 Sum_probs=55.3 Q ss_pred HHHHHHCCCCCCCEEEEECCCCCHHHHHHHHCCCC-EEEEECCCCCCHHHHHHHHHHH-----HCCCCCCHHHHCCCCHH Q ss_conf 99999719899987999758988234677502352-5998425543036887875322-----00122000000014315 Q gi|254780398|r 37 KKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGAR-KVIVIEKDQQFFPILKDISSQH-----PNRLEIIQDDALKVDFE 110 (284) Q Consensus 37 ~~iv~~~~~~~~~~VlEIGpG~G~LT~~Ll~~~~~-~v~aiEiD~~~~~~l~~~~~~~-----~~~~~ii~~Dal~~d~~ 110 (284) +.+.+.. ...+..|||||||+|.+|..|+++++. .|++||+++.+....+...... ..++..+.+|+.++.++ T Consensus 15 ~~l~~~~-~~~~~~vLDvGcG~G~~~~~la~~~p~~~vvGvD~s~~~l~~a~~~~~~~~~~~~~~~v~~~~~d~~~lp~~ 93 (225) T 3p2e_A 15 DELTEII-GQFDRVHIDLGTGDGRNIYKLAINDQNTFYIGIDPVKENLFDISKKIIKKPSKGGLSNVVFVIAAAESLPFE 93 (225) T ss_dssp HHHHHHH-TTCSEEEEEETCTTSHHHHHHHHTCTTEEEEEECSCCGGGHHHHHHHTSCGGGTCCSSEEEECCBTTBCCGG T ss_pred HHHHHHH-CCCCCEEEEEEEECCHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHHHHHCCCCCHHHHCCCHHHCCCC T ss_conf 9999864-889998999227673999999986899789998678899999998888754403786433320517449843 Q ss_pred H Q ss_conf 5 Q gi|254780398|r 111 K 111 (284) Q Consensus 111 ~ 111 (284) . T Consensus 94 ~ 94 (225) T 3p2e_A 94 L 94 (225) T ss_dssp G T ss_pred C T ss_conf 0 No 149 >2ift_A Putative methylase HI0767; NESG, Y767_haein, structural genomics, PSI-2, protein structure initiative; 2.30A {Haemophilus influenzae} SCOP: c.66.1.46 Probab=97.97 E-value=1.6e-05 Score=53.38 Aligned_cols=107 Identities=17% Similarity=0.149 Sum_probs=71.5 Q ss_pred CCCEEEEECCCCCHHHHHHHHCCCCEEEEECCCCCCHHHHHHHHHHHH---CCCCCCHHHHCCCCHHHHCCCCCCEEEEE Q ss_conf 998799975898823467750235259984255430368878753220---01220000000143155213322201120 Q gi|254780398|r 47 DGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQHP---NRLEIIQDDALKVDFEKFFNISSPIRIIA 123 (284) Q Consensus 47 ~~~~VlEIGpG~G~LT~~Ll~~~~~~v~aiEiD~~~~~~l~~~~~~~~---~~~~ii~~Dal~~d~~~~~~~~~~~~vvg 123 (284) .+..||++.+|+|++..+.+.+||++|+.||.|...+..+++...... +...+...|++++.... ......-.|+. T Consensus 53 ~~~~~LDLFaGSG~lglEAlSRGA~~v~fVE~~~~a~~~l~~N~~~l~~~~~~~~~~~~d~~~~l~~~-~~~~~fDlIFl 131 (201) T 2ift_A 53 HQSECLDGFAGSGSLGFEALSRQAKKVTFLELDKTVANQLKKNLQTLKCSSEQAEVINQSSLDFLKQP-QNQPHFDVVFL 131 (201) T ss_dssp TTCEEEETTCTTCHHHHHHHHTTCSEEEEECSCHHHHHHHHHHHHHTTCCTTTEEEECSCHHHHTTSC-CSSCCEEEEEE T ss_pred CCCEEEECCCCCCHHHHHHHHCCCCEEEEEEECHHHHHHHHHHHHHHCCCCCHHEEEEHHHHHHHHHC-CCCCCCCEEEE T ss_conf 99879987888289899999889939999974055778999999983866320023203456554300-24676655885 Q ss_pred CCCHHH--HHHHHHHHHHHHCCCCCCCHHHHEEEHH Q ss_conf 232246--7889999985201000000110203344 Q gi|254780398|r 124 NLPYNI--GTRLLFNWISADTWPPFWESLTLLFQKE 157 (284) Q Consensus 124 NLPYnI--ss~Il~~ll~~~~~~~~~~~~vlmvQkE 157 (284) ..||+- ...++..+....... ...++.+..+ T Consensus 132 DPPY~~~~~~~~l~~L~~~~~L~---~~~liilE~~ 164 (201) T 2ift_A 132 DPPFHFNLAEQAISLLCENNWLK---PNALIYVETE 164 (201) T ss_dssp CCCSSSCHHHHHHHHHHHTTCEE---EEEEEEEEEE T ss_pred CCCCCCCHHHHHHHHHHHCCCCC---CCEEEEEEEC T ss_conf 79755527999999999879939---8819999965 No 150 >3fzg_A 16S rRNA methylase; methyltransferase, plasmid, transferase; HET: SAM; 2.00A {Escherichia coli} Probab=97.96 E-value=9.5e-06 Score=54.72 Aligned_cols=71 Identities=8% Similarity=0.059 Sum_probs=53.2 Q ss_pred HHHHHHHHHHCCCCCCCEEEEECCCCCHHHHHHHHCCCC-EEEEECCCCCCHHHHHHHHHHHHCCCCCCHHHHC Q ss_conf 899999999719899987999758988234677502352-5998425543036887875322001220000000 Q gi|254780398|r 33 LNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGAR-KVIVIEKDQQFFPILKDISSQHPNRLEIIQDDAL 105 (284) Q Consensus 33 ~~i~~~iv~~~~~~~~~~VlEIGpG~G~LT~~Ll~~~~~-~v~aiEiD~~~~~~l~~~~~~~~~~~~ii~~Dal 105 (284) +...+.+...+. ++..|||||||+|.++..+++..+. .|+++++++.+++.+++......-...+...|.. T Consensus 37 ~~~~~~i~~~~~--~~~~VLDiGCG~G~~~~~la~~~p~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~ 108 (200) T 3fzg_A 37 NDFYTYVFGNIK--HVSSILDFGCGFNPLALYQWNENEKIIYHAYDIDRAEIAFLSSIIGKLKTTIKYRFLNKE 108 (200) T ss_dssp HHHHHHHHHHSC--CCSEEEEETCTTHHHHHHHHCSSCCCEEEEECSCHHHHHHHHHHHHHSCCSSEEEEECCH T ss_pred HHHHHHHHHHCC--CCCEEEEECCCCCHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHCCCCEEEEEECHH T ss_conf 999999995289--998799958867877999998789978999859999999998510232885156651013 No 151 >3cc8_A Putative methyltransferase; NP_977653.1, structural genomics, joint center for structural genomics, JCSG; 1.64A {Bacillus cereus atcc 10987} Probab=97.96 E-value=6.6e-06 Score=55.71 Aligned_cols=68 Identities=16% Similarity=0.196 Sum_probs=50.3 Q ss_pred HHHHHHCCCCCCCEEEEECCCCCHHHHHHHHCCCCEEEEECCCCCCHHHHHHHHHHHHCCCCCCHHHHCCCCHH Q ss_conf 99999719899987999758988234677502352599842554303688787532200122000000014315 Q gi|254780398|r 37 KKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFE 110 (284) Q Consensus 37 ~~iv~~~~~~~~~~VlEIGpG~G~LT~~Ll~~~~~~v~aiEiD~~~~~~l~~~~~~~~~~~~ii~~Dal~~d~~ 110 (284) ..+.+.+. .++..|||||||.|.+|..|++.++ +|++||+++.+++.+++... ++.+...|+....++ T Consensus 23 ~~~~~~~~-~~~~~ILDIGcG~G~~~~~l~~~~~-~v~giD~s~~~i~~a~~~~~----~~~~~~~~~~~~~~~ 90 (230) T 3cc8_A 23 PNLLKHIK-KEWKEVLDIGCSSGALGAAIKENGT-RVSGIEAFPEAAEQAKEKLD----HVVLGDIETMDMPYE 90 (230) T ss_dssp HHHHTTCC-TTCSEEEEETCTTSHHHHHHHTTTC-EEEEEESSHHHHHHHHTTSS----EEEESCTTTCCCCSC T ss_pred HHHHHHCC-CCCCEEEEECCCCCHHHHHHHHCCC-EEEEEECCHHHHHHHHHCCC----EEEEEHHHHHCCCCC T ss_conf 99997368-5799699951888699999997599-89999672566666541131----233101022138888 No 152 >3frh_A 16S rRNA methylase; methyltransferase domain, helical N-terminal domain, methyltransferase, plasmid, transferase; HET: SAH; 1.20A {Escherichia coli} PDB: 3fri_A* 3b89_A* Probab=97.94 E-value=1.2e-05 Score=54.11 Aligned_cols=67 Identities=13% Similarity=0.033 Sum_probs=52.3 Q ss_pred HCCCCCCCEEEEECCCCCHHHHHHHHCCCCEEEEECCCCCCHHHHHHHHHHHHCCCCCCHHHHCCCCHH Q ss_conf 719899987999758988234677502352599842554303688787532200122000000014315 Q gi|254780398|r 42 SSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFE 110 (284) Q Consensus 42 ~~~~~~~~~VlEIGpG~G~LT~~Ll~~~~~~v~aiEiD~~~~~~l~~~~~~~~~~~~ii~~Dal~~d~~ 110 (284) .....+...||++|||+|.++..+.. ++ +|+++++++.+++.+++......-++....+|+...... T Consensus 100 ~~~~~~~~~VLDlGCG~G~l~~~~~~-~~-~v~gvD~s~~~l~~ar~~~~~~~~~~~~~~~d~~~~~~~ 166 (253) T 3frh_A 100 IFSAETPRRVLDIACGLNPLALYERG-IA-SVWGCDIHQGLGDVITPFAREKDWDFTFALQDVLCAPPA 166 (253) T ss_dssp HTSSCCCSEEEEETCTTTHHHHHHTT-CS-EEEEEESBHHHHHHHHHHHHHTTCEEEEEECCTTTSCCC T ss_pred HHCCCCCCEEEEECCCCCHHHHHHCC-CC-EEEEEECCHHHHHHHHHHHHHCCCCCEEEECCHHHCCCC T ss_conf 84589998599967888899999768-98-389997979999999999998299704885562224577 No 153 >3e23_A Uncharacterized protein RPA2492; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; HET: SAM; 1.60A {Rhodopseudomonas palustris} Probab=97.93 E-value=2.2e-05 Score=52.46 Aligned_cols=72 Identities=15% Similarity=0.157 Sum_probs=51.5 Q ss_pred HHHHHHHHHHCCCCCCCEEEEECCCCCHHHHHHHHCCCCEEEEECCCCCCHHHHHHHHHHHHCCCCCCHHHHCCCCHHHH Q ss_conf 89999999971989998799975898823467750235259984255430368878753220012200000001431552 Q gi|254780398|r 33 LNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKF 112 (284) Q Consensus 33 ~~i~~~iv~~~~~~~~~~VlEIGpG~G~LT~~Ll~~~~~~v~aiEiD~~~~~~l~~~~~~~~~~~~ii~~Dal~~d~~~~ 112 (284) ...+.++++. +.++..|||||||.|..+..|++++. +|++||+.+.+++.+++.... .+...++...+..+- T Consensus 31 ~~~l~~~~~~--l~~~~~VLDvGCG~G~~~~~l~~~g~-~v~gvD~s~~~i~~a~~~~~~-----~~~~~~~~~~~~~~~ 102 (211) T 3e23_A 31 SATLTKFLGE--LPAGAKILELGCGAGYQAEAMLAAGF-DVDATDGSPELAAEASRRLGR-----PVRTMLFHQLDAIDA 102 (211) T ss_dssp CHHHHHHHTT--SCTTCEEEESSCTTSHHHHHHHHTTC-EEEEEESCHHHHHHHHHHHTS-----CCEECCGGGCCCCSC T ss_pred HHHHHHHHHH--CCCCCEEEEECCCCCHHHHHHHHCCC-CEEEEECCHHHHHHHHHHCCC-----CCEEEEEECCCCCCC T ss_conf 6999999961--89989899986888699999997599-232341469999999986088-----620112202553223 No 154 >3mcz_A O-methyltransferase; adomet_mtases, S-adenosylmethionine-dependent methyltransfer structural genomics, PSI-2; HET: MSE; 1.90A {Burkholderia thailandensis} Probab=97.87 E-value=0.0001 Score=48.32 Aligned_cols=93 Identities=11% Similarity=0.099 Sum_probs=62.2 Q ss_pred HHHHHHHCCCCCCCEEEEECCCCCHHHHHHHHCCCC-EEEEECCCCCCHHHHHHHHHH--HHCCCCCCHHHHCCCCHHHH Q ss_conf 999999719899987999758988234677502352-599842554303688787532--20012200000001431552 Q gi|254780398|r 36 LKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGAR-KVIVIEKDQQFFPILKDISSQ--HPNRLEIIQDDALKVDFEKF 112 (284) Q Consensus 36 ~~~iv~~~~~~~~~~VlEIGpG~G~LT~~Ll~~~~~-~v~aiEiD~~~~~~l~~~~~~--~~~~~~ii~~Dal~~d~~~~ 112 (284) ++.+.+..+......|+|||+|.|.++..++++.+. +++.++. +..++..++.... ..++++++.+|+++..... T Consensus 168 ~~~l~~~~~~~~~~~vlDvGgG~G~~~~~l~~~~p~~~~~~~Dl-p~~~~~a~~~~~~~~l~~rv~~~~gd~~~~~~~~- 245 (352) T 3mcz_A 168 VDVVSELGVFARARTVIDLAGGHGTYLAQVLRRHPQLTGQIWDL-PTTRDAARKTIHAHDLGGRVEFFEKNLLDARNFE- 245 (352) T ss_dssp HHHHHTCGGGTTCCEEEEETCTTCHHHHHHHHHCTTCEEEEEEC-GGGHHHHHHHHHHTTCGGGEEEEECCTTCGGGGT- T ss_pred HHHHHHHCCCCCCCEEEEECCCCCHHHHHHHHHCCEEEEEEEEC-HHHHHHHHHHHHHCCCCCCCEEEECCCCCCCCCC- T ss_conf 99999713877799899988988799999997598348999601-9999999999986388655257754411134566- Q ss_pred CCCCCCEEEEECCCHHHHH Q ss_conf 1332220112023224678 Q gi|254780398|r 113 FNISSPIRIIANLPYNIGT 131 (284) Q Consensus 113 ~~~~~~~~vvgNLPYnIss 131 (284) .......+++|+=++.+. T Consensus 246 -~~~~D~v~~~~vlh~~~d 263 (352) T 3mcz_A 246 -GGAADVVMLNDCLHYFDA 263 (352) T ss_dssp -TCCEEEEEEESCGGGSCH T ss_pred -CCCCCEEEECCEEECCCH T ss_conf -777636875131203899 No 155 >2b78_A Hypothetical protein SMU.776; structure genomics, methyltransferase, caries, structural genomics, unknown function; 2.00A {Streptococcus mutans} SCOP: b.122.1.9 c.66.1.51 Probab=97.82 E-value=7.5e-05 Score=49.13 Aligned_cols=103 Identities=14% Similarity=0.098 Sum_probs=75.7 Q ss_pred CCC--CCCCHHHHHH-HHHHCCCCCCCEEEEECCCCCHHHHHHHHCCCCEEEEECCCCCCHHHHHHHHHHHH---CCCCC Q ss_conf 841--1239899999-99971989998799975898823467750235259984255430368878753220---01220 Q gi|254780398|r 26 GQN--FLLDLNILKK-IAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQHP---NRLEI 99 (284) Q Consensus 26 GQn--FL~d~~i~~~-iv~~~~~~~~~~VlEIGpG~G~LT~~Ll~~~~~~v~aiEiD~~~~~~l~~~~~~~~---~~~~i 99 (284) ||+ |-.|.+-.+. +++. ..++..||++.+|+|..+...+..+|.+|++||+++..++.+++....+. .++++ T Consensus 190 gqkTG~flDqR~nR~~l~~~--~~~g~rVLDlfs~tGgfsl~aa~~gA~~V~~vD~s~~a~~~a~~N~~~N~l~~~~~~~ 267 (385) T 2b78_A 190 GLMTGIFLDQRQVRNELING--SAAGKTVLNLFSYTAAFSVAAAMGGAMATTSVDLAKRSRALSLAHFEANHLDMANHQL 267 (385) T ss_dssp SSCCSSCGGGHHHHHHHHHT--TTBTCEEEEETCTTTHHHHHHHHTTBSEEEEEESCTTHHHHHHHHHHHTTCCCTTEEE T ss_pred CCCCCCCHHHHHHHHHHHHH--HCCCCCEEEECCCCCHHHHHHHHCCCCEEEECCCCHHHHHHHHHHHHHHCCCCCCEEE T ss_conf 25568877788879999998--5599916863676878999998779958885267699999999989984899764477 Q ss_pred CHHHHCCCCHHHHCCCC-CCEEEEECCCHHHHH Q ss_conf 00000014315521332-220112023224678 Q gi|254780398|r 100 IQDDALKVDFEKFFNIS-SPIRIIANLPYNIGT 131 (284) Q Consensus 100 i~~Dal~~d~~~~~~~~-~~~~vvgNLPYnIss 131 (284) +.+|+.++ +......+ ..-.||-+.|+...+ T Consensus 268 ~~~D~~~~-L~~~~~~~~~fD~IilDPP~f~~~ 299 (385) T 2b78_A 268 VVMDVFDY-FKYARRHHLTYDIIIIDPPSFARN 299 (385) T ss_dssp EESCHHHH-HHHHHHTTCCEEEEEECCCCC--- T ss_pred EECCHHHH-HHHHHHCCCCCCEEEECCCCCCCC T ss_conf 72669999-999986489888899898633588 No 156 >2r3s_A Uncharacterized protein; methyltransferase domain, structural genomics, joint center structural genomics, JCSG; HET: MSE; 2.15A {Nostoc punctiforme pcc 73102} Probab=97.81 E-value=0.00011 Score=48.20 Aligned_cols=93 Identities=14% Similarity=0.210 Sum_probs=61.4 Q ss_pred HHHHHHHHCCCC--CCCEEEEECCCCCHHHHHHHHCCCC-EEEEECCCCCCHHHHHHHHHH--HHCCCCCCHHHHCCCCH Q ss_conf 999999971989--9987999758988234677502352-599842554303688787532--20012200000001431 Q gi|254780398|r 35 ILKKIAESSGSL--DGITVIEIGAGPGNLTQMLLTLGAR-KVIVIEKDQQFFPILKDISSQ--HPNRLEIIQDDALKVDF 109 (284) Q Consensus 35 i~~~iv~~~~~~--~~~~VlEIGpG~G~LT~~Ll~~~~~-~v~aiEiD~~~~~~l~~~~~~--~~~~~~ii~~Dal~~d~ 109 (284) ....+++.++.. .+..|||||+|.|..+..++++.+. +++.+++ +..++..++.... ..++++++.+|+.+.++ T Consensus 151 ~~~~~~~~~~~~~~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~Dl-p~~~~~a~~~~~~~~l~~rv~~~~~d~~~~~~ 229 (335) T 2r3s_A 151 PAQLIAQLVNENKIEPLKVLDISASHGLFGIAVAQHNPNAEIFGVDW-ASVLEVAKENARIQGVASRYHTIAGSAFEVDY 229 (335) T ss_dssp HHHHHHHHHTC--CCCSEEEEETCTTCHHHHHHHHHCTTCEEEEEEC-HHHHHHHHHHHHHHTCGGGEEEEESCTTTSCC T ss_pred HHHHHHHHHHHCCCCCCEEEEECCCCCHHHHHHHHHCCCCCEEEECC-HHHHHHHHHHHHHHCCCEEEEECCCCHHHCCC T ss_conf 89999987110068898799979996299999998589877377446-78889999878860874356532453320554 Q ss_pred HHHCCCCCCEEEEECCCHHHHHH Q ss_conf 55213322201120232246788 Q gi|254780398|r 110 EKFFNISSPIRIIANLPYNIGTR 132 (284) Q Consensus 110 ~~~~~~~~~~~vvgNLPYnIss~ 132 (284) ++- ....+.+|+=++.+-+ T Consensus 230 ~~~----~D~v~~~~vlh~~~~~ 248 (335) T 2r3s_A 230 GND----YDLVLLPNFLHHFDVA 248 (335) T ss_dssp CSC----EEEEEEESCGGGSCHH T ss_pred CCC----HHHHHHHHHHHHCCHH T ss_conf 331----3588863004432456 No 157 >2qfm_A Spermine synthase; spermidine aminopropyltransferase, SPMSY, structural genomics, structural genomics consortium, SGC; HET: SPD MTA; 1.80A {Homo sapiens} PDB: 3c6k_A* 3c6m_A* Probab=97.79 E-value=3.2e-05 Score=51.46 Aligned_cols=62 Identities=21% Similarity=0.362 Sum_probs=51.8 Q ss_pred CCCCEEEEECCCCCHHHHHHHHCCCCEEEEECCCCCCHHHHHHHHHHH---------HCCCCCCHHHHCCC Q ss_conf 999879997589882346775023525998425543036887875322---------00122000000014 Q gi|254780398|r 46 LDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQH---------PNRLEIIQDDALKV 107 (284) Q Consensus 46 ~~~~~VlEIGpG~G~LT~~Ll~~~~~~v~aiEiD~~~~~~l~~~~~~~---------~~~~~ii~~Dal~~ 107 (284) .+...||-||.|.|++.+++++.++.+|++||+|+..++..++-+... ..+++++.+|+.++ T Consensus 187 ~~pk~VLIIGGGdG~~~revlk~~~~~V~~VEID~~Vve~akk~~~~~~~~~~d~~r~~rv~iii~Da~~~ 257 (364) T 2qfm_A 187 YTGKDVLILGGGDGGILCEIVKLKPKMVTMVEIDQMVIDGCKKYMRKTCGDVLDNLKGDCYQVLIEDCIPV 257 (364) T ss_dssp CTTCEEEEEECTTCHHHHHHHTTCCSEEEEEESCHHHHHHHHHHCCC----CCSSSEETTEEEEESCHHHH T ss_pred CCCCEEEEEECCCHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHHHHHHHHCCCCCCCCEEHHHHHHH T ss_conf 89885999969943999999861784289971038999999986565400121084423443355779999 No 158 >2avd_A Catechol-O-methyltransferase; structural genomics, structural genomics consortium, SGC; HET: SAM; 1.70A {Homo sapiens} SCOP: c.66.1.1 Probab=97.79 E-value=3.8e-05 Score=50.99 Aligned_cols=79 Identities=14% Similarity=0.152 Sum_probs=61.7 Q ss_pred CCCCHHHHHHHHHHCCCCCCCEEEEECCCCCHHHHHHHHCCC--CEEEEECCCCCCHHHHHHHHHH--HHCCCCCCHHHH Q ss_conf 123989999999971989998799975898823467750235--2599842554303688787532--200122000000 Q gi|254780398|r 29 FLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGA--RKVIVIEKDQQFFPILKDISSQ--HPNRLEIIQDDA 104 (284) Q Consensus 29 FL~d~~i~~~iv~~~~~~~~~~VlEIGpG~G~LT~~Ll~~~~--~~v~aiEiD~~~~~~l~~~~~~--~~~~~~ii~~Da 104 (284) -.+.+....-+.-.+......+|||||+|.|.=|..++..-+ .+|+++|+|+..++.+++.+.. ..++++++.||| T Consensus 51 ~~i~p~~g~lL~~l~~~~~~k~vLEiGt~~GySal~lA~al~~~g~v~tie~~~~~~~~Ar~~~~~ag~~~~i~~~~g~a 130 (229) T 2avd_A 51 SMMTCEQAQLLANLARLIQAKKALDLGTFTGYSALALALALPADGRVVTCEVDAQPPELGRPLWRQAEAEHKIDLRLKPA 130 (229) T ss_dssp GSCCHHHHHHHHHHHHHTTCCEEEEECCTTSHHHHHHHTTSCTTCEEEEEESCSHHHHHHHHHHHHTTCTTTEEEEESCH T ss_pred CCCCHHHHHHHHHHHHHHCCCEEEEEECCCCHHHHHHHHCCCCCCEEEEEECCHHHHHHHHHHHHHCCCCCCEEEEEECH T ss_conf 66499999999999986499789998444689999999437999789999574659999999999769988569999500 Q ss_pred CCC Q ss_conf 014 Q gi|254780398|r 105 LKV 107 (284) Q Consensus 105 l~~ 107 (284) ++. T Consensus 131 ~e~ 133 (229) T 2avd_A 131 LET 133 (229) T ss_dssp HHH T ss_pred HHH T ss_conf 456 No 159 >1sui_A Caffeoyl-COA O-methyltransferase; rossmann fold, protein-cofactor-substrate complex; HET: SAH FRE; 2.70A {Medicago sativa} SCOP: c.66.1.1 PDB: 1sus_A* Probab=97.78 E-value=3.7e-05 Score=51.07 Aligned_cols=85 Identities=11% Similarity=0.085 Sum_probs=61.3 Q ss_pred CCCCCCC-CCHHHHHHHHHHCCCCCCCEEEEECCCCCHHHHHHHHCCC--CEEEEECCCCCCHHHHHHHHHH--HHCCCC Q ss_conf 6584112-3989999999971989998799975898823467750235--2599842554303688787532--200122 Q gi|254780398|r 24 YMGQNFL-LDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGA--RKVIVIEKDQQFFPILKDISSQ--HPNRLE 98 (284) Q Consensus 24 ~lGQnFL-~d~~i~~~iv~~~~~~~~~~VlEIGpG~G~LT~~Ll~~~~--~~v~aiEiD~~~~~~l~~~~~~--~~~~~~ 98 (284) ++++.++ +.+....-+.-.+.......|||||.+.|.=|..++..-+ .+++++|+|+..+..+++.+.. ..++++ T Consensus 55 ~~~~~~m~i~~~~g~~L~~L~~~~~ak~iLEIGT~~GySal~~a~al~~~g~l~tie~~~~~~~~Ar~~~~~ag~~~kI~ 134 (247) T 1sui_A 55 KHPWNIMTTSADEGQFLSMLLKLINAKNTMEIGVYTGYSLLATALAIPEDGKILAMDINKENYELGLPVIKKAGVDHKID 134 (247) T ss_dssp TSTTGGGSCCHHHHHHHHHHHHHTTCCEEEEECCGGGHHHHHHHHHSCTTCEEEEEESCCHHHHHHHHHHHHTTCGGGEE T ss_pred HCCCCCCCCCHHHHHHHHHHHHHHCCCEEEEEECCCCHHHHHHHHHCCCCCEEEEEECCHHHHHHHHHHHHHHHCCCCEE T ss_conf 67754467599999999999986499779996321589999999858546369998517787899999998620145058 Q ss_pred CCHHHHCCCC Q ss_conf 0000000143 Q gi|254780398|r 99 IIQDDALKVD 108 (284) Q Consensus 99 ii~~Dal~~d 108 (284) ++.|||+++- T Consensus 135 ~~~g~A~e~L 144 (247) T 1sui_A 135 FREGPALPVL 144 (247) T ss_dssp EEESCHHHHH T ss_pred EEECCHHHHH T ss_conf 9944289999 No 160 >3dxy_A TRNA (guanine-N(7)-)-methyltransferase; rossmann fold methyltransferase, tRNA modification, S-adenosyl-L-methionine, tRNA processing; HET: SAM; 1.50A {Escherichia coli K12} PDB: 3dxx_A* 3dxz_A* Probab=97.78 E-value=4.1e-05 Score=50.74 Aligned_cols=106 Identities=18% Similarity=0.158 Sum_probs=69.3 Q ss_pred HHHHHHHHHCCCCCCCCCCCCCCCCHHHHHHHHHHCCCCCCCEEEEECCCCCHHHHHHHHCCCC-EEEEECCCCCCHHHH Q ss_conf 4799999981898433658411239899999999719899987999758988234677502352-599842554303688 Q gi|254780398|r 8 HSLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGAR-KVIVIEKDQQFFPIL 86 (284) Q Consensus 8 ~~i~~ll~~~~~~p~k~lGQnFL~d~~i~~~iv~~~~~~~~~~VlEIGpG~G~LT~~Ll~~~~~-~v~aiEiD~~~~~~l 86 (284) ..++++..+|++-..+. .+|-. . .-+ .++..+||||+|.|.-|..++++.+. .+++||+-...+..+ T Consensus 7 ~~l~~~~p~~~~~~~~~-----~~d~~---~---lF~-~~~pliLEIGcG~G~~l~~~A~~~P~~~~iGiEi~~~~v~~a 74 (218) T 3dxy_A 7 HALENYWPVMGVEFSED-----MLDFP---A---LFG-REAPVTLEIGFGMGASLVAMAKDRPEQDFLGIEVHSPGVGAC 74 (218) T ss_dssp CHHHHHHHHHBCCCCSS-----CCCHH---H---HHS-SCCCEEEEESCTTCHHHHHHHHHCTTSEEEEECSCHHHHHHH T ss_pred HHHHHHCHHCCCCCCCC-----CCCHH---H---HCC-CCCCEEEEECCCCCHHHHHHHHHCCCCCEEEEEEECCCEEEE T ss_conf 99997470126478878-----76999---9---729-999539997268889999999968999889999723505530 Q ss_pred HHHHHHH-HCCCCCCHHHHCCCCHHHHCCCCCCEEEEECCC Q ss_conf 7875322-001220000000143155213322201120232 Q gi|254780398|r 87 KDISSQH-PNRLEIIQDDALKVDFEKFFNISSPIRIIANLP 126 (284) Q Consensus 87 ~~~~~~~-~~~~~ii~~Dal~~d~~~~~~~~~~~~vvgNLP 126 (284) .+..... -.++.++++|+.++-. .....++--.|.-|-| T Consensus 75 ~~~~~~~~l~Ni~~~~~da~~~l~-~~~~~~s~d~I~i~FP 114 (218) T 3dxy_A 75 LASAHEEGLSNLRVMCHDAVEVLH-KMIPDNSLRMVQLFFP 114 (218) T ss_dssp HHHHHHTTCSSEEEECSCHHHHHH-HHSCTTCEEEEEEESC T ss_pred HHHCCHHHHCCCCEECCCHHHHHH-HHCCCCCCCCCEECCC T ss_conf 321201210455056453899998-7524564544323168 No 161 >2gs9_A Hypothetical protein TT1324; methyl transferase, structural genomics, NPPSFA; HET: SAH; 2.60A {Thermus thermophilus HB8} Probab=97.77 E-value=2.2e-05 Score=52.50 Aligned_cols=59 Identities=15% Similarity=0.229 Sum_probs=47.7 Q ss_pred CCCCCEEEEECCCCCHHHHHHHHCCCCEEEEECCCCCCHHHHHHHHHHHHCCCCCCHHHHCCCCHH Q ss_conf 899987999758988234677502352599842554303688787532200122000000014315 Q gi|254780398|r 45 SLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFE 110 (284) Q Consensus 45 ~~~~~~VlEIGpG~G~LT~~Ll~~~~~~v~aiEiD~~~~~~l~~~~~~~~~~~~ii~~Dal~~d~~ 110 (284) +.++..|||||||+|.++..+. . .+|+++|+++.+++.+++... ++.++++|+..++++ T Consensus 34 l~~g~~iLDiGCG~G~~~~~l~--~-~~v~g~D~s~~~l~~A~~~~~----~~~~~~~~~~~l~~~ 92 (211) T 2gs9_A 34 LPPGESLLEVGAGTGYWLRRLP--Y-PQKVGVEPSEAMLAVGRRRAP----EATWVRAWGEALPFP 92 (211) T ss_dssp CCCCSEEEEETCTTCHHHHHCC--C-SEEEEECCCHHHHHHHHHHCT----TSEEECCCTTSCCSC T ss_pred CCCCCEEEEECCCCHHHHHHCC--C-CCEEEEECCHHHHHHHHHCCC----CCEEEECCHHCCCCC T ss_conf 7999989998998609999737--6-868998389999998763366----520343423117887 No 162 >3hvi_A Catechol O-methyltransferase; neurotransmitter degradation, alternative initiation, catecholamine metabolism, cell membrane, cytoplasm; HET: 619; 1.20A {Rattus norvegicus} PDB: 1jr4_A* 1vid_A* 1h1d_A* 2cl5_A* 3hvh_A* 3hvj_A* 3hvk_A* 2zlb_A 2zth_A* 2zvj_A* 3a7d_A* 3bwm_A* 3bwy_A* 3a7e_A* Probab=97.76 E-value=2.2e-05 Score=52.46 Aligned_cols=77 Identities=12% Similarity=0.159 Sum_probs=57.1 Q ss_pred CCHHHHHHHHHHCCCCCCCEEEEECCCCCHHHHHHHHCC--CCEEEEECCCCCCHHHHHHHHHH--HHCCCCCCHHHHCC Q ss_conf 398999999997198999879997589882346775023--52599842554303688787532--20012200000001 Q gi|254780398|r 31 LDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLG--ARKVIVIEKDQQFFPILKDISSQ--HPNRLEIIQDDALK 106 (284) Q Consensus 31 ~d~~i~~~iv~~~~~~~~~~VlEIGpG~G~LT~~Ll~~~--~~~v~aiEiD~~~~~~l~~~~~~--~~~~~~ii~~Dal~ 106 (284) +.+....-+-..+...+...|||||+|.|.-|..+++.- ..+|+++|+++..++.+++.+.. ..++++++.||+.+ T Consensus 42 i~~~~g~~L~~lv~~~kpk~iLEiGt~~G~Stl~la~al~~~g~v~~id~~~~~~~~ar~~~~~agl~~~I~l~~gd~~e 121 (221) T 3hvi_A 42 VGDAKGQIMDAVIREYSPSLVLELGAYCGYSAVRMARLLQPGARLLTMEMNPDYAAITQQMLNFAGLQDKVTILNGASQD 121 (221) T ss_dssp CHHHHHHHHHHHHHHHCCSEEEEECCTTSHHHHHHHTTCCTTCEEEEECCCHHHHHHHHHHHHHHTCTTTEEEECSCHHH T ss_pred CCHHHHHHHHHHHHHCCCCEEEEEECCCHHHHHHHHHHCCCCCEEEEEECCCHHHHHHHHHHHHCCCCCCEEEEECCHHH T ss_conf 08999999999998619999999714742999999985799978999988841258999999975997741588377999 Q ss_pred C Q ss_conf 4 Q gi|254780398|r 107 V 107 (284) Q Consensus 107 ~ 107 (284) + T Consensus 122 ~ 122 (221) T 3hvi_A 122 L 122 (221) T ss_dssp H T ss_pred H T ss_conf 9 No 163 >2i62_A Nicotinamide N-methyltransferase; structural genomics, structural genomics consortium, SGC; HET: SAH; 1.80A {Mus musculus} PDB: 2iip_A* Probab=97.74 E-value=1.9e-05 Score=52.82 Aligned_cols=58 Identities=21% Similarity=0.297 Sum_probs=45.9 Q ss_pred CCCCCCCEEEEECCCCCHHHHHHHHCCCCEEEEECCCCCCHHHHHHHHHHHHCCCCCC Q ss_conf 1989998799975898823467750235259984255430368878753220012200 Q gi|254780398|r 43 SGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQHPNRLEII 100 (284) Q Consensus 43 ~~~~~~~~VlEIGpG~G~LT~~Ll~~~~~~v~aiEiD~~~~~~l~~~~~~~~~~~~ii 100 (284) .+..+++.|||||||+|.++..+++.+..+|+++++.+.+++.+++........+... T Consensus 52 ~~~~~g~~vLDlGCG~G~~~~~l~~~~~~~V~giD~S~~~i~~a~~~~~~~~~~~~~~ 109 (265) T 2i62_A 52 LGAVKGELLIDIGSGPTIYQLLSACESFTEIIVSDYTDQNLWELQKWLKKEPGAFDWS 109 (265) T ss_dssp SSSCCEEEEEEESCTTCCGGGTTGGGTEEEEEEEESCHHHHHHHHHHHTTCTTCCCCH T ss_pred CCCCCCCEEEEECCCCCHHHHHHHHHCCCEEEEECCCHHHHHHHHHHHHHCCCCCCHH T ss_conf 8888898899967877676999997219989995699999999999987547762213 No 164 >3ll7_A Putative methyltransferase; methytransferase, structural genomics, MCSG, PSI-2, protein structure initiative; HET: MSE; 1.80A {Porphyromonas gingivalis} Probab=97.74 E-value=3.6e-05 Score=51.10 Aligned_cols=81 Identities=15% Similarity=0.137 Sum_probs=59.2 Q ss_pred CCCCCEEEEECCCCCHHHHHHHHCCCCEEEEECCCCCCHHHHHHHHHHH---HCCCCCCHHHHCCCCHHHHCCCCCCEEE Q ss_conf 8999879997589882346775023525998425543036887875322---0012200000001431552133222011 Q gi|254780398|r 45 SLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQH---PNRLEIIQDDALKVDFEKFFNISSPIRI 121 (284) Q Consensus 45 ~~~~~~VlEIGpG~G~LT~~Ll~~~~~~v~aiEiD~~~~~~l~~~~~~~---~~~~~ii~~Dal~~d~~~~~~~~~~~~v 121 (284) +.+++.|+++|+|.|.-+.++++.+ .+|++||+|+..+..++.++... ..++++++||++++ +..... ...-.| T Consensus 91 ~~~g~~v~Dl~cG~G~da~alA~~~-~~V~~vE~d~~~~~~A~~N~~~~~~~~~~v~~~~~D~~~~-l~~~~~-~~~d~v 167 (410) T 3ll7_A 91 IREGTKVVDLTGGLGIDFIALMSKA-SQGIYIERNDETAVAARHNIPLLLNEGKDVNILTGDFKEY-LPLIKT-FHPDYI 167 (410) T ss_dssp SCTTCEEEESSCSSSHHHHHHHTTC-SEEEEEESCHHHHHHHHHHHHHHSCTTCEEEEEESCGGGS-HHHHHH-HCCSEE T ss_pred CCCCCEEEECCCCHHHHHHHHHHCC-CEEEEEECCHHHHHHHHHHHHHHHCCCCCEEEEECCHHHH-HHHCCC-CCCCEE T ss_conf 6799989987886679999999639-9899995899999999984898726788269996668888-753467-778889 Q ss_pred EECCCHH Q ss_conf 2023224 Q gi|254780398|r 122 IANLPYN 128 (284) Q Consensus 122 vgNLPYn 128 (284) +.+.|.- T Consensus 168 ~~DPaRR 174 (410) T 3ll7_A 168 YVDPARR 174 (410) T ss_dssp EECCEEC T ss_pred EECCCCC T ss_conf 9766233 No 165 >3bt7_A TRNA (uracil-5-)-methyltransferase; methyluridine, methyltransferase, TRMA, RUMT; HET: 5MU; 2.43A {Escherichia coli} Probab=97.73 E-value=5.2e-05 Score=50.13 Aligned_cols=156 Identities=13% Similarity=0.190 Sum_probs=90.8 Q ss_pred CCHHHHHHHHHHCCCCCCCEEEEECCCCCHHHHHHHHCCCCEEEEECCCCCCHHHHHHHHHHHH-CCCCCCHHHHCCCC- Q ss_conf 3989999999971989998799975898823467750235259984255430368878753220-01220000000143- Q gi|254780398|r 31 LDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQHP-NRLEIIQDDALKVD- 108 (284) Q Consensus 31 ~d~~i~~~iv~~~~~~~~~~VlEIGpG~G~LT~~Ll~~~~~~v~aiEiD~~~~~~l~~~~~~~~-~~~~ii~~Dal~~d- 108 (284) ..+.+.+.+++.+... +..|+|.-+|.|.+|..|++. +++|++||+++..+..+++....+. .+...+.+|+-++- T Consensus 198 ~~~~l~~~v~~~~~~~-~~~vlDLycG~Gt~sl~La~~-~~~V~gvE~~~~av~~A~~Na~~n~i~N~~f~~~~a~~~~~ 275 (369) T 3bt7_A 198 MNIQMLEWALDVTKGS-KGDLLELYCGNGNFSLALARN-FDRVLATEIAKPSVAAAQYNIAANHIDNVQIIRMAAEEFTQ 275 (369) T ss_dssp HHHHHHHHHHHHTTTC-CSEEEEESCTTSHHHHHHGGG-SSEEEEECCCHHHHHHHHHHHHHTTCCSEEEECCCSHHHHH T ss_pred HHHHHHHHHHHHHCCC-CCEEEECCCCCCHHHHHHHHC-CCEEEEEEECHHHHHHHHHHHHHCCCCCEEEEECCHHHHHH T ss_conf 9999999999871567-764887378965889998730-85788999702678999999997598871899725999998 Q ss_pred -------HHHH----CCCCCCEEEEECCCHHHHHHHHHHHHHHHCCCCCCCHHHHEEEHHHHHHHHHCCCH--HHHHHHH Q ss_conf -------1552----13322201120232246788999998520100000011020334478875301231--2332345 Q gi|254780398|r 109 -------FEKF----FNISSPIRIIANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNS--PHYGRLS 175 (284) Q Consensus 109 -------~~~~----~~~~~~~~vvgNLPYnIss~Il~~ll~~~~~~~~~~~~vlmvQkEvA~Rl~a~pg~--k~Yg~LS 175 (284) +..+ .....+-.||-+-|=.=-.+-+..++.. .+ ++ ++| ...|.| +| |. T Consensus 276 ~~~~~~~~~~~~~~~~~~~~~d~vilDPPR~Gl~~~v~~~~~~--~~----~i-vYV--------SCnP~TlarD---l~ 337 (369) T 3bt7_A 276 AMNGVREFNRLQGIDLKSYQCETIFVDPPRSGLDSETEKMVQA--YP----RI-LYI--------SCNPETLCKN---LE 337 (369) T ss_dssp HHSSCCCCTTGGGSCGGGCCEEEEEECCCTTCCCHHHHHHHTT--SS----EE-EEE--------ESCHHHHHHH---HH T ss_pred HHHHHHHHHHHHCCCHHCCCCCEEEECCCCCCCHHHHHHHHHC--CC----CE-EEE--------ECCHHHHHHH---HH T ss_conf 8763145665302310126587799897962518999999856--99----59-999--------0898999999---99 Q ss_pred HHHCCCCCEEEECCCCCCEECCCC-CCCEEEEEECCC Q ss_conf 432013320120001100001057-875788730125 Q gi|254780398|r 176 VLTGWRTKATMMFDISPHVFFPSP-KVTSTVIHFIPH 211 (284) Q Consensus 176 v~~q~~~~v~~~~~V~~~~F~P~P-kVdS~vi~l~pk 211 (284) .+.+ -| .+-++-+-.+||.. .|.+ |+.|++| T Consensus 338 ~L~~-gy---~l~~~~~~D~FP~T~HvE~-v~~l~rk 369 (369) T 3bt7_A 338 TLSQ-TH---KVERLALFDQFPYTHHMQC-GVLLTAK 369 (369) T ss_dssp HHHH-HE---EEEEEEEECCSTTSSCCEE-EEEEEEC T ss_pred HHHC-CC---EEEEEEEEECCCCCCEEEE-EEEEECC T ss_conf 9854-85---6879999712899980888-9999639 No 166 >2gb4_A Thiopurine S-methyltransferase; 18204406, thiopurine methyltransferase, structural genomics, PSI, protein structure initiative; HET: SAH; 1.25A {Mus musculus} PDB: 3bgi_A* 3bgd_A* 2bzg_A* 2h11_A* Probab=97.71 E-value=7.9e-05 Score=49.01 Aligned_cols=79 Identities=9% Similarity=-0.016 Sum_probs=63.3 Q ss_pred CCHHHHHHHHHHCCCCCCCEEEEECCCCCHHHHHHHHCCCCEEEEECCCCCCHHHHHHHHHH------------------ Q ss_conf 39899999999719899987999758988234677502352599842554303688787532------------------ Q gi|254780398|r 31 LDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQ------------------ 92 (284) Q Consensus 31 ~d~~i~~~iv~~~~~~~~~~VlEIGpG~G~LT~~Ll~~~~~~v~aiEiD~~~~~~l~~~~~~------------------ 92 (284) +++.+.+.+-+.++..++..||++|||.|.-...|+++|. +|++||+.+..++.+++.... T Consensus 52 ~~p~L~~~~~~~~~~~~~~rvL~pgCG~G~da~~LA~~G~-~V~gvD~S~~Ai~~a~~~~~~~~~~~~~~~~~~~~~~~~ 130 (252) T 2gb4_A 52 GHQLLKKHLDTFLKGQSGLRVFFPLCGKAIEMKWFADRGH-TVVGVEISEIGIREFFAEQNLSYTEEPLAEIAGAKVFKS 130 (252) T ss_dssp CCHHHHHHHHHHHTTCCSCEEEETTCTTCTHHHHHHHTTC-EEEEECSCHHHHHHHHHHTTCCEEEEECTTSTTCEEEEE T ss_pred CCHHHHHHHHHHCCCCCCCEEEEECCCCHHHHHHHHHCCC-EEEEECCCHHHHHHHHHHCCCCCCCCCCCCCCCCCEEEC T ss_conf 9989999999860889999899989878088999984898-489981629999999987545543122210036420221 Q ss_pred HHCCCCCCHHHHCCCCHH Q ss_conf 200122000000014315 Q gi|254780398|r 93 HPNRLEIIQDDALKVDFE 110 (284) Q Consensus 93 ~~~~~~ii~~Dal~~d~~ 110 (284) ...+++++++|+...+.. T Consensus 131 ~~~~i~~~~~D~f~~~~~ 148 (252) T 2gb4_A 131 SSGSISLYCCSIFDLPRA 148 (252) T ss_dssp TTSSEEEEESCTTTGGGG T ss_pred CCCCEEEEECCHHHCCCC T ss_conf 477368998543320211 No 167 >3opn_A Putative hemolysin; structural genomics, PSI-2, protein structure initiative, NE SGX research center for structural genomics, nysgxrc; 2.05A {Lactococcus lactis subsp} Probab=97.68 E-value=0.00015 Score=47.25 Aligned_cols=186 Identities=14% Similarity=0.191 Sum_probs=96.0 Q ss_pred HHHHHHCCC-CCCCEEEEECCCCCHHHHHHHHCCCCEEEEECCCCCCHHHHHHHHHHHHCCCCCCHH-HHCCCCHHHHCC Q ss_conf 999997198-999879997589882346775023525998425543036887875322001220000-000143155213 Q gi|254780398|r 37 KKIAESSGS-LDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQD-DALKVDFEKFFN 114 (284) Q Consensus 37 ~~iv~~~~~-~~~~~VlEIGpG~G~LT~~Ll~~~~~~v~aiEiD~~~~~~l~~~~~~~~~~~~ii~~-Dal~~d~~~~~~ 114 (284) ....+..++ .++..+|+||+.+|..|..|++.+|++|+||+........ .....+ ++....+ |+-.+...++.. T Consensus 26 ~~al~~f~i~~~gk~~lDiGaStGGFTd~lLq~GA~~V~aVDVG~~qL~~---~lr~d~-rV~~~E~~n~R~~~~~~~~~ 101 (232) T 3opn_A 26 EKALKEFHLEINGKTCLDIGSSTGGFTDVMLQNGAKLVYALDVGTNQLAW---KIRSDE-RVVVMEQFNFRNAVLADFEQ 101 (232) T ss_dssp HHHHHHTTCCCTTCEEEEETCTTSHHHHHHHHTTCSEEEEECSSCCCCCH---HHHTCT-TEEEECSCCGGGCCGGGCCS T ss_pred HHHHHHCCCCCCCCEEEECCCCCCHHHHHHHHCCCCEEEEEECCCHHHHH---HHHCCC-CCCCHHHHCCCCCCHHHCCC T ss_conf 99999779986899899858898589999998098789999437034307---774398-70320210144553333046 Q ss_pred CCCCEEEEECCCHHHHHHHHHHHHHHHCCCCCCCHHHHEE--EHHHHHHHHHCCC---HHHH-H-HHHHHHCCCCCEEEE Q ss_conf 3222011202322467889999985201000000110203--3447887530123---1233-2-345432013320120 Q gi|254780398|r 115 ISSPIRIIANLPYNIGTRLLFNWISADTWPPFWESLTLLF--QKEVGERITAQKN---SPHY-G-RLSVLTGWRTKATMM 187 (284) Q Consensus 115 ~~~~~~vvgNLPYnIss~Il~~ll~~~~~~~~~~~~vlmv--QkEvA~Rl~a~pg---~k~Y-g-~LSv~~q~~~~v~~~ 187 (284) +.+-.++.-+-|--.+.++-.+..... + -..+++++ |-|++...+.+-| ++.. . .+.-+..++. ..- T Consensus 102 -~~~Dlvv~DvSFISl~~vlp~~~~~l~-~--~~~~v~LiKPQFE~g~~~v~k~GvV~d~~~~~~~i~~v~~~~~--~~g 175 (232) T 3opn_A 102 -GRPSFTSIDVSFISLDLILPPLYEILE-K--NGEVAALIKPQFEAGREQVGKNGIIRDPKVHQMTIEKVLKTAT--QLG 175 (232) T ss_dssp -CCCSEEEECCSSSCGGGTHHHHHHHSC-T--TCEEEEEECHHHHSCHHHHC-CCCCCCHHHHHHHHHHHHHHHH--HHT T ss_pred -CCCCEEEECCCHHHHHHHHHHHHHHHC-C--CCEEEEEECCCCHHCHHHHCCCCEECCHHHHHHHHHHHHHHHH--HCC T ss_conf -888789970651769999999999826-8--9889999764001134541669857899999999999999998--689 Q ss_pred CCCCCCEECCCCCCCE--E-EEEECCCCCCCCCCHHHHHHHHHHHHCC Q ss_conf 0011000010578757--8-8730125885534767899999999727 Q gi|254780398|r 188 FDISPHVFFPSPKVTS--T-VIHFIPHLNPIPCCLESLKKITQEAFGK 232 (284) Q Consensus 188 ~~V~~~~F~P~PkVdS--~-vi~l~pk~~~~~~~~~~~~~~~~~~F~~ 232 (284) +.+-...-+|.+.=+. - ++.+.+...........+..+++.+... T Consensus 176 ~~v~~~~~SpI~G~~GN~Eyl~~~~k~~~~~~~~~~~i~~~V~~a~~~ 223 (232) T 3opn_A 176 FSVKGLTFSPIKGGAGNVEFLVHLLKDGKAEIAQQVNIESVLQKESEE 223 (232) T ss_dssp EEEEEEEECSSCBTTTBCCEEEEEEESSCCCBCTTCCHHHHHHHHHC- T ss_pred CEEEEEEECCCCCCCCCHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHH T ss_conf 978589978899988379889886116788886164799999999998 No 168 >3dp7_A SAM-dependent methyltransferase; structural genomics, protein structure initiative, NEW YORK structural genomix research, nysgxrc; 2.33A {Bacteroides vulgatus atcc 8482} Probab=97.66 E-value=0.00013 Score=47.68 Aligned_cols=93 Identities=13% Similarity=0.149 Sum_probs=63.0 Q ss_pred HHHHHHCCCCCCCEEEEECCCCCHHHHHHHHCCCC-EEEEECCCCCCHHHHHHHHH--HHHCCCCCCHHHHCCCCHHHHC Q ss_conf 99999719899987999758988234677502352-59984255430368878753--2200122000000014315521 Q gi|254780398|r 37 KKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGAR-KVIVIEKDQQFFPILKDISS--QHPNRLEIIQDDALKVDFEKFF 113 (284) Q Consensus 37 ~~iv~~~~~~~~~~VlEIGpG~G~LT~~Ll~~~~~-~v~aiEiD~~~~~~l~~~~~--~~~~~~~ii~~Dal~~d~~~~~ 113 (284) ..+.+.++......||+||+|+|..+..++++.+. +++.++.... ++..++... ...++++++.+|+.+.+++. T Consensus 169 ~~~~~~~~~~~~~~vLDiG~G~G~~~~~la~~~p~~~~~~~d~~~~-~~~~~~~~~~~~~~~rv~~~~~d~~~~~~~~-- 245 (363) T 3dp7_A 169 GKALEIVFSHHPKRLLDIGGNTGKWATQCVQYNKEVEVTIVDLPQQ-LEMMRKQTAGLSGSERIHGHGANLLDRDVPF-- 245 (363) T ss_dssp HHHHHHHGGGCCSEEEEESCTTCHHHHHHHHHSTTCEEEEEECHHH-HHHHHHHHTTCTTGGGEEEEECCCCSSSCCC-- T ss_pred HHHHHHCCCCCCCEEEEECCCCHHHHHHHHHHCCCEEEEEECCCHH-HHHHHHHHHHCCCCCCEEEEECCCCCCCCCC-- T ss_conf 9999752445899899979995299999998689739999757116-7999988765278772699973333566789-- Q ss_pred CCCCCEEEEECCCHHHHHH Q ss_conf 3322201120232246788 Q gi|254780398|r 114 NISSPIRIIANLPYNIGTR 132 (284) Q Consensus 114 ~~~~~~~vvgNLPYnIss~ 132 (284) +.+....++.++-+..+-+ T Consensus 246 ~~~~d~~~~~~~l~~~~~~ 264 (363) T 3dp7_A 246 PTGFDAVWMSQFLDCFSEE 264 (363) T ss_dssp CCCCSEEEEESCSTTSCHH T ss_pred CCCCEEEEEECHHHCCCHH T ss_conf 9984489771012025614 No 169 >3duw_A OMT, O-methyltransferase, putative; alternating of alpha and beta with complex SAH; HET: SAH; 1.20A {Bacillus cereus} PDB: 3dul_A* Probab=97.65 E-value=5.3e-05 Score=50.08 Aligned_cols=77 Identities=18% Similarity=0.121 Sum_probs=58.1 Q ss_pred CCHHHHHHHHHHCCCCCCCEEEEECCCCCHHHHHHHHCCC--CEEEEECCCCCCHHHHHHHHHH--HHCCCCCCHHHHCC Q ss_conf 3989999999971989998799975898823467750235--2599842554303688787532--20012200000001 Q gi|254780398|r 31 LDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGA--RKVIVIEKDQQFFPILKDISSQ--HPNRLEIIQDDALK 106 (284) Q Consensus 31 ~d~~i~~~iv~~~~~~~~~~VlEIGpG~G~LT~~Ll~~~~--~~v~aiEiD~~~~~~l~~~~~~--~~~~~~ii~~Dal~ 106 (284) +++....-+...+...+...|||||+|.|.-|..+++.-+ .+++++|.++.+++.+++.+.. ..++++++.+|+.+ T Consensus 42 i~p~~g~~L~~L~~~~~pk~ILEiGt~~G~St~~la~al~~~g~i~tie~~~~~~~~a~~~~~~~g~~~~i~~~~~~~~d 121 (223) T 3duw_A 42 VSPTQGKFLQLLVQIQGARNILEIGTLGGYSTIWLARGLSSGGRVVTLEASEKHADIARSNIERANLNDRVEVRTGLALD 121 (223) T ss_dssp CCHHHHHHHHHHHHHHTCSEEEEECCTTSHHHHHHHTTCCSSCEEEEEESCHHHHHHHHHHHHHTTCTTTEEEEESCHHH T ss_pred CCHHHHHHHHHHHHHHCCCEEEEEECCCCHHHHHHHHHCCCCCEEEEEECCHHHHHHHHHHHHHCCCCCEEEEEECCCHH T ss_conf 69999999999999749988999834427899999974888885999944888899999999984997646687345236 Q ss_pred C Q ss_conf 4 Q gi|254780398|r 107 V 107 (284) Q Consensus 107 ~ 107 (284) . T Consensus 122 ~ 122 (223) T 3duw_A 122 S 122 (223) T ss_dssp H T ss_pred H T ss_conf 7 No 170 >2igt_A SAM dependent methyltransferase; alpha-beta sandwich, beta-barrel, structural genomics, PSI- 2, protein structure initiative; HET: MSE SAM GOL; 1.89A {Agrobacterium tumefaciens str} SCOP: c.66.1.51 Probab=97.64 E-value=0.00013 Score=47.64 Aligned_cols=99 Identities=13% Similarity=0.085 Sum_probs=70.8 Q ss_pred CCCCCHHHHHHHHHHC--CCCCCCEEEEECCCCCHHHHHHHHCCCCEEEEECCCCCCHHHHHHHHHH--HH-CCCCCCHH Q ss_conf 1123989999999971--9899987999758988234677502352599842554303688787532--20-01220000 Q gi|254780398|r 28 NFLLDLNILKKIAESS--GSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQ--HP-NRLEIIQD 102 (284) Q Consensus 28 nFL~d~~i~~~iv~~~--~~~~~~~VlEIGpG~G~LT~~Ll~~~~~~v~aiEiD~~~~~~l~~~~~~--~~-~~~~ii~~ 102 (284) .|-.|.+..++.++.. ...++..||++.+|+|+.+.+.+..++ +|++||.++..++.++++... .. .+++++++ T Consensus 132 G~FlDqr~nr~~l~~~~~~~~kg~rVLdlF~ytG~~sl~aa~~GA-~V~~VD~s~~al~~a~~N~~lNg~~~~~~~~i~~ 210 (332) T 2igt_A 132 GVFPEQIVHWEWLKNAVETADRPLKVLNLFGYTGVASLVAAAAGA-EVTHVDASKKAIGWAKENQVLAGLEQAPIRWICE 210 (332) T ss_dssp SCCGGGHHHHHHHHHHHHHSSSCCEEEEETCTTCHHHHHHHHTTC-EEEEECSCHHHHHHHHHHHHHHTCTTSCEEEECS T ss_pred CCCCCCHHHHHHHHHHHHHCCCCCEEEECCCCCCHHHHHHHHCCC-EEEEEECCHHHHHHHHHHHHHHCCCCCCEEEEEC T ss_conf 345210668999999866315897588726777778999997898-4999938799999999999984898885899926 Q ss_pred HHCCCCHHHHCCCCCC-EEEEECCCHH Q ss_conf 0001431552133222-0112023224 Q gi|254780398|r 103 DALKVDFEKFFNISSP-IRIIANLPYN 128 (284) Q Consensus 103 Dal~~d~~~~~~~~~~-~~vvgNLPYn 128 (284) |+.++- ......+.. -.||-+.|.. T Consensus 211 Da~~~l-~~~~~~g~~fD~IilDPP~f 236 (332) T 2igt_A 211 DAMKFI-QREERRGSTYDIILTDPPKF 236 (332) T ss_dssp CHHHHH-HHHHHHTCCBSEEEECCCSE T ss_pred CHHHHH-HHHHHHCCCCCEEEECCCCC T ss_conf 799999-99997189976899789644 No 171 >3g07_A 7SK snRNA methylphosphate capping enzyme; structural genomics consortium (SGC), methyltransferase, phosphoprotein, S-adenosyl-L-methionine; HET: SAM; 2.65A {Homo sapiens} Probab=97.63 E-value=3.9e-05 Score=50.89 Aligned_cols=48 Identities=15% Similarity=0.275 Sum_probs=40.6 Q ss_pred CCCCCEEEEECCCCCHHHHHHHHCCC-CEEEEECCCCCCHHHHHHHHHH Q ss_conf 89998799975898823467750235-2599842554303688787532 Q gi|254780398|r 45 SLDGITVIEIGAGPGNLTQMLLTLGA-RKVIVIEKDQQFFPILKDISSQ 92 (284) Q Consensus 45 ~~~~~~VlEIGpG~G~LT~~Ll~~~~-~~v~aiEiD~~~~~~l~~~~~~ 92 (284) ..++..||+||||+|.+|..+++..+ .+|++|++++.+++.+++.... T Consensus 44 ~~~~~~vLDiGCG~G~~~i~la~~~~~~~v~GiDis~~~i~~A~~n~~~ 92 (292) T 3g07_A 44 WFRGRDVLDLGCNVGHLTLSIACKWGPSRMVGLDIDSRLIHSARQNIRH 92 (292) T ss_dssp GTTTSEEEEESCTTCHHHHHHHHHTCCSEEEEEESCHHHHHHHHHTC-- T ss_pred CCCCCEEEEEECCCCHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHH T ss_conf 1699959998579789999999878998899970988999999999998 No 172 >2hnk_A SAM-dependent O-methyltransferase; modified rossman fold; HET: SAH; 2.30A {Leptospira interrogans} Probab=97.63 E-value=5.6e-05 Score=49.95 Aligned_cols=83 Identities=12% Similarity=0.132 Sum_probs=62.8 Q ss_pred CCCCCC-CCHHHHHHHHHHCCCCCCCEEEEECCCCCHHHHHHHHCCC--CEEEEECCCCCCHHHHHHHHHH--HHCCCCC Q ss_conf 584112-3989999999971989998799975898823467750235--2599842554303688787532--2001220 Q gi|254780398|r 25 MGQNFL-LDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGA--RKVIVIEKDQQFFPILKDISSQ--HPNRLEI 99 (284) Q Consensus 25 lGQnFL-~d~~i~~~iv~~~~~~~~~~VlEIGpG~G~LT~~Ll~~~~--~~v~aiEiD~~~~~~l~~~~~~--~~~~~~i 99 (284) +|+-.+ +++....-+--.+.......|||||.+.|.=|..+++.-+ .+|+++|.|+..+..+++.+.. ..+++++ T Consensus 37 ~~~~~m~i~p~~g~~L~~L~~~~~ak~iLEiGT~~GySal~lA~al~~~g~v~tie~~~~~~~~A~~~~~~ag~~~~I~~ 116 (239) T 2hnk_A 37 LAQANMQISPEEGQFLNILTKISGAKRIIEIGTFTGYSSLCFASALPEDGKILCCDVSEEWTNVARKYWKENGLENKIFL 116 (239) T ss_dssp C---CCSCCHHHHHHHHHHHHHHTCSEEEEECCTTCHHHHHHHHHSCTTCEEEEEESCHHHHHHHHHHHHHTTCGGGEEE T ss_pred CCCCCCCCCHHHHHHHHHHHHHHCCCEEEEEECCCCHHHHHHHHHCCCCCCEEEEECCHHHHHHHHHHHHHCCCCEEEEE T ss_conf 69987775999999999999972997799972545889999997178788689994538889999999998799625999 Q ss_pred CHHHHCCC Q ss_conf 00000014 Q gi|254780398|r 100 IQDDALKV 107 (284) Q Consensus 100 i~~Dal~~ 107 (284) +.|||++. T Consensus 117 ~~g~A~e~ 124 (239) T 2hnk_A 117 KLGSALET 124 (239) T ss_dssp EESCHHHH T ss_pred EEECHHHH T ss_conf 96168999 No 173 >3c3y_A Pfomt, O-methyltransferase; plant secondary metabolism; HET: SAH; 1.37A {Mesembryanthemum crystallinum} Probab=97.63 E-value=7.7e-05 Score=49.05 Aligned_cols=85 Identities=13% Similarity=0.104 Sum_probs=61.3 Q ss_pred CCCCCCC-CCHHHHHHHHHHCCCCCCCEEEEECCCCCHHHHHHHHCCC--CEEEEECCCCCCHHHHHHHHHH--HHCCCC Q ss_conf 6584112-3989999999971989998799975898823467750235--2599842554303688787532--200122 Q gi|254780398|r 24 YMGQNFL-LDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGA--RKVIVIEKDQQFFPILKDISSQ--HPNRLE 98 (284) Q Consensus 24 ~lGQnFL-~d~~i~~~iv~~~~~~~~~~VlEIGpG~G~LT~~Ll~~~~--~~v~aiEiD~~~~~~l~~~~~~--~~~~~~ 98 (284) ++++-++ +++....-+.-.+...+...|||||.|.|.=|..+++.-+ .+|+++|+|+..++.+++.+.. ..++++ T Consensus 46 ~~~~~~m~~~p~~g~lL~~L~~~~~~k~vLEiGT~~GyStl~la~al~~~g~v~tie~~~~~~~~A~~~~~~ag~~~~i~ 125 (237) T 3c3y_A 46 SHPDSYMSTSPLAGQLMSFVLKLVNAKKTIEVGVFTGYSLLLTALSIPDDGKITAIDFDREAYEIGLPFIRKAGVEHKIN 125 (237) T ss_dssp TSTTGGGSCCHHHHHHHHHHHHHTTCCEEEEECCTTSHHHHHHHHHSCTTCEEEEEESCHHHHHHHHHHHHHTTCGGGEE T ss_pred HCCCCCCCCCHHHHHHHHHHHHHHCCCEEEEEECCCCHHHHHHHHHCCCCCEEEEEEECHHHHHHHHHHHHHCCCCCEEE T ss_conf 66987677699999999999997399889997052578999999748998489999602676899999999849981389 Q ss_pred CCHHHHCCCC Q ss_conf 0000000143 Q gi|254780398|r 99 IIQDDALKVD 108 (284) Q Consensus 99 ii~~Dal~~d 108 (284) ++.||+++.- T Consensus 126 ~~~g~a~e~l 135 (237) T 3c3y_A 126 FIESDAMLAL 135 (237) T ss_dssp EEESCHHHHH T ss_pred EEECCCCCCH T ss_conf 9962200001 No 174 >2qe6_A Uncharacterized protein TFU_2867; putative methyltransferase, structural genomics, joint cente structural genomics, JCSG; HET: NEP SAM; 1.95A {Thermobifida fusca YX} Probab=97.63 E-value=0.00015 Score=47.26 Aligned_cols=98 Identities=14% Similarity=0.281 Sum_probs=66.2 Q ss_pred CCCCCCHHHHHHHHHHCC---------------------CCCC-CEEEEECCCCCHH--HHHHHH-CCCC-EEEEECCCC Q ss_conf 411239899999999719---------------------8999-8799975898823--467750-2352-599842554 Q gi|254780398|r 27 QNFLLDLNILKKIAESSG---------------------SLDG-ITVIEIGAGPGNL--TQMLLT-LGAR-KVIVIEKDQ 80 (284) Q Consensus 27 QnFL~d~~i~~~iv~~~~---------------------~~~~-~~VlEIGpG~G~L--T~~Ll~-~~~~-~v~aiEiD~ 80 (284) .||-+|....+++.+... ...+ +.+|+||||+|.. |..+++ ..+. .|+.|+.|+ T Consensus 35 ~n~~~Dr~~~~~~~~~~P~~~~~~~~nR~fl~Ravr~la~~~GirqfLDlGcG~gt~~~~he~a~~~~P~arVv~vD~dp 114 (274) T 2qe6_A 35 DNFEADRALADYACKHIPGLKESAIENRKVLVRGVRFLAGEAGISQFLDLGSGLPTVQNTHEVAQSVNPDARVVYVDIDP 114 (274) T ss_dssp SCCHHHHHHHHHHHHHSTTHHHHHHHHHHHHHHHHHHHHTTTCCCEEEEETCCSCCSSCHHHHHHHHCTTCEEEEEESSH T ss_pred CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEECCCCCCCCHHHHHHHHHCCCCEEEEEECCH T ss_conf 57688899999999878874899999799999999999874597789994738898641999999878997799995978 Q ss_pred CCHHHHHHHHHHHHCCCCCCHHHHCCCC-------HHHHCCCCCCEEEEECC Q ss_conf 3036887875322001220000000143-------15521332220112023 Q gi|254780398|r 81 QFFPILKDISSQHPNRLEIIQDDALKVD-------FEKFFNISSPIRIIANL 125 (284) Q Consensus 81 ~~~~~l~~~~~~~~~~~~ii~~Dal~~d-------~~~~~~~~~~~~vvgNL 125 (284) .++.+.+.++...+ +..++++|+.+.+ ....++...|..|+.|- T Consensus 115 ~~la~ara~l~~~~-~~~~v~aD~~~p~~il~~~~~~~~~D~~~Pvav~~~~ 165 (274) T 2qe6_A 115 MVLTHGRALLAKDP-NTAVFTADVRDPEYILNHPDVRRMIDFSRPAAIMLVG 165 (274) T ss_dssp HHHHHHHHHHTTCT-TEEEEECCTTCHHHHHHSHHHHHHCCTTSCCEEEETT T ss_pred HHHHHHHHHHCCCC-CEEEEECCCCCHHHHHCCHHHHCCCCCCCCEEEEEEE T ss_conf 89999876504799-7689974302734342252453347866772686670 No 175 >2ip2_A Probable phenazine-specific methyltransferase; pyocyanin, phenazine-1- carboxylic acid, PHZM; 1.80A {Pseudomonas aeruginosa PAO1} Probab=97.63 E-value=0.00034 Score=45.10 Aligned_cols=90 Identities=16% Similarity=0.371 Sum_probs=61.7 Q ss_pred HHHHHHHCCCCCCCEEEEECCCCCHHHHHHHHCCCC-EEEEECCCCCCHHHHHHHHHH--HHCCCCCCHHHHCCCCHHHH Q ss_conf 999999719899987999758988234677502352-599842554303688787532--20012200000001431552 Q gi|254780398|r 36 LKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGAR-KVIVIEKDQQFFPILKDISSQ--HPNRLEIIQDDALKVDFEKF 112 (284) Q Consensus 36 ~~~iv~~~~~~~~~~VlEIGpG~G~LT~~Ll~~~~~-~v~aiEiD~~~~~~l~~~~~~--~~~~~~ii~~Dal~~d~~~~ 112 (284) ...+.+..+. ++..|++||+|.|.++..++++.+. +++.++. +..++..++.... ..++++++.||+++ +++. T Consensus 157 ~~~~~~~~d~-~~~~vlDvG~G~G~~~~~l~~~~P~l~~~~~Dl-p~~~~~a~~~~~~~~~~~ri~~~~gd~~~-~~p~- 232 (334) T 2ip2_A 157 FHEIPRLLDF-RGRSFVDVGGGSGELTKAILQAEPSARGVMLDR-EGSLGVARDNLSSLLAGERVSLVGGDMLQ-EVPS- 232 (334) T ss_dssp HHHHHHHSCC-TTCEEEEETCTTCHHHHHHHHHCTTCEEEEEEC-TTCTHHHHHHTHHHHHTTSEEEEESCTTT-CCCS- T ss_pred HHHHHHHHCC-CCCEEEECCCCCCHHHHHHHHHCCCEEEEEECC-CCHHHHHHHHHHHCCCCCEEEEECCCHHH-CCCC- T ss_conf 9998886077-888673038987688888898699649998228-51128998767650777706997177654-3887- Q ss_pred CCCCCCEEEEECCCHHHHHH Q ss_conf 13322201120232246788 Q gi|254780398|r 113 FNISSPIRIIANLPYNIGTR 132 (284) Q Consensus 113 ~~~~~~~~vvgNLPYnIss~ 132 (284) +....+++|.=++-+-+ T Consensus 233 ---~~D~v~~~~vlh~~~d~ 249 (334) T 2ip2_A 233 ---NGDIYLLSRIIGDLDEA 249 (334) T ss_dssp ---SCSEEEEESCGGGCCHH T ss_pred ---CCCEEEEEEEECCCCHH T ss_conf ---57089996211158978 No 176 >3adn_A Spermidine synthase; aminopropyltransferase, polyamine synthase, rossmann fold, polyamine biosynthesis, spermidine biosynthesis, transferase; 2.90A {Escherichia coli} PDB: 3o4f_A Probab=97.61 E-value=0.00015 Score=47.21 Aligned_cols=78 Identities=15% Similarity=0.235 Sum_probs=60.1 Q ss_pred CCHHHHHHHHHHC---CCCCCCEEEEECCCCCHHHHHHHHCCC-CEEEEECCCCCCHHHHHHHHHH-----H-HCCCCCC Q ss_conf 3989999999971---989998799975898823467750235-2599842554303688787532-----2-0012200 Q gi|254780398|r 31 LDLNILKKIAESS---GSLDGITVIEIGAGPGNLTQMLLTLGA-RKVIVIEKDQQFFPILKDISSQ-----H-PNRLEII 100 (284) Q Consensus 31 ~d~~i~~~iv~~~---~~~~~~~VlEIGpG~G~LT~~Ll~~~~-~~v~aiEiD~~~~~~l~~~~~~-----~-~~~~~ii 100 (284) .|+.+...+.-+. -..+...||-||-|.|.+.+++++..+ .+|++||+|+..++.+++-+.. + +.+++++ T Consensus 64 ~de~~Yhe~l~h~pl~~~~~p~~VLiiGgG~G~~~~e~lk~~~v~~v~~VEiD~~Vi~~a~~~~~~~~~~~~~dprv~i~ 143 (294) T 3adn_A 64 RDEFIYHEMMTHVPLLAHGHAKHVLIIGGGDGAMLREVTRHKNVESITMVEIDAGVVSFCRQYLPNHNAGSYDDPRFKLV 143 (294) T ss_dssp TTHHHHHHHHHHHHHHHSTTCCEEEEESCTTCHHHHHHHTCTTCCEEEEECSCTTHHHHHHHHCHHHHSSCTTCTTCCEE T ss_pred CCHHHHHHHHHHHHHHCCCCCCEEEEECCCCHHHHHHHHHHCCCCEEEEECCCHHHHHHHHHCCCCCCCCCCCCCCEEEE T ss_conf 76789999998888750998566999889837999999981996638997178999999874484113554678857999 Q ss_pred HHHHCCCC Q ss_conf 00000143 Q gi|254780398|r 101 QDDALKVD 108 (284) Q Consensus 101 ~~Dal~~d 108 (284) .+|+.++- T Consensus 144 ~~Da~~~l 151 (294) T 3adn_A 144 IDDGVNFV 151 (294) T ss_dssp CSCSCC-- T ss_pred ECHHHHHH T ss_conf 51689998 No 177 >3i9f_A Putative type 11 methyltransferase; structural genomics, PSI-2, protein structure initiative; 2.50A {Sulfolobus solfataricus} Probab=97.61 E-value=2.8e-05 Score=51.75 Aligned_cols=46 Identities=17% Similarity=0.251 Sum_probs=39.4 Q ss_pred CCCCCEEEEECCCCCHHHHHHHHCCCCEEEEECCCCCCHHHHHHHHH Q ss_conf 89998799975898823467750235259984255430368878753 Q gi|254780398|r 45 SLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISS 91 (284) Q Consensus 45 ~~~~~~VlEIGpG~G~LT~~Ll~~~~~~v~aiEiD~~~~~~l~~~~~ 91 (284) ..+...|||||||+|.+|..+++.+. +|+++|+++.+++.+++.+. T Consensus 15 ~~~~~~VLDiGcG~G~~~~~l~~~~~-~v~gvD~s~~~i~~a~~~~~ 60 (170) T 3i9f_A 15 EGKKGVIVDYGCGNGFYCKYLLEFAT-KLYCIDINVIALKEVKEKFD 60 (170) T ss_dssp SSCCEEEEEETCTTCTTHHHHHTTEE-EEEEECSCHHHHHHHHHHCT T ss_pred CCCCCEEEEEECCCCHHHHHHHHCCC-EEEEEECCCCCCCEECCCCE T ss_conf 78969799980899799999996299-89999456420100012210 No 178 >1qzz_A RDMB, aclacinomycin-10-hydroxylase; anthracycline, methyltransferase, polyketide, tailoring enzymes, structural proteomics in europe; HET: SAM; 2.10A {Streptomyces purpurascens} SCOP: a.4.5.29 c.66.1.12 PDB: 1r00_A* 1xds_A* 1xdu_A* Probab=97.58 E-value=0.00025 Score=45.86 Aligned_cols=98 Identities=11% Similarity=0.129 Sum_probs=63.7 Q ss_pred HHHHHHHCCCCCCCEEEEECCCCCHHHHHHHHCCCC-EEEEECCCCCCHHHHHHHHHH--HHCCCCCCHHHHCCCCHHHH Q ss_conf 999999719899987999758988234677502352-599842554303688787532--20012200000001431552 Q gi|254780398|r 36 LKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGAR-KVIVIEKDQQFFPILKDISSQ--HPNRLEIIQDDALKVDFEKF 112 (284) Q Consensus 36 ~~~iv~~~~~~~~~~VlEIGpG~G~LT~~Ll~~~~~-~v~aiEiD~~~~~~l~~~~~~--~~~~~~ii~~Dal~~d~~~~ 112 (284) +..+++..+......|||||+|.|.++..|+++.+. +++.++. +..++..++.... ..++++++.+|+++-... T Consensus 171 ~~~~~~~~d~~~~~~vlDvG~G~G~~~~~l~~~~P~~~~~~~D~-~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~~p~-- 247 (374) T 1qzz_A 171 YEAPADAYDWSAVRHVLDVGGGNGGMLAAIALRAPHLRGTLVEL-AGPAERARRRFADAGLADRVTVAEGDFFKPLPV-- 247 (374) T ss_dssp THHHHHTSCCTTCCEEEEETCTTSHHHHHHHHHCTTCEEEEEEC-HHHHHHHHHHHHHTTCTTTEEEEECCTTSCCSC-- T ss_pred HHHHHHHCCCCCCCEEEEECCCCCHHHHHHHHHCCCEEEEEEEC-HHHHHHHHHHHHHCCCCCEEEEEECHHHHCCCC-- T ss_conf 99999848965687899979988788999999789728999607-888999999988558862278870414431898-- Q ss_pred CCCCCCEEEEECCCHHHHH----HHHHHHHH Q ss_conf 1332220112023224678----89999985 Q gi|254780398|r 113 FNISSPIRIIANLPYNIGT----RLLFNWIS 139 (284) Q Consensus 113 ~~~~~~~~vvgNLPYnIss----~Il~~ll~ 139 (284) +....++.+.=++.+- .||.++.. T Consensus 248 ---~~D~v~~~~vlh~~~d~~~~~iL~~~~~ 275 (374) T 1qzz_A 248 ---TADVVLLSFVLLNWSDEDALTILRGCVR 275 (374) T ss_dssp ---CEEEEEEESCGGGSCHHHHHHHHHHHHH T ss_pred ---CCCEEEEEEEEECCCHHHHHHHHHHHHH T ss_conf ---7748998422423898999999999998 No 179 >3cbg_A O-methyltransferase; cyanobacterium; HET: SAH FER 4FE; 2.00A {Synechocystis SP} Probab=97.58 E-value=8.9e-05 Score=48.66 Aligned_cols=79 Identities=14% Similarity=0.103 Sum_probs=63.2 Q ss_pred CCCCHHHHHHHHHHCCCCCCCEEEEECCCCCHHHHHHHHCC--CCEEEEECCCCCCHHHHHHHHHH--HHCCCCCCHHHH Q ss_conf 12398999999997198999879997589882346775023--52599842554303688787532--200122000000 Q gi|254780398|r 29 FLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLG--ARKVIVIEKDQQFFPILKDISSQ--HPNRLEIIQDDA 104 (284) Q Consensus 29 FL~d~~i~~~iv~~~~~~~~~~VlEIGpG~G~LT~~Ll~~~--~~~v~aiEiD~~~~~~l~~~~~~--~~~~~~ii~~Da 104 (284) ..+++....-+.-.+.......|||||.+.|.=|..++..- -.+|+++|+|+..+..+++.+.. ..++++++.||| T Consensus 54 m~i~p~~g~~L~~L~~~~~ak~iLEiGT~~GyStl~lA~al~~~g~v~tiE~~~~~~~~A~~~~~~ag~~~~i~~~~g~a 133 (232) T 3cbg_A 54 MQISPEQAQFLGLLISLTGAKQVLEIGVFRGYSALAMALQLPPDGQIIACDQDPNATAIAKKYWQKAGVAEKISLRLGPA 133 (232) T ss_dssp GSCCHHHHHHHHHHHHHHTCCEEEEECCTTSHHHHHHHTTSCTTCEEEEEESCHHHHHHHHHHHHHHTCGGGEEEEESCH T ss_pred CCCCHHHHHHHHHHHHHHCCCEEEEEECCCCHHHHHHHHHCCCCCEEEEEECCCCHHHHHHHHHHHCCCCCCEEEEECCH T ss_conf 76599999999999997499789998434389999999858998589999767414899999999869986289996258 Q ss_pred CCC Q ss_conf 014 Q gi|254780398|r 105 LKV 107 (284) Q Consensus 105 l~~ 107 (284) ++. T Consensus 134 ~e~ 136 (232) T 3cbg_A 134 LAT 136 (232) T ss_dssp HHH T ss_pred HHH T ss_conf 999 No 180 >1mjf_A Spermidine synthase; spermidine synthetase, structural genomics, PSI, protein structure initiative; 1.80A {Pyrococcus furiosus} SCOP: c.66.1.17 PDB: 2e5w_A* 2zsu_A* Probab=97.57 E-value=6e-05 Score=49.75 Aligned_cols=63 Identities=21% Similarity=0.347 Sum_probs=52.5 Q ss_pred CCCCCEEEEECCCCCHHHHHHHHCCCCEEEEECCCCCCHHHHHHHHHH-----------HHCCCCCCHHHHCCC Q ss_conf 899987999758988234677502352599842554303688787532-----------200122000000014 Q gi|254780398|r 45 SLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQ-----------HPNRLEIIQDDALKV 107 (284) Q Consensus 45 ~~~~~~VlEIGpG~G~LT~~Ll~~~~~~v~aiEiD~~~~~~l~~~~~~-----------~~~~~~ii~~Dal~~ 107 (284) ..+...||-||.|.|.+.+.+++....+|++||+|+..++.+++-+.. .+.+++++.+|+.++ T Consensus 73 ~~~p~~VLiiG~G~G~~~~~~l~~~~~~v~~VEiD~~vi~~a~~~~~~~~~~~e~~~~~~d~rv~v~~~Da~~~ 146 (281) T 1mjf_A 73 HPKPKRVLVIGGGDGGTVREVLQHDVDEVIMVEIDEDVIMVSKDLIKIDNGLLEAMLNGKHEKAKLTIGDGFEF 146 (281) T ss_dssp SSCCCEEEEEECTTSHHHHHHTTSCCSEEEEEESCHHHHHHHHHHTCTTTTHHHHHHTTCCSSEEEEESCHHHH T ss_pred CCCCCEEEEEECCCHHHHHHHHHCCCCEEEEECCCHHHHHHHHHHHHHCCCHHHHHHCCCCCCEEEEECHHHHH T ss_conf 99988799992894399999984388358997068899999998511142134453035799669996218999 No 181 >1vlm_A SAM-dependent methyltransferase; possible histamine N-methyltransferase, structural genomics, JCSG, protein structure initiative, PSI; 2.20A {Thermotoga maritima MSB8} SCOP: c.66.1.41 Probab=97.55 E-value=5.4e-05 Score=50.04 Aligned_cols=54 Identities=20% Similarity=0.275 Sum_probs=43.4 Q ss_pred CCCCEEEEECCCCCHHHHHHHHCCCCEEEEECCCCCCHHHHHHHHHHHHCCCCCCHHHHCCCCHH Q ss_conf 99987999758988234677502352599842554303688787532200122000000014315 Q gi|254780398|r 46 LDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFE 110 (284) Q Consensus 46 ~~~~~VlEIGpG~G~LT~~Ll~~~~~~v~aiEiD~~~~~~l~~~~~~~~~~~~ii~~Dal~~d~~ 110 (284) .++..|||||||+|.++..+. ++++||+.+.+++.+++. +++++++|+.+++++ T Consensus 46 ~~~~~vLDiGcGtG~~~~~l~-----~~~giD~s~~~i~~a~~~------~i~~~~~d~~~l~~~ 99 (219) T 1vlm_A 46 LPEGRGVEIGVGTGRFAVPLK-----IKIGVEPSERMAEIARKR------GVFVLKGTAENLPLK 99 (219) T ss_dssp CCSSCEEEETCTTSTTHHHHT-----CCEEEESCHHHHHHHHHT------TCEEEECBTTBCCSC T ss_pred CCCCEEEEECCCCCHHHHHHH-----HEEEEECCHHHHHHHHHC------CCEEEECCHHHCCCC T ss_conf 899909998586779999775-----869994999999999986------998998777878998 No 182 >2aot_A HMT, histamine N-methyltransferase; classic methyltransferase fold, protein-drug complex; HET: CSO 2PM SAH; 1.90A {Homo sapiens} SCOP: c.66.1.19 PDB: 1jqd_A* 2aou_A* 2aov_A* 2aox_A* 1jqe_A* 2aow_A* Probab=97.54 E-value=0.00017 Score=47.00 Aligned_cols=47 Identities=19% Similarity=0.360 Sum_probs=36.7 Q ss_pred CCCEEEEECCCCCHHHHHHHHC-------CCCEEEEECCCCCCHHHHHHHHHHH Q ss_conf 9987999758988234677502-------3525998425543036887875322 Q gi|254780398|r 47 DGITVIEIGAGPGNLTQMLLTL-------GARKVIVIEKDQQFFPILKDISSQH 93 (284) Q Consensus 47 ~~~~VlEIGpG~G~LT~~Ll~~-------~~~~v~aiEiD~~~~~~l~~~~~~~ 93 (284) ++-.|||||||+|.+|..+++. ..-++++||+.+.+++.+++..... T Consensus 52 ~~~~VLdiGcG~G~~~~~il~~l~~~~~~~~~~~~~vD~s~~~l~~ak~~~~~~ 105 (292) T 2aot_A 52 SEIKILSIGGGAGEIDLQILSKVQAQYPGVCINNEVVEPSAEQIAKYKELVAKT 105 (292) T ss_dssp SEEEEEEETCTTSHHHHHHHHHHHHHSTTCEEEEEEECSCHHHHHHHHHHHHTC T ss_pred CCCEEEEECCCCCHHHHHHHHHHHHHCCCCCCEEEEEECCHHHHHHHHHHHHHH T ss_conf 998699987979977899999888744787775999989889999999998874 No 183 >2a14_A Indolethylamine N-methyltransferase; SGC,INMT, structural genomics, structural genomics consortium; HET: SAH; 1.70A {Homo sapiens} SCOP: c.66.1.15 Probab=97.51 E-value=0.00013 Score=47.73 Aligned_cols=50 Identities=20% Similarity=0.274 Sum_probs=42.6 Q ss_pred CCCCCCEEEEECCCCCHHHHHHHHCCCCEEEEECCCCCCHHHHHHHHHHH Q ss_conf 98999879997589882346775023525998425543036887875322 Q gi|254780398|r 44 GSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQH 93 (284) Q Consensus 44 ~~~~~~~VlEIGpG~G~LT~~Ll~~~~~~v~aiEiD~~~~~~l~~~~~~~ 93 (284) +..++..||+||||+|..+..+++.+..+|+++++.+.+++.+++..... T Consensus 52 ~~~~g~~vLDlGCG~G~~~~~~a~~~~~~V~giD~S~~~i~~a~~~~~~~ 101 (263) T 2a14_A 52 GGLQGDTLIDIGSGPTIYQVLAACDSFQDITLSDFTDRNREELEKWLKKE 101 (263) T ss_dssp TSCCEEEEEESSCTTCCGGGTTGGGTEEEEEEEESCHHHHHHHHHHHHTC T ss_pred CCCCCCEEEEECCCCCHHHHHHHHHCCCEEEEECCCHHHHHHHHHHHHHC T ss_conf 88899889997888628999999847976899518999999999999865 No 184 >1inl_A Spermidine synthase; beta-barrel, rossman fold, structural genomics, PSI, protein structure initiative; 1.50A {Thermotoga maritima} SCOP: c.66.1.17 PDB: 1jq3_A* Probab=97.43 E-value=0.0002 Score=46.55 Aligned_cols=78 Identities=19% Similarity=0.199 Sum_probs=59.1 Q ss_pred CCHHHHHHHHHHC---CCCCCCEEEEECCCCCHHHHHHHHCCC-CEEEEECCCCCCHHHHHHHHHH-----HHCCCCCCH Q ss_conf 3989999999971---989998799975898823467750235-2599842554303688787532-----200122000 Q gi|254780398|r 31 LDLNILKKIAESS---GSLDGITVIEIGAGPGNLTQMLLTLGA-RKVIVIEKDQQFFPILKDISSQ-----HPNRLEIIQ 101 (284) Q Consensus 31 ~d~~i~~~iv~~~---~~~~~~~VlEIGpG~G~LT~~Ll~~~~-~~v~aiEiD~~~~~~l~~~~~~-----~~~~~~ii~ 101 (284) .|+.+-+.+..+. -..+...||-||-|.|.+.+.+++..+ .+|++||+|+..++.+++-+.. .+.+++++. T Consensus 71 ~de~~YhE~l~h~pl~~~~~pk~VLiiGgG~G~~~~e~l~~~~~~~v~~VEID~~Vi~~a~~~~~~~~~~~~d~rv~ii~ 150 (296) T 1inl_A 71 KDEFMYHEMLAHVPMFLHPNPKKVLIIGGGDGGTLREVLKHDSVEKAILCEVDGLVIEAARKYLKQTSCGFDDPRAEIVI 150 (296) T ss_dssp TTHHHHHHHHHHHHHHHSSSCCEEEEEECTTCHHHHHHTTSTTCSEEEEEESCHHHHHHHHHHCHHHHGGGGCTTEEEEE T ss_pred CCCHHHHHHHHHHHHHHCCCCCEEEEECCCCHHHHHHHHHCCCCCCEEEECCCHHHHHHHHHHHHHHCCCCCCCCCEEEE T ss_conf 88203269887188761999787999879827999999964997717886357899999998767622433699608996 Q ss_pred HHHCCCC Q ss_conf 0000143 Q gi|254780398|r 102 DDALKVD 108 (284) Q Consensus 102 ~Dal~~d 108 (284) +|+.++- T Consensus 151 ~Da~~~l 157 (296) T 1inl_A 151 ANGAEYV 157 (296) T ss_dssp SCHHHHG T ss_pred HHHHHHH T ss_conf 1489999 No 185 >1tw3_A COMT, carminomycin 4-O-methyltransferase; anthracycline, methylate, tailoring enzyme, polyketide, S-adenosyl-L-homocystein; HET: SAH ERT; 2.35A {Streptomyces peucetius} SCOP: a.4.5.29 c.66.1.12 PDB: 1tw2_A* Probab=97.42 E-value=0.00083 Score=42.64 Aligned_cols=90 Identities=12% Similarity=0.195 Sum_probs=60.3 Q ss_pred HHHHHHCCCCCCCEEEEECCCCCHHHHHHHHCCCC-EEEEECCCCCCHHHHHHHHHH--HHCCCCCCHHHHCCCCHHHHC Q ss_conf 99999719899987999758988234677502352-599842554303688787532--200122000000014315521 Q gi|254780398|r 37 KKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGAR-KVIVIEKDQQFFPILKDISSQ--HPNRLEIIQDDALKVDFEKFF 113 (284) Q Consensus 37 ~~iv~~~~~~~~~~VlEIGpG~G~LT~~Ll~~~~~-~v~aiEiD~~~~~~l~~~~~~--~~~~~~ii~~Dal~~d~~~~~ 113 (284) ..+.+..+......||+||+|.|.++..++++.+. +++.++. +..++..++.... ..++++++.+|+.+- ++ T Consensus 173 ~~~~~~~~~~~~~~vlDvGgG~G~~~~~l~~~~p~~~~~~~D~-p~~~~~a~~~~~~~~l~~ri~~~~~d~~~~-~p--- 247 (360) T 1tw3_A 173 DAPAAAYDWTNVRHVLDVGGGKGGFAAAIARRAPHVSATVLEM-AGTVDTARSYLKDEGLSDRVDVVEGDFFEP-LP--- 247 (360) T ss_dssp HHHHHHSCCTTCSEEEEETCTTSHHHHHHHHHCTTCEEEEEEC-TTHHHHHHHHHHHTTCTTTEEEEECCTTSC-CS--- T ss_pred HHHHHHCCCCCCCEEEECCCCCCHHHHHHHHHCCCEEEEEEEC-HHHHHHHHHHHHHCCCCCCCEEECCCHHHC-CC--- T ss_conf 9999847964575798638998688999997589448999888-414799999998628874343513767542-78--- Q ss_pred CCCCCEEEEECCCHHHHHH Q ss_conf 3322201120232246788 Q gi|254780398|r 114 NISSPIRIIANLPYNIGTR 132 (284) Q Consensus 114 ~~~~~~~vvgNLPYnIss~ 132 (284) .+....+++++=++.+.+ T Consensus 248 -~~~D~v~~~~vlh~~~d~ 265 (360) T 1tw3_A 248 -RKADAIILSFVLLNWPDH 265 (360) T ss_dssp -SCEEEEEEESCGGGSCHH T ss_pred -CCCCEEEEEEEEECCCHH T ss_conf -767489873477539879 No 186 >2r6z_A UPF0341 protein in RSP 3' region; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; 1.80A {Neisseria gonorrhoeae} Probab=97.41 E-value=0.00012 Score=47.78 Aligned_cols=92 Identities=20% Similarity=0.185 Sum_probs=67.4 Q ss_pred HHHHHHCCCCCCCEEEEECCCCCHHHHHHHHCCCCEEEEECCCCCCHHHHHHHHHH---------HHCCCCCCHHHHCCC Q ss_conf 99999719899987999758988234677502352599842554303688787532---------200122000000014 Q gi|254780398|r 37 KKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQ---------HPNRLEIIQDDALKV 107 (284) Q Consensus 37 ~~iv~~~~~~~~~~VlEIGpG~G~LT~~Ll~~~~~~v~aiEiD~~~~~~l~~~~~~---------~~~~~~ii~~Dal~~ 107 (284) +-+++.++..++..||+..+|.|.-+-.++..++ +|++||.++.++..+++.... ...++++++||+.++ T Consensus 73 e~L~kA~g~~~~~~VLD~taGlG~Da~~lA~~G~-~V~~vE~sp~~~~Ll~~~l~~a~~~~~~~~~~~ri~~~~gDa~~~ 151 (258) T 2r6z_A 73 ELIAKAVNHTAHPTVWDATAGLGRDSFVLASLGL-TVTAFEQHPAVACLLSDGIRRALLNPETQDTAARINLHFGNAAEQ 151 (258) T ss_dssp CHHHHHTTGGGCCCEEETTCTTCHHHHHHHHTTC-CEEEEECCHHHHHHHHHHHHHHHHSHHHHHHHTTEEEEESCHHHH T ss_pred HHHHHHHCCCCCCEEEEECCCCHHHHHHHHHCCC-EEEEEECCHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHCCHHHH T ss_conf 4999985887898199907873599999997699-899996888999999999999996968767887557100759999 Q ss_pred CHHHHC-CCCCCEEEEECCCHHHH Q ss_conf 315521-33222011202322467 Q gi|254780398|r 108 DFEKFF-NISSPIRIIANLPYNIG 130 (284) Q Consensus 108 d~~~~~-~~~~~~~vvgNLPYnIs 130 (284) - ..+. ....+-.|+=..||... T Consensus 152 l-~~l~~~~~~~DvIylDPMf~~~ 174 (258) T 2r6z_A 152 M-PALVKTQGKPDIVYLDPMYPER 174 (258) T ss_dssp H-HHHHHHHCCCSEEEECCCC--- T ss_pred H-HHHHHCCCCCCEEEECCCCCCC T ss_conf 9-9999638998889988999752 No 187 >2pt6_A Spermidine synthase; transferase, structural genomics consortium, SGC,dcadoMet complex; HET: S4M 1PG; 2.00A {Plasmodium falciparum 3D7} PDB: 2pss_A* 2pt9_A* Probab=97.40 E-value=0.00024 Score=45.95 Aligned_cols=78 Identities=18% Similarity=0.224 Sum_probs=59.6 Q ss_pred CCHHHHHHHHHHC---CCCCCCEEEEECCCCCHHHHHHHHCCC-CEEEEECCCCCCHHHHHHHHHH-----HHCCCCCCH Q ss_conf 3989999999971---989998799975898823467750235-2599842554303688787532-----200122000 Q gi|254780398|r 31 LDLNILKKIAESS---GSLDGITVIEIGAGPGNLTQMLLTLGA-RKVIVIEKDQQFFPILKDISSQ-----HPNRLEIIQ 101 (284) Q Consensus 31 ~d~~i~~~iv~~~---~~~~~~~VlEIGpG~G~LT~~Ll~~~~-~~v~aiEiD~~~~~~l~~~~~~-----~~~~~~ii~ 101 (284) .|+.+-..+.-++ ...+.+.||-||.|.|.+.+++++..+ .+|++||+|+..++..++-+.. .+.+++++. T Consensus 97 ~de~~YhE~l~h~pl~~~~~pk~VLIiGgGdG~~~rellk~~~~~~v~~VEID~~Vv~~ak~~f~~~~~~~~dprv~v~~ 176 (321) T 2pt6_A 97 KDEFAYHEMMTHVPMTVSKEPKNVLVVGGGDGGIIRELCKYKSVENIDICEIDETVIEVSKIYFKNISCGYEDKRVNVFI 176 (321) T ss_dssp TTHHHHHHHHHHHHHHHSSSCCEEEEEECTTCHHHHHHTTCTTCCEEEEEESCHHHHHHHHHHCTTTSGGGGSTTEEEEE T ss_pred CCHHHHHHHHHHHHHHCCCCCCEEEEECCCCHHHHHHHHHCCCCCCEEEECCCHHHHHHHHHHHHHHCCCCCCCCEEEEE T ss_conf 65768889987168651999576999848953999999972996414785257999999998626623443687626996 Q ss_pred HHHCCCC Q ss_conf 0000143 Q gi|254780398|r 102 DDALKVD 108 (284) Q Consensus 102 ~Dal~~d 108 (284) +|+.++- T Consensus 177 ~Da~~~l 183 (321) T 2pt6_A 177 EDASKFL 183 (321) T ss_dssp SCHHHHH T ss_pred CHHHHHH T ss_conf 1699998 No 188 >3gwz_A MMCR; methyltransferase, mitomycin, S-adenosyl methionine, transferase; HET: MSE SAH; 1.91A {Streptomyces lavendulae} PDB: 3gxo_A* Probab=97.39 E-value=0.001 Score=42.02 Aligned_cols=91 Identities=15% Similarity=0.258 Sum_probs=62.3 Q ss_pred HHHHHHHCCCCCCCEEEEECCCCCHHHHHHHHCCCC-EEEEECCCCCCHHHHHHHHHH--HHCCCCCCHHHHCCCCHHHH Q ss_conf 999999719899987999758988234677502352-599842554303688787532--20012200000001431552 Q gi|254780398|r 36 LKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGAR-KVIVIEKDQQFFPILKDISSQ--HPNRLEIIQDDALKVDFEKF 112 (284) Q Consensus 36 ~~~iv~~~~~~~~~~VlEIGpG~G~LT~~Ll~~~~~-~v~aiEiD~~~~~~l~~~~~~--~~~~~~ii~~Dal~~d~~~~ 112 (284) ...+++..+......|++||+|.|.++..++++.|. +++.++. +..++..++.... ..++++++.+|+++ +++. T Consensus 191 ~~~~~~~~d~~~~~~vlDvGgG~G~~~~~l~~~~P~l~~~~~Dl-p~v~~~a~~~~~~~~~~~ri~~~~~d~f~-~~p~- 267 (369) T 3gwz_A 191 AGQVAAAYDFSGAATAVDIGGGRGSLMAAVLDAFPGLRGTLLER-PPVAEEARELLTGRGLADRCEILPGDFFE-TIPD- 267 (369) T ss_dssp HHHHHHHSCCTTCSEEEEETCTTSHHHHHHHHHCTTCEEEEEEC-HHHHHHHHHHHHHTTCTTTEEEEECCTTT-CCCS- T ss_pred HHHHHHHCCCCCCCEEEEECCCCCHHHHHHHHHCCCCEEEEEEC-HHHHHHHHHHHHHCCCCCCEEEECCCCCC-CCCC- T ss_conf 99998636876786798857888889999999789986999989-68889999877751777523685263233-5898- Q ss_pred CCCCCCEEEEECCCHHHHHH Q ss_conf 13322201120232246788 Q gi|254780398|r 113 FNISSPIRIIANLPYNIGTR 132 (284) Q Consensus 113 ~~~~~~~~vvgNLPYnIss~ 132 (284) +....++.|+=++.+-+ T Consensus 268 ---~~D~~~l~~vLh~~~d~ 284 (369) T 3gwz_A 268 ---GADVYLIKHVLHDWDDD 284 (369) T ss_dssp ---SCSEEEEESCGGGSCHH T ss_pred ---CCEEEEEECCCCCCCHH T ss_conf ---86099980433468828 No 189 >3dli_A Methyltransferase; PSI-II, NYSGXRC, structural genomics, protein structure initiative; 2.46A {Archaeoglobus fulgidus} Probab=97.38 E-value=0.0001 Score=48.26 Aligned_cols=55 Identities=13% Similarity=0.221 Sum_probs=41.4 Q ss_pred HHHHHHHHCC-CCCCCEEEEECCCCCHHHHHHHHCCCCEEEEECCCCCCHHHHHHHH Q ss_conf 9999999719-8999879997589882346775023525998425543036887875 Q gi|254780398|r 35 ILKKIAESSG-SLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDIS 90 (284) Q Consensus 35 i~~~iv~~~~-~~~~~~VlEIGpG~G~LT~~Ll~~~~~~v~aiEiD~~~~~~l~~~~ 90 (284) +..++...+. ..+++.|||||||.|.++..+.+.++ ++++||+.+..++.+++.. T Consensus 28 ~~~~l~~~i~~~~~~~~vLDiGCG~G~~~~~l~~~g~-~v~GiD~s~~~i~~a~~~~ 83 (240) T 3dli_A 28 VKARLRRYIPYFKGCRRVLDIGCGRGEFLELCKEEGI-ESIGVDINEDMIKFCEGKF 83 (240) T ss_dssp HHHHHGGGGGGTTTCSCEEEETCTTTHHHHHHHHHTC-CEEEECSCHHHHHHHHTTS T ss_pred HHHHHHHHHHCCCCCCEEEEECCCCCHHHHHHHHCCC-EEEEEECCHHHHHHHHHHC T ss_conf 9999999752268999699973878599999997799-5999967707878876511 No 190 >1uir_A Polyamine aminopropyltransferase; spermidien synthase, spermine synthase, riken structural genomics/proteomics initiative, RSGI; 2.00A {Thermus thermophilus} SCOP: c.66.1.17 Probab=97.38 E-value=0.00027 Score=45.64 Aligned_cols=78 Identities=18% Similarity=0.232 Sum_probs=58.0 Q ss_pred CCCHHHHHHHHHHC---CCCCCCEEEEECCCCCHHHHHHHHCCC-CEEEEECCCCCCHHHHHHHHHH------HHCCCCC Q ss_conf 23989999999971---989998799975898823467750235-2599842554303688787532------2001220 Q gi|254780398|r 30 LLDLNILKKIAESS---GSLDGITVIEIGAGPGNLTQMLLTLGA-RKVIVIEKDQQFFPILKDISSQ------HPNRLEI 99 (284) Q Consensus 30 L~d~~i~~~iv~~~---~~~~~~~VlEIGpG~G~LT~~Ll~~~~-~~v~aiEiD~~~~~~l~~~~~~------~~~~~~i 99 (284) -.|+.+-..+..+. ...+.+.||-||.|.|.+.+.+++..+ .+|++||+|+..++..++-+.. .+.++++ T Consensus 57 ~~de~~Yhe~l~h~~l~~~~~pk~vLiiG~G~G~~~~~ll~~~~~~~i~~VEiDp~Vi~~a~~~f~~~~~~~~~dprv~v 136 (314) T 1uir_A 57 ERDEYIYHETLVHPAMLTHPEPKRVLIVGGGEGATLREVLKHPTVEKAVMVDIDGELVEVAKRHMPEWHQGAFDDPRAVL 136 (314) T ss_dssp TTTHHHHHHHHHHHHHHHSSCCCEEEEEECTTSHHHHHHTTSTTCCEEEEEESCHHHHHHHHHHCHHHHTTGGGCTTEEE T ss_pred CCCHHHHHHHHHHHHHHHCCCCCEEEEECCCCHHHHHHHHHCCCCCEEEEECHHHHHHHHHHHCCCCCCCCCCCCCEEEE T ss_conf 44177889998888886099978799988983799999986599677987402189999987518301345356870699 Q ss_pred CHHHHCCC Q ss_conf 00000014 Q gi|254780398|r 100 IQDDALKV 107 (284) Q Consensus 100 i~~Dal~~ 107 (284) +.+|+..+ T Consensus 137 ~~~Da~~~ 144 (314) T 1uir_A 137 VIDDARAY 144 (314) T ss_dssp EESCHHHH T ss_pred EECHHHHH T ss_conf 97259999 No 191 >1xj5_A Spermidine synthase 1; structural genomics, protein structure initiative, CESG, AT1G23820, putrescine aminopropyl transferase, SPDS1; 2.70A {Arabidopsis thaliana} SCOP: c.66.1.17 PDB: 2q41_A Probab=97.36 E-value=0.0004 Score=44.60 Aligned_cols=77 Identities=14% Similarity=0.226 Sum_probs=59.7 Q ss_pred CCHHHHHHHHHHC---CCCCCCEEEEECCCCCHHHHHHHHCCC-CEEEEECCCCCCHHHHHHHHHH-----HHCCCCCCH Q ss_conf 3989999999971---989998799975898823467750235-2599842554303688787532-----200122000 Q gi|254780398|r 31 LDLNILKKIAESS---GSLDGITVIEIGAGPGNLTQMLLTLGA-RKVIVIEKDQQFFPILKDISSQ-----HPNRLEIIQ 101 (284) Q Consensus 31 ~d~~i~~~iv~~~---~~~~~~~VlEIGpG~G~LT~~Ll~~~~-~~v~aiEiD~~~~~~l~~~~~~-----~~~~~~ii~ 101 (284) .|+-+...+..+. .....+.||-||-|.|.+.+.+++..+ .+++.||+|+..++.+++-+.. .+.+++++. T Consensus 101 ~De~~YhEml~h~pl~~h~~PkrVLIIGgGdG~~~revlk~~~v~~v~~VEID~~Vi~~a~~~fp~~~~~~~dprv~iii 180 (334) T 1xj5_A 101 RDECAYQEMITHLPLCSIPNPKKVLVIGGGDGGVLREVARHASIEQIDMCEIDKMVVDVSKQFFPDVAIGYEDPRVNLVI 180 (334) T ss_dssp TTHHHHHHHHHHHHHTTSSCCCEEEEETCSSSHHHHHHTTCTTCCEEEEEESCHHHHHHHHHHCHHHHGGGGSTTEEEEE T ss_pred CCHHHHHHHHHHHHHHCCCCCCEEEEECCCCHHHHHHHHHCCCCCCCEEECCCHHHHHHHHHHHHHHCCCCCCCCEEEEE T ss_conf 66888889988888751999886999889948999999974996533575058999999997534430235799879998 Q ss_pred HHHCCC Q ss_conf 000014 Q gi|254780398|r 102 DDALKV 107 (284) Q Consensus 102 ~Dal~~ 107 (284) +|+.++ T Consensus 181 ~Dg~~~ 186 (334) T 1xj5_A 181 GDGVAF 186 (334) T ss_dssp SCHHHH T ss_pred CCHHHH T ss_conf 627999 No 192 >2vdw_A Vaccinia virus capping enzyme D1 subunit; nucleotidyltransferase, S-adenosyl-L-methionine, RNA metabolism, mRNA processing, methyltransferase, poxvirus; HET: SAH; 2.70A {Vaccinia virus} Probab=97.34 E-value=0.00032 Score=45.22 Aligned_cols=88 Identities=13% Similarity=0.134 Sum_probs=54.8 Q ss_pred HHHHHHHH--CCCCCCCEEEEECCCCCHHHHHHHHCCCCEEEEECCCCCCHHHHHHHHHHHHCC-----------CCCCH Q ss_conf 99999997--198999879997589882346775023525998425543036887875322001-----------22000 Q gi|254780398|r 35 ILKKIAES--SGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQHPNR-----------LEIIQ 101 (284) Q Consensus 35 i~~~iv~~--~~~~~~~~VlEIGpG~G~LT~~Ll~~~~~~v~aiEiD~~~~~~l~~~~~~~~~~-----------~~ii~ 101 (284) ++.+.+.- .+...+..||+||||.|.=+...++.++++|++|++++..++.+++.+.....+ ...+. T Consensus 34 lI~~~~~~~~~~~~~~~~VLDlgcG~GgDl~K~~~~~~~~vvGiDiS~~~I~~A~~R~~~~~~~~~~~~~~~~~~~~~~~ 113 (302) T 2vdw_A 34 LISMYCSKTFLDDSNKRKVLAIDFGNGADLEKYFYGEIALLVATDPDADAIARGNERYNKLNSGIKTKYYKFDYIQETIR 113 (302) T ss_dssp HHHHHTCTTTSSCCSCCEEEETTCTTTTTHHHHHHTTCSEEEEEESCHHHHHHHHHHHHHHCC----CCCEEEEEECCTT T ss_pred HHHHHHHHHHCCCCCCCEEEEEEEEECHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHHCCCCCCCHHCCCCHHHHHH T ss_conf 99999877502688899799995000452799996699889999798999999999999721243310001330599986 Q ss_pred HHHCCCCHHHHCCCCCCEEEEE Q ss_conf 0000143155213322201120 Q gi|254780398|r 102 DDALKVDFEKFFNISSPIRIIA 123 (284) Q Consensus 102 ~Dal~~d~~~~~~~~~~~~vvg 123 (284) +|.....+.+.+. ...+-+|+ T Consensus 114 ~d~~~~~~~~~~~-~~~FDvVs 134 (302) T 2vdw_A 114 SDTFVSSVREVFY-FGKFNIID 134 (302) T ss_dssp SSSHHHHHHTTCC-SSCEEEEE T ss_pred CCHHHHHHHHHCC-CCCEEEEE T ss_conf 1132444553047-89756999 No 193 >3bzb_A Uncharacterized protein; RED ALGA, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; 2.79A {Cyanidioschyzon merolae strain 10D} Probab=97.32 E-value=0.0003 Score=45.43 Aligned_cols=60 Identities=22% Similarity=0.342 Sum_probs=47.6 Q ss_pred HHHHHHHHHHCCCCCCCEEEEECCCCCHHHHHHHHCCCCEEEEECC-CCCCHHHHHHHHHH Q ss_conf 8999999997198999879997589882346775023525998425-54303688787532 Q gi|254780398|r 33 LNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEK-DQQFFPILKDISSQ 92 (284) Q Consensus 33 ~~i~~~iv~~~~~~~~~~VlEIGpG~G~LT~~Ll~~~~~~v~aiEi-D~~~~~~l~~~~~~ 92 (284) .-+++.+.+......+.+|||+|+|.|..+..++..+++.|++.+. |+.++..++.+... T Consensus 65 ~~La~~L~~~~~~~~Gk~VLELGaGtGl~gl~aA~~ga~~Vv~tD~~~~~~~~~l~~Nv~~ 125 (281) T 3bzb_A 65 RALADTLCWQPELIAGKTVCELGAGAGLVSIVAFLAGADQVVATDYPDPEILNSLESNIRE 125 (281) T ss_dssp HHHHHHHHHCGGGTTTCEEEETTCTTSHHHHHHHHTTCSEEEEEECSCHHHHHHHHHHHHT T ss_pred HHHHHHHHHCHHHCCCCEEEEECCHHHHHHHHHHHHCCCEEEEEECCCHHHHHHHHHHHHH T ss_conf 9999999839233099829997855229999999858987999976967889999999998 No 194 >3hp7_A Hemolysin, putative; structural genomics, APC64019, PSI-2, protein structure initiative; HET: MSE; 1.53A {Streptococcus thermophilus lmg 18311} Probab=97.32 E-value=0.002 Score=40.23 Aligned_cols=176 Identities=17% Similarity=0.208 Sum_probs=92.2 Q ss_pred CCCCEEEEECCCCCHHHHHHHHCCCCEEEEECCCCC-CHHHHHHHHHHHHCCCCCCHH-HHCCCCHHHHCCCCCCEEEEE Q ss_conf 999879997589882346775023525998425543-036887875322001220000-000143155213322201120 Q gi|254780398|r 46 LDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQ-FFPILKDISSQHPNRLEIIQD-DALKVDFEKFFNISSPIRIIA 123 (284) Q Consensus 46 ~~~~~VlEIGpG~G~LT~~Ll~~~~~~v~aiEiD~~-~~~~l~~~~~~~~~~~~ii~~-Dal~~d~~~~~~~~~~~~vvg 123 (284) ..+..+|+||+-+|..|.-||+++|++|+||+.-.. |...| ... .++.+..+ |+-.+...++.. ..+-.++. T Consensus 84 v~gkicLDIGaSTGGFTdvLLq~GA~~VyaVDVG~~QL~~~L----r~D-~RV~~~E~tN~R~l~~~~~~~-~~~Dliv~ 157 (291) T 3hp7_A 84 VEDMITIDIGASTGGFTDVMLQNGAKLVYAVDVGTNQLVWKL----RQD-DRVRSMEQYNFRYAEPVDFTE-GLPSFASI 157 (291) T ss_dssp CTTCEEEEETCTTSHHHHHHHHTTCSEEEEECSSSSCSCHHH----HTC-TTEEEECSCCGGGCCGGGCTT-CCCSEEEE T ss_pred CCCEEEEECCCCCCCHHHHHHHCCCCEEEEEECCCCCCCHHH----HCC-CCEEEECCCCHHHHHHHHHCC-CCCCEEEE T ss_conf 166699977878750999999849876999835722105998----659-985431276386602866177-78777885 Q ss_pred CCCHHHHHHHHHHHHHHHCCCCCCCHHHHEE--EHHHHHHHHHCCC---HHHH--HHHHHHHCCCCCEEEECCCCCCEEC Q ss_conf 2322467889999985201000000110203--3447887530123---1233--2345432013320120001100001 Q gi|254780398|r 124 NLPYNIGTRLLFNWISADTWPPFWESLTLLF--QKEVGERITAQKN---SPHY--GRLSVLTGWRTKATMMFDISPHVFF 196 (284) Q Consensus 124 NLPYnIss~Il~~ll~~~~~~~~~~~~vlmv--QkEvA~Rl~a~pg---~k~Y--g~LSv~~q~~~~v~~~~~V~~~~F~ 196 (284) -+-|==-+.|+-.+..... + -..++.++ |-|++..-+.+-| ++.. -.+.-...++. ..-+.+-....+ T Consensus 158 DvSFISl~~iLp~~~~ll~-~--~~~~i~LiKPQFE~g~~~v~k~GvVkd~~~~~~vi~~v~~~~~--~~g~~~~~~~~S 232 (291) T 3hp7_A 158 DVSFISLNLILPALAKILV-D--GGQVVALVKPQFEAGREQIGKNGIVRESSIHEKVLETVTAFAV--DYGFSVKGLDFS 232 (291) T ss_dssp CCSSSCGGGTHHHHHHHSC-T--TCEEEEEECGGGTSCGGGCC-CCCCCCHHHHHHHHHHHHHHHH--HTTEEEEEEEEC T ss_pred ECCHHHHHHHHHHHHHHHH-C--CCEEEEEECCCCCCCHHHCCCCCEECCHHHHHHHHHHHHHHHH--HCCCEEEEEEEC T ss_conf 0221219999999999970-8--8759999887542575342889877799999999999999999--789979567847 Q ss_pred CCCCCCE---EEEEECCCCCCCCCCHHHHHHHHHHHHCC Q ss_conf 0578757---88730125885534767899999999727 Q gi|254780398|r 197 PSPKVTS---TVIHFIPHLNPIPCCLESLKKITQEAFGK 232 (284) Q Consensus 197 P~PkVdS---~vi~l~pk~~~~~~~~~~~~~~~~~~F~~ 232 (284) |...=+. -++.+++...+.......+..++..+|.. T Consensus 233 pI~G~~GN~Eyl~~~~k~~~~~~~~~~~i~~~v~~a~~~ 271 (291) T 3hp7_A 233 PIQGGHGNIEFLAHLEKTDSPQNDVPTSIKEVVAQAHKE 271 (291) T ss_dssp SSCCGGGCCCEEEEEEECSSCCBSCGGGHHHHHHHHHHH T ss_pred CCCCCCCCHHHHHHEEECCCCCCCCHHHHHHHHHHHHHH T ss_conf 898987438556240526887765267899999999998 No 195 >2i7c_A Spermidine synthase; transferase, structural genomics consortium, SGC; HET: AAT 1PG; 1.71A {Plasmodium falciparum 3D7} PDB: 2hte_A* 3b7p_A* 2pwp_A* Probab=97.31 E-value=0.00035 Score=44.94 Aligned_cols=76 Identities=18% Similarity=0.257 Sum_probs=57.7 Q ss_pred CHHHHHHHHHHC---CCCCCCEEEEECCCCCHHHHHHHHCCC-CEEEEECCCCCCHHHHHHHHHH-----HHCCCCCCHH Q ss_conf 989999999971---989998799975898823467750235-2599842554303688787532-----2001220000 Q gi|254780398|r 32 DLNILKKIAESS---GSLDGITVIEIGAGPGNLTQMLLTLGA-RKVIVIEKDQQFFPILKDISSQ-----HPNRLEIIQD 102 (284) Q Consensus 32 d~~i~~~iv~~~---~~~~~~~VlEIGpG~G~LT~~Ll~~~~-~~v~aiEiD~~~~~~l~~~~~~-----~~~~~~ii~~ 102 (284) |+-+-+.+.-++ -..+.+.||-||-|.|.+.+.+++..+ .++++||+|+..++..++-+.. .+.+++++.+ T Consensus 60 de~~Yhe~l~h~~~~~~~~pk~vLiiGgG~G~~~~ellk~~~~~~i~~VEiD~~Vi~~a~~~f~~~~~~~~d~rv~v~~~ 139 (283) T 2i7c_A 60 DEFAYHEMMTHVPMTVSKEPKNVLVVGGGDGGIIRELCKYKSVENIDICEIDETVIEVSKIYFKNISCGYEDKRVNVFIE 139 (283) T ss_dssp THHHHHHHHHHHHHTTSSSCCEEEEEECTTSHHHHHHTTCTTCCEEEEEESCHHHHHHHHHHCTTTSGGGGSTTEEEEES T ss_pred CCCCHHHHHHHHHHHCCCCCCEEEEECCCCHHHHHHHHHCCCCCEEEEECCCHHHHHHHHHHHHHCCCCCCCCCCCEEEC T ss_conf 74315799987886529982449998388349999999749963799974789999999987465024224876528960 Q ss_pred HHCCC Q ss_conf 00014 Q gi|254780398|r 103 DALKV 107 (284) Q Consensus 103 Dal~~ 107 (284) |+.++ T Consensus 140 Da~~~ 144 (283) T 2i7c_A 140 DASKF 144 (283) T ss_dssp CHHHH T ss_pred HHHHH T ss_conf 68999 No 196 >3bwc_A Spermidine synthase; SAM, SGPP, structural genomics, PSI, protein structure initiative; HET: MSE SAM; 2.30A {Trypanosoma cruzi strain cl brener} PDB: 3bwb_A* Probab=97.27 E-value=0.00066 Score=43.28 Aligned_cols=77 Identities=18% Similarity=0.240 Sum_probs=58.2 Q ss_pred CCHHHHHHHHHHC---CCCCCCEEEEECCCCCHHHHHHHHCCC-CEEEEECCCCCCHHHHHHHHHH-----HHCCCCCCH Q ss_conf 3989999999971---989998799975898823467750235-2599842554303688787532-----200122000 Q gi|254780398|r 31 LDLNILKKIAESS---GSLDGITVIEIGAGPGNLTQMLLTLGA-RKVIVIEKDQQFFPILKDISSQ-----HPNRLEIIQ 101 (284) Q Consensus 31 ~d~~i~~~iv~~~---~~~~~~~VlEIGpG~G~LT~~Ll~~~~-~~v~aiEiD~~~~~~l~~~~~~-----~~~~~~ii~ 101 (284) .|+.+-..+.-+. ...+.+.||-||-|.|.+.+++++..+ .+|+.||+|+..++..++-+.. .+.+++++. T Consensus 76 ~De~~YhE~l~h~~l~~h~~pk~VLIiGgGdG~~~rellk~~~v~~v~~VEID~~Vi~~~~~~~p~~~~~~~dprv~iii 155 (304) T 3bwc_A 76 YDEFVYHEVLGHTSLCSHPKPERVLIIGGGDGGVLREVLRHGTVEHCDLVDIDGEVMEQSKQHFPQISRSLADPRATVRV 155 (304) T ss_dssp TTHHHHHHHHHHHHHTTSSSCCEEEEEECTTSHHHHHHHTCTTCCEEEEEESCHHHHHHHHHHCHHHHGGGGCTTEEEEE T ss_pred CCHHHHHHHHHHHHHHCCCCCCEEEEECCCCHHHHHHHHHCCCCCEEEEEECCHHHHHHHHHHCHHHHCCCCCCCEEEEE T ss_conf 65888999988888743999786999838937999999965994279998058899999998654430111498648998 Q ss_pred HHHCCC Q ss_conf 000014 Q gi|254780398|r 102 DDALKV 107 (284) Q Consensus 102 ~Dal~~ 107 (284) +|+.++ T Consensus 156 ~D~~~~ 161 (304) T 3bwc_A 156 GDGLAF 161 (304) T ss_dssp SCHHHH T ss_pred CHHHHH T ss_conf 669999 No 197 >1iy9_A Spermidine synthase; rossmann fold, structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 2.30A {Bacillus subtilis} SCOP: c.66.1.17 Probab=97.27 E-value=0.00041 Score=44.53 Aligned_cols=117 Identities=14% Similarity=0.188 Sum_probs=72.4 Q ss_pred CHHHHHHHHHHCC---CCCCCEEEEECCCCCHHHHHHHHCCC-CEEEEECCCCCCHHHHHHHHHH-----HHCCCCCCHH Q ss_conf 9899999999719---89998799975898823467750235-2599842554303688787532-----2001220000 Q gi|254780398|r 32 DLNILKKIAESSG---SLDGITVIEIGAGPGNLTQMLLTLGA-RKVIVIEKDQQFFPILKDISSQ-----HPNRLEIIQD 102 (284) Q Consensus 32 d~~i~~~iv~~~~---~~~~~~VlEIGpG~G~LT~~Ll~~~~-~~v~aiEiD~~~~~~l~~~~~~-----~~~~~~ii~~ 102 (284) |+.+-+.++-+.. ..+.+.||-||-|.|.+.+.+++..+ .+|+.||+|+..++..++-+.. .+.+++++.+ T Consensus 57 de~~Yhe~l~h~~l~~~~~pk~VLiiGgG~G~~~~~~l~~~~~~~v~~VEiD~~Vi~~a~~~~~~~~~~~~dprv~i~~~ 136 (275) T 1iy9_A 57 DEFVYHEMVAHVPLFTHPNPEHVLVVGGGDGGVIREILKHPSVKKATLVDIDGKVIEYSKKFLPSIAGKLDDPRVDVQVD 136 (275) T ss_dssp THHHHHHHHHHHHHHHSSSCCEEEEESCTTCHHHHHHTTCTTCSEEEEEESCHHHHHHHHHHCHHHHTTTTSTTEEEEES T ss_pred CCCHHHHHHHHHHHHCCCCCCEEEEEECCCHHHHHHHHHCCCCCEEEEEEECHHHHHHHHHHCHHHCCCCCCCCCEEEEC T ss_conf 80066799877887509996759999079639999999659964699997088999999985723135323877438988 Q ss_pred HHCCCCHHHHCCCCCCEEE-EEC------CCHHHHHHHHHHHHHHHCCCCCCCHHHHEEEH Q ss_conf 0001431552133222011-202------32246788999998520100000011020334 Q gi|254780398|r 103 DALKVDFEKFFNISSPIRI-IAN------LPYNIGTRLLFNWISADTWPPFWESLTLLFQK 156 (284) Q Consensus 103 Dal~~d~~~~~~~~~~~~v-vgN------LPYnIss~Il~~ll~~~~~~~~~~~~vlmvQk 156 (284) |+.++--. ....|-+ |.. .|.+.-|+=....+.....+. .+++.|- T Consensus 137 Da~~~l~~----~~~~yDvIi~D~~~p~~~~~~L~t~eFy~~~~~~L~~~----Gv~v~q~ 189 (275) T 1iy9_A 137 DGFMHIAK----SENQYDVIMVDSTEPVGPAVNLFTKGFYAGIAKALKED----GIFVAQT 189 (275) T ss_dssp CSHHHHHT----CCSCEEEEEESCSSCCSCCCCCSTTHHHHHHHHHEEEE----EEEEEEC T ss_pred HHHHHHHC----CCCCCCEEEEECCCCCCCCHHHCCHHHHHHHHHHHCCC----CEEEECC T ss_conf 58998750----56776789993899887212116899999999874799----7999856 No 198 >2g72_A Phenylethanolamine N-methyltransferase; HET: SAM F21; 2.00A {Homo sapiens} SCOP: c.66.1.15 PDB: 1yz3_A* 2an4_A* 2an5_A* 2g70_A* 2g71_A* 2an3_A* 2g8n_A* 2ony_A* 3hcb_A* 3hcc_A* 3hcd_A* 3hcf_A* 3kpj_A* 3kpu_A* 3kpv_A* 3kpw_A* 3kpy_A* 3kqm_A* 3kqo_A* 3kqp_A* ... Probab=97.26 E-value=0.00095 Score=42.28 Aligned_cols=51 Identities=20% Similarity=0.249 Sum_probs=42.1 Q ss_pred CCCCCCEEEEECCCCCHHHHHHHHCCCCEEEEECCCCCCHHHHHHHHHHHH Q ss_conf 989998799975898823467750235259984255430368878753220 Q gi|254780398|r 44 GSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQHP 94 (284) Q Consensus 44 ~~~~~~~VlEIGpG~G~LT~~Ll~~~~~~v~aiEiD~~~~~~l~~~~~~~~ 94 (284) +...|+.|||||+|+|.++...+..++++|++++..+.+++.+++.....+ T Consensus 68 g~~~G~~lLDvG~Gpgi~~~l~a~~~~~~I~~~D~s~~~~~~~~kw~~~~~ 118 (289) T 2g72_A 68 GEVSGRTLIDIGSGPTVYQLLSACSHFEDITMTDFLEVNRQELGRWLQEEP 118 (289) T ss_dssp SCSCCSEEEEETCTTCCGGGTTGGGGCSEEEEECSCHHHHHHHHHHHTTCT T ss_pred CCCCCCEEEEECCCCCHHHHHHHCCCCCEEEEECCCHHHHHHHHHHHHCCC T ss_conf 887898899957471367888756467814885498999999998875287 No 199 >2o07_A Spermidine synthase; structural genomics, structural genomics consortium, SGC, transferase; HET: SPD MTA; 1.89A {Homo sapiens} SCOP: c.66.1.17 PDB: 2o06_A* 2o05_A* 2o0l_A* Probab=97.18 E-value=0.00061 Score=43.50 Aligned_cols=77 Identities=16% Similarity=0.238 Sum_probs=59.0 Q ss_pred CCHHHHHHHHHHC---CCCCCCEEEEECCCCCHHHHHHHHCC-CCEEEEECCCCCCHHHHHHHHHH-----HHCCCCCCH Q ss_conf 3989999999971---98999879997589882346775023-52599842554303688787532-----200122000 Q gi|254780398|r 31 LDLNILKKIAESS---GSLDGITVIEIGAGPGNLTQMLLTLG-ARKVIVIEKDQQFFPILKDISSQ-----HPNRLEIIQ 101 (284) Q Consensus 31 ~d~~i~~~iv~~~---~~~~~~~VlEIGpG~G~LT~~Ll~~~-~~~v~aiEiD~~~~~~l~~~~~~-----~~~~~~ii~ 101 (284) .|+-+-+.+.-+. .....+.||-||-|.|.+.+.+++.. ..+|+.||+|+..++..++-+.. .+.+++++. T Consensus 76 ~de~~YhE~l~h~pl~~~~~pk~VLIiGgG~G~~~~ellk~~~~~~v~~VEiD~~Vi~~a~~~~~~~~~~~~dpRv~i~~ 155 (304) T 2o07_A 76 RDEFSYQEMIANLPLCSHPNPRKVLIIGGGDGGVLREVVKHPSVESVVQCEIDEDVIQVSKKFLPGMAIGYSSSKLTLHV 155 (304) T ss_dssp TTHHHHHHHHHHHHHTTSSSCCEEEEEECTTSHHHHHHTTCTTCCEEEEEESCHHHHHHHHHHCHHHHGGGGCTTEEEEE T ss_pred CCHHHHHHHHHHHHHHCCCCCCEEEEECCCCHHHHHHHHHCCCCCEEEEECCCHHHHHHHHHHHHHHCCCCCCCCEEEEE T ss_conf 64888889888799861999786999879945999999865985326876046999999998555533443577248996 Q ss_pred HHHCCC Q ss_conf 000014 Q gi|254780398|r 102 DDALKV 107 (284) Q Consensus 102 ~Dal~~ 107 (284) +|+.++ T Consensus 156 ~Da~~~ 161 (304) T 2o07_A 156 GDGFEF 161 (304) T ss_dssp SCHHHH T ss_pred HHHHHH T ss_conf 079999 No 200 >2b2c_A Spermidine synthase; beta-alpha, transferase; 2.50A {Caenorhabditis elegans} SCOP: c.66.1.17 Probab=97.13 E-value=0.00045 Score=44.32 Aligned_cols=77 Identities=19% Similarity=0.269 Sum_probs=57.7 Q ss_pred CHHHHHHHHHHC---CCCCCCEEEEECCCCCHHHHHHHHCCC-CEEEEECCCCCCHHHHHHHHHH----H-HCCCCCCHH Q ss_conf 989999999971---989998799975898823467750235-2599842554303688787532----2-001220000 Q gi|254780398|r 32 DLNILKKIAESS---GSLDGITVIEIGAGPGNLTQMLLTLGA-RKVIVIEKDQQFFPILKDISSQ----H-PNRLEIIQD 102 (284) Q Consensus 32 d~~i~~~iv~~~---~~~~~~~VlEIGpG~G~LT~~Ll~~~~-~~v~aiEiD~~~~~~l~~~~~~----~-~~~~~ii~~ 102 (284) |+-+-+.+.-+. ...+.+.||=||-|.|.+.+++++..+ .+|++||+|+..++..++-+.. + +.+++++.+ T Consensus 90 De~~YhE~l~h~pl~~~~~pk~VLIiGgGdG~~~rellk~~~v~~v~~VEID~~Vi~~a~~~~~~~~~~~~dprv~i~~~ 169 (314) T 2b2c_A 90 DEFSYQEMLAHLPMFAHPDPKRVLIIGGGDGGILREVLKHESVEKVTMCEIDEMVIDVAKKFLPGMSCGFSHPKLDLFCG 169 (314) T ss_dssp SSSHHHHHHHHHHHHHSSSCCEEEEESCTTSHHHHHHTTCTTCCEEEEECSCHHHHHHHHHHCTTTSGGGGCTTEEEECS T ss_pred CHHHHHHHHHHHHHHCCCCCCEEEEECCCCHHHHHHHHHCCCCCEEEEEEECHHHHHHHHHHCHHHCCCCCCCCEEEEEC T ss_conf 58888998764786539997879998898469999999749954589996088999999763633225456665279971 Q ss_pred HHCCCC Q ss_conf 000143 Q gi|254780398|r 103 DALKVD 108 (284) Q Consensus 103 Dal~~d 108 (284) |+.++- T Consensus 170 Da~~~l 175 (314) T 2b2c_A 170 DGFEFL 175 (314) T ss_dssp CHHHHH T ss_pred HHHHHH T ss_conf 089997 No 201 >3ldu_A Putative methylase; structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG; HET: MSE GTP; 1.70A {Clostridium difficile} Probab=97.11 E-value=0.0013 Score=41.40 Aligned_cols=94 Identities=16% Similarity=0.146 Sum_probs=73.9 Q ss_pred CCHHHHHHHHHHCCCCCCCEEEEECCCCCHHHHHHHHC--------------------------------------CC-C Q ss_conf 39899999999719899987999758988234677502--------------------------------------35-2 Q gi|254780398|r 31 LDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTL--------------------------------------GA-R 71 (284) Q Consensus 31 ~d~~i~~~iv~~~~~~~~~~VlEIGpG~G~LT~~Ll~~--------------------------------------~~-~ 71 (284) +.++++.-|+..++...++.+++==||.|+|-.+-+-. .+ - T Consensus 179 LretLAaall~l~~~~~~~~l~DPmCGSGTilIEAal~a~~~~pg~~r~f~f~~~~~~~~~~w~~~~~~~~~~~~~~~~~ 258 (385) T 3ldu_A 179 IRETLAAGLIYLTPWKAGRVLVDPMCGSGTILIEAAMIGINMAPGLNREFISEKWRTLDKKIWWDVRKDAFNKIDNESKF 258 (385) T ss_dssp CCHHHHHHHHHTSCCCTTSCEEETTCTTCHHHHHHHHHHTTCCTTTTSCCGGGGCTTSCHHHHHHHHHHHHHHSCCSCCC T ss_pred CCHHHHHHHHHHCCCCCCCCCCCCCCCCCHHHHHHHHHHHCCCCCCCCCHHHHHHHCCCHHHHHHHHHHHHHHHCCCCCC T ss_conf 77999999999637889985578889956799999999808797756223443221268899999999998632046678 Q ss_pred EEEEECCCCCCHHHHHHHHH--HHHCCCCCCHHHHCCCCHHHHCCCCCCEEEEECCCHHH Q ss_conf 59984255430368878753--22001220000000143155213322201120232246 Q gi|254780398|r 72 KVIVIEKDQQFFPILKDISS--QHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNI 129 (284) Q Consensus 72 ~v~aiEiD~~~~~~l~~~~~--~~~~~~~ii~~Dal~~d~~~~~~~~~~~~vvgNLPYnI 129 (284) .+++.++|+..+...+.+.. +..+.+++.++|+.+...+ ..+..||.|+||.. T Consensus 259 ~i~g~D~d~~~i~~a~~N~~~agv~~~i~~~~~d~~~~~~~-----~~~~~ivtNPPYG~ 313 (385) T 3ldu_A 259 KIYGYDIDEESIDIARENAEIAGVDEYIEFNVGDATQFKSE-----DEFGFIITNPPYGE 313 (385) T ss_dssp CEEEEESCHHHHHHHHHHHHHHTCGGGEEEEECCGGGCCCS-----CBSCEEEECCCCCC T ss_pred CEEEECCCHHHHHHHHHHHHHCCCCCCEEEEECCHHHCCCC-----CCCCEEEECCCCCC T ss_conf 67996587889999999999739976378875458775999-----99987995897020 No 202 >1m6y_A S-adenosyl-methyltransferase MRAW; SAM-dependent methyltransferase fold, protein-cofactor product complex, structural genomics, PSI; HET: SAH; 1.90A {Thermotoga maritima} SCOP: a.60.13.1 c.66.1.23 PDB: 1n2x_A* Probab=97.06 E-value=0.00062 Score=43.45 Aligned_cols=78 Identities=14% Similarity=0.242 Sum_probs=69.2 Q ss_pred CCHHHHHHHHHHCCCCCCCEEEEECCCCCHHHHHHHHCCCC-EEEEECCCCCCHHHHHHHHHHHHCCCCCCHHHHCCCC Q ss_conf 39899999999719899987999758988234677502352-5998425543036887875322001220000000143 Q gi|254780398|r 31 LDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGAR-KVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVD 108 (284) Q Consensus 31 ~d~~i~~~iv~~~~~~~~~~VlEIGpG~G~LT~~Ll~~~~~-~v~aiEiD~~~~~~l~~~~~~~~~~~~ii~~Dal~~d 108 (284) .-+..++.+++.+.+.++..+++---|.|.=|.+||++.+. +|+|++.|+.....+++.+..+++++.++++++-.++ T Consensus 10 H~PVll~Evl~~L~~~~~g~~vD~T~G~GGHs~~iL~~~~~~~liaiDrD~~ai~~a~~~l~~~~~r~~~~~~~f~~l~ 88 (301) T 1m6y_A 10 HIPVMVREVIEFLKPEDEKIILDCTVGEGGHSRAILEHCPGCRIIGIDVDSEVLRIAEEKLKEFSDRVSLFKVSYREAD 88 (301) T ss_dssp CCCTTHHHHHHHHCCCTTCEEEETTCTTSHHHHHHHHHCTTCEEEEEESCHHHHHHHHHHTGGGTTTEEEEECCGGGHH T ss_pred CCCHHHHHHHHHCCCCCCCEEEECCCCCCHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHCCCCCCCCCCCCCHHH T ss_conf 2634199999836838999999918897199999997399984999838889999999876412431000012321168 No 203 >3i53_A O-methyltransferase; CO-complex, rossmann-like fold; HET: SAH; 2.08A {Streptomyces carzinostaticus subsp} PDB: 3i58_A* 3i5u_A* 3i64_A* Probab=97.04 E-value=0.00081 Score=42.70 Aligned_cols=61 Identities=16% Similarity=0.154 Sum_probs=44.5 Q ss_pred CCCCCEEEEECCCCCHHHHHHHHCCCC-EEEEECCCCCCHHHHHHHHHH--HHCCCCCCHHHHCC Q ss_conf 899987999758988234677502352-599842554303688787532--20012200000001 Q gi|254780398|r 45 SLDGITVIEIGAGPGNLTQMLLTLGAR-KVIVIEKDQQFFPILKDISSQ--HPNRLEIIQDDALK 106 (284) Q Consensus 45 ~~~~~~VlEIGpG~G~LT~~Ll~~~~~-~v~aiEiD~~~~~~l~~~~~~--~~~~~~ii~~Dal~ 106 (284) ......|++||+|.|.++..++++.+. +++.++.+ ..++..++.... ...+++++.+|+.+ T Consensus 167 ~~~~~~vlDvGgG~G~~~~~l~~~~P~~~~~~~Dlp-~~~~~a~~~~~~~~~~~ri~~~~~d~~~ 230 (332) T 3i53_A 167 WAALGHVVDVGGGSGGLLSALLTAHEDLSGTVLDLQ-GPASAAHRRFLDTGLSGRAQVVVGSFFD 230 (332) T ss_dssp CGGGSEEEEETCTTSHHHHHHHHHCTTCEEEEEECH-HHHHHHHHHHHHTTCTTTEEEEECCTTS T ss_pred CCCCCEEEECCCCCCHHHHHHHHHCCCCEEEEEECH-HHHHHHHHHHHHCCCCCCEEEECCCCCC T ss_conf 646747875289976999999997899869999784-3899999875641678745773375123 No 204 >2cmg_A Spermidine synthase; transferase, putrescine aminopropyltransferase, spermidine biosynthesis, polyamine biosynthesis, SPEE; 2.0A {Helicobacter pylori} PDB: 2cmh_A Probab=96.94 E-value=0.00058 Score=43.60 Aligned_cols=92 Identities=9% Similarity=-0.004 Sum_probs=62.7 Q ss_pred CHHHHHHHHHHC---CCCCCCEEEEECCCCCHHHHHHHHCCCCEEEEECCCCCCHHHHHHHHHHH-HCCCCCCHHHHCCC Q ss_conf 989999999971---98999879997589882346775023525998425543036887875322-00122000000014 Q gi|254780398|r 32 DLNILKKIAESS---GSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQH-PNRLEIIQDDALKV 107 (284) Q Consensus 32 d~~i~~~iv~~~---~~~~~~~VlEIGpG~G~LT~~Ll~~~~~~v~aiEiD~~~~~~l~~~~~~~-~~~~~ii~~Dal~~ 107 (284) |+-+-+.++.+. -..+.+.||-||.|.|...+++++- +.+|+.||+|+..++.+++-+... +.+++++.+|+.++ T Consensus 54 ~~~~yhE~l~h~pl~~hp~pk~VLiIGgG~G~~~re~lk~-~~~v~~VEiD~~Vi~~a~~~fp~~~d~r~~~~~~D~~~~ 132 (262) T 2cmg_A 54 FLHIESELLAHMGGCTKKELKEVLIVDGFDLELAHQLFKY-DTHIDFVQADEKILDSFISFFPHFHEVKNNKNFTHAKQL 132 (262) T ss_dssp GTHHHHHHHHHHHHTTSSCCCEEEEESSCCHHHHHHHTTS-SCEEEEECSCHHHHGGGTTTSTTHHHHHTCTTEEEESSG T ss_pred CCCCCHHHHHHHHHHCCCCCCEEEEECCCCHHHHHHHHCC-CCEEEEEEECHHHHHHHHHHCCCCCCCCCCHHHHHHHHH T ss_conf 4331228764578753998677999459966999998458-974799983899999999868422354336015579999 Q ss_pred CHHHHCCCCCCEEEE---ECCCHH Q ss_conf 315521332220112---023224 Q gi|254780398|r 108 DFEKFFNISSPIRII---ANLPYN 128 (284) Q Consensus 108 d~~~~~~~~~~~~vv---gNLPYn 128 (284) -- .....|-+| +.-|+. T Consensus 133 l~----~~~~~yDvIi~D~~dp~~ 152 (262) T 2cmg_A 133 LD----LDIKKYDLIFCLQEPDIH 152 (262) T ss_dssp GG----SCCCCEEEEEESSCCCHH T ss_pred HH----HCCCCCCEEEECCCCCCH T ss_conf 86----154677889988999731 No 205 >3k0b_A Predicted N6-adenine-specific DNA methylase; methylase,PF01170, putative RNA methylase, PSI,MCSG, structural genomics; 1.50A {Listeria monocytogenes str} Probab=96.91 E-value=0.0032 Score=39.02 Aligned_cols=94 Identities=13% Similarity=0.092 Sum_probs=74.1 Q ss_pred CCHHHHHHHHHHCCCCCCCEEEEECCCCCHHHHHHHHC---------------------------------------CCC Q ss_conf 39899999999719899987999758988234677502---------------------------------------352 Q gi|254780398|r 31 LDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTL---------------------------------------GAR 71 (284) Q Consensus 31 ~d~~i~~~iv~~~~~~~~~~VlEIGpG~G~LT~~Ll~~---------------------------------------~~~ 71 (284) +.++++.-|+..++..+++.+++==||.|++-.+.+-. ..- T Consensus 185 LrEtLAaalL~la~~~~~~~llDPmCGSGTilIEAAl~a~~~~pg~~R~f~f~~~~~~~~~~w~~~~~~a~~~~~~~~~~ 264 (393) T 3k0b_A 185 IKETMAAALVLLTSWHPDRPFYDPVCGSGTIPIEAALIGQNIAPGFNREFVSETWDWMPKQVWADARQEAEDLANYDQPL 264 (393) T ss_dssp CCHHHHHHHHHHSCCCTTSCEEETTCTTSHHHHHHHHHHTTCCTTTTSCCGGGGCTTSCHHHHHHHHHHHHHHCCTTCCC T ss_pred CCHHHHHHHHHHHCCCCCCCCCCCCCCCCHHHHHHHHHHCCCCCCCCCCHHHHHCCCCCHHHHHHHHHHHHHHHCCCCCC T ss_conf 75899999999737789983306789966799999999738788866243544224689999999999987543058876 Q ss_pred EEEEECCCCCCHHHHHHHHH--HHHCCCCCCHHHHCCCCHHHHCCCCCCEEEEECCCHHH Q ss_conf 59984255430368878753--22001220000000143155213322201120232246 Q gi|254780398|r 72 KVIVIEKDQQFFPILKDISS--QHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNI 129 (284) Q Consensus 72 ~v~aiEiD~~~~~~l~~~~~--~~~~~~~ii~~Dal~~d~~~~~~~~~~~~vvgNLPYnI 129 (284) ++++.|+|++.+..++.+.. ...+.+++.++|+.++..+ ..+-.||.|+||.. T Consensus 265 ~i~g~D~d~~ai~~a~~N~~~ag~~~~i~~~~~d~~~~~~~-----~~~~~iv~NPPYG~ 319 (393) T 3k0b_A 265 NIIGGDIDARLIEIAKQNAVEAGLGDLITFRQLQVADFQTE-----DEYGVVVANPPYGE 319 (393) T ss_dssp CEEEEESCHHHHHHHHHHHHHTTCTTCSEEEECCGGGCCCC-----CCSCEEEECCCCCC T ss_pred CEEEEECCHHHHHHHHHHHHHCCCCCHHHHHHCCHHHCCCC-----CCCCEEEECCCCHH T ss_conf 38999598999999999999738700000332019775999-----99978998898441 No 206 >2jjq_A Uncharacterized RNA methyltransferase pyrab10780; metal-binding, tRNA methyltransferase, S-adenosyl-L-methionine, iron, 4Fe-4S, iron-sulfur; HET: SAH; 1.8A {Pyrococcus abyssi} PDB: 2vs1_A* Probab=96.81 E-value=0.0032 Score=39.05 Aligned_cols=101 Identities=10% Similarity=0.089 Sum_probs=65.7 Q ss_pred CCHHHHHHHHHHC-CCCCCCEEEEECCCCCHHHHHHHHCCCCEEEEECCCCCCHHHHHHHHHHHH-CCCCCCHHHHCCCC Q ss_conf 3989999999971-989998799975898823467750235259984255430368878753220-01220000000143 Q gi|254780398|r 31 LDLNILKKIAESS-GSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQHP-NRLEIIQDDALKVD 108 (284) Q Consensus 31 ~d~~i~~~iv~~~-~~~~~~~VlEIGpG~G~LT~~Ll~~~~~~v~aiEiD~~~~~~l~~~~~~~~-~~~~ii~~Dal~~d 108 (284) ++....+.+++.+ +..+++.|+|.-+|.|.+|..|++. +.+|++||.++..++.+++....+. ++...+.+|... . T Consensus 273 ~N~~~~~~L~~~v~~~~~~~~vlDLycG~G~fsl~LA~~-~~~V~gvE~~~~av~~A~~na~~n~~~~~~~~~~~~~~-~ 350 (425) T 2jjq_A 273 TNSYQAVNLVRKVSELVEGEKILDMYSGVGTFGIYLAKR-GFNVKGFDSNEFAIEMARRNVEINNVDAEFEVASDREV-S 350 (425) T ss_dssp SBHHHHHHHHHHHHHHCCSSEEEEETCTTTHHHHHHHHT-TCEEEEEESCHHHHHHHHHHHHHHTCCEEEEECCTTTC-C T ss_pred HCHHHHHHHHHHHHCCCCCCEEEECCCCCCHHHHHHHHC-CCEEEEEECCHHHHHHHHHHHHHCCCCEEEEEHHHHHH-H T ss_conf 155767542122220368777876267866888998742-85545750468889999998987797079864011344-3 Q ss_pred HHHHCCCCCCEEEEECCCHH-HHHHHHHHHHH Q ss_conf 15521332220112023224-67889999985 Q gi|254780398|r 109 FEKFFNISSPIRIIANLPYN-IGTRLLFNWIS 139 (284) Q Consensus 109 ~~~~~~~~~~~~vvgNLPYn-Iss~Il~~ll~ 139 (284) +. ..-.||-+-|=. .+.+++..+.. T Consensus 351 ~~------~~D~vvlDPPR~G~~~~v~~~l~~ 376 (425) T 2jjq_A 351 VK------GFDTVIVDPPRAGLHPRLVKRLNR 376 (425) T ss_dssp CT------TCSEEEECCCTTCSCHHHHHHHHH T ss_pred HC------CCCEEEECCCCCCCCHHHHHHHHH T ss_conf 06------999999999873628999999986 No 207 >2b9e_A NOL1/NOP2/SUN domain family, member 5 isoform 2; methytransferase, structural genomics, structural genomics consortium, SGC; HET: SAM; 1.65A {Homo sapiens} SCOP: c.66.1.38 Probab=96.77 E-value=0.0033 Score=38.94 Aligned_cols=92 Identities=20% Similarity=0.155 Sum_probs=66.7 Q ss_pred HHHHCCCCCCCEEEEECCCCCHHHHHHHHCC--CCEEEEECCCCCCHHHHHHHHHHHH-CCCCCCHHHHCCCCHHHHCCC Q ss_conf 9997198999879997589882346775023--5259984255430368878753220-012200000001431552133 Q gi|254780398|r 39 IAESSGSLDGITVIEIGAGPGNLTQMLLTLG--ARKVIVIEKDQQFFPILKDISSQHP-NRLEIIQDDALKVDFEKFFNI 115 (284) Q Consensus 39 iv~~~~~~~~~~VlEIGpG~G~LT~~Ll~~~--~~~v~aiEiD~~~~~~l~~~~~~~~-~~~~ii~~Dal~~d~~~~~~~ 115 (284) .+..+++.+++.||+..+|+|.-|..|++.. -..|+|+|+++.-+..+++.+.... .+++++++|++.++...-. . T Consensus 94 ~~~~l~~~~g~~VLD~CAapGgKt~~la~l~~~~~~i~a~D~~~~Rl~~l~~~~~r~g~~~v~~~~~d~~~~~~~~~~-~ 172 (309) T 2b9e_A 94 PAMLLDPPPGSHVIDACAAPGNKTSHLAALLKNQGKIFAFDLDAKRLASMATLLARAGVSCCELAEEDFLAVSPSDPR-Y 172 (309) T ss_dssp HHHHHCCCTTCEEEESSCTTCHHHHHHHHHHTTCSEEEEEESCHHHHHHHHHHHHHTTCCSEEEEECCGGGSCTTCGG-G T ss_pred HHHHCCCCCCCEEEEECCCCCHHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHCCCCEEEEEECCHHHCCCCCCC-C T ss_conf 999739999994999678965799999987258966999808788899998767750873499970424444433444-5 Q ss_pred CCCEEEEECCCHHHHH Q ss_conf 2220112023224678 Q gi|254780398|r 116 SSPIRIIANLPYNIGT 131 (284) Q Consensus 116 ~~~~~vvgNLPYnIss 131 (284) ..--.|+-..|-.=+. T Consensus 173 ~~fd~IlvDaPCSg~G 188 (309) T 2b9e_A 173 HEVHYILLDPSCSGSG 188 (309) T ss_dssp TTEEEEEECCCCCC-- T ss_pred CCEEEEEECCCCCCCC T ss_conf 5113999328978887 No 208 >2oyr_A UPF0341 protein YHIQ; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; HET: SAH; 2.00A {Shigella flexneri 2A} SCOP: c.66.1.55 PDB: 2pgx_A 2pkw_A Probab=96.64 E-value=0.0014 Score=41.32 Aligned_cols=70 Identities=23% Similarity=0.364 Sum_probs=54.8 Q ss_pred HHHHHCCCCCC--CEEEEECCCCCHHHHHHHHCCCCEEEEECCCCCCHHHHHHHHHH----------HHCCCCCCHHHHC Q ss_conf 99997198999--87999758988234677502352599842554303688787532----------2001220000000 Q gi|254780398|r 38 KIAESSGSLDG--ITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQ----------HPNRLEIIQDDAL 105 (284) Q Consensus 38 ~iv~~~~~~~~--~~VlEIGpG~G~LT~~Ll~~~~~~v~aiEiD~~~~~~l~~~~~~----------~~~~~~ii~~Dal 105 (284) -+++.+++..+ ..||+.-+|.|.-+..++..++ +|+++|.++.++..|++.+.. ...+++++++|++ T Consensus 77 ~l~kAvGlk~~~~~~VlDaTaGlG~Da~vlA~~G~-~V~~iEr~p~l~~ll~d~l~ra~~~~~~~~~~~~ri~l~~~Ds~ 155 (258) T 2oyr_A 77 AVAKAVGIKGDYLPDVVDATAGLGRDAFVLASVGC-RVRMLERNPVVAALLDDGLARGYADAEIGGWLQERLQLIHASSL 155 (258) T ss_dssp HHHHHTTCBTTBCCCEEETTCTTCHHHHHHHHHTC-CEEEEECCHHHHHHHHHHHHHHHHCTTTHHHHHHHEEEEESCHH T ss_pred HHHHHHCCCCCCCCEEEECCCCCHHHHHHHHHCCC-EEEEEECCHHHHHHHHHHHHHHHHCCHHHHHHHHCCEEECCCHH T ss_conf 89999676578998489878774299999997799-68998479999999999999987273778998632378738799 Q ss_pred CCC Q ss_conf 143 Q gi|254780398|r 106 KVD 108 (284) Q Consensus 106 ~~d 108 (284) ++- T Consensus 156 ~~L 158 (258) T 2oyr_A 156 TAL 158 (258) T ss_dssp HHS T ss_pred HHH T ss_conf 998 No 209 >1zkd_A DUF185; X-RAY, NESG, RPR58, structural genomics, PSI, protein structure initiative, northeast structural genomics consortium; 2.10A {Rhodopseudomonas palustris CGA009} SCOP: c.66.1.52 Probab=96.47 E-value=0.0075 Score=36.69 Aligned_cols=71 Identities=17% Similarity=0.248 Sum_probs=48.3 Q ss_pred CCCCC--CCCCCHHHHHHHH-----------HHCCCCCCCEEEEECCCCCHHHHHHHHCC--------CCEEEEECCCCC Q ss_conf 36584--1123989999999-----------97198999879997589882346775023--------525998425543 Q gi|254780398|r 23 KYMGQ--NFLLDLNILKKIA-----------ESSGSLDGITVIEIGAGPGNLTQMLLTLG--------ARKVIVIEKDQQ 81 (284) Q Consensus 23 k~lGQ--nFL~d~~i~~~iv-----------~~~~~~~~~~VlEIGpG~G~LT~~Ll~~~--------~~~v~aiEiD~~ 81 (284) .+.|. .|.+.+.+-.-+- +..+....-.|+|+|||.|.|..-++..- .-.++.||..+. T Consensus 43 ~~iG~~GDF~TSpeis~~FG~~ia~~~~~~~~~~~~p~~~~ivE~GaG~G~L~~DIl~~~~~~p~~~~~~~~~~vE~s~~ 122 (387) T 1zkd_A 43 DPLGREGDFTTSPEISQMFGELLGLWSASVWKAADEPQTLRLIEIGPGRGTMMADALRALRVLPILYQSLSVHLVEINPV 122 (387) T ss_dssp --------CCSHHHHCHHHHHHHHHHHHHHHHHTTCCSSEEEEEECCTTSHHHHHHHHHHTTSHHHHTTEEEEEECCCHH T ss_pred CCCCCCCCEECCCHHHHHHHHHHHHHHHHHHHHCCCCCCCEEEEECCCCCHHHHHHHHHHHHCHHHHHCCEEEEEECCHH T ss_conf 98889987468740579999999999999999759997716999679820789989999864815441345899936878 Q ss_pred CHHHHHHHHHHH Q ss_conf 036887875322 Q gi|254780398|r 82 FFPILKDISSQH 93 (284) Q Consensus 82 ~~~~l~~~~~~~ 93 (284) +...-++.+... T Consensus 123 Lr~~Q~~~L~~~ 134 (387) T 1zkd_A 123 LRQKQQTLLAGI 134 (387) T ss_dssp HHHHHHHHSTTC T ss_pred HHHHHHHHHCCC T ss_conf 889999872477 No 210 >3lst_A CALO1 methyltransferase; calicheamicin, enediyne, SAH, structural genomics, PSI-2, protein structure initiative; HET: SAH; 2.40A {Micromonospora echinospora} Probab=96.46 E-value=0.0062 Score=37.24 Aligned_cols=83 Identities=16% Similarity=0.240 Sum_probs=50.2 Q ss_pred HHHCCCCCCCEEEEECCCCCHHHHHHHHCCCCEEEEECCCCCCHHHHHH--HHHHHHCCCCCCHHHHCCCCHHHHCCCCC Q ss_conf 9971989998799975898823467750235259984255430368878--75322001220000000143155213322 Q gi|254780398|r 40 AESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKD--ISSQHPNRLEIIQDDALKVDFEKFFNISS 117 (284) Q Consensus 40 v~~~~~~~~~~VlEIGpG~G~LT~~Ll~~~~~~v~aiEiD~~~~~~l~~--~~~~~~~~~~ii~~Dal~~d~~~~~~~~~ 117 (284) .+..+......||+||+|.|..+..++++.+. +.++-.|..-. ..+. ......++++++.+|+++- .+ +. T Consensus 177 ~~~~d~~~~~~vlDvGgG~G~~~~~l~~~~p~-~~~~~~D~~~~-~~~~~~~~~~~~~ri~~~~~d~~~~-~p-----~~ 248 (348) T 3lst_A 177 ARAGDFPATGTVADVGGGRGGFLLTVLREHPG-LQGVLLDRAEV-VARHRLDAPDVAGRWKVVEGDFLRE-VP-----HA 248 (348) T ss_dssp HHHSCCCSSEEEEEETCTTSHHHHHHHHHCTT-EEEEEEECHHH-HTTCCCCCGGGTTSEEEEECCTTTC-CC-----CC T ss_pred HHHCCCCCCCEEEECCCCCCHHHHHHHHHCCC-EEEEECCCHHH-HHHHHHHCCCCCCCEEEECCCCCCC-CC-----CC T ss_conf 88548887766997589986899998843898-38995361777-6666653346788368844763236-87-----75 Q ss_pred CEEEEECCCHHHH Q ss_conf 2011202322467 Q gi|254780398|r 118 PIRIIANLPYNIG 130 (284) Q Consensus 118 ~~~vvgNLPYnIs 130 (284) ...++.+.=++.+ T Consensus 249 D~v~~~~vlh~~~ 261 (348) T 3lst_A 249 DVHVLKRILHNWG 261 (348) T ss_dssp SEEEEESCGGGSC T ss_pred EEEEEECCHHCCC T ss_conf 0998751021399 No 211 >3ndi_A Methyltransferase; S-adenosylmethionine, kijanose, tetronitrose, tetradeoxysuga micromonospora chalcea, TCAB9, SUGA methylation; HET: SAM TMP; 1.50A {Micromonospora chalcea} PDB: 3ndj_A* Probab=96.26 E-value=0.01 Score=35.93 Aligned_cols=56 Identities=11% Similarity=0.154 Sum_probs=43.2 Q ss_pred HHHHHHHHHHCCCCCCCEEEEECCCCCHHHHHHHHCCCCEEEEECCCCCCHHHHHHH Q ss_conf 899999999719899987999758988234677502352599842554303688787 Q gi|254780398|r 33 LNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDI 89 (284) Q Consensus 33 ~~i~~~iv~~~~~~~~~~VlEIGpG~G~LT~~Ll~~~~~~v~aiEiD~~~~~~l~~~ 89 (284) +..++.+.+.....++..|||||+|.|.+-..+-+++. .++.+|.....++..++. T Consensus 93 ~~~~~~l~~~~~~~~~~~ileIG~~dG~lL~~~~~~~~-~~~Gidps~~~~~~~~~~ 148 (416) T 3ndi_A 93 AMLARDFLATELTGPDPFIVEIGCNDGIMLRTIQEAGV-RHLGFEPSSGVAAKAREK 148 (416) T ss_dssp HHHHHHHHHTTTCSSSCEEEEETCTTTTTHHHHHHTTC-EEEEECSCHHHHHHHHHT T ss_pred HHHHHHHHHHHCCCCCCEEEEECCCCCHHHHHHHHCCC-CEEEECCCCCHHHHHCCC T ss_conf 99999999874347787799835888705443342035-324422562034443035 No 212 >1jsx_A Glucose-inhibited division protein B; methyltransferase fold, structural genomics, PSI, protein structure initiative; 2.40A {Escherichia coli} SCOP: c.66.1.20 Probab=96.07 E-value=0.011 Score=35.75 Aligned_cols=78 Identities=19% Similarity=0.276 Sum_probs=56.8 Q ss_pred CCHHHHHHHHHHCCCCCCCEEEEECCCCCHHHHHHHHCCCC-EEEEECCCCCCHHHHHHHHHHHH-CCCCCCHHHHCCCC Q ss_conf 39899999999719899987999758988234677502352-59984255430368878753220-01220000000143 Q gi|254780398|r 31 LDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGAR-KVIVIEKDQQFFPILKDISSQHP-NRLEIIQDDALKVD 108 (284) Q Consensus 31 ~d~~i~~~iv~~~~~~~~~~VlEIGpG~G~LT~~Ll~~~~~-~v~aiEiD~~~~~~l~~~~~~~~-~~~~ii~~Dal~~d 108 (284) .++.++|-++-. ...++..+++||+|.|.-...|+-..|. +++++|...+=+..|++...... ++++++++++-++. T Consensus 50 ~~~Hi~DSl~~~-~~~~~~~ilDiGsGaG~PGi~laI~~p~~~~~Lve~~~Kk~~fL~~~~~~L~L~nv~v~~~R~e~~~ 128 (207) T 1jsx_A 50 LVRHILDSIVVA-PYLQGERFIDVGTGPGLPGIPLSIVRPEAHFTLLDSLGKRVRFLRQVQHELKLENIEPVQSRVEEFP 128 (207) T ss_dssp HHHHHHHHHHHG-GGCCSSEEEEETCTTTTTHHHHHHHCTTSEEEEEESCHHHHHHHHHHHHHTTCSSEEEEECCTTTSC T ss_pred HHHHHHHHHHHH-HHHCCCEEEECCCCCCCHHHHHHHHCCCCEEEEEECHHHHHHHHHHHHHHCCCCCCEEEEEHHHHCC T ss_conf 999999999887-6423887986169986154789874885089997065889999999999739987304521345314 Q ss_pred H Q ss_conf 1 Q gi|254780398|r 109 F 109 (284) Q Consensus 109 ~ 109 (284) . T Consensus 129 ~ 129 (207) T 1jsx_A 129 S 129 (207) T ss_dssp C T ss_pred C T ss_conf 4 No 213 >3g89_A Ribosomal RNA small subunit methyltransferase G; 16S rRNA methyltransferase, translation, cytoplasm, rRNA processing; HET: HIC SAM AMP; 1.50A {Thermus thermophilus} PDB: 3g88_A* 3g8a_A* 3g8b_A* Probab=95.99 E-value=0.0055 Score=37.55 Aligned_cols=66 Identities=11% Similarity=0.146 Sum_probs=50.9 Q ss_pred CCCCCEEEEECCCCCHHHHHHHHCCCC-EEEEECCCCCCHHHHHHHHHHHH-CCCCCCHHHHCCCCHH Q ss_conf 899987999758988234677502352-59984255430368878753220-0122000000014315 Q gi|254780398|r 45 SLDGITVIEIGAGPGNLTQMLLTLGAR-KVIVIEKDQQFFPILKDISSQHP-NRLEIIQDDALKVDFE 110 (284) Q Consensus 45 ~~~~~~VlEIGpG~G~LT~~Ll~~~~~-~v~aiEiD~~~~~~l~~~~~~~~-~~~~ii~~Dal~~d~~ 110 (284) ...+..|++||+|.|.--..|+-..+. +++.||.+.+=+..|++...... ++++++++++-++... T Consensus 78 ~~~~~~vlDiGSGaG~PGipLAI~~p~~~v~LvEs~~KK~~FL~~v~~~LgL~Nv~vi~~R~E~~~~~ 145 (249) T 3g89_A 78 WQGPLRVLDLGTGAGFPGLPLKIVRPELELVLVDATRKKVAFVERAIEVLGLKGARALWGRAEVLARE 145 (249) T ss_dssp CCSSCEEEEETCTTTTTHHHHHHHCTTCEEEEEESCHHHHHHHHHHHHHHTCSSEEEEECCHHHHTTS T ss_pred CCCCCEEEECCCCCCCCEEEEEEECCCCEEEEECCCHHHHHHHHHHHHHCCCCCCEEEEEEEEEECCC T ss_conf 77897898426999964057878369832999808278999999999982999845887787870433 No 214 >3giw_A Protein of unknown function DUF574; rossmann-fold protein, structural genomics, joint center for structural genomics, JCSG; HET: MSE UNL; 1.45A {Streptomyces avermitilis ma-4680} PDB: 3go4_A* Probab=95.85 E-value=0.018 Score=34.28 Aligned_cols=114 Identities=12% Similarity=0.277 Sum_probs=71.0 Q ss_pred CCCCCCHHHHHHHHHHCC---------------------CCCC-CEEEEECCCCC--HHHHHHHHC-CCC-EEEEECCCC Q ss_conf 411239899999999719---------------------8999-87999758988--234677502-352-599842554 Q gi|254780398|r 27 QNFLLDLNILKKIAESSG---------------------SLDG-ITVIEIGAGPG--NLTQMLLTL-GAR-KVIVIEKDQ 80 (284) Q Consensus 27 QnFL~d~~i~~~iv~~~~---------------------~~~~-~~VlEIGpG~G--~LT~~Ll~~-~~~-~v~aiEiD~ 80 (284) .||-+|....+++.+... ...| +-+|+||+|.+ .-+..++++ .+. +|+.++.|+ T Consensus 36 dn~~~DR~~a~~~~~~~P~~~~~a~~nR~fl~RaVr~la~e~GirQfLDlGsGlPt~~n~heva~~~~P~arVvyvD~dp 115 (277) T 3giw_A 36 DYYPADKEAGDAMSREWPALPVHMRANRDWMNRAVAHLAKEAGIRQFLDIGTGIPTSPNLHEIAQSVAPESRVVYVDNDP 115 (277) T ss_dssp CCCHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHHHHHHHTSCCCEEEEESCCSCCSSCHHHHHHHHCTTCEEEEEECCH T ss_pred CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEECCCCCCCCCHHHHHHHHCCCCEEEEEECCH T ss_conf 57788899999999878567999999799999999999985798789994638898874999998748997699994978 Q ss_pred CCHHHHHHHHHHHH-CCCCCCHHHHCCCC-------HHHHCCCCCCEEE--EECCCHHHH----HHHHHHHHHH Q ss_conf 30368878753220-01220000000143-------1552133222011--202322467----8899999852 Q gi|254780398|r 81 QFFPILKDISSQHP-NRLEIIQDDALKVD-------FEKFFNISSPIRI--IANLPYNIG----TRLLFNWISA 140 (284) Q Consensus 81 ~~~~~l~~~~~~~~-~~~~ii~~Dal~~d-------~~~~~~~~~~~~v--vgNLPYnIs----s~Il~~ll~~ 140 (284) ..+.+.+.++...+ .+.+++.+|+.+-+ ....++...|..| +|-|.|--- ..++.++... T Consensus 116 ~vlaharalL~~~~~~~~~~v~aD~rdp~~il~~~~~~~~lD~~rPVavl~~~vlh~l~D~d~p~~lv~~l~~~ 189 (277) T 3giw_A 116 IVLTLSQGLLASTPEGRTAYVEADMLDPASILDAPELRDTLDLTRPVALTVIAIVHFVLDEDDAVGIVRRLLEP 189 (277) T ss_dssp HHHHTTHHHHCCCSSSEEEEEECCTTCHHHHHTCHHHHTTCCTTSCCEEEEESCGGGSCGGGCHHHHHHHHHTT T ss_pred HHHHHHHHHHCCCCCCCEEEEECCCCCCHHHHCCHHHHCCCCCCCCEEEEEEEEECCCCCHHHHHHHHHHHHHH T ss_conf 89999999733798773899957666834543155664337867863466665312678423499999999972 No 215 >1ixk_A Methyltransferase; open beta sheet; 1.90A {Pyrococcus horikoshii} SCOP: c.66.1.38 Probab=95.62 E-value=0.046 Score=31.79 Aligned_cols=83 Identities=14% Similarity=0.139 Sum_probs=62.6 Q ss_pred CCCCCCCHHHHHHHHHHCCCCCCCEEEEECCCCCHHHHHHHHCCC--CEEEEECCCCCCHHHHHHHHHHHH-CCCCCCHH Q ss_conf 841123989999999971989998799975898823467750235--259984255430368878753220-01220000 Q gi|254780398|r 26 GQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGA--RKVIVIEKDQQFFPILKDISSQHP-NRLEIIQD 102 (284) Q Consensus 26 GQnFL~d~~i~~~iv~~~~~~~~~~VlEIGpG~G~LT~~Ll~~~~--~~v~aiEiD~~~~~~l~~~~~~~~-~~~~ii~~ 102 (284) |.=++.|.. .--.+..+++.+++.||+..+|+|.=|..|++... ..|+|.|++..=+..++....... .++.+++. T Consensus 98 G~~~vQD~a-S~l~~~~L~~~~g~~vLD~CAaPGgKt~~l~~~~~~~g~i~a~d~~~~R~~~l~~~l~r~g~~~i~~~~~ 176 (315) T 1ixk_A 98 GLIYIQEAS-SMYPPVALDPKPGEIVADMAAAPGGKTSYLAQLMRNDGVIYAFDVDENRLRETRLNLSRLGVLNVILFHS 176 (315) T ss_dssp TSEEECCHH-HHHHHHHHCCCTTCEEEECCSSCSHHHHHHHHHTTTCSEEEEECSCHHHHHHHHHHHHHHTCCSEEEESS T ss_pred CCEEEECCH-HHHHHHHCCCCCCCEEEECCCCCHHHHHHHHHHCCCCCEEEEECCCHHHHHHHHHHHHHCCCCCCCEECC T ss_conf 868993621-2147661589999928895777114466533312688447841078899999999998718765211124 Q ss_pred HHCCCCH Q ss_conf 0001431 Q gi|254780398|r 103 DALKVDF 109 (284) Q Consensus 103 Dal~~d~ 109 (284) |++..+. T Consensus 177 d~~~~~~ 183 (315) T 1ixk_A 177 SSLHIGE 183 (315) T ss_dssp CGGGGGG T ss_pred CCHHCCC T ss_conf 3000012 No 216 >2zfu_A Nucleomethylin, cerebral protein 1; nucleolar protein, SAM-binding protein, protein structure, nucleus, phosphoprotein, nuclear protein; HET: SAH; 2.00A {Homo sapiens} Probab=95.54 E-value=0.014 Score=35.08 Aligned_cols=65 Identities=17% Similarity=0.173 Sum_probs=43.3 Q ss_pred CCCCCCCCCCHHHHHHHHHHCC-CCCCCEEEEECCCCCHHHHHHHHCCCCEEEEECCCCCCHHHHHHHHHHHHCCCCCCH Q ss_conf 3658411239899999999719-899987999758988234677502352599842554303688787532200122000 Q gi|254780398|r 23 KYMGQNFLLDLNILKKIAESSG-SLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQ 101 (284) Q Consensus 23 k~lGQnFL~d~~i~~~iv~~~~-~~~~~~VlEIGpG~G~LT~~Ll~~~~~~v~aiEiD~~~~~~l~~~~~~~~~~~~ii~ 101 (284) ++|.++. ++++++.+. ..++..|+++|||+|.++..+.. ++.+++.-. .+..++. T Consensus 48 ~~wp~~p------v~~ii~~l~~~~~~~~IlDiGCG~G~~~~~l~~----~v~~~D~~~--------------~~~~~~~ 103 (215) T 2zfu_A 48 KKWPLQP------VDRIARDLRQRPASLVVADFGCGDCRLASSIRN----PVHCFDLAS--------------LDPRVTV 103 (215) T ss_dssp TTSSSCH------HHHHHHHHHTSCTTSCEEEETCTTCHHHHHCCS----CEEEEESSC--------------SSTTEEE T ss_pred HHCHHHH------HHHHHHHHHHCCCCCEEEEECCCCCHHHHHHCC----EEEEEECCC--------------CCCCEEE T ss_conf 8770508------999999875066888799832783399986302----267730236--------------8860577 Q ss_pred HHHCCCCHHH Q ss_conf 0000143155 Q gi|254780398|r 102 DDALKVDFEK 111 (284) Q Consensus 102 ~Dal~~d~~~ 111 (284) +|+.+.++++ T Consensus 104 ~d~~~lp~~d 113 (215) T 2zfu_A 104 CDMAQVPLED 113 (215) T ss_dssp SCTTSCSCCT T ss_pred CCCCCCCCCC T ss_conf 2432488889 No 217 >1wg8_A Predicted S-adenosylmethionine-dependent methyltransferase; S-adenosyl-methyltransferase, MRAW; HET: SAM; 2.00A {Thermus thermophilus} SCOP: a.60.13.1 c.66.1.23 Probab=95.30 E-value=0.017 Score=34.50 Aligned_cols=76 Identities=13% Similarity=0.166 Sum_probs=61.9 Q ss_pred CCCCHHHHHHHHHHCCCCCCCEEEEECCCCCHHHHHHHHCCCCEEEEECCCCCCHHHHHHHHHHHHCCCCCCHHHHCCCC Q ss_conf 12398999999997198999879997589882346775023525998425543036887875322001220000000143 Q gi|254780398|r 29 FLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVD 108 (284) Q Consensus 29 FL~d~~i~~~iv~~~~~~~~~~VlEIGpG~G~LT~~Ll~~~~~~v~aiEiD~~~~~~l~~~~~~~~~~~~ii~~Dal~~d 108 (284) |-.-+..++.+++.+.+.++..+++.--|.|.=|.+||++++ +|+|++.|+.....+++.+. .++.++++.+-.++ T Consensus 4 ~~H~PVLl~Evl~~L~~~~~g~~iD~T~G~GGHS~~iL~~~~-~liaiDrD~~Ai~~a~~~~~---~~~~~~~~~f~~~~ 79 (285) T 1wg8_A 4 MTHVPVLYQEALDLLAVRPGGVYVDATLGGAGHARGILERGG-RVIGLDQDPEAVARAKGLHL---PGLTVVQGNFRHLK 79 (285) T ss_dssp CCCCCTTHHHHHHHHTCCTTCEEEETTCTTSHHHHHHHHTTC-EEEEEESCHHHHHHHHHTCC---TTEEEEESCGGGHH T ss_pred CCCCCCCHHHHHHHCCCCCCCEEEEECCCCCHHHHHHHHCCC-EEEEEECCHHHHHHHHHCCC---CCCEEEEEEHHHHH T ss_conf 986762199999727858999999948898299999995799-38999898899998664044---43168863001217 No 218 >3ajd_A Putative methyltransferase MJ0026; tRNA, M5C, rossmann fold, structural genomics, riken structu genomics/proteomics initiative; 1.27A {Methanocaldococcus jannaschii} PDB: 3a4t_A Probab=95.26 E-value=0.035 Score=32.54 Aligned_cols=103 Identities=17% Similarity=0.084 Sum_probs=69.3 Q ss_pred CCCCCCCHHHHHHHHHHCCCCCCCEEEEECCCCCHHHHHHHHCC--CCEEEEECCCCCCHHHHHHHHHHHH-CCCCCCHH Q ss_conf 84112398999999997198999879997589882346775023--5259984255430368878753220-01220000 Q gi|254780398|r 26 GQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLG--ARKVIVIEKDQQFFPILKDISSQHP-NRLEIIQD 102 (284) Q Consensus 26 GQnFL~d~~i~~~iv~~~~~~~~~~VlEIGpG~G~LT~~Ll~~~--~~~v~aiEiD~~~~~~l~~~~~~~~-~~~~ii~~ 102 (284) |+=++.|..-. -.+..+++.+++.||+..+|+|.=|..|+... -..++|+|++..-...+++...... .++.+++. T Consensus 63 G~~~iQD~sS~-l~~~~l~~~~g~~vLD~CaapGgKt~~i~~~~~~~~~i~a~d~~~~rl~~l~~~~~r~g~~~~~~~~~ 141 (274) T 3ajd_A 63 GYYMPQSISSM-IPPIVLNPREDDFILDMCAAPGGKTTHLAQLMKNKGTIVAVEISKTRTKALKSNINRMGVLNTIIINA 141 (274) T ss_dssp TSEEECCSGGG-HHHHHHCCCTTCEEEETTCTTCHHHHHHHHHTTTCSEEEEEESCHHHHHHHHHHHHHTTCCSEEEEES T ss_pred CEEEEECHHHH-CHHHHCCCCCCCEEEEECCCCCHHHHHHHHHHHCCCCEEEECCCHHHHHHHHHHHHHHHCCCCCEECC T ss_conf 80999455651-58975899999979990788868899999985386833873277889999988787651144100224 Q ss_pred HHCCCCHHHHCCCCCCEEEEECCCHHH Q ss_conf 000143155213322201120232246 Q gi|254780398|r 103 DALKVDFEKFFNISSPIRIIANLPYNI 129 (284) Q Consensus 103 Dal~~d~~~~~~~~~~~~vvgNLPYnI 129 (284) |+.+++-.........-+|+--.|=.- T Consensus 142 d~~~~~~~~~~~~~~fD~ILlDaPCSg 168 (274) T 3ajd_A 142 DMRKYKDYLLKNEIFFDKILLDAPCSG 168 (274) T ss_dssp CHHHHHHHHHHTTCCEEEEEEEECCC- T ss_pred CHHHHHHHHCCCCCCCCEEEECCCCCC T ss_conf 376766653145445767996388766 No 219 >3htx_A HEN1; HEN1, small RNA methyltransferase, protein-RNA complex; HET: SAH; 3.10A {Arabidopsis thaliana} Probab=95.21 E-value=0.027 Score=33.20 Aligned_cols=89 Identities=13% Similarity=0.204 Sum_probs=57.2 Q ss_pred CCCCCCCCCCCCH---HHHHHHHHHCCCCCCCEEEEECCCCCHHHHHHHHC--CCCEEEEECCCCCCHHHHHHHHHHH-- Q ss_conf 4336584112398---99999999719899987999758988234677502--3525998425543036887875322-- Q gi|254780398|r 21 PKKYMGQNFLLDL---NILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTL--GARKVIVIEKDQQFFPILKDISSQH-- 93 (284) Q Consensus 21 p~k~lGQnFL~d~---~i~~~iv~~~~~~~~~~VlEIGpG~G~LT~~Ll~~--~~~~v~aiEiD~~~~~~l~~~~~~~-- 93 (284) |..+..|-|..=+ .=...+++.+.-.....|+++|||.|.|-..|++. .-..++.|+||.+..+...+.+... T Consensus 692 ~EermE~~~F~PPL~~QR~~aVl~iLr~~~akkVlDLGCGEGkLL~~LL~~~~~iE~IvGVDIS~~~Le~A~~rL~~dl~ 771 (950) T 3htx_A 692 SEERMEAAFFKPPLSKQRVEYALKHIRESSASTLVDFGCGSGSLLDSLLDYPTSLQTIIGVDISPKGLARAAKMLHVKLN 771 (950) T ss_dssp CCCCCCCCCSSSCHHHHHHHHHHHHHHHSCCSEEEEETCSSSHHHHHHTSSCCCCCEEEEEESCHHHHHHHHHHHHHHTT T ss_pred HHHHHCCCCCCCCHHHHHHHHHHHHHHHCCCCEEEECCCCCCHHHHHHHCCCCCEEEEEEEECCHHHHHHHHHHCCCCCC T ss_conf 48773046779977999999999999875998899738887099999862876600799997799999999874484113 Q ss_pred -----HCCCCCCHHHHCCCCH Q ss_conf -----0012200000001431 Q gi|254780398|r 94 -----PNRLEIIQDDALKVDF 109 (284) Q Consensus 94 -----~~~~~ii~~Dal~~d~ 109 (284) +..+++.+|++...|- T Consensus 772 ~~r~r~~~V~LyqGSIt~~D~ 792 (950) T 3htx_A 772 KEACNVKSATLYDGSILEFDS 792 (950) T ss_dssp TTCSSCSEEEEEESCTTSCCT T ss_pred CCCCCCCEEEEEECCCCCCCC T ss_conf 544576568999446555243 No 220 >1g55_A DNA cytosine methyltransferase DNMT2; human DNA methyltransferase homologue; HET: DNA SAH; 1.80A {Homo sapiens} SCOP: c.66.1.26 Probab=95.16 E-value=0.033 Score=32.69 Aligned_cols=74 Identities=18% Similarity=0.220 Sum_probs=53.4 Q ss_pred CEEEEECCCCCHHHHHHHHCCC--CEEEEECCCCCCHHHHHHHHHHHHCCCCCCHHHHCCCCHHHHCCCCCCEEEEECCC Q ss_conf 8799975898823467750235--25998425543036887875322001220000000143155213322201120232 Q gi|254780398|r 49 ITVIEIGAGPGNLTQMLLTLGA--RKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLP 126 (284) Q Consensus 49 ~~VlEIGpG~G~LT~~Ll~~~~--~~v~aiEiD~~~~~~l~~~~~~~~~~~~ii~~Dal~~d~~~~~~~~~~~~vvgNLP 126 (284) -.|+|.=+|.|.++..|-+.+- +-|.|+|+|+..++.++..+.+ ..++++|+-+++..++..... -.++|-.| T Consensus 3 lkvidLFsG~GG~~~gl~~aG~~~~~v~a~e~d~~a~~ty~~N~~~----~~~~~~di~~~~~~~~~~~~~-Dll~ggpP 77 (343) T 1g55_A 3 LRVLELYSGVGGMHHALRESCIPAQVVAAIDVNTVANEVYKYNFPH----TQLLAKTIEGITLEEFDRLSF-DMILMSPP 77 (343) T ss_dssp EEEEEETCTTCHHHHHHHHHTCSEEEEEEECCCHHHHHHHHHHCTT----SCEECSCGGGCCHHHHHHHCC-SEEEECCC T ss_pred CEEEEECCCHHHHHHHHHHCCCCCEEEEEEECCHHHHHHHHHHCCC----CCEEECCHHHCCHHHCCCCCC-CEEEEECC T ss_conf 7799918276489999997499986999998999999999997899----975407533498957587786-77997289 Q ss_pred H Q ss_conf 2 Q gi|254780398|r 127 Y 127 (284) Q Consensus 127 Y 127 (284) = T Consensus 78 C 78 (343) T 1g55_A 78 C 78 (343) T ss_dssp - T ss_pred C T ss_conf 9 No 221 >2yxl_A PH0851 protein, 450AA long hypothetical FMU protein; FMU-homolog, methyltransferase, structural genomics, NPPSFA; HET: SFG; 2.55A {Pyrococcus horikoshii OT3} Probab=95.04 E-value=0.065 Score=30.87 Aligned_cols=78 Identities=22% Similarity=0.241 Sum_probs=59.3 Q ss_pred CCCHHHHHHHHHHCCCCCCCEEEEECCCCCHHHHHHHHC--CCCEEEEECCCCCCHHHHHHHHHHHH-CCCCCCHHHHCC Q ss_conf 239899999999719899987999758988234677502--35259984255430368878753220-012200000001 Q gi|254780398|r 30 LLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTL--GARKVIVIEKDQQFFPILKDISSQHP-NRLEIIQDDALK 106 (284) Q Consensus 30 L~d~~i~~~iv~~~~~~~~~~VlEIGpG~G~LT~~Ll~~--~~~~v~aiEiD~~~~~~l~~~~~~~~-~~~~ii~~Dal~ 106 (284) +.|.. .--.+..+++.+++.||+..+|+|.=|..|++. +...++|+|+++.=...+++...... .++.+...|+.. T Consensus 243 vQD~a-S~l~~~~L~~~~g~~VLD~CAaPGGKT~~la~~~~~~~~i~a~d~~~~rl~~l~~~l~r~g~~~v~~~~~d~~~ 321 (450) T 2yxl_A 243 VQEEA-SAVASIVLDPKPGETVVDLAAAPGGKTTHLAELMKNKGKIYAFDVDKMRMKRLKDFVKRMGIKIVKPLVKDARK 321 (450) T ss_dssp ECCHH-HHHHHHHHCCCTTCEEEESSCTTCHHHHHHHHHTTTCSEEEEECSCHHHHHHHHHHHHHTTCCSEEEECSCTTC T ss_pred EECCC-HHHHHHHHCCCCCCEEEEECCCCCHHHHHHHHHHHHCCCEEECCCCHHHHHHHHHHHHHHCCCCEEEEECCCHH T ss_conf 96432-06689873457898587506886579999999865138503112548778778999997087631676133010 Q ss_pred CC Q ss_conf 43 Q gi|254780398|r 107 VD 108 (284) Q Consensus 107 ~d 108 (284) .+ T Consensus 322 ~~ 323 (450) T 2yxl_A 322 AP 323 (450) T ss_dssp CS T ss_pred CC T ss_conf 64 No 222 >3cvo_A Methyltransferase-like protein of unknown function; YP_167254.1, structural genomics, joint center for structural genomics, JCSG; HET: MSE PG4; 1.80A {Silicibacter pomeroyi dss-3} Probab=94.98 E-value=0.04 Score=32.22 Aligned_cols=60 Identities=15% Similarity=0.231 Sum_probs=43.8 Q ss_pred CCCHHHHHHHHHHCCCCCCCEEEEECCCCCHHHHHHHHCCCCEEEEECCCCCCHHHHHHHHHHH Q ss_conf 2398999999997198999879997589882346775023525998425543036887875322 Q gi|254780398|r 30 LLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQH 93 (284) Q Consensus 30 L~d~~i~~~iv~~~~~~~~~~VlEIGpG~G~LT~~Ll~~~~~~v~aiEiD~~~~~~l~~~~~~~ 93 (284) ..++.-.+-+.+.+. +++.|||.|+|. =|...++...++|++||-|+.+++.+++..... T Consensus 15 t~~~~e~~~l~~~l~--~~~~iLE~GSGg--ST~~~a~~~~~~I~SVE~d~~W~~~v~~~l~~~ 74 (202) T 3cvo_A 15 TMPPAEAEALRMAYE--EAEVILEYGSGG--STVVAAELPGKHVTSVESDRAWARMMKAWLAAN 74 (202) T ss_dssp CSCHHHHHHHHHHHH--HCSEEEEESCSH--HHHHHHTSTTCEEEEEESCHHHHHHHHHHHHHS T ss_pred CCCHHHHHHHHHHHC--CCCEEEEECCCH--HHHHHHHCCCCEEEEECCCHHHHHHHHHHHHHC T ss_conf 899889999999825--799999968989--899999817980899679999999999986541 No 223 >2frx_A Hypothetical protein YEBU; rossmann-type S-adenosylmethionine-dependent methyltransferase domain; 2.90A {Escherichia coli} Probab=94.95 E-value=0.078 Score=30.39 Aligned_cols=82 Identities=12% Similarity=0.138 Sum_probs=59.7 Q ss_pred CCCCCCCHHHHHHHHHH--CCCCCCCEEEEECCCCCHHHHHHHHCCC--CEEEEECCCCCCHHHHHHHHHHHH-CCCCCC Q ss_conf 84112398999999997--1989998799975898823467750235--259984255430368878753220-012200 Q gi|254780398|r 26 GQNFLLDLNILKKIAES--SGSLDGITVIEIGAGPGNLTQMLLTLGA--RKVIVIEKDQQFFPILKDISSQHP-NRLEII 100 (284) Q Consensus 26 GQnFL~d~~i~~~iv~~--~~~~~~~~VlEIGpG~G~LT~~Ll~~~~--~~v~aiEiD~~~~~~l~~~~~~~~-~~~~ii 100 (284) |.=++.|++-.- .+.. +++.+++.||+..+|+|.=|..|+.... ..|+|.|++..=+..|++...... .++.+. T Consensus 95 G~~yvQD~sS~l-~~~~L~~~~~~g~~VLDlCAAPGgKT~~la~~~~~~g~lvAnD~~~~R~~~L~~nl~r~g~~nv~~~ 173 (479) T 2frx_A 95 GLFYIQEASSML-PVAALFADGNAPQRVMDVAAAPGSKTTQISARMNNEGAILANEFSASRVKVLHANISRCGISNVALT 173 (479) T ss_dssp TSEEECCHHHHH-HHHHHTTTTCCCSEEEESSCTTSHHHHHHHHHTTTCSEEEEECSSHHHHHHHHHHHHHHTCCSEEEE T ss_pred CEEEEECHHHHH-HHHHHHHCCCCCCEEEEECCCCCHHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHCCCCCEEEE T ss_conf 369998889978-9999752789998699947886589999998624682599653657778899998986389718999 Q ss_pred HHHHCCCC Q ss_conf 00000143 Q gi|254780398|r 101 QDDALKVD 108 (284) Q Consensus 101 ~~Dal~~d 108 (284) +.|+..++ T Consensus 174 ~~d~~~~~ 181 (479) T 2frx_A 174 HFDGRVFG 181 (479) T ss_dssp CCCSTTHH T ss_pred ECCCHHCC T ss_conf 35400114 No 224 >1sqg_A SUN protein, FMU protein; rossmann-fold, mixed beta sheet, methyltransferase-fold, RNA-binding domain; 1.65A {Escherichia coli} SCOP: a.79.1.3 c.66.1.38 PDB: 1sqf_A Probab=94.78 E-value=0.078 Score=30.39 Aligned_cols=79 Identities=16% Similarity=0.190 Sum_probs=56.6 Q ss_pred CCCCCCCHHHHHHHHHHCCCCCCCEEEEECCCCCHHHHHHHHCCC-CEEEEECCCCCCHHHHHHHHHHHH-CCCCCCHHH Q ss_conf 841123989999999971989998799975898823467750235-259984255430368878753220-012200000 Q gi|254780398|r 26 GQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGA-RKVIVIEKDQQFFPILKDISSQHP-NRLEIIQDD 103 (284) Q Consensus 26 GQnFL~d~~i~~~iv~~~~~~~~~~VlEIGpG~G~LT~~Ll~~~~-~~v~aiEiD~~~~~~l~~~~~~~~-~~~~ii~~D 103 (284) |.=.+.|..-. -.+..+++.+++.||+..+|+|.=|..|+.... ..++|+|++..=...+++...... ++..+...| T Consensus 226 G~~~vQD~aSq-l~~~~l~~~~~~~VLD~CAaPGgKt~~la~~~~~~~i~a~d~~~~r~~~l~~~~~r~g~~~~~~~~~~ 304 (429) T 1sqg_A 226 GWVTVQDASAQ-GCMTWLAPQNGEHILDLCAAPGGKTTHILEVAPEAQVVAVDIDEQRLSRVYDNLKRLGMKATVKQGDG 304 (429) T ss_dssp TSEEECCHHHH-THHHHHCCCTTCEEEEESCTTCHHHHHHHHHCTTCEEEEEESSTTTHHHHHHHHHHTTCCCEEEECCT T ss_pred CEEEECCHHHH-HHHHHCCCCCCCEEEEECCCCHHHHHHHHHHCCCCCCEEECCHHHHHHHHHHHHHHCCCCCEEECCCC T ss_conf 74773514545-67762184214414560688048999999862224656223426778888777864164311102344 Q ss_pred HC Q ss_conf 00 Q gi|254780398|r 104 AL 105 (284) Q Consensus 104 al 105 (284) +. T Consensus 305 ~~ 306 (429) T 1sqg_A 305 RY 306 (429) T ss_dssp TC T ss_pred CC T ss_conf 33 No 225 >2qrv_A DNA (cytosine-5)-methyltransferase 3A; DNA methyltransferase 3A (DNMT3A) and ITS regulatory factor; HET: DNA SAH; 2.89A {Homo sapiens} Probab=94.68 E-value=0.085 Score=30.17 Aligned_cols=78 Identities=17% Similarity=0.086 Sum_probs=52.6 Q ss_pred CCCEEEEECCCCCHHHHHHHHCCCC--EEEEECCCCCCHHHHHHHHHHHHCCCCCCHHHHCCCCHHHHCCCCCCEEEEEC Q ss_conf 9987999758988234677502352--59984255430368878753220012200000001431552133222011202 Q gi|254780398|r 47 DGITVIEIGAGPGNLTQMLLTLGAR--KVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIAN 124 (284) Q Consensus 47 ~~~~VlEIGpG~G~LT~~Ll~~~~~--~v~aiEiD~~~~~~l~~~~~~~~~~~~ii~~Dal~~d~~~~~~~~~~~~vvgN 124 (284) +.-.|+|.=+|.|.++..+-+.|.. .|.|+|+|+..++.++.++.. -.++.+|+-+++.......+..-.++|- T Consensus 15 ~~lkvl~LFsG~GG~~~gl~~aG~~~~~v~a~e~~~~a~~~y~~n~~~----~~~~~~Di~~~~~~~~~~~~~~Dil~gg 90 (295) T 2qrv_A 15 KPIRVLSLFDGIATGLLVLKDLGIQVDRYIASEVCEDSITVGMVRHQG----KIMYVGDVRSVTQKHIQEWGPFDLVIGG 90 (295) T ss_dssp CCEEEEEETCTTTHHHHHHHHTTBCEEEEEEECCCHHHHHHHHHHTTT----CEEEECCGGGCCHHHHHHTCCCSEEEEC T ss_pred CCCEEEEECCCCCHHHHHHHHCCCCEEEEEEEECCHHHHHHHHHHCCC----CCCCCCCEEEEEECCCCCCCCCEEEECC T ss_conf 997599979574479999998599847999997899999999987899----9770366015740244567767399726 Q ss_pred CCHH Q ss_conf 3224 Q gi|254780398|r 125 LPYN 128 (284) Q Consensus 125 LPYn 128 (284) .|-+ T Consensus 91 pPCQ 94 (295) T 2qrv_A 91 SPCN 94 (295) T ss_dssp CCCG T ss_pred CCCC T ss_conf 8887 No 226 >1dct_A Protein (modification methylase HAEIII); enzyme, cytosine methylase, transferase/DNA complex; HET: DNA C49 5CM; 2.80A {Haemophilus influenzae biotypeaegyptius} SCOP: c.66.1.26 Probab=94.64 E-value=0.053 Score=31.42 Aligned_cols=59 Identities=22% Similarity=0.329 Sum_probs=48.2 Q ss_pred EEEEECCCCCHHHHHHHHCCCCEEEEECCCCCCHHHHHHHHHHHHCCCCCCHHHHCCCCHHHHC Q ss_conf 7999758988234677502352599842554303688787532200122000000014315521 Q gi|254780398|r 50 TVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFF 113 (284) Q Consensus 50 ~VlEIGpG~G~LT~~Ll~~~~~~v~aiEiD~~~~~~l~~~~~~~~~~~~ii~~Dal~~d~~~~~ 113 (284) .|||.=+|.|.++..+-+.|.+.+.|+|+|+..++.++..+. + +++++|+.+++..++. T Consensus 2 kv~~lF~G~Gg~~~gl~~aG~~~~~a~e~d~~a~~~~~~N~~---~--~~~~~Di~~~~~~~~~ 60 (324) T 1dct_A 2 NLISLFSGAGGLDLGFQKAGFRIICANEYDKSIWKTYESNHS---A--KLIKGDISKISSDEFP 60 (324) T ss_dssp EEEEESCSSCHHHHHHHHHTCEEEEEEECCHHHHHHHHHHCC---S--EEEESCTTTSCGGGSC T ss_pred EEEEECCCCCHHHHHHHHCCCEEEEEEECCHHHHHHHHHHCC---C--CCCCCCHHHCCHHHCC T ss_conf 099948074789999998799799999679999999998789---9--9724982459985767 No 227 >2c7p_A Modification methylase HHAI; DNA methyltransferase, methyltransferase, base flipping, restriction system, transferase; HET: 5CM A1P SAH EPE CIT; 1.7A {Haemophilus haemolyticus} SCOP: c.66.1.26 PDB: 10mh_A* 1m0e_A* 1mht_A* 1hmy_A* 1skm_A* 2c7o_A* 2c7q_A* 2hmy_B* 2hr1_A* 3eeo_A* 3mht_A* 4mht_A* 5mht_A* 6mht_A* 7mht_A* 8mht_A* 9mht_A* 2zcj_A* 2z6u_A* 2z6q_A* ... Probab=94.43 E-value=0.1 Score=29.66 Aligned_cols=73 Identities=21% Similarity=0.185 Sum_probs=54.6 Q ss_pred CCCEEEEECCCCCHHHHHHHHCCCCEEEEECCCCCCHHHHHHHHHHHHCCCCCCHHHHCCCCHHHHCCCCCCEEEEECCC Q ss_conf 99879997589882346775023525998425543036887875322001220000000143155213322201120232 Q gi|254780398|r 47 DGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLP 126 (284) Q Consensus 47 ~~~~VlEIGpG~G~LT~~Ll~~~~~~v~aiEiD~~~~~~l~~~~~~~~~~~~ii~~Dal~~d~~~~~~~~~~~~vvgNLP 126 (284) ++-.|+|.=+|.|.++..+-+.+.+.+.|+|+|+..++.++..+.+ ..++|+.+++...+.+. -.++|-.| T Consensus 10 ~~lr~~~lFsG~GG~~~gl~~aG~~~~~a~e~d~~a~~~~~~N~~~------~~~~Di~~~~~~~~~~~---Dll~gg~P 80 (327) T 2c7p_A 10 TGLRFIDLFAGLGGFRLALESCGAECVYSNEWDKYAQEVYEMNFGE------KPEGDITQVNEKTIPDH---DILCAGFP 80 (327) T ss_dssp TTCEEEEETCTTTHHHHHHHHTTCEEEEEECCCHHHHHHHHHHHSC------CCBSCGGGSCGGGSCCC---SEEEEECC T ss_pred CCCEEEEECCCCCHHHHHHHHCCCEEEEEEECCHHHHHHHHHHCCC------CCCCCHHHCCHHHCCCC---CEEEECCC T ss_conf 9981899680746899999987997999993899999999987799------97575323885147775---67997589 Q ss_pred HH Q ss_conf 24 Q gi|254780398|r 127 YN 128 (284) Q Consensus 127 Yn 128 (284) -+ T Consensus 81 CQ 82 (327) T 2c7p_A 81 CQ 82 (327) T ss_dssp CT T ss_pred CC T ss_conf 87 No 228 >2wa2_A Non-structural protein 5; transferase, S-adenosyl-L- methionine, virion, membrane, flavivirus, N7-methyltransferase, 2'-O-methyltransferase; HET: SAM; 1.80A {Modoc virus} PDB: 2wa1_A* Probab=94.37 E-value=0.056 Score=31.30 Aligned_cols=44 Identities=23% Similarity=0.235 Sum_probs=33.8 Q ss_pred HHHHHHCCCCCCCEEEEECCCCCHHHHHHH-HCCCCEEEEECCCC Q ss_conf 999997198999879997589882346775-02352599842554 Q gi|254780398|r 37 KKIAESSGSLDGITVIEIGAGPGNLTQMLL-TLGARKVIVIEKDQ 80 (284) Q Consensus 37 ~~iv~~~~~~~~~~VlEIGpG~G~LT~~Ll-~~~~~~v~aiEiD~ 80 (284) ..+.+.-.+.+...|+++|+|+|.-|..++ +.++..|.|+++-. T Consensus 72 ~~~~ekf~l~~~g~VVDLGas~GGwTqva~~~~ga~~V~avDvG~ 116 (276) T 2wa2_A 72 AWIDERGGVELKGTVVDLGCGRGSWSYYAASQPNVREVKAYTLGT 116 (276) T ss_dssp HHHHHTTSCCCCEEEEEESCTTCHHHHHHHTSTTEEEEEEECCCC T ss_pred HHHHHHCCCCCCCEEEECCCCCCCHHHHHHHHCCCCEEEEEECCC T ss_conf 999983797768848980778870999998764885799998278 No 229 >3m6w_A RRNA methylase; rRNA methyltransferase, 5-methylcytidine, RSMF, adoMet, MULT specific, methyltransferase, transferase; HET: CXM SAM; 1.30A {Thermus thermophilus HB8} PDB: 3m6v_A* 3m6u_A* 3m6x_A* Probab=94.25 E-value=0.066 Score=30.85 Aligned_cols=81 Identities=17% Similarity=0.210 Sum_probs=58.9 Q ss_pred CCCCCCCHHHHHHHHHHCCCCCCCEEEEECCCCCHHHHHHHHC--CCCEEEEECCCCCCHHHHHHHHHHHHCCCCCCHHH Q ss_conf 8411239899999999719899987999758988234677502--35259984255430368878753220012200000 Q gi|254780398|r 26 GQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTL--GARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDD 103 (284) Q Consensus 26 GQnFL~d~~i~~~iv~~~~~~~~~~VlEIGpG~G~LT~~Ll~~--~~~~v~aiEiD~~~~~~l~~~~~~~~~~~~ii~~D 103 (284) |.=++.|.+- --.+..+++.+++.||+..+|+|.=|..|++. +...++|.|+++.-+..|.+.......+..+++.| T Consensus 81 G~~yiQd~sS-~l~~~~L~~~~g~~VLDlCAAPGGKt~~la~~l~~~g~l~and~~~~R~~~l~~nl~r~g~~~~v~~~d 159 (464) T 3m6w_A 81 GLYYIQEPSA-QAVGVLLDPKPGERVLDLAAAPGGKTTHLAARMGGKGLLLANEVDGKRVRGLLENVERWGAPLAVTQAP 159 (464) T ss_dssp TSEEECCTTT-HHHHHHHCCCTTCEEEESSCTTCHHHHHHHHHTTTCSEEEEECSCHHHHHHHHHHHHHHCCCCEEECSC T ss_pred CEEEEECHHH-HHHHHHCCCCCCCEEEEECCCCCCHHHHHHHHHHCCCEEEECCCCHHHHHHHHHHHHHHCCCEEEEECC T ss_conf 8499948899-999997299999979883658765599999885358357622431788888988888618861687232 Q ss_pred HCCC Q ss_conf 0014 Q gi|254780398|r 104 ALKV 107 (284) Q Consensus 104 al~~ 107 (284) ...+ T Consensus 160 ~~~l 163 (464) T 3m6w_A 160 PRAL 163 (464) T ss_dssp HHHH T ss_pred HHHH T ss_conf 2433 No 230 >3me5_A Cytosine-specific methyltransferase; structural genomics, protein structure initiative, NEW YORK structural genomix research consortium; 1.75A {Shigella flexneri 2A} PDB: 3lx6_A Probab=93.88 E-value=0.064 Score=30.93 Aligned_cols=62 Identities=16% Similarity=0.244 Sum_probs=50.2 Q ss_pred CEEEEECCCCCHHHHHHHHCCCCEEEEECCCCCCHHHHHHHHHHHHCCCCCCHHHHCCCCHHH Q ss_conf 879997589882346775023525998425543036887875322001220000000143155 Q gi|254780398|r 49 ITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEK 111 (284) Q Consensus 49 ~~VlEIGpG~G~LT~~Ll~~~~~~v~aiEiD~~~~~~l~~~~~~~~~~~~ii~~Dal~~d~~~ 111 (284) -.|+|.=+|.|.++..+-+.|.+.|.|+|+|+..++.++.++...+. .+.+++|+.++++.. T Consensus 89 f~vidLFaG~GGl~~G~e~aG~~~v~a~E~d~~A~~ty~~N~~~~p~-~~~~~~Di~~i~~~~ 150 (482) T 3me5_A 89 FRFIDLFAGIGGIRRGFESIGGQCVFTSEWNKHAVRTYKANHYCDPA-THHFNEDIRDITLSH 150 (482) T ss_dssp EEEEEESCTTSHHHHHHHTTTEEEEEEECCCHHHHHHHHHHSCCCTT-TCEEESCTHHHHCTT T ss_pred CCEEEECCCCCHHHHHHHHCCCEEEEEEECCHHHHHHHHHHCCCCCC-CCEECCCHHHCCHHH T ss_conf 98899792708799999987995999996899999999986589986-436356476566101 No 231 >3m4x_A NOL1/NOP2/SUN family protein; mtase domain, PUA domain, RRM motif, transferase; 2.28A {Enterococcus faecium} Probab=93.75 E-value=0.094 Score=29.88 Aligned_cols=79 Identities=13% Similarity=0.158 Sum_probs=57.8 Q ss_pred CCCCHHHHHHHHHHCCCCCCCEEEEECCCCCHHHHHHHHC--CCCEEEEECCCCCCHHHHHHHHHHHH-CCCCCCHHHHC Q ss_conf 1239899999999719899987999758988234677502--35259984255430368878753220-01220000000 Q gi|254780398|r 29 FLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTL--GARKVIVIEKDQQFFPILKDISSQHP-NRLEIIQDDAL 105 (284) Q Consensus 29 FL~d~~i~~~iv~~~~~~~~~~VlEIGpG~G~LT~~Ll~~--~~~~v~aiEiD~~~~~~l~~~~~~~~-~~~~ii~~Dal 105 (284) ++.|++- --.+..+++.+++.||+.-+|+|.=|..|++. +...|+|.|+++.=+..|++...... .++.+.+.|+. T Consensus 88 ~iQd~sS-~l~~~~L~~~pg~~VLDlCAAPGgKt~~la~~l~~~g~l~a~d~~~~R~~~l~~nl~r~g~~n~~v~~~d~~ 166 (456) T 3m4x_A 88 YSQEPSA-MIVGTAAAAKPGEKVLDLCAAPGGKSTQLAAQMKGKGLLVTNEIFPKRAKILSENIERWGVSNAIVTNHAPA 166 (456) T ss_dssp EECCTTT-HHHHHHHCCCTTCEEEESSCTTCHHHHHHHHHHTTCSEEEEECSSHHHHHHHHHHHHHHTCSSEEEECCCHH T ss_pred EEECHHH-HHHHHHHCCCCCCEEEEECCCCCHHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHCCCCCEEEEECCCC T ss_conf 9978899-999997099999989881678647999999970089758863064677789987687527874899932544 Q ss_pred CCC Q ss_conf 143 Q gi|254780398|r 106 KVD 108 (284) Q Consensus 106 ~~d 108 (284) ++. T Consensus 167 ~~~ 169 (456) T 3m4x_A 167 ELV 169 (456) T ss_dssp HHH T ss_pred CCC T ss_conf 355 No 232 >2bm8_A Cephalosporin hydroxylase CMCI; cephamycin biosynthesis; 2.5A {Streptomyces clavuligerus} SCOP: c.66.1.50 PDB: 2bm9_A* 2br5_A* 2br4_A* 2br3_A* Probab=93.66 E-value=0.096 Score=29.84 Aligned_cols=81 Identities=21% Similarity=0.218 Sum_probs=49.0 Q ss_pred CCCCCCCCHHHHHHHHHHCCCCCCCEEEEECCCCCHHHHHHHHC----C-CCEEEEECCCCCCHHHHHHHHHHHHCCCCC Q ss_conf 58411239899999999719899987999758988234677502----3-525998425543036887875322001220 Q gi|254780398|r 25 MGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTL----G-ARKVIVIEKDQQFFPILKDISSQHPNRLEI 99 (284) Q Consensus 25 lGQnFL~d~~i~~~iv~~~~~~~~~~VlEIGpG~G~LT~~Ll~~----~-~~~v~aiEiD~~~~~~l~~~~~~~~~~~~i 99 (284) +|=-.+.++.-+-.+-+.+.-.+.+.|||||.+.|.=|...+.. + ..+++++|+|......... ...++++ T Consensus 59 ~G~p~ik~P~d~~~~qeli~~~KPk~ILEIG~~~GgS~~~~a~~l~~~~~~~~I~~iDId~~~~~~~~~----~~~~I~~ 134 (236) T 2bm8_A 59 RGLRMLKDPDTQAVYHDMLWELRPRTIVELGVYNGGSLAWFRDLTKIMGIDCQVIGIDRDLSRCQIPAS----DMENITL 134 (236) T ss_dssp TTEECCSCHHHHHHHHHHHHHHCCSEEEEECCTTSHHHHHHHHHHHHTTCCCEEEEEESCCTTCCCCGG----GCTTEEE T ss_pred CCEECCCCHHHHHHHHHHHHHHCCCEEEEEECCCCHHHHHHHHHHHHCCCCCEEEEECCCHHHHHHHHC----CCCCCEE T ss_conf 784031598899999999998597989997388082599999999745788459973366566554431----4666379 Q ss_pred CHHHHCCCCH Q ss_conf 0000001431 Q gi|254780398|r 100 IQDDALKVDF 109 (284) Q Consensus 100 i~~Dal~~d~ 109 (284) +.+|...... T Consensus 135 ~~gds~d~~~ 144 (236) T 2bm8_A 135 HQGDCSDLTT 144 (236) T ss_dssp EECCSSCSGG T ss_pred EEECCCCHHH T ss_conf 9922521889 No 233 >2dul_A N(2),N(2)-dimethylguanosine tRNA methyltransferase; tRNA modification enzyme, guanine 26, N(2),N(2)- dimethyltransferase; 1.90A {Pyrococcus horikoshii} SCOP: c.66.1.58 PDB: 2ejt_A* 2eju_A* 2ytz_A* Probab=93.55 E-value=0.11 Score=29.41 Aligned_cols=89 Identities=16% Similarity=0.117 Sum_probs=61.9 Q ss_pred CCCCEEEEECCCCCHHHHH-HHHCCCCEEEEECCCCCCHHHHHHHHHHHH----------------CCCCCCHHHHCCCC Q ss_conf 9998799975898823467-750235259984255430368878753220----------------01220000000143 Q gi|254780398|r 46 LDGITVIEIGAGPGNLTQM-LLTLGARKVIVIEKDQQFFPILKDISSQHP----------------NRLEIIQDDALKVD 108 (284) Q Consensus 46 ~~~~~VlEIGpG~G~LT~~-Ll~~~~~~v~aiEiD~~~~~~l~~~~~~~~----------------~~~~ii~~Dal~~d 108 (284) ..+..|||..+|.|..... ..+.++.+|++.|+|+..++.++++...+. +++.+.++|+...- T Consensus 46 ~~~~~iLD~~sasG~r~iRya~E~~~~~V~~nDi~~~A~~~i~~N~~~N~~~~~~~~~~~~~~~~~~~~~~~~~Da~~~~ 125 (378) T 2dul_A 46 LNPKIVLDALSATGIRGIRFALETPAEEVWLNDISEDAYELMKRNVMLNFDGELRESKGRAILKGEKTIVINHDDANRLM 125 (378) T ss_dssp HCCSEEEESSCTTSHHHHHHHHHSSCSEEEEEESCHHHHHHHHHHHHHHCCSCCEECSSEEEEESSSEEEEEESCHHHHH T ss_pred HCCCEEEECCCCCHHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCEEEEECCCHHHHH T ss_conf 29998999788722999999985899889999699899999999999708653343334332245543675211278898 Q ss_pred HHHHCCCCCCEEEEECCCHHHHHHHHHHHH Q ss_conf 155213322201120232246788999998 Q gi|254780398|r 109 FEKFFNISSPIRIIANLPYNIGTRLLFNWI 138 (284) Q Consensus 109 ~~~~~~~~~~~~vvgNLPYnIss~Il~~ll 138 (284) . .....+.+|-==||.-.++.+..-+ T Consensus 126 ~----~~~~~~DvIDiDPfGsp~pfldsA~ 151 (378) T 2dul_A 126 A----ERHRYFHFIDLDPFGSPMEFLDTAL 151 (378) T ss_dssp H----HSTTCEEEEEECCSSCCHHHHHHHH T ss_pred H----HCCCCCCEECCCCCCCHHHHHHHHH T ss_conf 7----4478774331389998189999999 No 234 >3dou_A Ribosomal RNA large subunit methyltransferase J; cell division, structural genomics, protein structure initiative, PSI; HET: SAM; 1.45A {Thermoplasma volcanium} Probab=93.54 E-value=0.099 Score=29.73 Aligned_cols=54 Identities=35% Similarity=0.522 Sum_probs=40.5 Q ss_pred CCCCCEEEEECCCCCHHHHHHHHCCCCEEEEECCCCCCHHHHHHHHHHHHCCCCCCHHHHCCCCH Q ss_conf 89998799975898823467750235259984255430368878753220012200000001431 Q gi|254780398|r 45 SLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDF 109 (284) Q Consensus 45 ~~~~~~VlEIGpG~G~LT~~Ll~~~~~~v~aiEiD~~~~~~l~~~~~~~~~~~~ii~~Dal~~d~ 109 (284) +.+++.||++|++||+-|+.+.+.. ..+++++..+- ...+ .+..++||+.+-+. T Consensus 23 ~k~~~~vlDLg~aPGgw~q~~~~~~-~~v~~vd~~~~---------~~~~-~v~~~~gD~~~~~~ 76 (191) T 3dou_A 23 VRKGDAVIEIGSSPGGWTQVLNSLA-RKIISIDLQEM---------EEIA-GVRFIRCDIFKETI 76 (191) T ss_dssp SCTTCEEEEESCTTCHHHHHHTTTC-SEEEEEESSCC---------CCCT-TCEEEECCTTSSSH T ss_pred CCCCCEEEEEEECCCCCEEEEEECC-CCEEEEECCCC---------CCCC-CEEEECCCCCCHHH T ss_conf 6799879984102980648766126-62265504556---------5667-81785255542568 No 235 >1kyz_A COMT, caffeic acid 3-O-methyltransferase; lignin, ferulic acid, methylation; HET: SAH FER; 2.20A {Medicago sativa} SCOP: a.4.5.29 c.66.1.12 PDB: 1kyw_A* Probab=93.44 E-value=0.18 Score=28.17 Aligned_cols=96 Identities=18% Similarity=0.173 Sum_probs=53.5 Q ss_pred HHHHHHCCC-CCCCEEEEECCCCCHHHHHHHHCCCC-EEEEECCCCCCHHHHHHHHHHHHCCCCCCHHHHCCCCHHHHCC Q ss_conf 999997198-99987999758988234677502352-5998425543036887875322001220000000143155213 Q gi|254780398|r 37 KKIAESSGS-LDGITVIEIGAGPGNLTQMLLTLGAR-KVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFN 114 (284) Q Consensus 37 ~~iv~~~~~-~~~~~VlEIGpG~G~LT~~Ll~~~~~-~v~aiEiD~~~~~~l~~~~~~~~~~~~ii~~Dal~~d~~~~~~ 114 (284) ..++...+. .....|++||+|.|..+..++++.|. +++.++.-+. .... ....+++.+.+|+.+- ++.. + T Consensus 189 ~~~~~~~~~~~~~~~vlDvGgG~G~~~~~l~~~~P~l~~~~~Dlp~v----~~~~--~~~~r~~~~~~d~~~~-~p~~-D 260 (365) T 1kyz_A 189 KKILETYTGFEGLKSLVDVGGGTGAVINTIVSKYPTIKGINFDLPHV----IEDA--PSYPGVEHVGGDMFVS-IPKA-D 260 (365) T ss_dssp HHHHHHCCTTSSCSEEEEETCTTSHHHHHHHHHCTTSEEEEEECTTT----TTTC--CCCTTEEEEECCTTTC-CCCC-S T ss_pred HHHHHHCCCCCCCEEEEEECCCCHHHHHHHHHHCCCCEEEECCCHHH----HHHC--CCCCCEEEECCCCCCC-CCCC-C T ss_conf 99997577434871799825897389888998799806997448176----5430--3477668961554567-8876-4 Q ss_pred CCCCEEEEECCCHHHHHHHHHHHHHH Q ss_conf 32220112023224678899999852 Q gi|254780398|r 115 ISSPIRIIANLPYNIGTRLLFNWISA 140 (284) Q Consensus 115 ~~~~~~vvgNLPYnIss~Il~~ll~~ 140 (284) .---..++.+.|=.-...||.++... T Consensus 261 ~~~~~~~lh~~~~~~~~~iL~~~~~a 286 (365) T 1kyz_A 261 AVFMKWICHDWSDEHCLKFLKNCYEA 286 (365) T ss_dssp CEECSSSSTTSCHHHHHHHHHHHHHH T ss_pred EEEEEEEEECCCHHHHHHHHHHHHHH T ss_conf 58888542037678999999999996 No 236 >3gcz_A Polyprotein; flavivirus, RNA capping, methyltransferase, viral enzyme structure, ATP-binding, nucleotide-binding; HET: SAM; 1.70A {Yokose virus} Probab=93.12 E-value=0.13 Score=28.94 Aligned_cols=43 Identities=16% Similarity=0.217 Sum_probs=32.8 Q ss_pred HHHHHHCCCCCCCEEEEECCCCCHHHHHHH-HCCCCEEEEECCC Q ss_conf 999997198999879997589882346775-0235259984255 Q gi|254780398|r 37 KKIAESSGSLDGITVIEIGAGPGNLTQMLL-TLGARKVIVIEKD 79 (284) Q Consensus 37 ~~iv~~~~~~~~~~VlEIGpG~G~LT~~Ll-~~~~~~v~aiEiD 79 (284) ..+.+.-.+.+...|+++||++|.-|..++ +.++..|.|+++- T Consensus 80 ~~~~ekf~l~p~g~VVDLGaapGGWSqva~~~~g~~~V~gvDvG 123 (282) T 3gcz_A 80 RWMEERGYVKPTGIVVDLGCGRGGWSYYAASLKNVKKVMAFTLG 123 (282) T ss_dssp HHHHHTTSCCCCEEEEEETCTTCHHHHHHHTSTTEEEEEEECCC T ss_pred HHHHHHCCCCCCCEEEECCCCCCCHHHHHHHHCCCCEEEEEEEC T ss_conf 99998468575883887377898489999875388679999817 No 237 >1fp1_D Isoliquiritigenin 2'-O-methyltransferase; protein-substrate, protein-product complex; HET: SAH HCC; 1.82A {Medicago sativa} SCOP: a.4.5.29 c.66.1.12 PDB: 1fpq_A* Probab=92.65 E-value=0.14 Score=28.84 Aligned_cols=65 Identities=15% Similarity=0.281 Sum_probs=42.5 Q ss_pred HHHHHHCCCC-CCCEEEEECCCCCHHHHHHHHCCCCEEEEECCCCCCHHHHHHHHHHHHCCCCCCHHHHCC Q ss_conf 9999971989-998799975898823467750235259984255430368878753220012200000001 Q gi|254780398|r 37 KKIAESSGSL-DGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALK 106 (284) Q Consensus 37 ~~iv~~~~~~-~~~~VlEIGpG~G~LT~~Ll~~~~~~v~aiEiD~~~~~~l~~~~~~~~~~~~ii~~Dal~ 106 (284) ..++...+.. ....|++||+|.|..+..++++.+. +.++-.|.. +..... ...++++++.+|+.+ T Consensus 198 ~~~~~~~~~~~~~~~vlDvGgG~G~~~~~l~~~~P~-l~~~~~Dlp--~vi~~~--~~~~rv~~~~gD~~~ 263 (372) T 1fp1_D 198 KRMLEIYTGFEGISTLVDVGGGSGRNLELIISKYPL-IKGINFDLP--QVIENA--PPLSGIEHVGGDMFA 263 (372) T ss_dssp HHHHHHCCTTTTCSEEEEETCTTSHHHHHHHHHCTT-CEEEEEECH--HHHTTC--CCCTTEEEEECCTTT T ss_pred HHHHHHCCCCCCCCEEEEECCCCHHHHHHHHHHCCC-CEEEEEECH--HHHHHC--CCCCCCEEECCCCCC T ss_conf 999986564347867998079841899999997899-749997167--877641--356772796675213 No 238 >1xdz_A Methyltransferase GIDB; MCSG, protein structure initiative, structural genomics, methyltransferase fold, PSI; 1.60A {Bacillus subtilis} SCOP: c.66.1.20 Probab=92.34 E-value=0.11 Score=29.52 Aligned_cols=63 Identities=16% Similarity=0.183 Sum_probs=47.0 Q ss_pred CCCCEEEEECCCCCHHHHHHHHCCCC-EEEEECCCCCCHHHHHHHHHHHH-CCCCCCHHHHCCCC Q ss_conf 99987999758988234677502352-59984255430368878753220-01220000000143 Q gi|254780398|r 46 LDGITVIEIGAGPGNLTQMLLTLGAR-KVIVIEKDQQFFPILKDISSQHP-NRLEIIQDDALKVD 108 (284) Q Consensus 46 ~~~~~VlEIGpG~G~LT~~Ll~~~~~-~v~aiEiD~~~~~~l~~~~~~~~-~~~~ii~~Dal~~d 108 (284) .....+++||.|.|.--..|+-..+. +++.+|...+=+..|+....... .+++++++.+-.+. T Consensus 69 ~~~~~ilDiGSGaGfPGi~LaI~~p~~~v~Lves~~KK~~FL~~v~~~L~L~nv~v~~~R~E~~~ 133 (240) T 1xdz_A 69 NQVNTICDVGAGAGFPSLPIKICFPHLHVTIVDSLNKRITFLEKLSEALQLENTTFCHDRAETFG 133 (240) T ss_dssp GGCCEEEEECSSSCTTHHHHHHHCTTCEEEEEESCHHHHHHHHHHHHHHTCSSEEEEESCHHHHT T ss_pred CCCCEEEEECCCCCCHHHHHHHHCCCCCCEEEECHHHHHHHHHHHHHHHCCCCCEEEEEHHHHHC T ss_conf 56886987259998278999986787541887556877899999999838887378730465503 No 239 >3g7u_A Cytosine-specific methyltransferase; DNA-binding, NAD-binding, structural genomics, protein structure initiative, PSI; 1.75A {Escherichia coli O157} Probab=92.23 E-value=0.23 Score=27.51 Aligned_cols=76 Identities=20% Similarity=0.154 Sum_probs=53.8 Q ss_pred CEEEEECCCCCHHHHHHHHCCCCEEEEECCCCCCHHHHHHHHHHHHCCCCCCHHHHCCCCHHHHCCC---CC-CEEEEEC Q ss_conf 8799975898823467750235259984255430368878753220012200000001431552133---22-2011202 Q gi|254780398|r 49 ITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNI---SS-PIRIIAN 124 (284) Q Consensus 49 ~~VlEIGpG~G~LT~~Ll~~~~~~v~aiEiD~~~~~~l~~~~~~~~~~~~ii~~Dal~~d~~~~~~~---~~-~~~vvgN 124 (284) -+|+|.=+|.|.++..+-+.+.+.+.|+|+|+..++..+.++.. -..+++|+-+++...+... .. --.++|- T Consensus 3 l~vidlFsG~GG~~~g~~~aG~~~~~a~e~d~~a~~~y~~N~~~----~~~~~~di~~~~~~~~~~~~~~~~~vDvl~gg 78 (376) T 3g7u_A 3 LNVIDLFSGVGGLSLGAARAGFDVKMAVEIDQHAINTHAINFPR----SLHVQEDVSLLNAEIIKGFFKNDMPIDGIIGG 78 (376) T ss_dssp CEEEEETCTTSHHHHHHHHHTCEEEEEECSCHHHHHHHHHHCTT----SEEECCCGGGCCHHHHHHHHCSCCCCCEEEEC T ss_pred CEEEEECCCCCHHHHHHHHCCCEEEEEEECCHHHHHHHHHHCCC----CCCCCCCHHHCCHHHHHHHHCCCCCCCEEEEC T ss_conf 70999482846899999987993999997899999999988799----97358853348999975540258887779968 Q ss_pred CCHH Q ss_conf 3224 Q gi|254780398|r 125 LPYN 128 (284) Q Consensus 125 LPYn 128 (284) .|-+ T Consensus 79 pPCQ 82 (376) T 3g7u_A 79 PPCQ 82 (376) T ss_dssp CCCC T ss_pred CCCC T ss_conf 8988 No 240 >2py6_A Methyltransferase FKBM; YP_546752.1, structural genomics, joint center for structural genomics, JCSG; 2.15A {Methylobacillus flagellatus KT} SCOP: c.66.1.56 Probab=92.22 E-value=0.25 Score=27.22 Aligned_cols=50 Identities=20% Similarity=0.253 Sum_probs=38.9 Q ss_pred CCCCCCEEEEECCCCCHHHHHHHHC---CCCEEEEECCCCCCHHHHHHHHHHH Q ss_conf 9899987999758988234677502---3525998425543036887875322 Q gi|254780398|r 44 GSLDGITVIEIGAGPGNLTQMLLTL---GARKVIVIEKDQQFFPILKDISSQH 93 (284) Q Consensus 44 ~~~~~~~VlEIGpG~G~LT~~Ll~~---~~~~v~aiEiD~~~~~~l~~~~~~~ 93 (284) .+.+++.+++||+-.|.-+..+++. ...+|+|+|-++..++.|++....+ T Consensus 223 ~l~~nevfIDVGAniG~~s~~f~~~~~~~~~kV~AFEPnp~n~~~L~~Ni~~n 275 (409) T 2py6_A 223 RFSDSEKMVDCGASIGESLAGLIGVTKGKFERVWMIEPDRINLQTLQNVLRRY 275 (409) T ss_dssp CCCSSCEEEEETCTTSHHHHHHHHHHTSCCSEEEEECCCHHHHHHHHHHHHHT T ss_pred CCCCCCEEEECCCCCCHHHHHHHHHCCCCCCEEEEEECCHHHHHHHHHHHHHC T ss_conf 77899889998858888899999966899998999948789999999999864 No 241 >2zkq_m 40S ribosomal protein S18E; protein-RNA complex, 40S ribosomal subunit, ribosomal protein/RNA complex; 8.70A {Canis familiaris} PDB: 1s1h_M 3jyv_M* Probab=90.80 E-value=0.34 Score=26.39 Aligned_cols=48 Identities=21% Similarity=0.418 Sum_probs=38.3 Q ss_pred CCHHHHHHHHHCCC------HHHHHHCCCCCCCCHHCCCHHHHHHHHHHHHHCC Q ss_conf 31389998763181------7899978777465712089999999999986364 Q gi|254780398|r 233 RRKTLRQSLKRLGG------ENLLHQAGIETNLRAENLSIEDFCRITNILTDNQ 280 (284) Q Consensus 233 RRK~l~~~L~~~~~------~~~l~~~~i~~~~R~e~Ls~~~~~~L~~~l~~~~ 280 (284) ..|.+.-+|..++. ..+++.+||+++.|+.+|+.+|.-+|.+.+++.. T Consensus 22 g~K~v~~aLt~I~GIG~~~A~~Ic~~lgI~~~~kvg~Lt~~ql~kl~~~I~~~~ 75 (152) T 2zkq_m 22 GRRKIAFAITAIKGVGRRYAHVVLRKADIDLTKRAGELTEDEVERVITIMQNPR 75 (152) T ss_dssp CSSBHHHHGGGSTTCCHHHHHHHHHHHTCCTTSBTTTSCHHHHHHHHHHHHTTC T ss_pred CCCEEEEEEECCCCCCHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHHH T ss_conf 997887650021065899999999993899543015199999999999985000 No 242 >1zg3_A Isoflavanone 4'-O-methyltransferase; rossman fold, plant protein; HET: 2HI SAH; 2.35A {Medicago truncatula} PDB: 1zga_A* 1zhf_A* 1zgj_A* Probab=90.76 E-value=0.2 Score=27.87 Aligned_cols=82 Identities=15% Similarity=0.277 Sum_probs=49.1 Q ss_pred CCCCEEEEECCCCCHHHHHHHHCCCC-EEEEECCCCCCHHHHHHHHHHHHCCCCCCHHHHCCCCHHHHCCCCCCEEEEEC Q ss_conf 99987999758988234677502352-59984255430368878753220012200000001431552133222011202 Q gi|254780398|r 46 LDGITVIEIGAGPGNLTQMLLTLGAR-KVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIAN 124 (284) Q Consensus 46 ~~~~~VlEIGpG~G~LT~~Ll~~~~~-~v~aiEiD~~~~~~l~~~~~~~~~~~~ii~~Dal~~d~~~~~~~~~~~~vvgN 124 (284) .....|++||+|.|.++..++++.|. +++..+. . +.+.. ... ..+++++.||+++- .+ +....++.+ T Consensus 192 ~~~~~vvDvGGG~G~~~~~l~~~~P~l~~~v~Dl--p--~vi~~-a~~-~~ri~~~~gDff~~-~p-----~~D~~~l~~ 259 (358) T 1zg3_A 192 EGLESLVDVGGGTGGVTKLIHEIFPHLKCTVFDQ--P--QVVGN-LTG-NENLNFVGGDMFKS-IP-----SADAVLLKW 259 (358) T ss_dssp HTCSEEEEETCTTSHHHHHHHHHCTTSEEEEEEC--H--HHHSS-CCC-CSSEEEEECCTTTC-CC-----CCSEEEEES T ss_pred CCCCEEEEECCCCHHHHHHHHHHCCCCCEEEECC--H--HHHHC-CCC-CCCEEEECCCCCCC-CC-----CCCEEEEEE T ss_conf 4875699808985399999998689976278417--7--88745-476-77279971776677-88-----867799861 Q ss_pred CCHHHHH----HHHHHHHH Q ss_conf 3224678----89999985 Q gi|254780398|r 125 LPYNIGT----RLLFNWIS 139 (284) Q Consensus 125 LPYnIss----~Il~~ll~ 139 (284) +=.+-+- .||.++.. T Consensus 260 vlhd~~d~~~~~iL~~~~~ 278 (358) T 1zg3_A 260 VLHDWNDEQSLKILKNSKE 278 (358) T ss_dssp CGGGSCHHHHHHHHHHHHH T ss_pred CCCCCCHHHHHHHHHHHHH T ss_conf 2356766899999999999 No 243 >1g60_A Adenine-specific methyltransferase MBOIIA; structural genomics, DNA methylation, S- adenosylmethionine, PSI, protein structure initiative; HET: SAM; 1.74A {Moraxella bovis} SCOP: c.66.1.11 Probab=90.36 E-value=0.69 Score=24.49 Aligned_cols=30 Identities=23% Similarity=0.373 Sum_probs=12.5 Q ss_pred CCHHHHCCCCHHHHCCCCCCEEEEECCCHHHH Q ss_conf 00000001431552133222011202322467 Q gi|254780398|r 99 IIQDDALKVDFEKFFNISSPIRIIANLPYNIG 130 (284) Q Consensus 99 ii~~Dal~~d~~~~~~~~~~~~vvgNLPYnIs 130 (284) |++||.+++ +..+.+.... -|+.-.||+++ T Consensus 7 i~~gD~l~~-l~~l~d~sVD-lIitdPPY~~~ 36 (260) T 1g60_A 7 IHQMNCFDF-LDQVENKSVQ-LAVIDPPYNLS 36 (260) T ss_dssp EEECCHHHH-HHHSCTTCEE-EEEECCCCSSC T ss_pred EEECHHHHH-HHHCCCCCCC-EEEECCCCCCC T ss_conf 771319999-8538678658-79989998887 No 244 >1fp2_A Isoflavone O-methytransferase; protein-product complex; HET: SAH HMO; 1.40A {Medicago sativa} SCOP: a.4.5.29 c.66.1.12 PDB: 1fpx_A* 2qyo_A* Probab=90.25 E-value=0.94 Score=23.67 Aligned_cols=82 Identities=16% Similarity=0.239 Sum_probs=49.4 Q ss_pred CCCCEEEEECCCCCHHHHHHHHCCCC-EEEEECCCCCCHHHHHHHHHHHHCCCCCCHHHHCCCCHHHHCCCCCCEEEEEC Q ss_conf 99987999758988234677502352-59984255430368878753220012200000001431552133222011202 Q gi|254780398|r 46 LDGITVIEIGAGPGNLTQMLLTLGAR-KVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIAN 124 (284) Q Consensus 46 ~~~~~VlEIGpG~G~LT~~Ll~~~~~-~v~aiEiD~~~~~~l~~~~~~~~~~~~ii~~Dal~~d~~~~~~~~~~~~vvgN 124 (284) .....|++||+|.|.++..++++.|+ +++..+.. +...+ .. ...++.++.+|+.+... +....++.+ T Consensus 187 ~~~~~vlDvGGG~G~~~~~l~~~~P~l~~~v~Dlp----~v~~~-~~-~~~~~~~~~~~~~~~~p------~ad~~~l~~ 254 (352) T 1fp2_A 187 DGLESIVDVGGGTGTTAKIICETFPKLKCIVFDRP----QVVEN-LS-GSNNLTYVGGDMFTSIP------NADAVLLKY 254 (352) T ss_dssp TTCSEEEEETCTTSHHHHHHHHHCTTCEEEEEECH----HHHTT-CC-CBTTEEEEECCTTTCCC------CCSEEEEES T ss_pred CCCEEEEEECCCCCHHHHHHHHHCCCCEEEEEECC----HHHHH-HC-CCCCEEEECCCCCCCCC------CCCEEEEEE T ss_conf 68718986058861889999975899759994170----44144-31-46746985364335798------541788985 Q ss_pred CCHH----HHHHHHHHHHH Q ss_conf 3224----67889999985 Q gi|254780398|r 125 LPYN----IGTRLLFNWIS 139 (284) Q Consensus 125 LPYn----Iss~Il~~ll~ 139 (284) +=++ -...|+.++.. T Consensus 255 vlh~~~d~~~~~iL~~i~~ 273 (352) T 1fp2_A 255 ILHNWTDKDCLRILKKCKE 273 (352) T ss_dssp CGGGSCHHHHHHHHHHHHH T ss_pred EECCCCHHHHHHHHHHHHH T ss_conf 2025887899999999998 No 245 >1ej0_A FTSJ; methyltransferase, adoMet, adenosyl methionine, heat shock proteins, 23S ribosomal RNA; HET: SAM; 1.50A {Escherichia coli} SCOP: c.66.1.2 PDB: 1eiz_A* Probab=89.03 E-value=0.37 Score=26.18 Aligned_cols=77 Identities=19% Similarity=0.253 Sum_probs=44.5 Q ss_pred CCCCCEEEEECCCCCHHHHHHHHCC--CCEEEEECCCCCCHHHHHHHHHHHHCCCCCCHHHHCCCCHHHHC----CCCCC Q ss_conf 8999879997589882346775023--52599842554303688787532200122000000014315521----33222 Q gi|254780398|r 45 SLDGITVIEIGAGPGNLTQMLLTLG--ARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFF----NISSP 118 (284) Q Consensus 45 ~~~~~~VlEIGpG~G~LT~~Ll~~~--~~~v~aiEiD~~~~~~l~~~~~~~~~~~~ii~~Dal~~d~~~~~----~~~~~ 118 (284) +.+++.|+++|++||+-|+.+++.. ...++++++-+. ...+ ....++||+.+.+..... ....- T Consensus 20 ~~~~~~vlDLg~aPGgw~q~~~~~~~~~~~v~~vd~~~~---------~~i~-~~~~~~gd~~~~~~~~~~~~~~~~~~~ 89 (180) T 1ej0_A 20 FKPGMTVVDLGAAPGGWSQYVVTQIGGKGRIIACDLLPM---------DPIV-GVDFLQGDFRDELVMKALLERVGDSKV 89 (180) T ss_dssp CCTTCEEEEESCTTCHHHHHHHHHHCTTCEEEEEESSCC---------CCCT-TEEEEESCTTSHHHHHHHHHHHTTCCE T ss_pred CCCCCEEEEEECCCCCCEEEEEEECCCCCEEEEEECCCC---------CCCC-CCEEECCCCHHHHHHHHHHHHCCCCCC T ss_conf 678986999732589642898875289840899745646---------5568-967851550023456655432246542 Q ss_pred EEEEECCCHHHHH Q ss_conf 0112023224678 Q gi|254780398|r 119 IRIIANLPYNIGT 131 (284) Q Consensus 119 ~~vvgNLPYnIss 131 (284) --|++-.--|.|. T Consensus 90 DlVlSD~ap~~sg 102 (180) T 1ej0_A 90 QVVMSDMAPNMSG 102 (180) T ss_dssp EEEEECCCCCCCS T ss_pred CEEECCCCCCCCC T ss_conf 4885235777678 No 246 >2vqe_M 30S ribosomal protein S13, 30S ribosomal protein S6; tRNA-binding, rRNA-binding, metal-binding, zinc-finger, translation; HET: TM2 PAR; 2.5A {Thermus thermophilus} SCOP: a.156.1.1 PDB: 1gix_P* 1hnw_M* 1hnx_M* 1hnz_M* 1hr0_M 1ibk_M* 1ibl_M* 1ibm_M 1j5e_M 1jgo_P* 1jgp_P* 1jgq_P* 1mj1_P* 1ml5_P* 1n32_M* 1n33_M* 1n34_M 1n36_M 1xmo_M* 1xmq_M* ... Probab=88.99 E-value=0.35 Score=26.37 Aligned_cols=48 Identities=19% Similarity=0.369 Sum_probs=38.0 Q ss_pred CHHHHHHHHHCCC------HHHHHHCCCCCCCCHHCCCHHHHHHHHHHHHHCCC Q ss_conf 1389998763181------78999787774657120899999999999863646 Q gi|254780398|r 234 RKTLRQSLKRLGG------ENLLHQAGIETNLRAENLSIEDFCRITNILTDNQD 281 (284) Q Consensus 234 RK~l~~~L~~~~~------~~~l~~~~i~~~~R~e~Ls~~~~~~L~~~l~~~~~ 281 (284) .|.+.-+|..++. ..++..+||+++.|+.+|+.+|+-+|.+.++++-. T Consensus 12 ~K~v~~aLt~I~GIG~~~A~~Ic~~lGId~~~kvg~Lt~~qi~~l~~~i~~~~~ 65 (126) T 2vqe_M 12 NKRVDVALTYIYGIGKARAKEALEKTGINPATRVKDLTEAEVVRLREYVENTWK 65 (126) T ss_dssp SSBHHHHHTTSSSCCSHHHHHHTTTTTCCTTSBGGGCCHHHHHHHHHHHHTTSC T ss_pred CCEEEEEECCEECCCHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHCCCC T ss_conf 978787620434838999999999859796630163999999999999831451 No 247 >2px2_A Genome polyprotein [contains: capsid protein C (core protein); envelope protein M...; methyltransferase, SAH; HET: SAH; 2.00A {Murray valley encephalitis virus} PDB: 2px4_A* 2px5_A* 2pxa_A* 2pxc_A* 2px8_A* 2oy0_A* Probab=87.35 E-value=0.86 Score=23.90 Aligned_cols=44 Identities=20% Similarity=0.184 Sum_probs=32.4 Q ss_pred HHHHHHHCCCCCCCEEEEECCCCCHHHHHHHH-CCCCEEEEECCC Q ss_conf 99999971989998799975898823467750-235259984255 Q gi|254780398|r 36 LKKIAESSGSLDGITVIEIGAGPGNLTQMLLT-LGARKVIVIEKD 79 (284) Q Consensus 36 ~~~iv~~~~~~~~~~VlEIGpG~G~LT~~Ll~-~~~~~v~aiEiD 79 (284) +..+.+.-.+.+...|+++|+|+|.-|..++. .++..|.++.+- T Consensus 62 L~~~~~~~~~~~~~~vvDlG~~~Ggwt~~~~~~~~v~~V~gvdvG 106 (269) T 2px2_A 62 LRWLVERRFVQPIGKVVDLGCGRGGWSYYAATMKNVQEVRGYTKG 106 (269) T ss_dssp HHHHHHTTSCCCCEEEEEETCTTSHHHHHHTTSTTEEEEEEECCC T ss_pred HHHHHHHCCCCCCCCEEEECCCCCCHHHHHHHHCCCCEEEEEEEC T ss_conf 999998378565880898068898289999873377467999945 No 248 >2zig_A TTHA0409, putative modification methylase; methyltransferase, S- adenosylmethionine, structural genomics, NPPSFA; 2.10A {Thermus thermophilus} PDB: 2zie_A* 2zif_A Probab=85.60 E-value=1.8 Score=21.86 Aligned_cols=30 Identities=23% Similarity=0.258 Sum_probs=13.8 Q ss_pred CCHHHHCCCCHHHHCCCCCCEEEEECCCHHHH Q ss_conf 00000001431552133222011202322467 Q gi|254780398|r 99 IIQDDALKVDFEKFFNISSPIRIIANLPYNIG 130 (284) Q Consensus 99 ii~~Dal~~d~~~~~~~~~~~~vvgNLPYnIs 130 (284) +++||.+++ +..+.+... --|+.-.|||+. T Consensus 24 i~~GD~le~-lk~L~d~SV-DLIitDPPYn~~ 53 (297) T 2zig_A 24 LHVGDAREV-LASFPEASV-HLVVTSPPYWTL 53 (297) T ss_dssp EEESCHHHH-HTTSCTTCE-EEEEECCCCCCC T ss_pred EEECCHHHH-HHHCCCCCC-CEEEECCCCCCC T ss_conf 994768999-962867775-979989699888 No 249 >3gpu_A DNA glycosylase; DNA glycosylase, DNA repair, damage search, base extrusion; HET: DNA 8OG; 1.62A {Geobacillus stearothermophilus} PDB: 3gpx_A* 3gq3_A* 3go8_A* 2f5n_A 2f5o_A 2f5p_A 3gp1_A* 3gq4_A* 3gpy_A* 3gq5_A* 3gpp_A* 2f5q_A* 2f5s_A* 1l1z_A* 1l1t_A* 1l2b_A* 1l2c_A* 1l2d_A* 1r2z_A* 1r2y_A* ... Probab=83.94 E-value=1.1 Score=23.17 Aligned_cols=53 Identities=21% Similarity=0.235 Sum_probs=41.2 Q ss_pred HHHHHCCCCHHHHHHHHH---------CCCHHHHHHCCCCCCCCHHCCCHHHHHHHHHHHHH Q ss_conf 999972731389998763---------18178999787774657120899999999999863 Q gi|254780398|r 226 TQEAFGKRRKTLRQSLKR---------LGGENLLHQAGIETNLRAENLSIEDFCRITNILTD 278 (284) Q Consensus 226 ~~~~F~~RRK~l~~~L~~---------~~~~~~l~~~~i~~~~R~e~Ls~~~~~~L~~~l~~ 278 (284) ....+..++++++..|.. ++..++|-.++|+|..++.+|+.+|+.+|++.+.. T Consensus 147 ~~~~~~~~~~~Ik~~LlDQ~~iaGIGNiya~EiLf~a~I~P~~~~~~Ls~~~~~~L~~~~~~ 208 (256) T 3gpu_A 147 LAERAVKTKRSVKALLLDCTVVAGFGNIYVDESLFRAGILPGRPAASLSSKEIERLHEEMVA 208 (256) T ss_dssp HHHHHHTCCSBHHHHHHCTTTSTTCCHHHHHHHHHHHTCCTTSBGGGCCHHHHHHHHHHHHH T ss_pred HHHHHHCCCCCHHHHHCCCCEECCCCHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHH T ss_conf 98887557764556311365133434889999999731483763133899999999999999 No 250 >1boo_A Protein (N-4 cytosine-specific methyltransferase PVU II); type II DNA-(cytosine N4) methyltransferase, amino methylation, selenomethionine; HET: SAH; 2.80A {Proteus vulgaris} SCOP: c.66.1.11 Probab=83.72 E-value=2.1 Score=21.46 Aligned_cols=32 Identities=19% Similarity=0.347 Sum_probs=15.9 Q ss_pred CCCCHHHHCCCCHHHHCCCCCCEEEEECCCHHHH Q ss_conf 2200000001431552133222011202322467 Q gi|254780398|r 97 LEIIQDDALKVDFEKFFNISSPIRIIANLPYNIG 130 (284) Q Consensus 97 ~~ii~~Dal~~d~~~~~~~~~~~~vvgNLPYnIs 130 (284) -+|++||.+++ +..+.+ ++---|+--.|||+. T Consensus 15 ~~l~~GD~l~~-l~~L~~-~sVdlIytDPPYn~~ 46 (323) T 1boo_A 15 GSMYIGDSLEL-LESFPE-ESISLVMTSPPFALQ 46 (323) T ss_dssp EEEEESCHHHH-GGGSCS-SCEEEEEECCCCSSS T ss_pred CEEEECCHHHH-HHHCCC-CCCCEEEECCCCCCC T ss_conf 86996628999-862704-897989989998577 No 251 >1tdz_A Formamidopyrimidine-DNA glycosylase; DNA repair, FPG, MUTM, FAPY G, hydrolase/DNA complex; HET: FOX; 1.80A {Lactococcus lactis} SCOP: a.156.1.2 b.113.1.1 g.39.1.8 PDB: 1pji_A* 1pm5_A* 1xc8_A* 3c58_A* 1nnj_A 1kfv_A 1pjj_A* Probab=82.39 E-value=1.5 Score=22.50 Aligned_cols=51 Identities=16% Similarity=0.206 Sum_probs=40.1 Q ss_pred HHHCCCCHHHHHHHHH---------CCCHHHHHHCCCCCCCCHHCCCHHHHHHHHHHHHH Q ss_conf 9972731389998763---------18178999787774657120899999999999863 Q gi|254780398|r 228 EAFGKRRKTLRQSLKR---------LGGENLLHQAGIETNLRAENLSIEDFCRITNILTD 278 (284) Q Consensus 228 ~~F~~RRK~l~~~L~~---------~~~~~~l~~~~i~~~~R~e~Ls~~~~~~L~~~l~~ 278 (284) ..+..+++.++..|-. ++..++|=.++|+|..++.+|+.+|+.+|++.+.+ T Consensus 148 ~~~~~~~~~Ik~~LlDQ~~iaGIGNiy~~EiLf~a~I~P~~~~~~L~~~e~~~L~~~~~~ 207 (272) T 1tdz_A 148 EKLRKSTKKIKPYLLEQTLVAGLGNIYVDEVLWLAKIHPEKETNQLIESSIHLLHDSIIE 207 (272) T ss_dssp HHHHHCCSBHHHHHHTSSSSSCCCHHHHHHHHHHTTCCTTCBGGGCCHHHHHHHHHHHHH T ss_pred HHHHHCCCCCCEEEECCCEECCCCHHHHHHHHHHHCCCCCCCHHHCCHHHHHHHHHHHHH T ss_conf 866420332002675076354444737989988727986767524079999999999999 No 252 >1eg2_A Modification methylase RSRI; rossmann fold, exocyclic amino DNA methyltransferase RSRI, DNA binding, DNA modification, DNA methylation; HET: MTA; 1.75A {Rhodobacter sphaeroides} SCOP: c.66.1.11 PDB: 1nw5_A* 1nw6_A* 1nw7_A* 1nw8_A Probab=82.37 E-value=2.5 Score=21.01 Aligned_cols=31 Identities=32% Similarity=0.277 Sum_probs=11.6 Q ss_pred CCCHHHHCCCCHHHHCCCCCCEEEEECCCHHHH Q ss_conf 200000001431552133222011202322467 Q gi|254780398|r 98 EIIQDDALKVDFEKFFNISSPIRIIANLPYNIG 130 (284) Q Consensus 98 ~ii~~Dal~~d~~~~~~~~~~~~vvgNLPYnIs 130 (284) .++.||.+++ +..+.+... --|+--.|||++ T Consensus 41 ~~~~gDcle~-l~~lpd~SV-DLIitDPPYn~~ 71 (319) T 1eg2_A 41 VYDVCDCLDT-LAKLPDDSV-QLIICDPPYNIM 71 (319) T ss_dssp EEEECCHHHH-HHTSCTTCE-EEEEECCCSBCC T ss_pred EEEECCHHHH-HHHCCCCCC-CEEEECCCCCCC T ss_conf 6996528999-822868875-579989999887 No 253 >1lss_A TRK system potassium uptake protein TRKA homolog; KTN domain, NAD, RCK domain, potassium transport, potassium channel, KTRA; HET: NAD; 2.30A {Methanocaldococcus jannaschii} SCOP: c.2.1.9 Probab=81.77 E-value=2.6 Score=20.87 Aligned_cols=78 Identities=21% Similarity=0.217 Sum_probs=46.3 Q ss_pred CCEEEEECCCC-C-HHHHHHHHCCCCEEEEECCCCCCHHHHHHHHHHHHCCCCCCHHHHCCCCHHHHCCCCCCEEEEECC Q ss_conf 98799975898-8-234677502352599842554303688787532200122000000014315521332220112023 Q gi|254780398|r 48 GITVIEIGAGP-G-NLTQMLLTLGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANL 125 (284) Q Consensus 48 ~~~VlEIGpG~-G-~LT~~Ll~~~~~~v~aiEiD~~~~~~l~~~~~~~~~~~~ii~~Dal~~d~~~~~~~~~~~~vvgNL 125 (284) +..|+=+|.|. | .+.+.|.+.+ ..|+.||.|+..++.+.+.+ ...+++||+.+.+.-+-.....--.+++-. T Consensus 4 ~m~ViI~G~G~~G~~la~~L~~~g-~~v~vId~d~~~~~~~~~~~-----~~~vi~gd~~~~~~L~~a~i~~a~~vi~~t 77 (140) T 1lss_A 4 GMYIIIAGIGRVGYTLAKSLSEKG-HDIVLIDIDKDICKKASAEI-----DALVINGDCTKIKTLEDAGIEDADMYIAVT 77 (140) T ss_dssp -CEEEEECCSHHHHHHHHHHHHTT-CEEEEEESCHHHHHHHHHHC-----SSEEEESCTTSHHHHHHTTTTTCSEEEECC T ss_pred CCEEEEECCCHHHHHHHHHHHHCC-CCEEEEEECHHHHHHHHHCC-----CCEEEECCCCHHHHHHHCCCCCCCEEEEEE T ss_conf 999999998999999999999779-95899850156655445314-----745998876157778745913038899950 Q ss_pred CHHHHH Q ss_conf 224678 Q gi|254780398|r 126 PYNIGT 131 (284) Q Consensus 126 PYnIss 131 (284) |..-.. T Consensus 78 ~~d~~N 83 (140) T 1lss_A 78 GKEEVN 83 (140) T ss_dssp SCHHHH T ss_pred CCHHHH T ss_conf 867778 No 254 >2yui_A Anamorsin; cytokine-induced apoptosis inhibitor 1, ciapin1, structural genomics, NPPSFA; NMR {Homo sapiens} Probab=80.65 E-value=0.16 Score=28.51 Aligned_cols=75 Identities=13% Similarity=0.143 Sum_probs=46.0 Q ss_pred CCCCEEEEECCCCCHHHHHHHHCCCCEEEEECCCCCCHHHHHHHHHHHHCCCCCCHHHHCCCCHHHHCCCCCCEEEEECC Q ss_conf 99987999758988234677502352599842554303688787532200122000000014315521332220112023 Q gi|254780398|r 46 LDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANL 125 (284) Q Consensus 46 ~~~~~VlEIGpG~G~LT~~Ll~~~~~~v~aiEiD~~~~~~l~~~~~~~~~~~~ii~~Dal~~d~~~~~~~~~~~~vvgNL 125 (284) .++..|+|+|||.|..+..++.+.+ .+.++ +.+++.++++... .+++++.+.|.+.. ..+. .++--.|++|. T Consensus 3 ~~~~~~~DlGcG~G~~v~~l~~~~~-~vd~~---~~~v~~~~~~~~~-~g~v~v~~~~~l~~--~~~~-~~sfD~v~s~~ 74 (182) T 2yui_A 3 SGSSGMADFGISAGQFVAVVWDKSS-PVEAL---KGLVDKLQALTGN-EGRVSVENIKQLLQ--SAHK-ESSFDIILSGL 74 (182) T ss_dssp SSCCCCSSCCCCTTSEEEEEECTTS-CSHHH---HHHHHHHHHHHTT-TSEEEEEETTHHHH--SCCC-TTCBSEEEESC T ss_pred CCCCEEEEECCCCCHHHHHHHHCCC-CCCHH---HHHHHHHHHHHCC-CCCEEEEEHHHCCC--CCCC-CCCCCEEEECC T ss_conf 8887768966899887898985289-93158---9999999997456-88079987000034--7875-45763899823 Q ss_pred CHH Q ss_conf 224 Q gi|254780398|r 126 PYN 128 (284) Q Consensus 126 PYn 128 (284) -.+ T Consensus 75 ~~~ 77 (182) T 2yui_A 75 VPG 77 (182) T ss_dssp SSS T ss_pred EEC T ss_conf 233 No 255 >2p41_A Type II methyltransferase; vizier, viral enzymes involved in replication, dengue virus methyltransferase, structural genomics; HET: G1G SAH CIT; 1.80A {Dengue virus 2} SCOP: c.66.1.25 PDB: 2p1d_A* 1l9k_A* 2p3o_A* 2p3q_A* 2p40_A* 2p3l_A* 1r6a_A* 3evg_A* Probab=79.77 E-value=3.1 Score=20.45 Aligned_cols=42 Identities=21% Similarity=0.228 Sum_probs=30.5 Q ss_pred HHHHHHCCCCCCCEEEEECCCCCHHHHHHHHCC-CCEEEEECC Q ss_conf 999997198999879997589882346775023-525998425 Q gi|254780398|r 37 KKIAESSGSLDGITVIEIGAGPGNLTQMLLTLG-ARKVIVIEK 78 (284) Q Consensus 37 ~~iv~~~~~~~~~~VlEIGpG~G~LT~~Ll~~~-~~~v~aiEi 78 (284) ..|.+--.+.++..|+++|||+|.-|..++.+. ...|.++.+ T Consensus 72 ~ei~EK~~ikp~g~VVDLGcAPGGWSQvaa~~~~v~~V~G~~i 114 (305) T 2p41_A 72 RWFVERNLVTPEGKVVDLGCGRGGWSYYCGGLKNVREVKGLTK 114 (305) T ss_dssp HHHHHTTSSCCCEEEEEETCTTSHHHHHHHTSTTEEEEEEECC T ss_pred HHHHHCCCCCCCCEEEECCCCCCCHHHHHHHHCCCCCEEEEEE T ss_conf 9999734757698688737689838999986226662168994 No 256 >2oxt_A Nucleoside-2'-O-methyltransferase; flavivirus, viral enzyme, RNA capping, S-adenosyl-L-methionine, viral protein; HET: SAM; 2.90A {Meaban virus} Probab=79.73 E-value=3.1 Score=20.44 Aligned_cols=43 Identities=14% Similarity=0.057 Sum_probs=31.1 Q ss_pred HHHHHHCCCCCCCEEEEECCCCCHHHHHHHHCCC-CEEEEECCC Q ss_conf 9999971989998799975898823467750235-259984255 Q gi|254780398|r 37 KKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGA-RKVIVIEKD 79 (284) Q Consensus 37 ~~iv~~~~~~~~~~VlEIGpG~G~LT~~Ll~~~~-~~v~aiEiD 79 (284) ..|.+.-.+.+...|+++|+|+|.-|...+.+.. ..|.++.+- T Consensus 64 ~~~~e~~~~~~~g~vvDlg~~~Ggws~~~~~~~~v~~V~G~tlG 107 (265) T 2oxt_A 64 AWMEERGYVELTGRVVDLGCGRGGWSYYAASRPHVMDVRAYTLG 107 (265) T ss_dssp HHHHHHTSCCCCEEEEEESCTTSHHHHHHHTSTTEEEEEEECCC T ss_pred HHHHHCCCCCCCCEEEEECCCCCCHHHHHHHHCCCCEEEEEEEC T ss_conf 99997467664882888067887189999763376546778945 No 257 >2g1u_A Hypothetical protein TM1088A; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: AMP; 1.50A {Thermotoga maritima} PDB: 3l4b_A* Probab=79.27 E-value=1.8 Score=21.95 Aligned_cols=76 Identities=16% Similarity=0.172 Sum_probs=45.6 Q ss_pred CCCCCEEEEECCCC--CHHHHHHHHCCCCEEEEECCCCCCHHHHHHHHHHHHCCCCCCHHHHCCCCHHHHCCCCCCEEEE Q ss_conf 89998799975898--8234677502352599842554303688787532200122000000014315521332220112 Q gi|254780398|r 45 SLDGITVIEIGAGP--GNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRII 122 (284) Q Consensus 45 ~~~~~~VlEIGpG~--G~LT~~Ll~~~~~~v~aiEiD~~~~~~l~~~~~~~~~~~~ii~~Dal~~d~~~~~~~~~~~~vv 122 (284) ..+.+.|+=+|.|. -.+.+.|.+.+ ..|+.||.|+..++.+.+.+ + ..+++||+.+-+.-.-.....--.|| T Consensus 16 ~~~~~~IiI~G~g~~G~~ia~~L~~~g-~~vvvId~d~~~~~~l~~~~----~-~~~i~GD~~d~~~L~~a~i~~a~~vI 89 (155) T 2g1u_A 16 KQKSKYIVIFGCGRLGSLIANLASSSG-HSVVVVDKNEYAFHRLNSEF----S-GFTVVGDAAEFETLKECGMEKADMVF 89 (155) T ss_dssp -CCCCEEEEECCSHHHHHHHHHHHHTT-CEEEEEESCGGGGGGSCTTC----C-SEEEESCTTSHHHHHTTTGGGCSEEE T ss_pred HHCCCEEEEECCCHHHHHHHHHHHHCC-CEEEEEECCHHHHHHHHCCC----C-CEEEECCCCCHHHHHHCCHHHCCEEE T ss_conf 415981999899899999999999789-97999946889844312033----4-13697776007888741822468999 Q ss_pred ECCC Q ss_conf 0232 Q gi|254780398|r 123 ANLP 126 (284) Q Consensus 123 gNLP 126 (284) +-.+ T Consensus 90 ~~t~ 93 (155) T 2g1u_A 90 AFTN 93 (155) T ss_dssp ECSS T ss_pred ECCC T ss_conf 9149 No 258 >1ee8_A MUTM (FPG) protein; beta sandwich, zinc finger, helix two-turns helix, riken structural genomics/proteomics initiative, RSGI; 1.90A {Thermus thermophilus HB8} SCOP: a.156.1.2 b.113.1.1 g.39.1.8 Probab=77.68 E-value=3.6 Score=20.06 Aligned_cols=52 Identities=17% Similarity=0.218 Sum_probs=41.3 Q ss_pred HHHHCCCCHHHHHHHHH---------CCCHHHHHHCCCCCCCCHHCCCHHHHHHHHHHHHH Q ss_conf 99972731389998763---------18178999787774657120899999999999863 Q gi|254780398|r 227 QEAFGKRRKTLRQSLKR---------LGGENLLHQAGIETNLRAENLSIEDFCRITNILTD 278 (284) Q Consensus 227 ~~~F~~RRK~l~~~L~~---------~~~~~~l~~~~i~~~~R~e~Ls~~~~~~L~~~l~~ 278 (284) ...+..+++.|+..|.. ++-.++|-.++|+|..++.+|+.+|+-+|++.+.+ T Consensus 136 ~~~~~~~~~~Ik~~LlDQ~~iaGIGN~y~~EiLf~a~I~P~~~~~~L~~~e~~~L~~~~~~ 196 (266) T 1ee8_A 136 FRGLKESARPLKALLLDQRLAAGVGNIYADEALFRARLSPFRPARSLTEEEARRLYRALRE 196 (266) T ss_dssp HHHHHTCCSBHHHHHHHSSSSTTCCHHHHHHHHHHTTCCSSSBGGGCCHHHHHHHHHHHHH T ss_pred HHHHHHCCCHHHHHHCCCCEECCCCHHHHHHHHHHHCCCHHHCCCCCCHHHHHHHHHHHHH T ss_conf 8887513640657621576122466999999999857980232672899999999999999 No 259 >3a46_A Formamidopyrimidine-DNA glycosylase; helix two turns helix, zinc-LESS finger, hydrolase, THF, glycosidase, lyase, multifunctional enzyme; HET: DNA 3DR; 2.20A {Acanthamoeba polyphaga mimivirus} PDB: 3a45_A* 3a42_A Probab=76.73 E-value=2.7 Score=20.80 Aligned_cols=47 Identities=15% Similarity=0.131 Sum_probs=35.3 Q ss_pred CCCCHHHHHHHH----------HCCCHHHHHHCCCCCCCCHHCCCHHHHHHHHHHHH Q ss_conf 273138999876----------31817899978777465712089999999999986 Q gi|254780398|r 231 GKRRKTLRQSLK----------RLGGENLLHQAGIETNLRAENLSIEDFCRITNILT 277 (284) Q Consensus 231 ~~RRK~l~~~L~----------~~~~~~~l~~~~i~~~~R~e~Ls~~~~~~L~~~l~ 277 (284) ..+++.+...|- +++..++|-.++|+|..++.+||.+|+.+|++.+. T Consensus 151 ~~~~~~ik~~LLdq~~i~aGIGNiya~EiLf~a~I~P~~~~~~Ls~~e~~~L~~~i~ 207 (289) T 3a46_A 151 KKYKQPIVALLMDQKKIGSGLGNYLVAEILYRAKIDPHKLGSNLTDQEIENLWYWIK 207 (289) T ss_dssp GGCCSBHHHHHHCSSSSCBCCCHHHHHHHHHHTTBCTTCBGGGCCHHHHHHHHHHHH T ss_pred HHHHHHHHHHHHCCCCEECCCCHHHHHHHHHHHHCCHHHHHHHCCHHHHHHHHHHHH T ss_conf 542022457752466267064089999999985068546667499999999999999 No 260 >3fwz_A Inner membrane protein YBAL; TRKA-N domain, E.coli, structural genomics, PSI-2, protein structure initiative; HET: MSE AMP; 1.79A {Escherichia coli k-12} Probab=74.46 E-value=4.4 Score=19.53 Aligned_cols=83 Identities=12% Similarity=0.175 Sum_probs=48.3 Q ss_pred CCEEEEECCCCCHHHHHHH----HCCCCEEEEECCCCCCHHHHHHHHHHHHCCCCCCHHHHCCCCHHHHCCCCCCEEEEE Q ss_conf 9879997589882346775----023525998425543036887875322001220000000143155213322201120 Q gi|254780398|r 48 GITVIEIGAGPGNLTQMLL----TLGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIA 123 (284) Q Consensus 48 ~~~VlEIGpG~G~LT~~Ll----~~~~~~v~aiEiD~~~~~~l~~~~~~~~~~~~ii~~Dal~~d~~~~~~~~~~~~vvg 123 (284) .+.|+=+| .|.+++.++ +.+ ..+++||.|+..++.+++. .+.+++||+.+-+.-+-...+.--.||. T Consensus 7 ~~HviI~G--~g~~g~~l~~~L~~~~-~~vvvId~d~~~~~~~~~~------g~~~i~GD~~~~~~L~~a~i~~a~~vi~ 77 (140) T 3fwz_A 7 CNHALLVG--YGRVGSLLGEKLLASD-IPLVVIETSRTRVDELRER------GVRAVLGNAANEEIMQLAHLECAKWLIL 77 (140) T ss_dssp CSCEEEEC--CSHHHHHHHHHHHHTT-CCEEEEESCHHHHHHHHHT------TCEEEESCTTSHHHHHHTTGGGCSEEEE T ss_pred CCCEEEEC--CCHHHHHHHHHHHHCC-CCEEEEECCCHHHHHHHHC------CCEEEECCCCCHHHHHHHCHHHHCEEEE T ss_conf 69999989--6889999999999789-9789998880775015653------9658851589999999727445189999 Q ss_pred CCCHHHHHHHHHHHHH Q ss_conf 2322467889999985 Q gi|254780398|r 124 NLPYNIGTRLLFNWIS 139 (284) Q Consensus 124 NLPYnIss~Il~~ll~ 139 (284) -.|-.-++-.+...+. T Consensus 78 ~~~~d~~n~~~~~~~r 93 (140) T 3fwz_A 78 TIPNGYEAGEIVASAR 93 (140) T ss_dssp CCSCHHHHHHHHHHHH T ss_pred CCCCHHHHHHHHHHHH T ss_conf 8798899999999999 No 261 >1k82_A Formamidopyrimidine-DNA glycosylase; protein-DNA complex, DNA repair, beta sandwich, zinc finger, helix two-turns helix, hydrolase/DNA complex; HET: PED; 2.10A {Escherichia coli} SCOP: a.156.1.2 b.113.1.1 g.39.1.8 Probab=74.39 E-value=3.8 Score=19.92 Aligned_cols=53 Identities=17% Similarity=0.293 Sum_probs=40.0 Q ss_pred HHHHHCCCCHHHHHHHHH---------CCCHHHHHHCCCCCCCCHHCCCHHHHHHHHHHHHH Q ss_conf 999972731389998763---------18178999787774657120899999999999863 Q gi|254780398|r 226 TQEAFGKRRKTLRQSLKR---------LGGENLLHQAGIETNLRAENLSIEDFCRITNILTD 278 (284) Q Consensus 226 ~~~~F~~RRK~l~~~L~~---------~~~~~~l~~~~i~~~~R~e~Ls~~~~~~L~~~l~~ 278 (284) ....+..++..++..|.. ++-.++|=.++|.|..++.+|+.+++.+|++.+.. T Consensus 142 ~~~~~~~~~~~ik~~LlDQ~~iaGIGN~y~~EiLf~a~IhP~~~~~~L~~~e~~~L~~~~~~ 203 (268) T 1k82_A 142 LHQKCAKKKTAIKPWLMDNKLVVGVGNIYASESLFAAGIHPDRLASSLSLAECELLARVIKA 203 (268) T ss_dssp HHHHHTTCCSBHHHHHTCTTTCSSCCHHHHHHHHHHHTCCTTSBGGGCCHHHHHHHHHHHHH T ss_pred HHHHHHCCCCCCCEEEECCCCCCCCCHHHHHHHHHHHCCCCCCCHHHCCHHHHHHHHHHHHH T ss_conf 99986066655414886176046675889999998727986686323999999999999999 No 262 >1mu5_A Type II DNA topoisomerase VI subunit B; GHKL ATPase, helix two-turns helix; 2.00A {Sulfolobus shibatae} SCOP: a.156.1.3 d.14.1.3 d.122.1.2 PDB: 1mx0_A* 1z5b_A* 1z5a_A* 1z59_A* 1z5c_A* 2hkj_A* Probab=73.90 E-value=4.5 Score=19.44 Aligned_cols=109 Identities=18% Similarity=0.252 Sum_probs=59.3 Q ss_pred HHHHHHHHHHCCCCCEEEECCCCCCEECCCCCCCEE---EEEECCCCCCCCCCHHHHHHHHHHHHCCCCHHHHHHHHHCC Q ss_conf 233234543201332012000110000105787578---87301258855347678999999997273138999876318 Q gi|254780398|r 169 PHYGRLSVLTGWRTKATMMFDISPHVFFPSPKVTST---VIHFIPHLNPIPCCLESLKKITQEAFGKRRKTLRQSLKRLG 245 (284) Q Consensus 169 k~Yg~LSv~~q~~~~v~~~~~V~~~~F~P~PkVdS~---vi~l~pk~~~~~~~~~~~~~~~~~~F~~RRK~l~~~L~~~~ 245 (284) .+|=+-+.+++.+..+.+...-.....+++. ++.. ...+.|+ |...+...+..+++.. .+..++..=|.+.+ T Consensus 189 ~eyl~rtAi~nPha~i~~~~p~~e~~~~~r~-~~~lP~~p~eikPH--P~gv~l~~l~~ml~~~--~~~~~l~~FL~~~F 263 (471) T 1mu5_A 189 YEYIKRTYIITPYAEFIFKDPEGNVTYYPRL-TNKIPKPPQEVKPH--PYGVDREEIKILINNL--KRDYTIKEFLVNEF 263 (471) T ss_dssp HHHHHHHHHHCTTCEEEEECTTCCEEEECCC-CCCCCCCCCCCCCC--GGGCCHHHHHHHSTTC--SSCCBHHHHHTTSS T ss_pred HHHHHHHHHCCCCEEEEEECCCCCEEEEECC-CCCCCCCCHHCCCC--CCCCCHHHHHHHHHHC--CCCCCHHHHHHHHC T ss_conf 9999887640887189998699974896241-12378973312688--0020067799999855--46662678888754 Q ss_pred C-------HHHHHHCCCCCCCCHHCCCHHHHHHHHHHHHHCCCC Q ss_conf 1-------789997877746571208999999999998636466 Q gi|254780398|r 246 G-------ENLLHQAGIETNLRAENLSIEDFCRITNILTDNQDI 282 (284) Q Consensus 246 ~-------~~~l~~~~i~~~~R~e~Ls~~~~~~L~~~l~~~~~i 282 (284) + .++++..+++++.+|.+|+.++..+|.+.+.+.+++ T Consensus 264 s~V~~~~a~~i~~~~g~~~~~~p~~l~~~e~~~l~~a~~~~~~~ 307 (471) T 1mu5_A 264 QSIGDTTADKILELAGLKPNKKVKNLTEEEITRLVETFKKYEDF 307 (471) T ss_dssp SSCCHHHHHHHHHHTTCCTTSBGGGCCTTHHHHHHHHHHHCCCC T ss_pred CCCCHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHHCCC T ss_conf 77698999999997499977771449999999999999853046 No 263 >3imf_A Short chain dehydrogenase; structural genomics, infectious diseases, center for structural genomics of infectious diseases, oxidoreductase; HET: MSE; 1.99A {Bacillus anthracis str} Probab=73.74 E-value=3.3 Score=20.25 Aligned_cols=63 Identities=21% Similarity=0.307 Sum_probs=46.8 Q ss_pred CCCCCEEEEECCCCC---HHHHHHHHCCCCEEEEECCCCCCHHHHHHHHHHHHCCCCCCHHHHCCCC Q ss_conf 899987999758988---2346775023525998425543036887875322001220000000143 Q gi|254780398|r 45 SLDGITVIEIGAGPG---NLTQMLLTLGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVD 108 (284) Q Consensus 45 ~~~~~~VlEIGpG~G---~LT~~Ll~~~~~~v~aiEiD~~~~~~l~~~~~~~~~~~~ii~~Dal~~d 108 (284) -.+++.+|=.|.+.| ++.+.+++.++ +|+...+++.-++.+.+.......++..+.+|+.+.+ T Consensus 3 sLk~KvalITGas~GIG~aia~~la~~Ga-~V~i~~r~~~~l~~~~~~l~~~g~~~~~~~~Dv~~~~ 68 (257) T 3imf_A 3 AMKEKVVIITGGSSGMGKGMATRFAKEGA-RVVITGRTKEKLEEAKLEIEQFPGQILTVQMDVRNTD 68 (257) T ss_dssp TTTTCEEEETTTTSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHHHCCSTTCEEEEECCTTCHH T ss_pred CCCCCEEEEECCCCHHHHHHHHHHHHCCC-EEEEEECCHHHHHHHHHHHHHCCCCEEEEEECCCCHH T ss_conf 75849899938987899999999998799-8999979889999999999856994899993089999 No 264 >3lkz_A Non-structural protein 5; flavivirus, methyltransferase, inhibitor, P nucleotide-binding, RNA replication, viral protein; HET: SFG; 2.00A {West nile virus} Probab=71.62 E-value=5.1 Score=19.11 Aligned_cols=43 Identities=23% Similarity=0.193 Sum_probs=30.9 Q ss_pred HHHHHHHCCCCCCCEEEEECCCCCHHHHHHHHCC-CCEEEEECC Q ss_conf 9999997198999879997589882346775023-525998425 Q gi|254780398|r 36 LKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLG-ARKVIVIEK 78 (284) Q Consensus 36 ~~~iv~~~~~~~~~~VlEIGpG~G~LT~~Ll~~~-~~~v~aiEi 78 (284) +..|.+--.+.+...|+++|||+|.-|...+.+. ...|.++.+ T Consensus 83 L~~i~Ek~~l~p~G~VVDLGcapGGWSqvAa~~~~v~~V~G~tl 126 (321) T 3lkz_A 83 LRWLVERRFLEPVGKVIDLGCGRGGWCYYMATQKRVQEVRGYTK 126 (321) T ss_dssp HHHHHHTTSCCCCEEEEEETCTTCHHHHHHTTCTTEEEEEEECC T ss_pred HHHHHHHCCCCCCCEEEECCCCCCCHHHHHHHCCCCCCEEEEEE T ss_conf 99999805855088688747688718899875336663047994 No 265 >1k3x_A Endonuclease VIII; hydrolase/DNA; HET: BRU PED; 1.25A {Escherichia coli} SCOP: a.156.1.2 b.113.1.1 g.39.1.8 PDB: 1k3w_A* 1q39_A 2ea0_A* 2oq4_A* 1q3c_A 2opf_A* 1q3b_A* Probab=71.62 E-value=5.1 Score=19.11 Aligned_cols=46 Identities=20% Similarity=0.303 Sum_probs=36.9 Q ss_pred CCHHHHHHHH---------HCCCHHHHHHCCCCCCCCHHCCCHHHHHHHHHHHHH Q ss_conf 3138999876---------318178999787774657120899999999999863 Q gi|254780398|r 233 RRKTLRQSLK---------RLGGENLLHQAGIETNLRAENLSIEDFCRITNILTD 278 (284) Q Consensus 233 RRK~l~~~L~---------~~~~~~~l~~~~i~~~~R~e~Ls~~~~~~L~~~l~~ 278 (284) ++++++..|. +++..++|-.++|+|..++.+|+.+|+-+|++.+.+ T Consensus 149 ~~~~Ik~~LlDQ~~iaGIGNiya~EiLf~a~I~P~~~~~~Ls~~~~~~L~~~i~~ 203 (262) T 1k3x_A 149 RNRQFAGLLLDQAFLAGLGNYLRVEILWQVGLTGNHKAKDLNAAQLDALAHALLE 203 (262) T ss_dssp TTSCHHHHTTCTTTSBTCCHHHHHHHHHHHTCCSSCCGGGSCHHHHHHHHHHHHH T ss_pred CCHHHHHHHHCCCCCCCCCHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHH T ss_conf 0068999984177445656999999998720685450134447789999999999 No 266 >2z1m_A GDP-D-mannose dehydratase; short-chain dehydrogenase/reductase, lyase, structural genomics, NPPSFA; HET: NDP GDP; 2.00A {Aquifex aeolicus VF5} PDB: 2z95_A* Probab=71.61 E-value=5.1 Score=19.11 Aligned_cols=57 Identities=28% Similarity=0.383 Sum_probs=35.7 Q ss_pred CCEEEEECCCCC----HHHHHHHHCCCCEEEEECCCCCCH--HHHHHHHHHHHCCCCCCHHHHCCCC Q ss_conf 987999758988----234677502352599842554303--6887875322001220000000143 Q gi|254780398|r 48 GITVIEIGAGPG----NLTQMLLTLGARKVIVIEKDQQFF--PILKDISSQHPNRLEIIQDDALKVD 108 (284) Q Consensus 48 ~~~VlEIGpG~G----~LT~~Ll~~~~~~v~aiEiD~~~~--~~l~~~~~~~~~~~~ii~~Dal~~d 108 (284) ++.||=.|. +| .|++.|++++. +|+++.+...-. ..+.+.. ...+++++++|..+.+ T Consensus 3 ~KkilVTG~-tGfIGs~lv~~Ll~~g~-~V~~~dr~~~~~~~~~~~~~~--~~~~~~~v~~Di~d~~ 65 (345) T 2z1m_A 3 GKRALITGI-RGQDGAYLAKLLLEKGY-EVYGADRRSGEFASWRLKELG--IENDVKIIHMDLLEFS 65 (345) T ss_dssp CCEEEEETT-TSHHHHHHHHHHHHTTC-EEEEECSCCSTTTTHHHHHTT--CTTTEEECCCCTTCHH T ss_pred CCEEEEECC-CCHHHHHHHHHHHHCCC-EEEEEECCCCCCCHHHHHHHC--CCCCCEEEEEECCCHH T ss_conf 098999899-87899999999997839-899998999764345588743--2689779980367857 No 267 >3eld_A Methyltransferase; flavivirus, RNA capping, guanylyltransferase, viral enzyme structure; HET: SFG; 1.90A {Wesselsbron virus} PDB: 3elu_A* 3elw_A* 3ely_A* 3emb_A* 3emd_A* Probab=71.01 E-value=4.5 Score=19.45 Aligned_cols=34 Identities=15% Similarity=0.157 Sum_probs=25.5 Q ss_pred HHHHHHHCCCCCCCEEEEECCCCCHHHHHHHHCC Q ss_conf 9999997198999879997589882346775023 Q gi|254780398|r 36 LKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLG 69 (284) Q Consensus 36 ~~~iv~~~~~~~~~~VlEIGpG~G~LT~~Ll~~~ 69 (284) +..|.+--.+.++..|+++|+|+|.-|..++.+. T Consensus 70 L~ei~ek~~l~p~g~VVDLG~aPGGWSQvaa~~~ 103 (300) T 3eld_A 70 IRWLHERGYLRITGRVLDLGCGRGGWSYYAAAQK 103 (300) T ss_dssp HHHHHHHTSCCCCEEEEEETCTTCHHHHHHHTST T ss_pred HHHHHHCCCCCCCCEEEEECCCCCHHHHHHHHHC T ss_conf 9999970670458838983778964999998753 No 268 >3cxt_A Dehydrogenase with different specificities; rossman fold, oxidoreductase; HET: NAP GKR; 1.90A {Streptococcus suis} PDB: 3cxr_A* Probab=70.40 E-value=5.3 Score=18.99 Aligned_cols=62 Identities=16% Similarity=0.126 Sum_probs=46.0 Q ss_pred CCCCEEEEECCCCC---HHHHHHHHCCCCEEEEECCCCCCHHHHHHHHHHHHCCCCCCHHHHCCCC Q ss_conf 99987999758988---2346775023525998425543036887875322001220000000143 Q gi|254780398|r 46 LDGITVIEIGAGPG---NLTQMLLTLGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVD 108 (284) Q Consensus 46 ~~~~~VlEIGpG~G---~LT~~Ll~~~~~~v~aiEiD~~~~~~l~~~~~~~~~~~~ii~~Dal~~d 108 (284) .+++.+|=.|.+.| ++.+.|++.++ +|+...++..-.+.+.+.......++..+.+|+.+.+ T Consensus 32 L~gK~alVTGas~GIG~aiA~~la~~Ga-~Vvi~~r~~~~~~~~~~~~~~~g~~~~~~~~Dv~~~~ 96 (291) T 3cxt_A 32 LKGKIALVTGASYGIGFAIASAYAKAGA-TIVFNDINQELVDRGMAAYKAAGINAHGYVCDVTDED 96 (291) T ss_dssp CTTCEEEEETCSSHHHHHHHHHHHHTTC-EEEEEESSHHHHHHHHHHHHHTTCCCEEEECCTTCHH T ss_pred CCCCEEEEECCCCHHHHHHHHHHHHCCC-EEEEEECCHHHHHHHHHHHHHCCCCEEEEEEECCCHH T ss_conf 9998799928785999999999998799-8999979999999999999854995899996289999 No 269 >2nyu_A Putative ribosomal RNA methyltransferase 2; SAM, structural genomics, structural genomics consortium, SGC; HET: SAM; 1.76A {Homo sapiens} Probab=68.05 E-value=3.3 Score=20.25 Aligned_cols=24 Identities=29% Similarity=0.542 Sum_probs=20.8 Q ss_pred CCCCCEEEEECCCCCHHHHHHHHC Q ss_conf 899987999758988234677502 Q gi|254780398|r 45 SLDGITVIEIGAGPGNLTQMLLTL 68 (284) Q Consensus 45 ~~~~~~VlEIGpG~G~LT~~Ll~~ 68 (284) +.++..|+++|++||+-|+.++++ T Consensus 20 ~~~~~~vlDLg~aPGgw~q~~~~~ 43 (196) T 2nyu_A 20 LRPGLRVLDCGAAPGAWSQVAVQK 43 (196) T ss_dssp CCTTCEEEEETCCSCHHHHHHHHH T ss_pred CCCCCEEEEECCCCCHHHHHHHHH T ss_conf 579987999657897389999998 No 270 >3ofp_M 30S ribosomal protein S13; protein biosynthesis, ribosomes, RNA, tRNA, transfer, eryThr ketolide, macrolide, antibiotic, EXIT, peptidyl; 3.10A {Escherichia coli} PDB: 3fih_M* 2wwl_M 2qal_M* 1p6g_M 1p87_M 2aw7_M 2avy_M 2i2u_M 2i2p_M* 2qan_M* 2qb9_M* 2qbb_M* 2qbd_M 2qbf_M 2qbh_M* 2qbj_M* 2qou_M* 2qow_M* 2qoy_M* 2qp0_M* ... Probab=67.35 E-value=0.61 Score=24.85 Aligned_cols=46 Identities=20% Similarity=0.281 Sum_probs=31.6 Q ss_pred CHHHHHHHHHCCC------HHHHHHCCCCCCCCHHCCCHHHHHHHHHHHHHC Q ss_conf 1389998763181------789997877746571208999999999998636 Q gi|254780398|r 234 RKTLRQSLKRLGG------ENLLHQAGIETNLRAENLSIEDFCRITNILTDN 279 (284) Q Consensus 234 RK~l~~~L~~~~~------~~~l~~~~i~~~~R~e~Ls~~~~~~L~~~l~~~ 279 (284) .|.+.-+|..++. ..++..+|++++.|+.+|+.+|+-.|.+.+.++ T Consensus 11 ~K~v~~ALt~I~GIG~~~A~~Ic~~lgi~~~~rv~~Lt~~qi~~l~~~i~~~ 62 (113) T 3ofp_M 11 HKHAVIALTSIYGVGKTRSKAILAAAGIAEDVKISELSEGQIDTLRDEVAKF 62 (113) T ss_dssp CCCHHHHHTSSSSCCSSHHHHGGGTTTCCSSCCSSSCCTTSSTTTHHHHHSS T ss_pred CCEEEEEEECEECCCHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHC T ss_conf 9786655014347489999999998498987404859999999999998610 No 271 >3h7a_A Short chain dehydrogenase; oxidoreductase, PSI-2, NYSGXRC, structural genomics, protein structure initiative; 1.87A {Rhodopseudomonas palustris} Probab=67.19 E-value=6.3 Score=18.53 Aligned_cols=61 Identities=21% Similarity=0.165 Sum_probs=44.7 Q ss_pred CCCEEEEECCCCC---HHHHHHHHCCCCEEEEECCCCCCHHHHHHHHHHHHCCCCCCHHHHCCCC Q ss_conf 9987999758988---2346775023525998425543036887875322001220000000143 Q gi|254780398|r 47 DGITVIEIGAGPG---NLTQMLLTLGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVD 108 (284) Q Consensus 47 ~~~~VlEIGpG~G---~LT~~Ll~~~~~~v~aiEiD~~~~~~l~~~~~~~~~~~~ii~~Dal~~d 108 (284) ++..||=.|.+.| ++.+.+++.|+ +|+...++..-++.+.+.......++..+.+|+.+.+ T Consensus 6 knk~vlITGas~GIG~aiA~~la~~Ga-~V~i~~r~~~~l~~~~~~i~~~g~~~~~~~~Dvs~~~ 69 (252) T 3h7a_A 6 RNATVAVIGAGDYIGAEIAKKFAAEGF-TVFAGRRNGEKLAPLVAEIEAAGGRIVARSLDARNED 69 (252) T ss_dssp CSCEEEEECCSSHHHHHHHHHHHHTTC-EEEEEESSGGGGHHHHHHHHHTTCEEEEEECCTTCHH T ss_pred CCCEEEEECCCHHHHHHHHHHHHHCCC-EEEEEECCHHHHHHHHHHHHHCCCEEEEEECCCCCHH T ss_conf 999899975855899999999998799-9999989999999999999963983999977768999 No 272 >3evf_A RNA-directed RNA polymerase NS5; NS5 methyltransferase, RNA CAP binding, ATP-binding, capsid protein, cleavage on PAIR of basic residues; HET: GTA SAH; 1.45A {Yellow fever virus 17D} PDB: 3evb_A* 3evc_A* 3evd_A* 3eve_A* 3eva_A* Probab=66.16 E-value=6 Score=18.68 Aligned_cols=30 Identities=20% Similarity=0.153 Sum_probs=24.0 Q ss_pred HHHHCCCCCCCEEEEECCCCCHHHHHHHHC Q ss_conf 999719899987999758988234677502 Q gi|254780398|r 39 IAESSGSLDGITVIEIGAGPGNLTQMLLTL 68 (284) Q Consensus 39 iv~~~~~~~~~~VlEIGpG~G~LT~~Ll~~ 68 (284) |.+--.+.++..|+++|+|+|.-|..++++ T Consensus 66 I~ek~~lkp~~~VVDLGaAPGGWSQvaa~~ 95 (277) T 3evf_A 66 FHERGYVKLEGRVIDLGCGRGGWCYYAAAQ 95 (277) T ss_dssp HHHTTSSCCCEEEEEETCTTCHHHHHHHTS T ss_pred HHHCCCCCCCCEEEEECCCCCHHHHHHHHH T ss_conf 998068577987999267886899999985 No 273 >3l4b_C TRKA K+ channel protien TM1088B; potassium channel, ring-gating complex, structural genomics, PSI-2-2, protein structure initiative; HET: AMP; 3.45A {Thermotoga maritima} Probab=65.81 E-value=6.2 Score=18.59 Aligned_cols=72 Identities=21% Similarity=0.228 Sum_probs=39.8 Q ss_pred EEEECCCCCHHHHHHHH----CCCCEEEEECCCCCCHHHHHHHHHHHHCCCCCCHHHHCCCCHHHHCCCCCCEEEEECCC Q ss_conf 99975898823467750----23525998425543036887875322001220000000143155213322201120232 Q gi|254780398|r 51 VIEIGAGPGNLTQMLLT----LGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLP 126 (284) Q Consensus 51 VlEIGpG~G~LT~~Ll~----~~~~~v~aiEiD~~~~~~l~~~~~~~~~~~~ii~~Dal~~d~~~~~~~~~~~~vvgNLP 126 (284) |+=+|. |.++..+++ .+ ..|+.+|.|+..+..+.+.+ ...+++||+..-+.-+-.....--.+|+-.+ T Consensus 3 iiI~G~--g~~g~~la~~L~~~g-~~vvvid~d~~~~~~~~~~~-----~~~~i~gD~~~~~~L~~a~i~~a~~~ia~t~ 74 (218) T 3l4b_C 3 VIIIGG--ETTAYYLARSMLSRK-YGVVIINKDRELCEEFAKKL-----KATIIHGDGSHKEILRDAEVSKNDVVVILTP 74 (218) T ss_dssp EEEECC--HHHHHHHHHHHHHTT-CCEEEEESCHHHHHHHHHHS-----SSEEEESCTTSHHHHHHHTCCTTCEEEECCS T ss_pred EEEECC--CHHHHHHHHHHHHCC-CCEEEEECCHHHHHHHHHHC-----CCEEEECCCCCHHHHHHHHCCCCCEEEECCC T ss_conf 999998--899999999999789-98999999999999999852-----6307854543268887664046654764158 Q ss_pred ---HHHH Q ss_conf ---2467 Q gi|254780398|r 127 ---YNIG 130 (284) Q Consensus 127 ---YnIs 130 (284) .|+. T Consensus 75 ~D~~N~~ 81 (218) T 3l4b_C 75 RDEVNLF 81 (218) T ss_dssp CHHHHHH T ss_pred CHHHHHH T ss_conf 7888899 No 274 >1yb1_A 17-beta-hydroxysteroid dehydrogenase type XI; short chain dehydrogenase, human, structural genomics, structural genomics consortium, SGC; HET: AE2; 1.95A {Homo sapiens} SCOP: c.2.1.2 Probab=65.80 E-value=6.7 Score=18.36 Aligned_cols=62 Identities=15% Similarity=0.166 Sum_probs=46.7 Q ss_pred CCCCEEEEECCCCC---HHHHHHHHCCCCEEEEECCCCCCHHHHHHHHHHHHCCCCCCHHHHCCCC Q ss_conf 99987999758988---2346775023525998425543036887875322001220000000143 Q gi|254780398|r 46 LDGITVIEIGAGPG---NLTQMLLTLGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVD 108 (284) Q Consensus 46 ~~~~~VlEIGpG~G---~LT~~Ll~~~~~~v~aiEiD~~~~~~l~~~~~~~~~~~~ii~~Dal~~d 108 (284) ..|+.+|=-|.+.| ++.+.|++.++ +|+.+.+|+.-.+.+.+.+.....++..+.+|..+.+ T Consensus 29 l~GKvalITGas~GIG~a~A~~la~~Ga-~V~l~~r~~~~l~~~~~~l~~~g~~~~~~~~Dvt~~~ 93 (272) T 1yb1_A 29 VTGEIVLITGAGHGIGRLTAYEFAKLKS-KLVLWDINKHGLEETAAKCKGLGAKVHTFVVDCSNRE 93 (272) T ss_dssp CTTCEEEEETTTSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHHHHHTTCCEEEEECCTTCHH T ss_pred CCCCEEEEECCCCHHHHHHHHHHHHCCC-EEEEEECCHHHHHHHHHHHHHCCCCEEEEEEECCCHH T ss_conf 9998899938576999999999998799-8999989999999999999854993899997279989 No 275 >2jah_A Clavulanic acid dehydrogenase; short-chain dehydrogenase/reductase, lactamase inhibitor, antibiotic biosynthesis, NADPH; HET: MSE NDP; 1.80A {Streptomyces clavuligerus} PDB: 2jap_A* Probab=64.51 E-value=7.1 Score=18.21 Aligned_cols=63 Identities=19% Similarity=0.282 Sum_probs=45.5 Q ss_pred CCCCCEEEEECCCCC---HHHHHHHHCCCCEEEEECCCCCCHHHHHHHHHHHHCCCCCCHHHHCCCC Q ss_conf 899987999758988---2346775023525998425543036887875322001220000000143 Q gi|254780398|r 45 SLDGITVIEIGAGPG---NLTQMLLTLGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVD 108 (284) Q Consensus 45 ~~~~~~VlEIGpG~G---~LT~~Ll~~~~~~v~aiEiD~~~~~~l~~~~~~~~~~~~ii~~Dal~~d 108 (284) ..+|+.+|=-|.+.| ++.+.+++.++ +|+...+|+.-.+.+.+.+.....++..+.+|+.+.+ T Consensus 4 ~L~gKvalITGas~GIG~aiA~~la~~Ga-~V~~~~r~~~~l~~~~~~l~~~g~~~~~~~~Dvs~~~ 69 (247) T 2jah_A 4 ALQGKVALITGASSGIGEATARALAAEGA-AVAIAARRVEKLRALGDELTAAGAKVHVLELDVADRQ 69 (247) T ss_dssp TTTTCEEEEESCSSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHHHHHTTCCEEEEECCTTCHH T ss_pred CCCCCEEEEECCCCHHHHHHHHHHHHCCC-EEEEEECCHHHHHHHHHHHHHCCCCEEEEEEECCCHH T ss_conf 65989899938787899999999998799-8999989899999999999854993899991089999 No 276 >3c85_A Putative glutathione-regulated potassium-efflux system protein KEFB; TRKA domain; HET: AMP; 1.90A {Vibrio parahaemolyticus rimd 2210633} Probab=63.88 E-value=7.3 Score=18.13 Aligned_cols=85 Identities=16% Similarity=0.220 Sum_probs=52.0 Q ss_pred CCEEEEECCCC-C-HHHHHHHHCCCCEEEEECCCCCCHHHHHHHHHHHHCCCCCCHHHHCCCCHH-HHCCCCCCEEEEEC Q ss_conf 98799975898-8-234677502352599842554303688787532200122000000014315-52133222011202 Q gi|254780398|r 48 GITVIEIGAGP-G-NLTQMLLTLGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFE-KFFNISSPIRIIAN 124 (284) Q Consensus 48 ~~~VlEIGpG~-G-~LT~~Ll~~~~~~v~aiEiD~~~~~~l~~~~~~~~~~~~ii~~Dal~~d~~-~~~~~~~~~~vvgN 124 (284) +..|+=+|.|. | .+.+.|...+...+++||.|+..++.+++. + +.++.||+.+.+.- +....+..-.||.. T Consensus 39 ~~hviI~G~GrvG~~ia~~L~~~~~~~~vviD~d~~~v~~l~~~-----g-~~~v~gD~~d~~~L~~a~~~~~a~~vi~~ 112 (183) T 3c85_A 39 HAQVLILGMGRIGTGAYDELRARYGKISLGIEIREEAAQQHRSE-----G-RNVISGDATDPDFWERILDTGHVKLVLLA 112 (183) T ss_dssp TCSEEEECCSHHHHHHHHHHHHHHCSCEEEEESCHHHHHHHHHT-----T-CCEEECCTTCHHHHHTBCSCCCCCEEEEC T ss_pred CCCEEEECCCHHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHCC-----C-CEEEECCCCCHHHHHHHCCCCCCCEEEEC T ss_conf 99789989888999999999984898699993881887886304-----6-13898689999999971496767499981 Q ss_pred CCHHHHHHHHHHHH Q ss_conf 32246788999998 Q gi|254780398|r 125 LPYNIGTRLLFNWI 138 (284) Q Consensus 125 LPYnIss~Il~~ll 138 (284) .|..-++-.+...+ T Consensus 113 ~~~~~~n~~~~~~~ 126 (183) T 3c85_A 113 MPHHQGNQTALEQL 126 (183) T ss_dssp CSSHHHHHHHHHHH T ss_pred CCCHHHHHHHHHHH T ss_conf 68407999999999 No 277 >2b9w_A Putative aminooxidase; isomerase, conjugated linoleic acid, FAD; HET: FAD 12P; 1.95A {Propionibacterium acnes} PDB: 2b9x_A* 2b9y_A* 2ba9_A* 2bab_A* 2bac_A* Probab=63.11 E-value=5.2 Score=19.04 Aligned_cols=38 Identities=24% Similarity=0.364 Sum_probs=26.6 Q ss_pred CCCCCEEEEECCCCCHHHHH--HHHCCCCEEEEECCCCCC Q ss_conf 89998799975898823467--750235259984255430 Q gi|254780398|r 45 SLDGITVIEIGAGPGNLTQM--LLTLGARKVIVIEKDQQF 82 (284) Q Consensus 45 ~~~~~~VlEIGpG~G~LT~~--Ll~~~~~~v~aiEiD~~~ 82 (284) ..++..|+=||+|...||-+ |.+.+.+.|+.+|...+. T Consensus 3 ~~~~~~V~IIGaG~aGLsaA~~L~~~G~~~V~vlE~~~~~ 42 (424) T 2b9w_A 3 ISKDSRIAIIGAGPAGLAAGMYLEQAGFHDYTILERTDHV 42 (424) T ss_dssp CCTTCCEEEECCSHHHHHHHHHHHHTTCCCEEEECSSSCS T ss_pred CCCCCCEEEECCCHHHHHHHHHHHHCCCCCEEEEECCCCC T ss_conf 9999979998988899999999985599978999469987 No 278 >3ftp_A 3-oxoacyl-[acyl-carrier protein] reductase; ssgcid, 3-ketoacyl-(acyl-carrier- protein) reductase, oxidoreductase, structural genomics; 2.05A {Burkholderia pseudomallei} Probab=63.01 E-value=6.8 Score=18.33 Aligned_cols=62 Identities=19% Similarity=0.020 Sum_probs=44.9 Q ss_pred CCCCEEEEECCCCC---HHHHHHHHCCCCEEEEECCCCCCHHHHHHHHHHHHCCCCCCHHHHCCCC Q ss_conf 99987999758988---2346775023525998425543036887875322001220000000143 Q gi|254780398|r 46 LDGITVIEIGAGPG---NLTQMLLTLGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVD 108 (284) Q Consensus 46 ~~~~~VlEIGpG~G---~LT~~Ll~~~~~~v~aiEiD~~~~~~l~~~~~~~~~~~~ii~~Dal~~d 108 (284) .+++.+|=.|.+.| ++.+.|++.++ +|+.+.+++.-.+.+.+.+.....++..+.+|+.+.+ T Consensus 26 L~gKvalITGas~GIG~aiA~~la~~Ga-~Vv~~~r~~~~l~~~~~~i~~~g~~~~~~~~Dvs~~~ 90 (270) T 3ftp_A 26 LDKQVAIVTGASRGIGRAIALELARRGA-MVIGTATTEAGAEGIGAAFKQAGLEGRGAVLNVNDAT 90 (270) T ss_dssp TTTCEEEETTCSSHHHHHHHHHHHHTTC-EEEEEESSHHHHHHHHHHHHHHTCCCEEEECCTTCHH T ss_pred CCCCEEEEECCCCHHHHHHHHHHHHCCC-EEEEEECCHHHHHHHHHHHHHCCCCEEEEEEECCCHH T ss_conf 7999899938685899999999998699-9999979889999999999965994699997369999 No 279 >2hmt_A YUAA protein; RCK, KTN, KTR, KTRA, ktrab, membrane protein, ION transporter, symporter, transport protein; HET: NAI; 2.20A {Bacillus subtilis} SCOP: c.2.1.9 PDB: 2hms_A* 2hmu_A* 2hmv_A* 2hmw_A* 1lsu_A* Probab=62.75 E-value=6.6 Score=18.43 Aligned_cols=84 Identities=14% Similarity=0.152 Sum_probs=48.4 Q ss_pred CCEEEEECCCCC--HHHHHHHHCCCCEEEEECCCCCCHHHHHHHHHHHHCCCCCCHHHHCCCCHHHHCCCCCCEEEEECC Q ss_conf 987999758988--234677502352599842554303688787532200122000000014315521332220112023 Q gi|254780398|r 48 GITVIEIGAGPG--NLTQMLLTLGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANL 125 (284) Q Consensus 48 ~~~VlEIGpG~G--~LT~~Ll~~~~~~v~aiEiD~~~~~~l~~~~~~~~~~~~ii~~Dal~~d~~~~~~~~~~~~vvgNL 125 (284) +..++=+|.|.- .+.+.|.+.+. +|+++|.|+..++.+++. + ..++.||+.+-+.-.-......-.||.-+ T Consensus 6 ~~~~iIiG~G~~G~~la~~L~~~g~-~vvviD~d~~~~~~~~~~-----g-~~~v~gD~td~~~L~~a~i~~a~~vii~~ 78 (144) T 2hmt_A 6 NKQFAVIGLGRFGGSIVKELHRMGH-EVLAVDINEEKVNAYASY-----A-THAVIANATEENELLSLGIRNFEYVIVAI 78 (144) T ss_dssp CCSEEEECCSHHHHHHHHHHHHTTC-CCEEEESCHHHHHTTTTT-----C-SEEEECCTTCHHHHHTTTGGGCSEEEECC T ss_pred CCEEEEECCCHHHHHHHHHHHHCCC-EEEEEECCHHHHHHHHHC-----C-CEEEEECCCCHHHHHHCCCCCCCEEEEEE T ss_conf 7839998878999999999998899-199997967999999853-----9-74999317888888630223499999981 Q ss_pred CHHHHHHHHHHHH Q ss_conf 2246788999998 Q gi|254780398|r 126 PYNIGTRLLFNWI 138 (284) Q Consensus 126 PYnIss~Il~~ll 138 (284) |-...+.++..+. T Consensus 79 ~~d~~~~~~~~~~ 91 (144) T 2hmt_A 79 GANIQASTLTTLL 91 (144) T ss_dssp CSCHHHHHHHHHH T ss_pred CCCHHHHHHHHHH T ss_conf 8868999999999 No 280 >2qq5_A DHRS1, dehydrogenase/reductase SDR family member 1; short-chain, structural genomics consortium, SGC, oxidoreductase; 1.80A {Homo sapiens} Probab=61.44 E-value=8.1 Score=17.86 Aligned_cols=63 Identities=14% Similarity=0.224 Sum_probs=44.4 Q ss_pred CCCCCEEEEECCCCC---HHHHHHHHCCCCEEEEECCCCCCHHHHHHHHHHHHCCCCCCHHHHCCCC Q ss_conf 899987999758988---2346775023525998425543036887875322001220000000143 Q gi|254780398|r 45 SLDGITVIEIGAGPG---NLTQMLLTLGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVD 108 (284) Q Consensus 45 ~~~~~~VlEIGpG~G---~LT~~Ll~~~~~~v~aiEiD~~~~~~l~~~~~~~~~~~~ii~~Dal~~d 108 (284) +..|+.+|=-|.+.| ++.+.+++.++ +|+...++..-++.+.+......++...+.+|..+.+ T Consensus 2 pL~GKv~lITG~s~GIG~aia~~la~~Ga-~V~i~~r~~~~l~~~~~~i~~~~~~~~~~~~D~~~~~ 67 (260) T 2qq5_A 2 PMNGQVCVVTGASRGIGRGIALQLCKAGA-TVYITGRHLDTLRVVAQEAQSLGGQCVPVVCDSSQES 67 (260) T ss_dssp TTTTCEEEESSTTSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHHHHHHSSEEEEEECCTTSHH T ss_pred CCCCCEEEEECCCCHHHHHHHHHHHHCCC-EEEEEECCHHHHHHHHHHHHHCCCCEEEEECCCCCHH T ss_conf 99998899958586999999999998799-8999979889999999999964993899976789999 No 281 >2jae_A L-amino acid oxidase; oxidoreductase, dimerisation mode, hydride transfer mechanism, GR2-family, flavoenzyme, FAD containing; HET: FAD; 1.25A {Rhodococcus opacus} PDB: 2jb1_A* 2jb2_A* 2jb3_A* Probab=61.08 E-value=7.5 Score=18.06 Aligned_cols=37 Identities=30% Similarity=0.424 Sum_probs=27.5 Q ss_pred CCCCCEEEEECCCCCHHHH--HHHHCCCCEEEEECCCCCC Q ss_conf 8999879997589882346--7750235259984255430 Q gi|254780398|r 45 SLDGITVIEIGAGPGNLTQ--MLLTLGARKVIVIEKDQQF 82 (284) Q Consensus 45 ~~~~~~VlEIGpG~G~LT~--~Ll~~~~~~v~aiEiD~~~ 82 (284) ......|+=||+|.+.||- .|.+++ .+|+.+|...+. T Consensus 8 ~~~~~dVvIIGaG~aGL~aA~~L~~~G-~~V~vlEa~~~~ 46 (489) T 2jae_A 8 VKGSHSVVVLGGGPAGLCSAFELQKAG-YKVTVLEARTRP 46 (489) T ss_dssp CCSCCEEEEECCSHHHHHHHHHHHHTT-CEEEEECSSSSS T ss_pred CCCCCCEEEECCCHHHHHHHHHHHHCC-CCEEEEECCCCC T ss_conf 899996799897889999999998589-999999189978 No 282 >2bi7_A UDP-galactopyranose mutase; FAD, flavoprotein, isomerase, lipopolysaccharide biosynthesis; HET: FAD; 2.0A {Klebsiella pneumoniae} SCOP: c.4.1.3 d.16.1.7 PDB: 2bi8_A* 1wam_A* 3inr_A* 3gf4_A* 3int_A* Probab=60.50 E-value=6.6 Score=18.42 Aligned_cols=40 Identities=18% Similarity=0.185 Sum_probs=29.9 Q ss_pred CCCEEEEECCCCCHHHHH--HHHCCCCEEEEECCCCCCHHHHH Q ss_conf 998799975898823467--75023525998425543036887 Q gi|254780398|r 47 DGITVIEIGAGPGNLTQM--LLTLGARKVIVIEKDQQFFPILK 87 (284) Q Consensus 47 ~~~~VlEIGpG~G~LT~~--Ll~~~~~~v~aiEiD~~~~~~l~ 87 (284) +...|+=||+|+..||-+ |.+++ .+|+.+|.+.+.-..+. T Consensus 2 k~kki~IIGaG~sGL~~A~~L~k~g-~~V~v~Ek~~~~GG~~~ 43 (384) T 2bi7_A 2 KSKKILIVGAGFSGAVIGRQLAEKG-HQVHIIDQRDHIGGNSY 43 (384) T ss_dssp CCCEEEEECCSHHHHHHHHHHHTTT-CEEEEEESSSSSSGGGC T ss_pred CCCCEEEECCCHHHHHHHHHHHHCC-CCEEEEECCCCCCCCEE T ss_conf 8686999896199999999998489-95799978898777225 No 283 >3nzo_A UDP-N-acetylglucosamine 4,6-dehydratase; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG, NAD; HET: MSE NAD; 2.10A {Vibrio fischeri} Probab=60.46 E-value=8.4 Score=17.75 Aligned_cols=61 Identities=13% Similarity=0.223 Sum_probs=37.3 Q ss_pred CCCEEEEECCCCCHH----HHHHHHCCCCEEEEECCCCCCHHHH-HH---HHHHHHCCCCCCHHHHCCCC Q ss_conf 998799975898823----4677502352599842554303688-78---75322001220000000143 Q gi|254780398|r 47 DGITVIEIGAGPGNL----TQMLLTLGARKVIVIEKDQQFFPIL-KD---ISSQHPNRLEIIQDDALKVD 108 (284) Q Consensus 47 ~~~~VlEIGpG~G~L----T~~Ll~~~~~~v~aiEiD~~~~~~l-~~---~~~~~~~~~~ii~~Dal~~d 108 (284) .+..||=-|+ .|.+ ++.|++.+++.|+++++|+.-.-.+ ++ ........+..+.+|....+ T Consensus 34 ~~KkILVTGg-~GfIGS~Lv~~Ll~~~~~~iii~d~~e~~l~~i~~~l~~~~~~~~~~~~~~~~di~d~~ 102 (399) T 3nzo_A 34 SQSRFLVLGG-AGSIGQAVTKEIFKRNPQKLHVVDISENNMVELVRDIRSSFGYINGDFQTFALDIGSIE 102 (399) T ss_dssp HTCEEEEETT-TSHHHHHHHHHHHTTCCSEEEEECSCHHHHHHHHHHHHHHTCCCSSEEEEECCCTTSHH T ss_pred CCCEEEEECC-CCHHHHHHHHHHHHCCCCEEEEEECCCHHHHHHHHHHHHHHHHCCCCCCEEEEECCCHH T ss_conf 8599999789-88899999999996599989999698167899999998753202667404554414468 No 284 >2ae2_A Protein (tropinone reductase-II); oxidoreductase, tropane alkaloid biosynthesis, reduction of tropinone to pseudotropine; HET: NAP PTO; 1.90A {Datura stramonium} SCOP: c.2.1.2 PDB: 2ae1_A* 1ipe_A* 1ipf_A* Probab=59.41 E-value=8.8 Score=17.64 Aligned_cols=62 Identities=21% Similarity=0.221 Sum_probs=44.5 Q ss_pred CCCCEEEEECCCCC---HHHHHHHHCCCCEEEEECCCCCCHHHHHHHHHHHHCCCCCCHHHHCCCC Q ss_conf 99987999758988---2346775023525998425543036887875322001220000000143 Q gi|254780398|r 46 LDGITVIEIGAGPG---NLTQMLLTLGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVD 108 (284) Q Consensus 46 ~~~~~VlEIGpG~G---~LT~~Ll~~~~~~v~aiEiD~~~~~~l~~~~~~~~~~~~ii~~Dal~~d 108 (284) .+++.+|=-|.+.| ++.+.|++.++ +|+...+++.-.+.+.+.......++..+.+|+.+.+ T Consensus 7 L~GK~alVTGas~GIG~aia~~la~~Ga-~V~~~~r~~~~l~~~~~~~~~~g~~~~~~~~Dv~~~~ 71 (260) T 2ae2_A 7 LEGCTALVTGGSRGIGYGIVEELASLGA-SVYTCSRNQKELNDCLTQWRSKGFKVEASVCDLSSRS 71 (260) T ss_dssp CTTCEEEEESCSSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHHHHHTTCEEEEEECCTTCHH T ss_pred CCCCEEEEECCCCHHHHHHHHHHHHCCC-EEEEEECCHHHHHHHHHHHHHCCCCEEEEECCCCCHH T ss_conf 9999899948888899999999998699-9999969889999999998724982899987789999 No 285 >2plw_A Ribosomal RNA methyltransferase, putative; malaria, SAM, structural genomics, structural genomics consortium, SGC; HET: SAM; 1.70A {Plasmodium falciparum 3D7} Probab=59.33 E-value=7.4 Score=18.09 Aligned_cols=53 Identities=25% Similarity=0.327 Sum_probs=33.3 Q ss_pred CCCCEEEEECCCCCHHHHHHHHCCCC---EEEEECCCCCCHHHHHHHHHHHHCCCCCCHHHHCCCC Q ss_conf 99987999758988234677502352---5998425543036887875322001220000000143 Q gi|254780398|r 46 LDGITVIEIGAGPGNLTQMLLTLGAR---KVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVD 108 (284) Q Consensus 46 ~~~~~VlEIGpG~G~LT~~Ll~~~~~---~v~aiEiD~~~~~~l~~~~~~~~~~~~ii~~Dal~~d 108 (284) .++..|+++|++||+-+..+.++... .+.++...+. .. ..++..+.||+.+.. T Consensus 21 ~~~~~vvDLg~aPGgw~q~~~~~~~~~~~~~~~~~~~~~---------~~-~~~~~~~~gd~~~~~ 76 (201) T 2plw_A 21 KKNKIILDIGCYPGSWCQVILERTKNYKNKIIGIDKKIM---------DP-IPNVYFIQGEIGKDN 76 (201) T ss_dssp CTTEEEEEESCTTCHHHHHHHHHTTTSCEEEEEEESSCC---------CC-CTTCEEEECCTTTTS T ss_pred CCCCEEEEECCCCCHHHHHHHHHHCCCCCCEEECCCCCC---------CC-CCCCEEEEECCCCHH T ss_conf 799879994789977999999984178883786134333---------34-789738960365403 No 286 >1o94_A Tmadh, trimethylamine dehydrogenase; electron transport, protein complex; HET: FMN ADP AMP; 2.0A {Methylophilus methylotrophus} SCOP: c.1.4.1 c.3.1.1 c.4.1.1 PDB: 1djn_A* 1o95_A* 2tmd_A* 1djq_A* Probab=58.79 E-value=7.6 Score=18.03 Aligned_cols=36 Identities=22% Similarity=0.386 Sum_probs=28.2 Q ss_pred CCCEEEEECCCCCHHHH--HHHHCCCCEEEEECCCCCCH Q ss_conf 99879997589882346--77502352599842554303 Q gi|254780398|r 47 DGITVIEIGAGPGNLTQ--MLLTLGARKVIVIEKDQQFF 83 (284) Q Consensus 47 ~~~~VlEIGpG~G~LT~--~Ll~~~~~~v~aiEiD~~~~ 83 (284) .+..|+=||.|++.|+- .+++++. +|+.+|..+++- T Consensus 388 ~~kkV~VIGaGPAGL~AA~~la~~G~-~VtL~Ek~~~lG 425 (729) T 1o94_A 388 NKDSVLIVGAGPSGSEAARVLMESGY-TVHLTDTAEKIG 425 (729) T ss_dssp SCCEEEEECCSHHHHHHHHHHHHTTC-EEEEECSSSSTT T ss_pred CCCEEEEECCCHHHHHHHHHHHHCCC-CEEEEEECCCCC T ss_conf 68779998736779999999973799-389996237776 No 287 >1zem_A Xylitol dehydrogenase; rossmann fold, dinucleotide-binding domain, oxidoreductase; HET: NAD; 1.90A {Gluconobacter oxydans} SCOP: c.2.1.2 Probab=58.23 E-value=9.2 Score=17.52 Aligned_cols=62 Identities=11% Similarity=0.142 Sum_probs=44.9 Q ss_pred CCCCEEEEECCCCCH---HHHHHHHCCCCEEEEECCCCCCHHHHHHHHHHHHCCCCCCHHHHCCCC Q ss_conf 999879997589882---346775023525998425543036887875322001220000000143 Q gi|254780398|r 46 LDGITVIEIGAGPGN---LTQMLLTLGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVD 108 (284) Q Consensus 46 ~~~~~VlEIGpG~G~---LT~~Ll~~~~~~v~aiEiD~~~~~~l~~~~~~~~~~~~ii~~Dal~~d 108 (284) .+++.+|=.|.+.|. +.+.|++.++ +|+.+.+|+.-.+.+.+.......++..+.+|+.+.+ T Consensus 5 l~gKvalITGas~GIG~aia~~la~~Ga-~V~~~~r~~~~l~~~~~~l~~~g~~~~~~~~Dv~~~~ 69 (262) T 1zem_A 5 FNGKVCLVTGAGGNIGLATALRLAEEGT-AIALLDMNREALEKAEASVREKGVEARSYVCDVTSEE 69 (262) T ss_dssp TTTCEEEEETTTSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHHHHTTTSCEEEEECCTTCHH T ss_pred CCCCEEEEECCCCHHHHHHHHHHHHCCC-EEEEEECCHHHHHHHHHHHHHCCCCEEEEECCCCCHH T ss_conf 2839899938787899999999998799-8999989989999999999852993899982389999 No 288 >3gdg_A Probable NADP-dependent mannitol dehydrogenase; rossmann fold, beta-alpha-beta motifs, open twisted sheet, A NADP, oxidoreductase; 2.30A {Cladosporium herbarum} PDB: 3gdf_A Probab=57.69 E-value=9.4 Score=17.46 Aligned_cols=77 Identities=16% Similarity=0.175 Sum_probs=48.4 Q ss_pred CCCCCCCHHHHHHHHHHCCCCCCCEEEEECCC--CC---HHHHHHHHCCCCEEEEECCCC--CCHHHHHHHHHHHHCCCC Q ss_conf 84112398999999997198999879997589--88---234677502352599842554--303688787532200122 Q gi|254780398|r 26 GQNFLLDLNILKKIAESSGSLDGITVIEIGAG--PG---NLTQMLLTLGARKVIVIEKDQ--QFFPILKDISSQHPNRLE 98 (284) Q Consensus 26 GQnFL~d~~i~~~iv~~~~~~~~~~VlEIGpG--~G---~LT~~Ll~~~~~~v~aiEiD~--~~~~~l~~~~~~~~~~~~ 98 (284) ||.....+.+.+++ ++ +++.+|=-|++ .| ++.+.+++.++ +|+....+. .+.+.+++.......++. T Consensus 3 ~~~~~~~~~~~~~~----~L-~gKvalVTGAsG~~GIG~aia~~la~~Ga-~V~i~~~~~~~~~~~~~~~l~~~~g~~~~ 76 (267) T 3gdg_A 3 GQQATKHESLLDQL----SL-KGKVVVVTGASGPKGMGIEAARGCAEMGA-AVAITYASRAQGAEENVKELEKTYGIKAK 76 (267) T ss_dssp CCCCCSCSSHHHHH----CC-TTCEEEETTCCSSSSHHHHHHHHHHHTSC-EEEECBSSSSSHHHHHHHHHHHHHCCCEE T ss_pred CCCCCCCCCCCCCC----CC-CCCEEEEECCCCCCHHHHHHHHHHHHCCC-EEEEEECCCHHHHHHHHHHHHHHCCCCEE T ss_conf 87666552530225----98-99989995989997089999999998699-89998489457799999999985099579 Q ss_pred CCHHHHCCCC Q ss_conf 0000000143 Q gi|254780398|r 99 IIQDDALKVD 108 (284) Q Consensus 99 ii~~Dal~~d 108 (284) .+.+|+.+.+ T Consensus 77 ~~~~Dv~~~~ 86 (267) T 3gdg_A 77 AYKCQVDSYE 86 (267) T ss_dssp CCBCCTTCHH T ss_pred EEECCCCCHH T ss_conf 9981389999 No 289 >2vdc_G Glutamate synthase [NADPH] small chain; oxidoreductase, amidotransferase, ammonia assimilation, iron, zymogen; HET: OMT FMN AKG FAD; 9.50A {Azospirillum brasilense} Probab=56.26 E-value=9 Score=17.56 Aligned_cols=38 Identities=32% Similarity=0.428 Sum_probs=30.1 Q ss_pred CCCEEEEECCCCCHHH--HHHHHCCCCEEEEECCCCCCHHH Q ss_conf 9987999758988234--67750235259984255430368 Q gi|254780398|r 47 DGITVIEIGAGPGNLT--QMLLTLGARKVIVIEKDQQFFPI 85 (284) Q Consensus 47 ~~~~VlEIGpG~G~LT--~~Ll~~~~~~v~aiEiD~~~~~~ 85 (284) .+..|.=||.|++.|| ..|++++. +|+.+|..+..=.. T Consensus 121 ~~kkVAIIGaGPAGl~AA~~La~~G~-~VtvfE~~~~~GG~ 160 (456) T 2vdc_G 121 LGLSVGVIGAGPAGLAAAEELRAKGY-EVHVYDRYDRMGGL 160 (456) T ss_dssp CCCCEEEECCSHHHHHHHHHHHHHTC-CEEEECSSSSCSTH T ss_pred CCCEEEEECCCHHHHHHHHHHHHCCC-EEEEEEECCCCCCE T ss_conf 79879998978899999999985798-79999706755655 No 290 >1ps9_A 2,4-dienoyl-COA reductase; iron-sulfur, TIM barrel, flavodoxin, flavin, electron transfer, hydride transfer, oxidoreductase; HET: FAD FMN NAP MDE; 2.20A {Escherichia coli} SCOP: c.1.4.1 c.3.1.1 c.4.1.1 Probab=55.24 E-value=9.3 Score=17.48 Aligned_cols=38 Identities=18% Similarity=0.311 Sum_probs=28.4 Q ss_pred CCCCEEEEECCCCCHHHHH--HHHCCCCEEEEECCCCCCHH Q ss_conf 9998799975898823467--75023525998425543036 Q gi|254780398|r 46 LDGITVIEIGAGPGNLTQM--LLTLGARKVIVIEKDQQFFP 84 (284) Q Consensus 46 ~~~~~VlEIGpG~G~LT~~--Ll~~~~~~v~aiEiD~~~~~ 84 (284) .....|+=||.|++.||-+ +++++. +|+.+|..+++-. T Consensus 371 ~~~kkVvVIGaGPAGl~AA~~lA~~G~-~Vtl~Ek~~~lGG 410 (671) T 1ps9_A 371 VQKKNLAVVGAGPAGLAFAINAAARGH-QVTLFDAHSEIGG 410 (671) T ss_dssp SSCCEEEEECCSHHHHHHHHHHHTTTC-EEEEEESSSSSCT T ss_pred CCCCEEEEECCCHHHHHHHHHHHHHHC-CCEEEEECCCCCC T ss_conf 656279997843888999999987525-6407830566775 No 291 >3hdq_A UDP-galactopyranose mutase; substrate and inhibitor, isomerase; HET: GDU FAD; 2.36A {Deinococcus radiodurans} PDB: 3hdy_A* 3he3_A* Probab=54.79 E-value=8.6 Score=17.70 Aligned_cols=43 Identities=19% Similarity=0.319 Sum_probs=31.0 Q ss_pred CCCCCEEEEECCCCCHHHHH--HHHCCCCEEEEECCCCCCHHHHHH Q ss_conf 89998799975898823467--750235259984255430368878 Q gi|254780398|r 45 SLDGITVIEIGAGPGNLTQM--LLTLGARKVIVIEKDQQFFPILKD 88 (284) Q Consensus 45 ~~~~~~VlEIGpG~G~LT~~--Ll~~~~~~v~aiEiD~~~~~~l~~ 88 (284) ..++-.|+=||+|+..||-+ |.+++ ..|+.+|.+.+.=...+. T Consensus 26 ~~~~yDviIIGaG~sGL~aA~~L~k~G-~~V~v~Ek~~~iGG~~~t 70 (397) T 3hdq_A 26 ESKGFDYLIVGAGFAGSVLAERLASSG-QRVLIVDRRPHIGGNAYD 70 (397) T ss_dssp CCCCEEEEEECCSHHHHHHHHHHHHTT-CCEEEECSSSSSSGGGCC T ss_pred CCCCCCEEEECCCHHHHHHHHHHHHCC-CCEEEEECCCCCCCEEEE T ss_conf 068899899897189999999998589-967999768977060789 No 292 >3iht_A S-adenosyl-L-methionine methyl transferase; YP_165822.1, structural genomics, joint center for structural genomics, JCSG; HET: MSE SAM; 1.80A {Ruegeria pomeroyi dss-3} Probab=54.19 E-value=11 Score=17.10 Aligned_cols=66 Identities=24% Similarity=0.380 Sum_probs=42.1 Q ss_pred HHHHHHHHCCCCCCCEEEEECCCCCHHHHHHHHCCC-CEEEEECCCCCCHHHHHHHHHHHHCCCCCCHHHHCCC Q ss_conf 999999971989998799975898823467750235-2599842554303688787532200122000000014 Q gi|254780398|r 35 ILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGA-RKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKV 107 (284) Q Consensus 35 i~~~iv~~~~~~~~~~VlEIGpG~G~LT~~Ll~~~~-~~v~aiEiD~~~~~~l~~~~~~~~~~~~ii~~Dal~~ 107 (284) +++..++.+...+| .|+|+|.+.|.-...|.+.-+ +.|++.+-=..+.+ ...+++++++.||+-+. T Consensus 29 ~l~~a~~~~~~~~G-~vlE~Gv~~G~s~~~l~~~l~~r~i~gFDtF~g~~~------~~~~~~~~lv~G~~~eT 95 (174) T 3iht_A 29 CLEHAIAQTAGLSG-PVYELGLGNGRTYHHLRQHVQGREIYVFERAVASHP------DSTPPEAQLILGDIRET 95 (174) T ss_dssp HHHHHHHHTTTCCS-CEEEECCTTCHHHHHHHHHCCSSCEEEEESSCCCCG------GGCCCGGGEEESCHHHH T ss_pred HHHHHHHHHCCCCC-CEEEEECCCCHHHHHHHHHCCCCEEEEEEECCCCCC------CCCCCCCEEEEECCHHH T ss_conf 99999986268998-689984147644999998779986999976357899------89999747983071777 No 293 >3im8_A Malonyl acyl carrier protein transacylase; fatty acid synthesis, malonyl-COA, acyl carrier protein TRAN (MCAT), FABD, acyltransferase; 2.10A {Streptococcus pneumoniae} Probab=53.91 E-value=10 Score=17.25 Aligned_cols=26 Identities=23% Similarity=0.348 Sum_probs=14.3 Q ss_pred HHCCCCCCCEEEEECCCCCHHHHHHHHCCC Q ss_conf 971989998799975898823467750235 Q gi|254780398|r 41 ESSGSLDGITVIEIGAGPGNLTQMLLTLGA 70 (284) Q Consensus 41 ~~~~~~~~~~VlEIGpG~G~LT~~Ll~~~~ 70 (284) +..++.+ +.+ +|-..|-+|-. ...++ T Consensus 77 ~~~Gi~P-~~v--~GhSlGE~aA~-~~aG~ 102 (307) T 3im8_A 77 QEKGYQP-DMV--AGLSLGEYSAL-VASGA 102 (307) T ss_dssp HHTTCCC-SEE--EESTTHHHHHH-HHTTS T ss_pred HHCCCCC-CEE--ECCCHHHHHHH-HHCCC T ss_conf 9749987-488--11774189998-61899 No 294 >2oo3_A Protein involved in catabolism of external DNA; structural genomics, unknown function, PSI-2, protein structure initiative; 2.00A {Legionella pneumophila subsp} SCOP: c.66.1.59 Probab=53.66 E-value=4.5 Score=19.42 Aligned_cols=120 Identities=8% Similarity=0.002 Sum_probs=75.3 Q ss_pred HHHHHCCCCCCCEEEEECCCCCHHHHHHHHCCCCEEEEECCCCCCHHHHHHHHHHHHCCCCCCHHHHCCCCHHHHCCCCC Q ss_conf 99997198999879997589882346775023525998425543036887875322001220000000143155213322 Q gi|254780398|r 38 KIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISS 117 (284) Q Consensus 38 ~iv~~~~~~~~~~VlEIGpG~G~LT~~Ll~~~~~~v~aiEiD~~~~~~l~~~~~~~~~~~~ii~~Dal~~d~~~~~~~~~ 117 (284) .+++..+...+ +..=||--.+...+++.. .+++++|.-+.-++.|++.+...+ ++.+.+.|..+--..-+.+.+. T Consensus 85 ~~v~~~n~~~~---l~~YPGSP~ia~~llR~q-Drl~l~ELHp~d~~~L~~~~~~~~-~~~v~~~DG~~~l~allPP~er 159 (283) T 2oo3_A 85 SVIKQINLNST---LSYYPGSPYFAINQLRSQ-DRLYLCELHPTEYNFLLKLPHFNK-KVYVNHTDGVSKLNALLPPPEK 159 (283) T ss_dssp HHHHHHSSSSS---CCEEECHHHHHHHHSCTT-SEEEEECCSHHHHHHHTTSCCTTS-CEEEECSCHHHHHHHHCSCTTS T ss_pred HHHHHHCCCCC---CCCCCCCHHHHHHHCCCC-CEEEEEECCHHHHHHHHHHHCCCC-CCEEEECCHHHHHHHHCCCCCC T ss_conf 99998668999---787898899999858956-749998468789999998725387-7569816578899866799878 Q ss_pred CEEEEECCCHHHHHHH--HHHHHHHHCCCCCCCHHHHEE-----EHHHHHHHHH Q ss_conf 2011202322467889--999985201000000110203-----3447887530 Q gi|254780398|r 118 PIRIIANLPYNIGTRL--LFNWISADTWPPFWESLTLLF-----QKEVGERITA 164 (284) Q Consensus 118 ~~~vvgNLPYnIss~I--l~~ll~~~~~~~~~~~~vlmv-----QkEvA~Rl~a 164 (284) .--|.=--||-+.+.. +...+.... ..|...++++ +.+-.+++.. T Consensus 160 RgLVLIDPpYE~k~Ey~~v~~~l~~a~--kR~~~G~~~iWYPi~~~~~~~~~~~ 211 (283) T 2oo3_A 160 RGLIFIDPSYERKEEYKEIPYAIKNAY--SKFSTGLYCVWYPVVNKAWTEQFLR 211 (283) T ss_dssp CEEEEECCCCCSTTHHHHHHHHHHHHH--HHCTTSEEEEEEEESSHHHHHHHHH T ss_pred CEEEEECCCCCCHHHHHHHHHHHHHHH--HHCCCCEEEEEEECCCHHHHHHHHH T ss_conf 668995798665438999999999999--8666865999820456088899999 No 295 >2ku7_A MLL1 PHD3-CYP33 RRM chimeric protein; transcriptional regulation, RRM domain, transcr; NMR {Homo sapiens} Probab=53.13 E-value=6.2 Score=18.59 Aligned_cols=24 Identities=8% Similarity=0.184 Sum_probs=19.6 Q ss_pred CCEEEEECCCHHHHHHHHHHHHHH Q ss_conf 220112023224678899999852 Q gi|254780398|r 117 SPIRIIANLPYNIGTRLLFNWISA 140 (284) Q Consensus 117 ~~~~vvgNLPYnIss~Il~~ll~~ 140 (284) .....|||||++++..-|..+++. T Consensus 63 krtLfVgNLp~~vte~~L~~~F~~ 86 (140) T 2ku7_A 63 KRVLYVGGLAEEVDDKVLHAAFIP 86 (140) T ss_dssp CCEEEEECCCTTCCHHHHHHHHGG T ss_pred CCEEEECCCCCCCCHHHHHHHHHH T ss_conf 779999298983869999999972 No 296 >2b4q_A Rhamnolipids biosynthesis 3-oxoacyl-[acyl- carrier-protein] reductase; RHLG-NADP complex, oxidoreductase; HET: NAP; 2.30A {Pseudomonas aeruginosa} Probab=52.88 E-value=11 Score=16.97 Aligned_cols=61 Identities=23% Similarity=0.244 Sum_probs=45.1 Q ss_pred CCCCEEEEECCCCC---HHHHHHHHCCCCEEEEECCCCCCHHHHHHHHHHHHCCCCCCHHHHCCCC Q ss_conf 99987999758988---2346775023525998425543036887875322001220000000143 Q gi|254780398|r 46 LDGITVIEIGAGPG---NLTQMLLTLGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVD 108 (284) Q Consensus 46 ~~~~~VlEIGpG~G---~LT~~Ll~~~~~~v~aiEiD~~~~~~l~~~~~~~~~~~~ii~~Dal~~d 108 (284) .+++.+|=.|.+.| ++.+.|++.++ +|+.+.+|..-.+.+.+..... +++..+.+|+.+.+ T Consensus 27 L~gKvalVTGas~GIG~aia~~la~~Ga-~V~i~~r~~~~l~~~~~~l~~~-g~~~~~~~Dv~~~~ 90 (276) T 2b4q_A 27 LAGRIALVTGGSRGIGQMIAQGLLEAGA-RVFICARDAEACADTATRLSAY-GDCQAIPADLSSEA 90 (276) T ss_dssp CTTCEEEEETTTSHHHHHHHHHHHHTTC-EEEEECSCHHHHHHHHHHHTTS-SCEEECCCCTTSHH T ss_pred CCCCEEEEECCCCHHHHHHHHHHHHCCC-EEEEEECCHHHHHHHHHHHHCC-CCEEEEEECCCCHH T ss_conf 9998799928887899999999998699-8999979889999999997504-98799990289999 No 297 >1rjd_A PPM1P, carboxy methyl transferase for protein phosphatase 2A catalytic subunit; SAM dependent methyltransferase; HET: SAM; 1.80A {Saccharomyces cerevisiae} SCOP: c.66.1.37 PDB: 1rje_A* 1rjf_A 1rjg_A* 2ob2_A* 2ob1_A Probab=52.51 E-value=11 Score=16.94 Aligned_cols=41 Identities=20% Similarity=0.256 Sum_probs=30.5 Q ss_pred CCCEEEEECCCCCHHHHHHHHCCCCEEEEECCCCCCHHHHHH Q ss_conf 998799975898823467750235259984255430368878 Q gi|254780398|r 47 DGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKD 88 (284) Q Consensus 47 ~~~~VlEIGpG~G~LT~~Ll~~~~~~v~aiEiD~~~~~~l~~ 88 (284) +..-|+-+|+|.-..--.|....+ ++..+|+|-.-+-..|. T Consensus 97 ~~~QVV~LGaG~DTr~~Rl~~~~~-~v~~~EvD~P~v~~~K~ 137 (334) T 1rjd_A 97 EKVQVVNLGCGSDLRMLPLLQMFP-HLAYVDIDYNESVELKN 137 (334) T ss_dssp SSEEEEEETCTTCCTHHHHHHHCT-TEEEEEEECHHHHHHHH T ss_pred CCCEEEEECCCCCCHHHHHHCCCC-CCEEEECCCHHHHHHHH T ss_conf 982899958632446777425389-97799797578999999 No 298 >3ijr_A Oxidoreductase, short chain dehydrogenase/reductase family; structural genomics, infectious diseases; HET: NAD; 2.05A {Bacillus anthracis str} PDB: 3i3o_A* Probab=51.67 E-value=12 Score=16.85 Aligned_cols=63 Identities=16% Similarity=0.201 Sum_probs=44.7 Q ss_pred CCCCCEEEEECCCCC---HHHHHHHHCCCCEEEEECCCCC-CHHHHHHHHHHHHCCCCCCHHHHCCCC Q ss_conf 899987999758988---2346775023525998425543-036887875322001220000000143 Q gi|254780398|r 45 SLDGITVIEIGAGPG---NLTQMLLTLGARKVIVIEKDQQ-FFPILKDISSQHPNRLEIIQDDALKVD 108 (284) Q Consensus 45 ~~~~~~VlEIGpG~G---~LT~~Ll~~~~~~v~aiEiD~~-~~~~l~~~~~~~~~~~~ii~~Dal~~d 108 (284) ..+++.+|=-|.+.| ++.+.|++.++ +|+...+|.. ..+.+.+.......++..+.+|+.+.+ T Consensus 44 rL~gKvalITGas~GIG~aiA~~la~~Ga-~V~l~~r~~~~~~~~~~~~~~~~g~~~~~~~~Dvt~~~ 110 (291) T 3ijr_A 44 KLKGKNVLITGGDSGIGRAVSIAFAKEGA-NIAIAYLDEEGDANETKQYVEKEGVKCVLLPGDLSDEQ 110 (291) T ss_dssp TTTTCEEEEETTTSHHHHHHHHHHHHTTC-EEEEEESSCHHHHHHHHHHHHTTTCCEEEEESCTTSHH T ss_pred CCCCCEEEEECCCCHHHHHHHHHHHHCCC-EEEEEECCCHHHHHHHHHHHHHCCCCEEEEECCCCCHH T ss_conf 88989899938887899999999998799-89999798065799999999964992899977789999 No 299 >1fmc_A 7 alpha-hydroxysteroid dehydrogenase; short-chain dehydrogenase/reductase, bIle acid catabolism, oxidoreductase; HET: CHO NAD; 1.80A {Escherichia coli} SCOP: c.2.1.2 PDB: 1ahi_A* 1ahh_A* Probab=51.16 E-value=12 Score=16.80 Aligned_cols=113 Identities=17% Similarity=0.146 Sum_probs=63.8 Q ss_pred CCCCEEEEECCCCC---HHHHHHHHCCCCEEEEECCCCCCHHHHHHHHHHHHCCCCCCHHHHCCCCH-HHHC----CC-C Q ss_conf 99987999758988---23467750235259984255430368878753220012200000001431-5521----33-2 Q gi|254780398|r 46 LDGITVIEIGAGPG---NLTQMLLTLGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDF-EKFF----NI-S 116 (284) Q Consensus 46 ~~~~~VlEIGpG~G---~LT~~Ll~~~~~~v~aiEiD~~~~~~l~~~~~~~~~~~~ii~~Dal~~d~-~~~~----~~-~ 116 (284) .+++.+|=-|.+.| ++.+.+++.++ +|+...+++.-.+.+.+.......++..+.+|+.+.+- ..+. .. + T Consensus 9 L~gKvalITGas~GIG~aia~~la~~Ga-~V~i~~r~~~~~~~~~~~l~~~g~~~~~~~~Dv~~~~~v~~~~~~~~~~~G 87 (255) T 1fmc_A 9 LDGKCAIITGAGAGIGKEIAITFATAGA-SVVVSDINADAANHVVDEIQQLGGQAFACRCDITSEQELSALADFAISKLG 87 (255) T ss_dssp CTTCEEEETTTTSHHHHHHHHHHHTTTC-EEEEEESCHHHHHHHHHHHHHTTCCEEEEECCTTCHHHHHHHHHHHHHHHS T ss_pred CCCCEEEEECCCCHHHHHHHHHHHHCCC-EEEEEECCHHHHHHHHHHHHHCCCCEEEEEECCCCHHHHHHHHHHHHHHCC T ss_conf 9999899938975899999999998799-899997998999999999996399389999228999999999999999749 Q ss_pred CCEEEEEC------CCHHHHHHHHHHHHHHHCCCCCCCHHHHEEEHHHHHHHHHC Q ss_conf 22011202------32246788999998520100000011020334478875301 Q gi|254780398|r 117 SPIRIIAN------LPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQ 165 (284) Q Consensus 117 ~~~~vvgN------LPYnIss~Il~~ll~~~~~~~~~~~~vlmvQkEvA~Rl~a~ 165 (284) .--.+|-| -|+.++..-..+.+.-+. ...+.+-++++..|... T Consensus 88 ~iDiLVnnAG~~~~~~~~~~~~~~~~~~~vNl------~g~~~~~~~~~~~m~~~ 136 (255) T 1fmc_A 88 KVDILVNNAGGGGPKPFDMPMADFRRAYELNV------FSFFHLSQLVAPEMEKN 136 (255) T ss_dssp SCCEEEECCCCCCCCCTTCCHHHHHHHHHHHT------HHHHHHHHHHHHHHHHH T ss_pred CCCEEEECCCCCCCCCCCCCHHHHHHHHHHHH------HHHHHHHHHHHHHHHHC T ss_conf 99899989999999977599999999999986------89999999999999972 No 300 >1v0j_A UDP-galactopyranose mutase; flavoprotein, isomerase; HET: FAD BCN; 2.25A {Mycobacterium tuberculosis} Probab=50.16 E-value=7.9 Score=17.91 Aligned_cols=41 Identities=20% Similarity=0.195 Sum_probs=30.3 Q ss_pred CCEEEEECCCCCHHHHH--HHHCCCCEEEEECCCCCCHHHHHH Q ss_conf 98799975898823467--750235259984255430368878 Q gi|254780398|r 48 GITVIEIGAGPGNLTQM--LLTLGARKVIVIEKDQQFFPILKD 88 (284) Q Consensus 48 ~~~VlEIGpG~G~LT~~--Ll~~~~~~v~aiEiD~~~~~~l~~ 88 (284) .-.|+=||+|...||-+ |+++....|+.+|.+.++=..+.. T Consensus 7 k~dvvIIGaG~sGL~aA~~L~~~~g~~V~l~E~~~~~GG~~~t 49 (399) T 1v0j_A 7 RFDLFVVGSGFFGLTIAERVATQLDKRVLVLERRPHIGGNAYS 49 (399) T ss_dssp SCSEEEECCSHHHHHHHHHHHHHSCCCEEEECSSSSSSGGGCE T ss_pred CCCEEEECCHHHHHHHHHHHHHHCCCCEEEEECCCCCCCEEEE T ss_conf 8999999941999999999998689988999799977470316 No 301 >3ctm_A Carbonyl reductase; alcohol dehydrogenase, short-chain dehydrogenases/reductases (SDR), X-RAY crystallography, oxidoreductase; 2.69A {Candida parapsilosis} Probab=50.06 E-value=12 Score=16.70 Aligned_cols=62 Identities=11% Similarity=0.068 Sum_probs=45.5 Q ss_pred CCCCEEEEECCCCCH---HHHHHHHCCCCEEEEECCCCCCHHHHHHHHHHHHCCCCCCHHHHCCCC Q ss_conf 999879997589882---346775023525998425543036887875322001220000000143 Q gi|254780398|r 46 LDGITVIEIGAGPGN---LTQMLLTLGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVD 108 (284) Q Consensus 46 ~~~~~VlEIGpG~G~---LT~~Ll~~~~~~v~aiEiD~~~~~~l~~~~~~~~~~~~ii~~Dal~~d 108 (284) .+++.+|=.|.+.|. +.+.|++.++ +|+...++....+.+++.......++..+.+|+.+.+ T Consensus 32 L~gKvalVTGas~GIG~aiA~~la~~Ga-~V~i~~r~~~~~~~~~~~~~~~g~~~~~~~~Dvs~~~ 96 (279) T 3ctm_A 32 LKGKVASVTGSSGGIGWAVAEAYAQAGA-DVAIWYNSHPADEKAEHLQKTYGVHSKAYKCNISDPK 96 (279) T ss_dssp CTTCEEEETTTTSSHHHHHHHHHHHHTC-EEEEEESSSCCHHHHHHHHHHHCSCEEEEECCTTCHH T ss_pred CCCCEEEEECCCCHHHHHHHHHHHHCCC-EEEEEECCHHHHHHHHHHHHHCCCCEEEEEEECCCHH T ss_conf 8999899948786999999999998799-8999968868899999999865995699995279999 No 302 >1nm2_A Malonyl COA:acyl carrier protein malonyltransferase; alpha/beta hydrolase-like core; 2.00A {Streptomyces coelicolor A3} SCOP: c.19.1.1 d.58.23.1 PDB: 2cdh_4 2cf2_B Probab=49.67 E-value=13 Score=16.66 Aligned_cols=13 Identities=23% Similarity=0.496 Sum_probs=9.3 Q ss_pred ECCCCCHHHHHHH Q ss_conf 7589882346775 Q gi|254780398|r 54 IGAGPGNLTQMLL 66 (284) Q Consensus 54 IGpG~G~LT~~Ll 66 (284) +|-..|-++-..+ T Consensus 95 ~GhSlGE~aAl~~ 107 (317) T 1nm2_A 95 AGHSVGEITAAVF 107 (317) T ss_dssp EESTTHHHHHHHH T ss_pred EECCCCHHHHHHH T ss_conf 7647267999987 No 303 >3k30_A Histamine dehydrogenase; 6-S-cysteinyl-FMN, ADP binding site, oxidoreductase; HET: FMN ADP; 2.70A {Pimelobacter simplex} Probab=49.20 E-value=13 Score=16.61 Aligned_cols=37 Identities=27% Similarity=0.378 Sum_probs=28.7 Q ss_pred CCEEEEECCCCCHHHHH--HHHCCCCEEEEECCCCCCHHH Q ss_conf 98799975898823467--750235259984255430368 Q gi|254780398|r 48 GITVIEIGAGPGNLTQM--LLTLGARKVIVIEKDQQFFPI 85 (284) Q Consensus 48 ~~~VlEIGpG~G~LT~~--Ll~~~~~~v~aiEiD~~~~~~ 85 (284) ...|+=||.|++.|+-+ +++++. +|+.+|.+..+-.. T Consensus 391 ~KkV~VIGgGPAGL~AA~~la~~G~-~VtL~Ek~~~lGG~ 429 (690) T 3k30_A 391 DARVLVVGAGPSGLEAARALGVRGY-DVVLAEAGRDLGGR 429 (690) T ss_dssp CCEEEEECCSHHHHHHHHHHHHHTC-EEEEECSSSSSCTH T ss_pred CCEEEEECCCHHHHHHHHHHHHCCC-CEEEEEECCCCCCE T ss_conf 8679997965899999999997799-37897022776866 No 304 >1hxh_A 3BETA/17BETA-hydroxysteroid dehydrogenase; alpha-beta, rossmann fold, short-chain dehydrogenase, oxidoreductase; 1.22A {Comamonas testosteroni} SCOP: c.2.1.2 Probab=49.01 E-value=13 Score=16.60 Aligned_cols=60 Identities=22% Similarity=0.269 Sum_probs=42.9 Q ss_pred CCCCCEEEEECCCCC---HHHHHHHHCCCCEEEEECCCCCCHHHHHHHHHHHHCCCCCCHHHHCCCC Q ss_conf 899987999758988---2346775023525998425543036887875322001220000000143 Q gi|254780398|r 45 SLDGITVIEIGAGPG---NLTQMLLTLGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVD 108 (284) Q Consensus 45 ~~~~~~VlEIGpG~G---~LT~~Ll~~~~~~v~aiEiD~~~~~~l~~~~~~~~~~~~ii~~Dal~~d 108 (284) ..+++.+|=.|.+.| ++.+.|++.++ +|+...+++.-.+.+.+.+ .++...+.+|..+.+ T Consensus 3 rL~gKvalITGas~GIG~aia~~la~~Ga-~V~~~~r~~~~l~~~~~~l---~~~~~~~~~Dvt~~~ 65 (253) T 1hxh_A 3 RLQGKVALVTGGASGVGLEVVKLLLGEGA-KVAFSDINEAAGQQLAAEL---GERSMFVRHDVSSEA 65 (253) T ss_dssp TTTTCEEEETTTTSHHHHHHHHHHHHTTC-EEEEECSCHHHHHHHHHHH---CTTEEEECCCTTCHH T ss_pred CCCCCEEEEECCCCHHHHHHHHHHHHCCC-EEEEEECCHHHHHHHHHHH---CCCEEEEEECCCCHH T ss_conf 88998899948887899999999998799-9999979999999999983---896599980179999 No 305 >3gmb_A 2-methyl-3-hydroxypyridine-5-carboxylic acid oxygenase; flavin monooxygenase, oxidoreductase; HET: FAD; 2.10A {Mesorhizobium loti} PDB: 3gmc_A* Probab=48.84 E-value=11 Score=17.10 Aligned_cols=37 Identities=22% Similarity=0.162 Sum_probs=28.1 Q ss_pred CCCCCEEEEECCCCCHHHHHHH--HCCCCEEEEECCCCCC Q ss_conf 8999879997589882346775--0235259984255430 Q gi|254780398|r 45 SLDGITVIEIGAGPGNLTQMLL--TLGARKVIVIEKDQQF 82 (284) Q Consensus 45 ~~~~~~VlEIGpG~G~LT~~Ll--~~~~~~v~aiEiD~~~ 82 (284) +.....|+=||+|+..||-++. +++. .|+.+|.++.+ T Consensus 44 p~~~~~V~IVGaGpaGl~~A~~Lar~G~-~V~VlEr~~~~ 82 (415) T 3gmb_A 44 PGKTRRAEVAGGGFAGLTAAIALKQNGW-DVRLHEKSSEL 82 (415) T ss_dssp ---CCEEEEECCSHHHHHHHHHHHHTTC-EEEEECSSSSC T ss_pred CCCCCEEEEECCCHHHHHHHHHHHHCCC-CEEEECCCCCC T ss_conf 8998989998967899999999996899-99999379998 No 306 >2vou_A 2,6-dihydroxypyridine hydroxylase; oxidoreductase, plasmid, aromatic hydroxylase, nicotine degradation, flavin mono-oxygenase; HET: FAD; 2.6A {Arthrobacter nicotinovorans} SCOP: c.3.1.2 d.16.1.2 Probab=48.51 E-value=13 Score=16.68 Aligned_cols=35 Identities=26% Similarity=0.290 Sum_probs=26.1 Q ss_pred CCCEEEEECCCCCHHHHHHH--HCCCCEEEEECCCCCC Q ss_conf 99879997589882346775--0235259984255430 Q gi|254780398|r 47 DGITVIEIGAGPGNLTQMLL--TLGARKVIVIEKDQQF 82 (284) Q Consensus 47 ~~~~VlEIGpG~G~LT~~Ll--~~~~~~v~aiEiD~~~ 82 (284) ..+.|+=||+|+..||-+++ +.+. +|+.+|++++. T Consensus 4 ~~~~V~IiGaG~aGl~~A~~L~~~G~-~v~v~Er~~~~ 40 (397) T 2vou_A 4 TTDRIAVVGGSISGLTAALMLRDAGV-DVDVYERSPQP 40 (397) T ss_dssp CCSEEEEECCSHHHHHHHHHHHHTTC-EEEEECSSSSS T ss_pred CCCEEEEECCCHHHHHHHHHHHHCCC-CEEEEECCCCC T ss_conf 99819998978899999999997899-99999789998 No 307 >1ae1_A Tropinone reductase-I; oxidoreductase, tropane alkaloid biosynthesis, reduction of tropinone to tropine, short-chain dehydrogenase; HET: NAP; 2.40A {Datura stramonium} SCOP: c.2.1.2 Probab=47.55 E-value=14 Score=16.45 Aligned_cols=62 Identities=23% Similarity=0.263 Sum_probs=43.8 Q ss_pred CCCCEEEEECCCCC---HHHHHHHHCCCCEEEEECCCCCCHHHHHHHHHHHHCCCCCCHHHHCCCC Q ss_conf 99987999758988---2346775023525998425543036887875322001220000000143 Q gi|254780398|r 46 LDGITVIEIGAGPG---NLTQMLLTLGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVD 108 (284) Q Consensus 46 ~~~~~VlEIGpG~G---~LT~~Ll~~~~~~v~aiEiD~~~~~~l~~~~~~~~~~~~ii~~Dal~~d 108 (284) .+++.+|=.|.+.| ++.+.|++.++ +|+.+.+|+.-.+.+.+.......+...+.+|..+.+ T Consensus 19 L~GK~alITGas~GIG~aiA~~la~~Ga-~V~~~~r~~~~l~~~~~~~~~~g~~~~~~~~Dv~~~~ 83 (273) T 1ae1_A 19 LKGTTALVTGGSKGIGYAIVEELAGLGA-RVYTCSRNEKELDECLEIWREKGLNVEGSVCDLLSRT 83 (273) T ss_dssp CTTCEEEEESCSSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHHHHHTTCCEEEEECCTTCHH T ss_pred CCCCEEEEECCCCHHHHHHHHHHHHCCC-EEEEEECCHHHHHHHHHHHHHCCCCEEEEECCCCCHH T ss_conf 9999899928886999999999998799-9999979989999999999832995489982589999 No 308 >2cjk_A Nuclear polyadenylated RNA-binding protein 4; HRP1, RNA-binding, RNA processing, mRNA processing, nonsense-mediated mRNA decay, cleavage; NMR {Saccharomyces cerevisiae} PDB: 2km8_C Probab=47.20 E-value=5.7 Score=18.79 Aligned_cols=22 Identities=5% Similarity=0.131 Sum_probs=15.6 Q ss_pred EEEEECCCHHHHHHHHHHHHHH Q ss_conf 0112023224678899999852 Q gi|254780398|r 119 IRIIANLPYNIGTRLLFNWISA 140 (284) Q Consensus 119 ~~vvgNLPYnIss~Il~~ll~~ 140 (284) ...|+|||++++-.-|..+++. T Consensus 89 ~i~V~~l~~~~te~~l~~~F~~ 110 (167) T 2cjk_A 89 KIFVGGIGPDVRPKEFEEFFSQ 110 (167) T ss_dssp EEEEEEECTTCCHHHHHHHHHT T ss_pred EEEECCCCCCCCHHHHHHHHHH T ss_conf 6897068999999999999986 No 309 >1iqt_A AUF1, heterogeneous nuclear ribonucleoprotein D0; RNA-binding protein, hnRNP, telomere, DNA-binding protein, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 1wtb_A 1x0f_A Probab=47.03 E-value=7 Score=18.27 Aligned_cols=20 Identities=5% Similarity=0.185 Sum_probs=17.2 Q ss_pred EEECCCHHHHHHHHHHHHHH Q ss_conf 12023224678899999852 Q gi|254780398|r 121 IIANLPYNIGTRLLFNWISA 140 (284) Q Consensus 121 vvgNLPYnIss~Il~~ll~~ 140 (284) .||||||.++..-|..+... T Consensus 3 fVgnL~~~~te~~l~~~F~~ 22 (75) T 1iqt_A 3 FVGGLSPDTPEEKIREYFGG 22 (75) T ss_dssp EESCCCSSCCHHHHHHHHHH T ss_pred EECCCCCCCCHHHHHHHHHH T ss_conf 99289998979999999873 No 310 >2k4m_A TR8_protein, UPF0146 protein MTH_1000; alpha+beta, rossman fold, structural genomics, PSI-2; NMR {Methanothermobacterthermautotrophicus str} Probab=47.01 E-value=14 Score=16.40 Aligned_cols=68 Identities=19% Similarity=0.270 Sum_probs=42.4 Q ss_pred CCCCCCCHHHHHHHHHHCCCCCCCEEEEECCCCC-HHHHHHHHCCCCEEEEECCCCCCHHHHHHHHHHHHCCCCCCHHHH Q ss_conf 8411239899999999719899987999758988-234677502352599842554303688787532200122000000 Q gi|254780398|r 26 GQNFLLDLNILKKIAESSGSLDGITVIEIGAGPG-NLTQMLLTLGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDA 104 (284) Q Consensus 26 GQnFL~d~~i~~~iv~~~~~~~~~~VlEIGpG~G-~LT~~Ll~~~~~~v~aiEiD~~~~~~l~~~~~~~~~~~~ii~~Da 104 (284) |||-. +.++..+++.. .+|..|+|||-|.- ..-..+.+.....+.++++.+. .+.....|+ T Consensus 18 ~~~~w--d~la~~~~~q~--~~Ga~IIEVnvG~~~~va~~l~k~~~~~v~~~Di~P~--------------~ids~~dDv 79 (153) T 2k4m_A 18 GSHMW--NDLAVYIIRCS--GPGTRVVEVGAGRFLYVSDYIRKHSKVDLVLTDIKPS--------------HGGIVRDDI 79 (153) T ss_dssp CCHHH--HHHHHHHHHHS--CSSSEEEEETCTTCCHHHHHHHHHSCCEEEEECSSCS--------------STTEECCCS T ss_pred CHHHH--HHHHHHHHHHC--CCCCEEEEECCCCCCCHHHHHHHHHCCEEEEECCCCC--------------CCCCCCCHH T ss_conf 13329--99999999826--8998689974898620699999970966999507855--------------567764010 Q ss_pred CCCCHHH Q ss_conf 0143155 Q gi|254780398|r 105 LKVDFEK 111 (284) Q Consensus 105 l~~d~~~ 111 (284) ++-++.- T Consensus 80 ~ep~L~i 86 (153) T 2k4m_A 80 TSPRMEI 86 (153) T ss_dssp SSCCHHH T ss_pred CCCHHHH T ss_conf 1713476 No 311 >1sjr_A Polypyrimidine tract-binding protein 1; extended babbab motif, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 2adb_A Probab=46.94 E-value=5.3 Score=18.98 Aligned_cols=21 Identities=29% Similarity=0.373 Sum_probs=18.1 Q ss_pred EEEECCCHHHHHHHHHHHHHH Q ss_conf 112023224678899999852 Q gi|254780398|r 120 RIIANLPYNIGTRLLFNWISA 140 (284) Q Consensus 120 ~vvgNLPYnIss~Il~~ll~~ 140 (284) ..|+||||.+|..-|..++.. T Consensus 49 v~V~NL~~~vt~~~L~~~F~~ 69 (164) T 1sjr_A 49 IIVENLFYPVTLDVLHQIFSK 69 (164) T ss_dssp EEECSCCSCCCHHHHHHHHHH T ss_pred EEEECCCCCCCHHHHHHHHHH T ss_conf 999691999999999999701 No 312 >2jvr_A Nucleolar protein 3; RNA recognition motif, nucleus, phosphorylation, ribonucleoprotein, ribosome biogenesis, RNA-binding; NMR {Saccharomyces cerevisiae} PDB: 2osr_A Probab=46.94 E-value=6.3 Score=18.55 Aligned_cols=21 Identities=19% Similarity=0.109 Sum_probs=17.6 Q ss_pred EEEECCCHHHHHHHHHHHHHH Q ss_conf 112023224678899999852 Q gi|254780398|r 120 RIIANLPYNIGTRLLFNWISA 140 (284) Q Consensus 120 ~vvgNLPYnIss~Il~~ll~~ 140 (284) ..|+||||+++.+-|..++.. T Consensus 31 l~V~NLp~~~t~~dl~~~f~~ 51 (111) T 2jvr_A 31 ITMKNLPEGCSWQDLKDLARE 51 (111) T ss_dssp EEEECSSCCCCHHHHHHHHHH T ss_pred EEEECCCCCCCHHHHHHHHHH T ss_conf 999799999999999999987 No 313 >3lyl_A 3-oxoacyl-(acyl-carrier-protein) reductase; alpha and beta protein, NAD(P)-binding rossmann fold, csgid, oxidoreductase; 1.95A {Francisella tularensis subsp} Probab=46.51 E-value=14 Score=16.35 Aligned_cols=61 Identities=13% Similarity=0.156 Sum_probs=42.6 Q ss_pred CCCEEEEECCCCC---HHHHHHHHCCCCEEEEECCCCCCHHHHHHHHHHHHCCCCCCHHHHCCCC Q ss_conf 9987999758988---2346775023525998425543036887875322001220000000143 Q gi|254780398|r 47 DGITVIEIGAGPG---NLTQMLLTLGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVD 108 (284) Q Consensus 47 ~~~~VlEIGpG~G---~LT~~Ll~~~~~~v~aiEiD~~~~~~l~~~~~~~~~~~~ii~~Dal~~d 108 (284) +++.+|=-|.+.| ++.+.+++.++ +|+.+.+++.-.+.+.+.+.....++..+.+|..+.+ T Consensus 4 ~~KvalITGas~GIG~aiA~~la~~Ga-~V~~~~r~~~~l~~~~~~l~~~g~~~~~~~~Dv~~~~ 67 (247) T 3lyl_A 4 NEKVALVTGASRGIGFEVAHALASKGA-TVVGTATSQASAEKFENSMKEKGFKARGLVLNISDIE 67 (247) T ss_dssp TTCEEEESSCSSHHHHHHHHHHHHTTC-EEEEEESSHHHHHHHHHHHHHTTCCEEEEECCTTCHH T ss_pred CCCEEEEECCCCHHHHHHHHHHHHCCC-EEEEEECCHHHHHHHHHHHHHCCCCEEEEEEECCCHH T ss_conf 999999928886899999999998699-9999979889999999999854995899991079999 No 314 >1sez_A Protoporphyrinogen oxidase, mitochondrial; FAD-binding, para-hydroxy-benzoate-hydroxylase fold (PHBH- fold), monotopic membrane-binding domain; HET: FAD OMN TON; 2.90A {Nicotiana tabacum} SCOP: c.3.1.2 d.16.1.5 Probab=46.31 E-value=14 Score=16.34 Aligned_cols=35 Identities=31% Similarity=0.369 Sum_probs=26.2 Q ss_pred CCCEEEEECCCCCHHHHH--HHHCCCCEEEEECCCCCC Q ss_conf 998799975898823467--750235259984255430 Q gi|254780398|r 47 DGITVIEIGAGPGNLTQM--LLTLGARKVIVIEKDQQF 82 (284) Q Consensus 47 ~~~~VlEIGpG~G~LT~~--Ll~~~~~~v~aiEiD~~~ 82 (284) ..+.|+=||.|.+.||-+ |.+++. +|+.+|...+. T Consensus 12 ~~kkVvIIGaG~aGL~aA~~L~~~G~-~V~VlE~~~~~ 48 (504) T 1sez_A 12 SAKRVAVIGAGVSGLAAAYKLKIHGL-NVTVFEAEGKA 48 (504) T ss_dssp -CCEEEEECCSHHHHHHHHHHHTTSC-EEEEECSSSSS T ss_pred CCCEEEEECCCHHHHHHHHHHHHCCC-CEEEECCCCCC T ss_conf 98918998988899999999985899-99999189988 No 315 >1rkx_A CDP-glucose-4,6-dehydratase; SDR, lyase; HET: NAD; 1.80A {Yersinia pseudotuberculosis} SCOP: c.2.1.2 PDB: 1wvg_A* Probab=46.21 E-value=14 Score=16.33 Aligned_cols=59 Identities=22% Similarity=0.220 Sum_probs=38.4 Q ss_pred CCCEEEEECCCCC----HHHHHHHHCCCCEEEEECCCCCCHHHHHHHHHHHHCCCCCCHHHHCCCC Q ss_conf 9987999758988----2346775023525998425543036887875322001220000000143 Q gi|254780398|r 47 DGITVIEIGAGPG----NLTQMLLTLGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVD 108 (284) Q Consensus 47 ~~~~VlEIGpG~G----~LT~~Ll~~~~~~v~aiEiD~~~~~~l~~~~~~~~~~~~ii~~Dal~~d 108 (284) .++.||=.| |.| .|.+.|++++. .|+++.++..-...+.+.... ..+++++.+|....+ T Consensus 8 ~~KkILVTG-gtGfIGs~L~~~Ll~~g~-~V~~~~r~~~~~~~~~~~~~~-~~~~~~~~~Dl~d~~ 70 (357) T 1rkx_A 8 QGKRVFVTG-HTGFKGGWLSLWLQTMGA-TVKGYSLTAPTVPSLFETARV-ADGMQSEIGDIRDQN 70 (357) T ss_dssp TTCEEEEET-TTSHHHHHHHHHHHHTTC-EEEEEESSCSSSSCHHHHTTT-TTTSEEEECCTTCHH T ss_pred CCCEEEEEC-CCCHHHHHHHHHHHHCCC-EEEEEECCCCCCHHHHHHHCC-CCCCEEEECCCCCHH T ss_conf 959899968-997899999999997799-899997899861767765401-479769985368979 No 316 >3nrn_A Uncharacterized protein PF1083; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative; HET: AMP; 2.10A {Pyrococcus furiosus} Probab=46.16 E-value=13 Score=16.60 Aligned_cols=14 Identities=21% Similarity=0.202 Sum_probs=9.0 Q ss_pred EEEECCCHHHHHHH Q ss_conf 11202322467889 Q gi|254780398|r 120 RIIANLPYNIGTRL 133 (284) Q Consensus 120 ~vvgNLPYnIss~I 133 (284) .||+|+|...+.++ T Consensus 234 ~VI~a~~~~~~~~L 247 (421) T 3nrn_A 234 VAISNVGVRETVKL 247 (421) T ss_dssp EEEECSCHHHHHHH T ss_pred EEEECCCHHHHHHH T ss_conf 99997999999986 No 317 >1w6u_A 2,4-dienoyl-COA reductase, mitochondrial precursor; short chain dehydrogenase, beta- oxidation, NADP, oxidoreductase; HET: HXC NAP; 1.75A {Homo sapiens} SCOP: c.2.1.2 PDB: 1w73_A* 1w8d_A* Probab=45.72 E-value=15 Score=16.28 Aligned_cols=63 Identities=30% Similarity=0.474 Sum_probs=44.9 Q ss_pred CCCCCEEEEECCCCC---HHHHHHHHCCCCEEEEECCCCCCHHHHH-HHHHHHHCCCCCCHHHHCCCC Q ss_conf 899987999758988---2346775023525998425543036887-875322001220000000143 Q gi|254780398|r 45 SLDGITVIEIGAGPG---NLTQMLLTLGARKVIVIEKDQQFFPILK-DISSQHPNRLEIIQDDALKVD 108 (284) Q Consensus 45 ~~~~~~VlEIGpG~G---~LT~~Ll~~~~~~v~aiEiD~~~~~~l~-~~~~~~~~~~~ii~~Dal~~d 108 (284) ..+|+.+|=.|.+.| ++.+.|++.++ +|+...++..-.+.+. ++.....+++..+.+|..+.+ T Consensus 23 ~L~GKvalVTGgs~GIG~aiA~~la~~Ga-~V~i~~r~~~~l~~~~~~l~~~~g~~~~~~~~Dls~~~ 89 (302) T 1w6u_A 23 SFQGKVAFITGGGTGLGKGMTTLLSSLGA-QCVIASRKMDVLKATAEQISSQTGNKVHAIQCDVRDPD 89 (302) T ss_dssp TTTTCEEEEETTTSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHHHHHHHSSCEEEEECCTTCHH T ss_pred CCCCCEEEEECCCCHHHHHHHHHHHHCCC-EEEEEECCHHHHHHHHHHHHHHHCCCEEEEEEECCCHH T ss_conf 98999899937986899999999998799-89999798889999999998863992899993289999 No 318 >1rk8_A CG8781-PA, CG8781-PA protein; mRNA processing, RRM, RBD, NMD, oskar mRNA localization, translation; 1.90A {Drosophila melanogaster} SCOP: d.58.7.1 PDB: 1hl6_A Probab=45.72 E-value=8.1 Score=17.87 Aligned_cols=22 Identities=5% Similarity=0.013 Sum_probs=18.1 Q ss_pred EEEEECCCHHHHHHHHHHHHHH Q ss_conf 0112023224678899999852 Q gi|254780398|r 119 IRIIANLPYNIGTRLLFNWISA 140 (284) Q Consensus 119 ~~vvgNLPYnIss~Il~~ll~~ 140 (284) ..+|||||+++|-.-|..++.. T Consensus 74 ~lfV~nLp~~~te~~L~~~F~~ 95 (165) T 1rk8_A 74 ILFVTSIHEEAQEDEIQEKFCD 95 (165) T ss_dssp EEEEESCCTTCCHHHHHHHHGG T ss_pred EEEECCCCCCCCHHHHHHHHHH T ss_conf 8998189985889999999998 No 319 >2c07_A 3-oxoacyl-(acyl-carrier protein) reductase; oxidoreductase, FABG, short-chain alcohol reductase, fatty acid biosynthesis, apicoplast; 1.5A {Plasmodium falciparum} SCOP: c.2.1.2 Probab=45.36 E-value=15 Score=16.24 Aligned_cols=62 Identities=21% Similarity=0.204 Sum_probs=42.9 Q ss_pred CCCCEEEEECCCCC---HHHHHHHHCCCCEEEEECCCCCCHHHHHHHHHHHHCCCCCCHHHHCCCC Q ss_conf 99987999758988---2346775023525998425543036887875322001220000000143 Q gi|254780398|r 46 LDGITVIEIGAGPG---NLTQMLLTLGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVD 108 (284) Q Consensus 46 ~~~~~VlEIGpG~G---~LT~~Ll~~~~~~v~aiEiD~~~~~~l~~~~~~~~~~~~ii~~Dal~~d 108 (284) .+++.+|=-|.+.| ++.+.|++.++ +|+...+|+.-++.+.+.......+...+.+|+.+.+ T Consensus 42 lenKvalITGas~GIG~aiA~~la~~Ga-~Vvi~~r~~~~l~~~~~~l~~~g~~~~~~~~Dvtd~~ 106 (285) T 2c07_A 42 GENKVALVTGAGRGIGREIAKMLAKSVS-HVICISRTQKSCDSVVDEIKSFGYESSGYAGDVSKKE 106 (285) T ss_dssp CSSCEEEEESTTSHHHHHHHHHHTTTSS-EEEEEESSHHHHHHHHHHHHTTTCCEEEEECCTTCHH T ss_pred CCCCEEEEECCCCHHHHHHHHHHHHCCC-EEEEEECCHHHHHHHHHHHHHCCCCEEEEECCCCCHH T ss_conf 8997899908887899999999998699-9999979999999999999963994899983489999 No 320 >2hzc_A Splicing factor U2AF 65 kDa subunit; RNA splicing, RRM, RNA recognition, alternative conformation, RNA binding protein; HET: P6G; 1.47A {Homo sapiens} PDB: 1u2f_A Probab=45.01 E-value=7.7 Score=17.99 Aligned_cols=22 Identities=18% Similarity=0.523 Sum_probs=17.3 Q ss_pred EEEEECCCHHHHHHHHHHHHHH Q ss_conf 0112023224678899999852 Q gi|254780398|r 119 IRIIANLPYNIGTRLLFNWISA 140 (284) Q Consensus 119 ~~vvgNLPYnIss~Il~~ll~~ 140 (284) -..||||||+++-.-|..++.. T Consensus 8 rlyVgNLp~~~te~~l~~~f~~ 29 (87) T 2hzc_A 8 RLYVGNIPFGITEEAMMDFFNA 29 (87) T ss_dssp EEEEESCCTTCCHHHHHHHHHH T ss_pred EEEEECCCCCCCHHHHHHHHHH T ss_conf 8999497985859999999998 No 321 >2dha_A FLJ20171 protein; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Probab=44.69 E-value=13 Score=16.61 Aligned_cols=19 Identities=11% Similarity=0.391 Sum_probs=16.1 Q ss_pred EECCCHHHHHHHHHHHHHH Q ss_conf 2023224678899999852 Q gi|254780398|r 122 IANLPYNIGTRLLFNWISA 140 (284) Q Consensus 122 vgNLPYnIss~Il~~ll~~ 140 (284) |.||||+++-.=|..++.. T Consensus 28 v~nLP~~~te~dI~~~F~~ 46 (123) T 2dha_A 28 MRGLPFTATAEEVVAFFGQ 46 (123) T ss_dssp ECSCCTTCCHHHHHHHHHT T ss_pred EECCCCCCCHHHHHHHHHH T ss_conf 8488987989999999997 No 322 >3im9_A MCAT, MCT, malonyl COA-acyl carrier protein transacylase; fatty acid synthesis, malonyl-COA: acyl carrier protein TRAN (MCAT), FABD; 1.46A {Staphylococcus aureus} Probab=44.52 E-value=11 Score=16.95 Aligned_cols=12 Identities=17% Similarity=0.562 Sum_probs=8.0 Q ss_pred ECCCCCHHHHHH Q ss_conf 758988234677 Q gi|254780398|r 54 IGAGPGNLTQML 65 (284) Q Consensus 54 IGpG~G~LT~~L 65 (284) +|-..|-+|-.. T Consensus 94 ~GhSlGE~aA~~ 105 (316) T 3im9_A 94 MGHSLGEYSSLV 105 (316) T ss_dssp EESTTHHHHHHH T ss_pred EECCHHHHHHHH T ss_conf 446774899999 No 323 >3mdf_A Peptidyl-prolyl CIS-trans isomerase E; RRM domain, PHD finger, CYP33, MLL, RNA binding protein, ALT splicing, mRNA processing, mRNA splicing; 1.85A {Homo sapiens} PDB: 2kyx_A 3lpy_A* Probab=44.05 E-value=12 Score=16.75 Aligned_cols=24 Identities=8% Similarity=0.184 Sum_probs=18.9 Q ss_pred CCEEEEECCCHHHHHHHHHHHHHH Q ss_conf 220112023224678899999852 Q gi|254780398|r 117 SPIRIIANLPYNIGTRLLFNWISA 140 (284) Q Consensus 117 ~~~~vvgNLPYnIss~Il~~ll~~ 140 (284) .....|||||++++..-|..++.. T Consensus 7 ~~~lfV~nLp~~~t~~~l~~~F~~ 30 (85) T 3mdf_A 7 KRVLYVGGLAEEVDDKVLHAAFIP 30 (85) T ss_dssp SSEEEEECCCTTCCHHHHHHHHGG T ss_pred CCEEEEECCCCCCCHHHHHHHHHH T ss_conf 759999089986979999999986 No 324 >1d5t_A Guanine nucleotide dissociation inhibitor; ultra-high resolution, hydrolase inhibitor; 1.04A {Bos taurus} SCOP: c.3.1.3 d.16.1.6 PDB: 1lv0_A* 1gnd_A Probab=44.05 E-value=12 Score=16.85 Aligned_cols=32 Identities=22% Similarity=0.441 Sum_probs=23.6 Q ss_pred EEEEECCCCCHHHHH--HHHCCCCEEEEECCCCCC Q ss_conf 799975898823467--750235259984255430 Q gi|254780398|r 50 TVIEIGAGPGNLTQM--LLTLGARKVIVIEKDQQF 82 (284) Q Consensus 50 ~VlEIGpG~G~LT~~--Ll~~~~~~v~aiEiD~~~ 82 (284) .|+=||+|.+.|+-+ |+++| ++|+.+|..... T Consensus 8 DvvIIGaG~~Gl~aA~~La~~G-~~V~vlE~~~~~ 41 (433) T 1d5t_A 8 DVIVLGTGLTECILSGIMSVNG-KKVLHMDRNPYY 41 (433) T ss_dssp SEEEECCSHHHHHHHHHHHHTT-CCEEEECSSSSS T ss_pred CEEEECCCHHHHHHHHHHHHCC-CCEEEECCCCCC T ss_conf 8899894989999999999879-989998889999 No 325 >1zk4_A R-specific alcohol dehydrogenase; short chain reductases/dehydrogenases, magnesium dependence, oxidoreductase; HET: NAP; 1.00A {Lactobacillus brevis} SCOP: c.2.1.2 PDB: 1nxq_A* 1zjy_A* 1zjz_A* 1zk0_A* 1zk1_A* 1zk2_A 1zk3_A Probab=43.82 E-value=16 Score=16.10 Aligned_cols=63 Identities=22% Similarity=0.360 Sum_probs=45.1 Q ss_pred CCCCCCEEEEECCCCC---HHHHHHHHCCCCEEEEECCCCCCHHHHHHHHHHHHCCCCCCHHHHCCCC Q ss_conf 9899987999758988---2346775023525998425543036887875322001220000000143 Q gi|254780398|r 44 GSLDGITVIEIGAGPG---NLTQMLLTLGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVD 108 (284) Q Consensus 44 ~~~~~~~VlEIGpG~G---~LT~~Ll~~~~~~v~aiEiD~~~~~~l~~~~~~~~~~~~ii~~Dal~~d 108 (284) +..+++.+|=-|.+.| ++.+.|++.++ +|+...++.+..+.+.+.... ++++..+.+|+.+.+ T Consensus 2 nrL~gK~alVTGas~GIG~aia~~la~~Ga-~V~~~~r~~~~~~~~~~~~~~-~~~~~~~~~Dv~~~~ 67 (251) T 1zk4_A 2 NRLDGKVAIITGGTLGIGLAIATKFVEEGA-KVMITGRHSDVGEKAAKSVGT-PDQIQFFQHDSSDED 67 (251) T ss_dssp CTTTTCEEEETTTTSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHHHCC-TTTEEEEECCTTCHH T ss_pred CCCCCCEEEEECCCCHHHHHHHHHHHHCCC-EEEEEECCHHHHHHHHHHHCC-CCCEEEEECCCCCHH T ss_conf 988998799948787899999999998799-999997987899999998578-995799982689999 No 326 >3md1_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RBD, RNP, poly(U) binding, acetylation, cytoplasm nucleus, RNA-binding; 1.60A {Saccharomyces cerevisiae} Probab=43.27 E-value=8 Score=17.88 Aligned_cols=21 Identities=19% Similarity=0.232 Sum_probs=17.6 Q ss_pred EEEECCCHHHHHHHHHHHHHH Q ss_conf 112023224678899999852 Q gi|254780398|r 120 RIIANLPYNIGTRLLFNWISA 140 (284) Q Consensus 120 ~vvgNLPYnIss~Il~~ll~~ 140 (284) ..|||||++++.+-|..++.. T Consensus 4 lfV~nL~~~~te~~L~~~F~~ 24 (83) T 3md1_A 4 LFVGDLNVNVDDETLRNAFKD 24 (83) T ss_dssp EEEECCCTTCCHHHHHHHHTT T ss_pred EEEECCCCCCCHHHHHHHHHH T ss_conf 999497985889999999975 No 327 >3gaf_A 7-alpha-hydroxysteroid dehydrogenase; seattle structural genomics center for infectious disease, ssgcid, oxidoreductase, structural genomics; 2.20A {Brucella melitensis} Probab=42.65 E-value=16 Score=15.99 Aligned_cols=62 Identities=16% Similarity=0.176 Sum_probs=43.2 Q ss_pred CCCCEEEEECCCCC---HHHHHHHHCCCCEEEEECCCCCCHHHHHHHHHHHHCCCCCCHHHHCCCC Q ss_conf 99987999758988---2346775023525998425543036887875322001220000000143 Q gi|254780398|r 46 LDGITVIEIGAGPG---NLTQMLLTLGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVD 108 (284) Q Consensus 46 ~~~~~VlEIGpG~G---~LT~~Ll~~~~~~v~aiEiD~~~~~~l~~~~~~~~~~~~ii~~Dal~~d 108 (284) .+++.+|=.|.+.| ++.+.|++.++ +|+...++..-.+.+.+.+.....++..+.+|..+.+ T Consensus 10 L~gKvalITGas~GIG~aia~~la~~Ga-~V~~~~~~~~~~~~~~~~l~~~g~~~~~~~~Dv~~~~ 74 (256) T 3gaf_A 10 LNDAVAIVTGAAAGIGRAIAGTFAKAGA-SVVVTDLKSEGAEAVAAAIRQAGGKAIGLECNVTDEQ 74 (256) T ss_dssp CTTCEEEECSCSSHHHHHHHHHHHHHTC-EEEEEESSHHHHHHHHHHHHHTTCCEEEEECCTTCHH T ss_pred CCCCEEEEECCCCHHHHHHHHHHHHCCC-EEEEEECCHHHHHHHHHHHHHCCCCEEEEEECCCCHH T ss_conf 9999899948676899999999998799-9999979889999999999964993899980189999 No 328 >2bry_A NEDD9 interacting protein with calponin homology and LIM domains; transport, coiled coil, cytoskeleton, FAD, flavoprotein, metal-binding, zinc; HET: FAD; 1.45A {Mus musculus} PDB: 2c4c_A* 2bra_A* Probab=42.64 E-value=16 Score=16.09 Aligned_cols=52 Identities=23% Similarity=0.457 Sum_probs=34.5 Q ss_pred CCCCHHHHHHHHHHCC--------CCCCCEEEEECCCCCHHHHHH--HHCCCCEEEEECCCCC Q ss_conf 1239899999999719--------899987999758988234677--5023525998425543 Q gi|254780398|r 29 FLLDLNILKKIAESSG--------SLDGITVIEIGAGPGNLTQML--LTLGARKVIVIEKDQQ 81 (284) Q Consensus 29 FL~d~~i~~~iv~~~~--------~~~~~~VlEIGpG~G~LT~~L--l~~~~~~v~aiEiD~~ 81 (284) |=.-+.+-.+.-+.+. ...+..|+=||+|+..||-++ ...|. +|+.+|..+. T Consensus 65 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~VlIVGAGPaGL~~A~~La~~G~-~V~VlEk~~~ 126 (497) T 2bry_A 65 YWSAKSLWAKLDKRASQPVYQQGQACTNTKCLVVGAGPCGLRAAVELALLGA-RVVLVEKRIK 126 (497) T ss_dssp STTTHHHHHHHHHHHTSGGGGGGTTTTTCEEEEECCSHHHHHHHHHHHHTTC-EEEEEESCSS T ss_pred CEEHHHHCCCHHHHCCCCCCCCCCCCCCCEEEEECCCHHHHHHHHHHHHCCC-CEEEEECCCC T ss_conf 4344332242645327455446887779849998988899999999997799-5899815899 No 329 >2cqp_A RNA-binding protein 12; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1 Probab=42.22 E-value=11 Score=17.06 Aligned_cols=22 Identities=14% Similarity=0.489 Sum_probs=17.5 Q ss_pred EEEEECCCHHHHHHHHHHHHHH Q ss_conf 0112023224678899999852 Q gi|254780398|r 119 IRIIANLPYNIGTRLLFNWISA 140 (284) Q Consensus 119 ~~vvgNLPYnIss~Il~~ll~~ 140 (284) ...|+||||+++..=|..++.. T Consensus 17 ~i~v~nLp~~~t~~dl~~~F~~ 38 (98) T 2cqp_A 17 IIKVQNMPFTVSIDEILDFFYG 38 (98) T ss_dssp EEEEESCCTTCCHHHHHHHTTT T ss_pred EEEEECCCCCCCHHHHHHHHHH T ss_conf 9999297998989999999997 No 330 >2eih_A Alcohol dehydrogenase; zinc ION binding protein, structural genomics, NPPSFA; 2.30A {Thermus thermophilus HB8} Probab=42.17 E-value=16 Score=15.94 Aligned_cols=49 Identities=18% Similarity=0.203 Sum_probs=32.9 Q ss_pred HHCCCCCCCEEEEECCCC--CHHHHHHHHCCCCEEEEECCCCCCHHHHHHH Q ss_conf 971989998799975898--8234677502352599842554303688787 Q gi|254780398|r 41 ESSGSLDGITVIEIGAGP--GNLTQMLLTLGARKVIVIEKDQQFFPILKDI 89 (284) Q Consensus 41 ~~~~~~~~~~VlEIGpG~--G~LT~~Ll~~~~~~v~aiEiD~~~~~~l~~~ 89 (284) +.+++.++++|+=+|+|. |.++..+++....+|++++.++.-.+.+++. T Consensus 160 ~~~~~~~g~~VlV~Gag~~~g~~~~~la~~~g~~vi~~~~~~~~~~~~~~~ 210 (343) T 2eih_A 160 DKLGVRPGDDVLVMAAGSGVSVAAIQIAKLFGARVIATAGSEDKLRRAKAL 210 (343) T ss_dssp TTSCCCTTCEEEECSTTSTTHHHHHHHHHHTTCEEEEEESSHHHHHHHHHH T ss_pred HHHCCCCCCEEEEECCCHHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHC T ss_conf 964969949999998978999999999998599999997999999999965 No 331 >2cpf_A RNA binding motif protein 19; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1 Probab=42.15 E-value=11 Score=17.15 Aligned_cols=22 Identities=23% Similarity=0.144 Sum_probs=18.2 Q ss_pred EEEEECCCHHHHHHHHHHHHHH Q ss_conf 0112023224678899999852 Q gi|254780398|r 119 IRIIANLPYNIGTRLLFNWISA 140 (284) Q Consensus 119 ~~vvgNLPYnIss~Il~~ll~~ 140 (284) ...|+||||+++-.-|..++.. T Consensus 7 ~l~V~nLp~~~~e~~l~~~F~~ 28 (98) T 2cpf_A 7 GLFIKNLNFSTTEETLKGVFSK 28 (98) T ss_dssp CEEEESCCTTCCHHHHHHHHHT T ss_pred EEEEECCCCCCCHHHHHHHHHH T ss_conf 9999399998999999999998 No 332 >1gte_A Dihydropyrimidine dehydrogenase; electron transfer, flavin, iron-sulfur clusters, pyrimidine catabolism, 5-fluorouracil degradation, oxidoreductase; HET: FMN FAD; 1.65A {Sus scrofa} SCOP: a.1.2.2 c.1.4.1 c.3.1.1 c.4.1.1 d.58.1.5 PDB: 1gt8_A* 1gth_A* 1h7w_A* 1h7x_A* Probab=42.10 E-value=14 Score=16.31 Aligned_cols=31 Identities=32% Similarity=0.464 Sum_probs=15.2 Q ss_pred CCEEEEECCCCCHHH--HHHHHCCCCEEEEECC Q ss_conf 987999758988234--6775023525998425 Q gi|254780398|r 48 GITVIEIGAGPGNLT--QMLLTLGARKVIVIEK 78 (284) Q Consensus 48 ~~~VlEIGpG~G~LT--~~Ll~~~~~~v~aiEi 78 (284) +..|+=||.|.-++- ..+++.+++.|+.+.. T Consensus 332 gk~VvVIGGG~tA~D~A~ta~RlGA~~Vtiv~r 364 (1025) T 1gte_A 332 RGAVIVLGAGDTAFDCATSALRCGARRVFLVFR 364 (1025) T ss_dssp CSEEEEECSSHHHHHHHHHHHHTTCSEEEEECS T ss_pred CCEEEEECCCHHHHHHHHHHHHCCCCEEEEEEC T ss_conf 998999898799999999999859998999960 No 333 >2iid_A L-amino-acid oxidase; flavoenzyme, FAD binding domain, reaction mechanism, sustrate binding, oxidoreductase; HET: NAG FUC PHE FAD; 1.80A {Calloselasma rhodostoma} SCOP: c.3.1.2 d.16.1.5 PDB: 1f8s_A* 1f8r_A* 1reo_A* 1tdk_A* 1tdn_A* 1tdo_A* Probab=42.08 E-value=17 Score=15.93 Aligned_cols=35 Identities=29% Similarity=0.369 Sum_probs=24.6 Q ss_pred CCEEEEECCCCCHHHH--HHHHCCCCEEEEECCCCCCH Q ss_conf 9879997589882346--77502352599842554303 Q gi|254780398|r 48 GITVIEIGAGPGNLTQ--MLLTLGARKVIVIEKDQQFF 83 (284) Q Consensus 48 ~~~VlEIGpG~G~LT~--~Ll~~~~~~v~aiEiD~~~~ 83 (284) ...|+=||+|.+.||- .|.+.+. .|+.+|...++= T Consensus 33 pk~V~IIGaGiaGLtAA~~L~~~G~-~V~vlEa~~~~G 69 (498) T 2iid_A 33 PKHVVIVGAGMAGLSAAYVLAGAGH-QVTVLEASERPG 69 (498) T ss_dssp CCEEEEECCBHHHHHHHHHHHHHTC-EEEEECSSSSSB T ss_pred CCCEEEECCCHHHHHHHHHHHHCCC-CEEEEECCCCCC T ss_conf 9988998978899999999986899-999995899884 No 334 >2f9d_A PRE-mRNA branch site protein P14; P14 SF3BP14 SF3B155 SAP155 RRM, RNA binding protein; 2.50A {Homo sapiens} SCOP: d.58.7.1 PDB: 2f9j_A 2fho_B Probab=41.80 E-value=12 Score=16.82 Aligned_cols=23 Identities=30% Similarity=0.551 Sum_probs=18.5 Q ss_pred CEEEEECCCHHHHHHHHHHHHHH Q ss_conf 20112023224678899999852 Q gi|254780398|r 118 PIRIIANLPYNIGTRLLFNWISA 140 (284) Q Consensus 118 ~~~vvgNLPYnIss~Il~~ll~~ 140 (284) ....|+|||++++..-|..++.. T Consensus 19 ~~l~V~nLp~~~t~~~l~~~F~~ 41 (125) T 2f9d_A 19 RILYIRNLPYKITAEEMYDIFGK 41 (125) T ss_dssp SEEEEESCCTTCCHHHHHHHHHT T ss_pred CEEEEECCCCCCCHHHHHHHHHH T ss_conf 99999399998999999999998 No 335 >1i8t_A UDP-galactopyranose mutase; rossman fold, FAD, contractase, isomerase; HET: FAD; 2.40A {Escherichia coli} SCOP: c.4.1.3 d.16.1.7 Probab=41.39 E-value=16 Score=16.00 Aligned_cols=38 Identities=29% Similarity=0.253 Sum_probs=28.0 Q ss_pred EEEEECCCCCHHHHH--HHHCCCCEEEEECCCCCCHHHHHH Q ss_conf 799975898823467--750235259984255430368878 Q gi|254780398|r 50 TVIEIGAGPGNLTQM--LLTLGARKVIVIEKDQQFFPILKD 88 (284) Q Consensus 50 ~VlEIGpG~G~LT~~--Ll~~~~~~v~aiEiD~~~~~~l~~ 88 (284) .|+=||+|...||-+ |.+++ .+|+.+|.+.+.=..++. T Consensus 3 divIIGaG~sGL~aA~~L~~~g-~~V~vlEk~~~~GG~~~t 42 (367) T 1i8t_A 3 DYIIVGSGLFGAVCANELKKLN-KKVLVIEKRNHIGGNAYT 42 (367) T ss_dssp EEEEECCSHHHHHHHHHHGGGT-CCEEEECSSSSSSGGGCE T ss_pred CEEEECCCHHHHHHHHHHHHCC-CCEEEEECCCCCCCCEEE T ss_conf 5999888389999999999689-977999789977362888 No 336 >1u6f_A Tcubp1, RNA-binding protein UBP1; trypanosome, mRNA-binding protein, GU-rich RNA, structure; NMR {Trypanosoma cruzi} SCOP: d.58.7.1 Probab=41.32 E-value=10 Score=17.22 Aligned_cols=21 Identities=10% Similarity=0.186 Sum_probs=17.8 Q ss_pred EEEECCCHHHHHHHHHHHHHH Q ss_conf 112023224678899999852 Q gi|254780398|r 120 RIIANLPYNIGTRLLFNWISA 140 (284) Q Consensus 120 ~vvgNLPYnIss~Il~~ll~~ 140 (284) ..|||||++++..-|..++.. T Consensus 45 lfV~nLp~~~te~~L~~~F~~ 65 (139) T 1u6f_A 45 LMVNYIPTTVDEVQLRQLFER 65 (139) T ss_dssp EEEESCSTTCCHHHHHHHHHH T ss_pred EEEECCCCCCCHHHHHHHHHH T ss_conf 999699986989999999985 No 337 >1x4a_A Splicing factor, arginine/serine-rich 1 (splicing factor 2, alternate splicing factor)...; structure genomics, SURP domain, splicing factor SF2; NMR {Homo sapiens} SCOP: d.58.7.1 Probab=40.93 E-value=10 Score=17.18 Aligned_cols=21 Identities=24% Similarity=0.262 Sum_probs=17.1 Q ss_pred EEEECCCHHHHHHHHHHHHHH Q ss_conf 112023224678899999852 Q gi|254780398|r 120 RIIANLPYNIGTRLLFNWISA 140 (284) Q Consensus 120 ~vvgNLPYnIss~Il~~ll~~ 140 (284) ..|+||||+++..-|..++.. T Consensus 25 lfV~nLp~~~te~~L~~~F~~ 45 (109) T 1x4a_A 25 IYVGNLPPDIRTKDIEDVFYK 45 (109) T ss_dssp EEEESCCTTCCHHHHHHHHGG T ss_pred EEEECCCCCCCHHHHHHHHHH T ss_conf 999798987989999999841 No 338 >1b37_A Protein (polyamine oxidase); flavin-dependent amine oxidase, oxidoreductase; HET: NAG FCA MAN FAD; 1.90A {Zea mays} SCOP: c.3.1.2 d.16.1.5 PDB: 1b5q_A* 1h81_A* 1h82_A* 1h83_A* 1h84_A* 1h86_A* Probab=40.90 E-value=13 Score=16.52 Aligned_cols=35 Identities=26% Similarity=0.508 Sum_probs=17.8 Q ss_pred CCEEEEECCCCCHHHHH--HHHCCCCEEEEECCCCCC Q ss_conf 98799975898823467--750235259984255430 Q gi|254780398|r 48 GITVIEIGAGPGNLTQM--LLTLGARKVIVIEKDQQF 82 (284) Q Consensus 48 ~~~VlEIGpG~G~LT~~--Ll~~~~~~v~aiEiD~~~ 82 (284) +-.|+=||+|.+.||-+ |.+.+.+.|+.+|...+. T Consensus 4 ~~~VvIIGaGiaGL~aA~~L~~~G~~~V~vlEa~~rv 40 (472) T 1b37_A 4 GPRVIVVGAGMSGISAAKRLSEAGITDLLILEATDHI 40 (472) T ss_dssp -CCEEEECCBHHHHHHHHHHHHTTCCCEEEECSSSSS T ss_pred CCCEEEECCCHHHHHHHHHHHHCCCCCEEEEECCCCC T ss_conf 9988998978899999999996799988999279987 No 339 >2qc3_A MCT, malonyl COA-acyl carrier protein transacylase; malonyl-COA:ACP transacylase, , nucleophilic attack; 2.30A {Mycobacterium tuberculosis H37RV} PDB: 2qj3_A Probab=40.81 E-value=15 Score=16.28 Aligned_cols=24 Identities=25% Similarity=0.365 Sum_probs=14.6 Q ss_pred CCCCCCCEEEEECCCCCHHHHHHH Q ss_conf 198999879997589882346775 Q gi|254780398|r 43 SGSLDGITVIEIGAGPGNLTQMLL 66 (284) Q Consensus 43 ~~~~~~~~VlEIGpG~G~LT~~Ll 66 (284) .++...+...=+|-..|-++-..+ T Consensus 78 ~g~~~~~P~~v~GhSlGE~aAl~~ 101 (303) T 2qc3_A 78 RCVLAGKDVIVAGHSVGEIAAYAI 101 (303) T ss_dssp TTTTTTCCEEEEECTTHHHHHHHH T ss_pred HHHCCCCCCEEEECCHHHHHHHHH T ss_conf 630033472798767628999997 No 340 >2e58_A MNMC2; tRNA wobble uridine, modification enzyme, genetic CODE, 5- methylaminomethyl-2-thiouridine, methyltransferase, 2-codon SETS; HET: SAM; 2.50A {Aquifex aeolicus VF5} Probab=40.75 E-value=17 Score=15.80 Aligned_cols=60 Identities=20% Similarity=0.325 Sum_probs=30.6 Q ss_pred CCCCCCCCC--CHHHH---HHHHHHCC------CCCCCEEEEECCCCCH---HHHH-HHHCCCC-EEEEECCCCCC Q ss_conf 365841123--98999---99999719------8999879997589882---3467-7502352-59984255430 Q gi|254780398|r 23 KYMGQNFLL--DLNIL---KKIAESSG------SLDGITVIEIGAGPGN---LTQM-LLTLGAR-KVIVIEKDQQF 82 (284) Q Consensus 23 k~lGQnFL~--d~~i~---~~iv~~~~------~~~~~~VlEIGpG~G~---LT~~-Ll~~~~~-~v~aiEiD~~~ 82 (284) ..+|++|=- +-.+. +..++... -.+.-+|+|||-|+|- +|-. +.+.++. ++..+++|... T Consensus 61 ~~f~E~YHS~~~GAl~ES~~vFI~~~~l~~r~~~~~~i~ILEiGFGtGlN~l~tl~~~~~~~~~~~l~~isiE~~~ 136 (308) T 2e58_A 61 KTYGEPYHSQTAGAIRESLYKFVRPSRILEKAKERKVIRILDVGFGLGYNLAVALKHLWEVNPKLRVEIISFEKEL 136 (308) T ss_dssp TTTTEESSCTTTCHHHHHHHHTHHHHTHHHHTTTCSEEEEEEECCTTSHHHHHHHHHHHHHCTTCEEEEEEEESSC T ss_pred CCCCCCCCCCCCCHHHHHHHHHHCCCCHHHHHCCCCCEEEEEECCCCCHHHHHHHHHHHHHCCCCCEEEEEHHHHH T ss_conf 7658866799876899999987035772677536997199995665128999999999973987624886403879 No 341 >3grp_A 3-oxoacyl-(acyl carrierprotein) reductase; structural genomics, oxidoreductase; 2.09A {Bartonella henselae str} PDB: 3enn_A 3emk_A Probab=40.52 E-value=17 Score=15.78 Aligned_cols=82 Identities=11% Similarity=0.084 Sum_probs=50.0 Q ss_pred CCCCEEEEECCCCC---HHHHHHHHCCCCEEEEECCCCCCHHHHHHHHHHHHCCCCCCHHHHCCCCH-HHHC----CC-C Q ss_conf 99987999758988---23467750235259984255430368878753220012200000001431-5521----33-2 Q gi|254780398|r 46 LDGITVIEIGAGPG---NLTQMLLTLGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDF-EKFF----NI-S 116 (284) Q Consensus 46 ~~~~~VlEIGpG~G---~LT~~Ll~~~~~~v~aiEiD~~~~~~l~~~~~~~~~~~~ii~~Dal~~d~-~~~~----~~-~ 116 (284) .+++.+|=.|.+.| ++.+.+++.++ +|+.+.++..-++.+. .+...++..+.+|+.+.+- ..+. .. + T Consensus 25 L~gK~alVTGas~GIG~aia~~la~~Ga-~V~i~~r~~~~l~~~~---~~~g~~~~~~~~Dv~~~~~v~~~~~~~~~~~g 100 (266) T 3grp_A 25 LTGRKALVTGATGGIGEAIARCFHAQGA-IVGLHGTREDKLKEIA---ADLGKDVFVFSANLSDRKSIKQLAEVAEREME 100 (266) T ss_dssp CTTCEEEESSTTSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHH---HHHCSSEEEEECCTTSHHHHHHHHHHHHHHHT T ss_pred CCCCEEEEECCCCHHHHHHHHHHHHCCC-EEEEEECCHHHHHHHH---HHHCCCEEEEEECCCCHHHHHHHHHHHHHHCC T ss_conf 8999899938786899999999998799-9999979999999999---98399779999017999999999999999809 Q ss_pred CCEEEEECCCHHHHH Q ss_conf 220112023224678 Q gi|254780398|r 117 SPIRIIANLPYNIGT 131 (284) Q Consensus 117 ~~~~vvgNLPYnIss 131 (284) ..-.+|-|--+.... T Consensus 101 ~iDiLVnnAg~~~~~ 115 (266) T 3grp_A 101 GIDILVNNAGITRDG 115 (266) T ss_dssp SCCEEEECCCCC--- T ss_pred CCCEEEECCCCCCCC T ss_conf 983999899679998 No 342 >2e1m_A L-glutamate oxidase; L-amino acid oxidase, FAD, L-GOX, flavoprotein, 3D-structure, oxidoreductase; HET: FAD; 2.80A {Streptomyces SP} Probab=40.51 E-value=17 Score=15.78 Aligned_cols=34 Identities=24% Similarity=0.406 Sum_probs=26.3 Q ss_pred CCCCCEEEEECCCCCHHHH--HHHHCCCCEEEEECCC Q ss_conf 8999879997589882346--7750235259984255 Q gi|254780398|r 45 SLDGITVIEIGAGPGNLTQ--MLLTLGARKVIVIEKD 79 (284) Q Consensus 45 ~~~~~~VlEIGpG~G~LT~--~Ll~~~~~~v~aiEiD 79 (284) ..+...|+=||+|.+.||- .|.+.+ .+|+.+|.. T Consensus 41 ~~~~k~VaIIGAGisGL~aA~~L~~~G-~~VtVlEa~ 76 (376) T 2e1m_A 41 PGPPKRILIVGAGIAGLVAGDLLTRAG-HDVTILEAN 76 (376) T ss_dssp CCSCCEEEEECCBHHHHHHHHHHHHTS-CEEEEECSC T ss_pred CCCCCEEEEECCCHHHHHHHHHHHHCC-CCEEEEECC T ss_conf 999997999898889999999998689-938999657 No 343 >1xhc_A NADH oxidase /nitrite reductase; southeast collaboratory for structural genomics, secsg, hyperthermophIle; HET: FAD; 2.35A {Pyrococcus furiosus dsm 3638} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 Probab=40.12 E-value=18 Score=15.74 Aligned_cols=36 Identities=28% Similarity=0.431 Sum_probs=26.0 Q ss_pred CCCCEEEEECCCCCHHHHHHHHCCCCEEEEECCCCC Q ss_conf 999879997589882346775023525998425543 Q gi|254780398|r 46 LDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQ 81 (284) Q Consensus 46 ~~~~~VlEIGpG~G~LT~~Ll~~~~~~v~aiEiD~~ 81 (284) ..|..|+=||.|++.++-+..-+...+|+.||.++. T Consensus 6 ~~GkkVvIIG~G~AGl~aA~~l~~~~~Vtlie~~~~ 41 (367) T 1xhc_A 6 HHGSKVVIVGNGPGGFELAKQLSQTYEVTVIDKEPV 41 (367) T ss_dssp ---CEEEEECCSHHHHHHHHHHTTTSEEEEECSSSS T ss_pred CCCCEEEEECCCHHHHHHHHHHHCCCCEEEEECCCC T ss_conf 999969999998999999999707998999969886 No 344 >2zat_A Dehydrogenase/reductase SDR family member 4; alpha/beta, oxidoreductase; HET: NAP; 1.50A {Sus scrofa} PDB: 3o4r_A* Probab=40.02 E-value=18 Score=15.73 Aligned_cols=64 Identities=14% Similarity=0.080 Sum_probs=44.3 Q ss_pred CCCCCCEEEEECCCCC---HHHHHHHHCCCCEEEEECCCCCCHHHHHHHHHHHHCCCCCCHHHHCCCC Q ss_conf 9899987999758988---2346775023525998425543036887875322001220000000143 Q gi|254780398|r 44 GSLDGITVIEIGAGPG---NLTQMLLTLGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVD 108 (284) Q Consensus 44 ~~~~~~~VlEIGpG~G---~LT~~Ll~~~~~~v~aiEiD~~~~~~l~~~~~~~~~~~~ii~~Dal~~d 108 (284) ...+++.+|=.|.+.| ++.+.|++.++ +|+...++..-++.+.+.+.....++..+.+|..+.+ T Consensus 10 ~~L~gKvalVTGas~GIG~aia~~la~~Ga-~V~i~~r~~~~l~~~~~~l~~~g~~~~~~~~Dv~~~~ 76 (260) T 2zat_A 10 KPLENKVALVTASTDGIGLAIARRLAQDGA-HVVVSSRKQENVDRTVATLQGEGLSVTGTVCHVGKAE 76 (260) T ss_dssp CTTTTCEEEESSCSSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHHHHHTTCCEEEEECCTTCHH T ss_pred CCCCCCEEEEECCCCHHHHHHHHHHHHCCC-EEEEEECCHHHHHHHHHHHHHCCCCEEEEECCCCCHH T ss_conf 888999799927787899999999998799-9999979889999999998834983689976579999 No 345 >2cqg_A TDP-43, TAR DNA-binding protein-43; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1 Probab=40.01 E-value=9.1 Score=17.53 Aligned_cols=22 Identities=23% Similarity=0.324 Sum_probs=18.2 Q ss_pred EEEECCCHHHHHHHHHHHHHHH Q ss_conf 1120232246788999998520 Q gi|254780398|r 120 RIIANLPYNIGTRLLFNWISAD 141 (284) Q Consensus 120 ~vvgNLPYnIss~Il~~ll~~~ 141 (284) ..|+||||+++-.-|..++... T Consensus 18 lfV~nLp~~~te~~L~~~F~~~ 39 (103) T 2cqg_A 18 LIVLGLPWKTTEQDLKEYFSTF 39 (103) T ss_dssp EEEESCCSSCCHHHHHHHHGGG T ss_pred EEEECCCCCCCHHHHHHHHHHC T ss_conf 9997999989999999999724 No 346 >2cqd_A RNA-binding region containing protein 1; RNA recognition motif, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1 Probab=39.99 E-value=7.4 Score=18.11 Aligned_cols=21 Identities=19% Similarity=0.417 Sum_probs=17.7 Q ss_pred EEEECCCHHHHHHHHHHHHHH Q ss_conf 112023224678899999852 Q gi|254780398|r 120 RIIANLPYNIGTRLLFNWISA 140 (284) Q Consensus 120 ~vvgNLPYnIss~Il~~ll~~ 140 (284) ..||||||.++..=|..++.. T Consensus 20 lfV~nLp~~~te~~l~~~F~~ 40 (116) T 2cqd_A 20 IFVGGLPYHTTDASLRKYFEG 40 (116) T ss_dssp EEEECCCSSCCHHHHHHHHHT T ss_pred EEEECCCCCCCHHHHHHHHHH T ss_conf 999797998989999999998 No 347 >3md3_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RNP, RBD, poly(U) binding, tandem, acetylation, cytopla nucleus; 2.70A {Saccharomyces cerevisiae} Probab=39.90 E-value=11 Score=17.03 Aligned_cols=20 Identities=20% Similarity=0.248 Sum_probs=14.4 Q ss_pred EEEECCCHHHHHHHHHHHHH Q ss_conf 11202322467889999985 Q gi|254780398|r 120 RIIANLPYNIGTRLLFNWIS 139 (284) Q Consensus 120 ~vvgNLPYnIss~Il~~ll~ 139 (284) .+|+|||++++..-+..+.. T Consensus 90 l~v~nLp~~~~~~~l~~~f~ 109 (166) T 3md3_A 90 LFVGDLNVNVDDETLRNAFK 109 (166) T ss_dssp EEEESCCTTCCHHHHHHHHT T ss_pred CCCCCCCCCCCHHHHHHHHH T ss_conf 12443223452778877641 No 348 >2g4b_A Splicing factor U2AF 65 kDa subunit; protein-RNA complex, RNA splicing factor, RNA recognition motif, RNA binding protein/RNA complex; 2.50A {Homo sapiens} PDB: 2u2f_A Probab=39.84 E-value=7.4 Score=18.11 Aligned_cols=67 Identities=13% Similarity=0.116 Sum_probs=35.5 Q ss_pred CCHHHHCCCCHHHHCC--CCCCEEEEECCCHHHHHHHHHHHHHHHCCCCCC-------------CHHHHEEEHHHHHHHH Q ss_conf 0000000143155213--322201120232246788999998520100000-------------0110203344788753 Q gi|254780398|r 99 IIQDDALKVDFEKFFN--ISSPIRIIANLPYNIGTRLLFNWISADTWPPFW-------------ESLTLLFQKEVGERIT 163 (284) Q Consensus 99 ii~~Dal~~d~~~~~~--~~~~~~vvgNLPYnIss~Il~~ll~~~~~~~~~-------------~~~vlmvQkEvA~Rl~ 163 (284) +++|-.+++.+..... .......|+|||++++..-|..++........+ ...+-+-.+|.|++.. T Consensus 74 ~~~g~~l~v~~~~~~~~~~~~~~l~V~nL~~~~~e~~l~~~F~~~G~V~~v~i~~d~~~~~~kg~~fV~f~~~~~a~~Al 153 (172) T 2g4b_A 74 IFQGQSLKIRRPHDYQPLPGAHKLFIGGLPNYLNDDQVKELLTSFGPLKAFNLVKDSATGLSKGYAFCEYVDINVTDQAI 153 (172) T ss_dssp EETTEECEEECCSSCCCCTTTTCEEEECCCTTCCHHHHHHHHHTTSCEEEEEEEECTTTCSEEEEEEEEESSTTHHHHHH T ss_pred CCCCCCEEEEEECCCCCCCCCCEEEECCCCCCCCHHHHHHHHHHCCCCCEEEEEEECCCCCCCCEEEEEECCHHHHHHHH T ss_conf 12586117743012356777510140466678869999878865487743467775378871455999988999999999 Q ss_pred HC Q ss_conf 01 Q gi|254780398|r 164 AQ 165 (284) Q Consensus 164 a~ 165 (284) .. T Consensus 154 ~~ 155 (172) T 2g4b_A 154 AG 155 (172) T ss_dssp HH T ss_pred HH T ss_conf 98 No 349 >2ek1_A RNA-binding protein 12; RNA recognition motif, dimer, structural genomics, NPPSFA, national project on protein structural and functional analyses; 2.00A {Homo sapiens} PDB: 2ek6_A Probab=39.80 E-value=12 Score=16.75 Aligned_cols=23 Identities=9% Similarity=0.414 Sum_probs=18.4 Q ss_pred EEEEECCCHHHHHHHHHHHHHHH Q ss_conf 01120232246788999998520 Q gi|254780398|r 119 IRIIANLPYNIGTRLLFNWISAD 141 (284) Q Consensus 119 ~~vvgNLPYnIss~Il~~ll~~~ 141 (284) ...|+||||+++..=|..++... T Consensus 17 ~l~v~nLp~~~t~~dl~~~F~~~ 39 (95) T 2ek1_A 17 VIKVQNMPFTVSIDEILDFFYGY 39 (95) T ss_dssp EEEEECCCTTCCHHHHHHHTTTS T ss_pred EEEEECCCCCCCHHHHHHHHHCC T ss_conf 99997989989799999998525 No 350 >2o23_A HADH2 protein; HSD17B10, schad, ERAB, type II HADH, 2-methyl-3- hydroxybutyryl-COA dehydrogenase, MHBD; HET: NAD GOL; 1.20A {Homo sapiens} SCOP: c.2.1.2 PDB: 1so8_A 1u7t_A* 1e3s_A* 1e3w_B* 1e3w_A* 1e6w_A* Probab=39.59 E-value=18 Score=15.69 Aligned_cols=66 Identities=15% Similarity=0.189 Sum_probs=46.2 Q ss_pred HHHHCCCCCCCEEEEECCCCC---HHHHHHHHCCCCEEEEECCCCCCHHHHHHHHHHHHCCCCCCHHHHCCCC Q ss_conf 999719899987999758988---2346775023525998425543036887875322001220000000143 Q gi|254780398|r 39 IAESSGSLDGITVIEIGAGPG---NLTQMLLTLGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVD 108 (284) Q Consensus 39 iv~~~~~~~~~~VlEIGpG~G---~LT~~Ll~~~~~~v~aiEiD~~~~~~l~~~~~~~~~~~~ii~~Dal~~d 108 (284) |.......+++.+|=.|.+.| ++.+.|++.++ +|+.+.++..-.+.+.+. ..++...+.+|..+.+ T Consensus 3 m~~~~~~LkGKvalVTGas~GIG~aia~~la~~Ga-~Vv~~~r~~~~~~~~~~~---~~~~~~~~~~Dv~~~~ 71 (265) T 2o23_A 3 MAAACRSVKGLVAVITGGASGLGLATAERLVGQGA-SAVLLDLPNSGGEAQAKK---LGNNCVFAPADVTSEK 71 (265) T ss_dssp -----CCCTTCEEEEETTTSHHHHHHHHHHHHTTC-EEEEEECTTSSHHHHHHH---HCTTEEEEECCTTCHH T ss_pred CCCCCCCCCCCEEEEECCCCHHHHHHHHHHHHCCC-EEEEEECCHHHHHHHHHH---HCCCEEEEEEECCCHH T ss_conf 88678899999899928688899999999998799-899996886889999998---2896799981069999 No 351 >1hd0_A Protein (heterogeneous nuclear ribonucleoprotein D0); RNA-binding domain, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 1hd1_A Probab=39.49 E-value=11 Score=17.08 Aligned_cols=20 Identities=20% Similarity=0.393 Sum_probs=16.9 Q ss_pred EEECCCHHHHHHHHHHHHHH Q ss_conf 12023224678899999852 Q gi|254780398|r 121 IIANLPYNIGTRLLFNWISA 140 (284) Q Consensus 121 vvgNLPYnIss~Il~~ll~~ 140 (284) .|||||+++|..-|..+... T Consensus 3 fV~nLp~~~te~~l~~~F~~ 22 (75) T 1hd0_A 3 FIGGLSWDTTKKDLKDYFSK 22 (75) T ss_dssp EEECCCTTCCHHHHHHHHHT T ss_pred EEECCCCCCCHHHHHHHHHH T ss_conf 99089996989999999985 No 352 >1h2v_Z 20 kDa nuclear CAP binding protein; CAP-binding-complex, RNP domain, MIF4G domain, RNA maturation, RNA export, nuclear protein, RNA-binding; 2.0A {Homo sapiens} SCOP: d.58.7.1 PDB: 1h2u_X* 1h2t_Z 1n52_B* 1n54_B 3fex_B 3fey_B 1h6k_X Probab=39.40 E-value=14 Score=16.38 Aligned_cols=24 Identities=13% Similarity=0.242 Sum_probs=19.3 Q ss_pred CEEEEECCCHHHHHHHHHHHHHHH Q ss_conf 201120232246788999998520 Q gi|254780398|r 118 PIRIIANLPYNIGTRLLFNWISAD 141 (284) Q Consensus 118 ~~~vvgNLPYnIss~Il~~ll~~~ 141 (284) ...+|||||+.++..-|..++... T Consensus 40 ~tlfVgnLp~~~te~~L~~~F~~~ 63 (156) T 1h2v_Z 40 CTLYVGNLSFYTTEEQIYELFSKS 63 (156) T ss_dssp CEEEEESCCTTCCHHHHHHHHGGG T ss_pred CEEEEECCCCCCCHHHHHHHHHHH T ss_conf 889981999979899999999965 No 353 >2jwn_A Embryonic polyadenylate-binding protein 2-B; epabp2, poly(A) binding, structural genomics, protein structure initiative, PSI-2; NMR {Xenopus laevis} Probab=39.22 E-value=10 Score=17.20 Aligned_cols=23 Identities=17% Similarity=0.111 Sum_probs=18.9 Q ss_pred EEEEECCCHHHHHHHHHHHHHHH Q ss_conf 01120232246788999998520 Q gi|254780398|r 119 IRIIANLPYNIGTRLLFNWISAD 141 (284) Q Consensus 119 ~~vvgNLPYnIss~Il~~ll~~~ 141 (284) ...||||||+++..-|..++... T Consensus 38 tv~V~nLp~~~t~~~l~~~F~~~ 60 (124) T 2jwn_A 38 SVYVGNVDYGSTAQDLEAHFSSC 60 (124) T ss_dssp EEEEEEECTTCCHHHHHHHHHTT T ss_pred EEEEECCCCCCCHHHHHHHHHHH T ss_conf 89997969989899999999964 No 354 >2h1y_A Malonyl coenzyme A-acyl carrier protein transacylase; FABD, MCAT, transferase; 2.50A {Helicobacter pylori SS1} Probab=38.91 E-value=19 Score=15.62 Aligned_cols=13 Identities=23% Similarity=0.534 Sum_probs=8.9 Q ss_pred ECCCCCHHHHHHH Q ss_conf 7589882346775 Q gi|254780398|r 54 IGAGPGNLTQMLL 66 (284) Q Consensus 54 IGpG~G~LT~~Ll 66 (284) +|-..|-++-..+ T Consensus 101 ~GhSlGE~aA~~~ 113 (321) T 2h1y_A 101 LGHSLGEVSAVSL 113 (321) T ss_dssp EECTHHHHHHHHH T ss_pred EECCCCHHHHHHH T ss_conf 3258206899986 No 355 >1x5s_A Cold-inducible RNA-binding protein; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1 Probab=38.86 E-value=11 Score=16.98 Aligned_cols=21 Identities=14% Similarity=0.233 Sum_probs=17.5 Q ss_pred EEEECCCHHHHHHHHHHHHHH Q ss_conf 112023224678899999852 Q gi|254780398|r 120 RIIANLPYNIGTRLLFNWISA 140 (284) Q Consensus 120 ~vvgNLPYnIss~Il~~ll~~ 140 (284) ..||||||+++..-|..++.. T Consensus 15 lfV~nLp~~~te~~l~~~F~~ 35 (102) T 1x5s_A 15 LFVGGLSFDTNEQSLEQVFSK 35 (102) T ss_dssp EEEESCCTTCCHHHHHHHHHH T ss_pred EEEECCCCCCCHHHHHHHHHH T ss_conf 999799986879999998744 No 356 >1b7f_A Protein (SXL-lethal protein), RNA (5'-R(P*GP*UP*UP*GP*UP*UP*UP*UP*UP*UP*UP*U)- 3'); splicing regulation, RNP domain, RNA complex; 2.60A {Drosophila melanogaster} SCOP: d.58.7.1 d.58.7.1 PDB: 3sxl_A* 1sxl_A 2sxl_A Probab=38.77 E-value=11 Score=17.02 Aligned_cols=21 Identities=24% Similarity=0.241 Sum_probs=14.9 Q ss_pred EEEECCCHHHHHHHHHHHHHH Q ss_conf 112023224678899999852 Q gi|254780398|r 120 RIIANLPYNIGTRLLFNWISA 140 (284) Q Consensus 120 ~vvgNLPYnIss~Il~~ll~~ 140 (284) ..|+|||++++...|..++.. T Consensus 92 v~i~nl~~~~~e~~l~~~f~~ 112 (168) T 1b7f_A 92 LYVTNLPRTITDDQLDTIFGK 112 (168) T ss_dssp EEEESCCTTCCHHHHHHHHTS T ss_pred EEEECCCCCCCHHHHHHHHHH T ss_conf 999389986799999999976 No 357 >2qae_A Lipoamide, dihydrolipoyl dehydrogenase; FAD-cystine-oxidoreductase, homodimer; HET: FAD; 1.90A {Trypanosoma cruzi} Probab=38.70 E-value=19 Score=15.60 Aligned_cols=35 Identities=29% Similarity=0.341 Sum_probs=22.7 Q ss_pred CCEEEEECCCCCHHH--HHHHHCCCCEEEEECCCCCCH Q ss_conf 987999758988234--677502352599842554303 Q gi|254780398|r 48 GITVIEIGAGPGNLT--QMLLTLGARKVIVIEKDQQFF 83 (284) Q Consensus 48 ~~~VlEIGpG~G~LT--~~Ll~~~~~~v~aiEiD~~~~ 83 (284) .+.|+=||.|.-++- ..+.+.+ .+|+.||..+++. T Consensus 174 pk~v~ViGgG~ig~E~A~~l~~~G-~~Vtlver~~~lL 210 (468) T 2qae_A 174 PKTMVVIGGGVIGLELGSVWARLG-AEVTVVEFAPRCA 210 (468) T ss_dssp CSEEEEECCSHHHHHHHHHHHHTT-CEEEEECSSSSSS T ss_pred CCEEEEECCCHHHHHHHHHHHHCC-CEEEEEEECCCCC T ss_conf 997999998899999999999659-9499997277135 No 358 >2db1_A Heterogeneous nuclear ribonucleoprotein F; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} Probab=38.59 E-value=11 Score=16.98 Aligned_cols=22 Identities=18% Similarity=0.374 Sum_probs=17.6 Q ss_pred EEEEECCCHHHHHHHHHHHHHH Q ss_conf 0112023224678899999852 Q gi|254780398|r 119 IRIIANLPYNIGTRLLFNWISA 140 (284) Q Consensus 119 ~~vvgNLPYnIss~Il~~ll~~ 140 (284) ...|+||||++|-.=|..++.. T Consensus 19 ~v~v~nLP~~~te~dI~~~F~~ 40 (118) T 2db1_A 19 VVKLRGLPWSCSIEDVQNFLSD 40 (118) T ss_dssp EEEEESCCTTCCHHHHHHHTTT T ss_pred EEEEECCCCCCCHHHHHHHHHH T ss_conf 9999298985979999999874 No 359 >2bcg_G Secretory pathway GDP dissociation inhibitor; RABGTPase, geranylgeranylation, vesicular transport, protein transport; HET: GDP GER; 1.48A {Saccharomyces cerevisiae} SCOP: c.3.1.3 c.3.1.3 d.16.1.6 PDB: 1ukv_G* 3cpi_G 3cph_G 3cpj_G* Probab=38.52 E-value=16 Score=16.00 Aligned_cols=33 Identities=30% Similarity=0.467 Sum_probs=24.0 Q ss_pred CEEEEECCCCCHHHHH--HHHCCCCEEEEECCCCCC Q ss_conf 8799975898823467--750235259984255430 Q gi|254780398|r 49 ITVIEIGAGPGNLTQM--LLTLGARKVIVIEKDQQF 82 (284) Q Consensus 49 ~~VlEIGpG~G~LT~~--Ll~~~~~~v~aiEiD~~~ 82 (284) -.|+=||.|.+.|+-+ |+++| ++|+.+|..... T Consensus 12 yDviIIGaGl~Gl~~A~~La~~G-~kVlvlE~~~~~ 46 (453) T 2bcg_G 12 YDVIVLGTGITECILSGLLSVDG-KKVLHIDKQDHY 46 (453) T ss_dssp CSEEEECCSHHHHHHHHHHHHTT-CCEEEECSSSSS T ss_pred CCEEEECCCHHHHHHHHHHHHCC-CCEEEECCCCCC T ss_conf 78899895889999999999889-989998999998 No 360 >1ja9_A 4HNR, 1,3,6,8-tetrahydroxynaphthalene reductase; protein-NADPH-active site inhibitor complex, oxidoreductase, short chain dehydrogenase; HET: NDP PYQ; 1.50A {Magnaporthe grisea} SCOP: c.2.1.2 Probab=38.51 E-value=19 Score=15.59 Aligned_cols=64 Identities=23% Similarity=0.179 Sum_probs=44.3 Q ss_pred CCCCCCEEEEECCCCCH---HHHHHHHCCCCEEEE-ECCCCCCHHHHHHHHHHHHCCCCCCHHHHCCCC Q ss_conf 98999879997589882---346775023525998-425543036887875322001220000000143 Q gi|254780398|r 44 GSLDGITVIEIGAGPGN---LTQMLLTLGARKVIV-IEKDQQFFPILKDISSQHPNRLEIIQDDALKVD 108 (284) Q Consensus 44 ~~~~~~~VlEIGpG~G~---LT~~Ll~~~~~~v~a-iEiD~~~~~~l~~~~~~~~~~~~ii~~Dal~~d 108 (284) .+..|+.+|=-|.+.|. +.+.|++.+++ |+. .-.+.+..+.+.+.......++..+.+|+.+.+ T Consensus 17 ~pL~GKvalVTGas~GIG~aiA~~la~~Ga~-Vvi~~~~~~~~~~~~~~~l~~~g~~~~~~~~Dvs~~~ 84 (274) T 1ja9_A 17 KPLAGKVALTTGAGRGIGRGIAIELGRRGAS-VVVNYGSSSKAAEEVVAELKKLGAQGVAIQADISKPS 84 (274) T ss_dssp CTTTTCEEEETTTTSHHHHHHHHHHHHTTCE-EEEEESSCHHHHHHHHHHHHHTTCCEEEEECCTTSHH T ss_pred CCCCCCEEEEECCCCHHHHHHHHHHHHCCCE-EEEECCCCHHHHHHHHHHHHHCCCCEEEEECCCCCHH T ss_conf 8999998999688868999999999987998-9997289878999999999973995899982489999 No 361 >2fy1_A RNA-binding motif protein, Y chromosome, family 1 member A1; RNA binding protein, structure, protein-RNA complex, RNA stem-loop, structural protein/RNA complex; NMR {Homo sapiens} Probab=38.14 E-value=11 Score=16.94 Aligned_cols=21 Identities=14% Similarity=0.159 Sum_probs=18.0 Q ss_pred EEEECCCHHHHHHHHHHHHHH Q ss_conf 112023224678899999852 Q gi|254780398|r 120 RIIANLPYNIGTRLLFNWISA 140 (284) Q Consensus 120 ~vvgNLPYnIss~Il~~ll~~ 140 (284) ..|||||+++|.+-|..++.. T Consensus 10 lfV~nLp~~~te~~L~~~F~~ 30 (116) T 2fy1_A 10 LFIGGLNRETNEKMLKAVFGK 30 (116) T ss_dssp EEEECCTTTCCHHHHHHHHHT T ss_pred EEEECCCCCCCHHHHHHHHHH T ss_conf 999798998999999999987 No 362 >1nff_A Putative oxidoreductase RV2002; directed evolution, GFP, SDR, hydroxysteroid dehydrogenase, structural genomics, PSI; HET: NAD; 1.80A {Mycobacterium tuberculosis} SCOP: c.2.1.2 PDB: 1nfq_A* 1nfr_A* Probab=38.00 E-value=19 Score=15.54 Aligned_cols=61 Identities=16% Similarity=0.193 Sum_probs=42.3 Q ss_pred CCCCCCEEEEECCCCCH---HHHHHHHCCCCEEEEECCCCCCHHHHHHHHHHHHCCCCCCHHHHCCCC Q ss_conf 98999879997589882---346775023525998425543036887875322001220000000143 Q gi|254780398|r 44 GSLDGITVIEIGAGPGN---LTQMLLTLGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVD 108 (284) Q Consensus 44 ~~~~~~~VlEIGpG~G~---LT~~Ll~~~~~~v~aiEiD~~~~~~l~~~~~~~~~~~~ii~~Dal~~d 108 (284) +..+++.+|=.|.+.|. +.+.|++.++ +|+...+++.-.+.+.+ +..++...+.+|+.+.+ T Consensus 3 g~L~gK~alITGas~GIG~aia~~la~~Ga-~V~~~~r~~~~l~~~~~---el~~~~~~~~~Dv~~~~ 66 (260) T 1nff_A 3 GRLTGKVALVSGGARGMGASHVRAMVAEGA-KVVFGDILDEEGKAMAA---ELADAARYVHLDVTQPA 66 (260) T ss_dssp CTTTTCEEEEETTTSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHH---HTGGGEEEEECCTTCHH T ss_pred CCCCCCEEEEECCCCHHHHHHHHHHHHCCC-EEEEEECCHHHHHHHHH---HHCCCCEEEEEECCCHH T ss_conf 765989899948887899999999998799-99999798899999999---85187179998479999 No 363 >2ivd_A PPO, PPOX, protoporphyrinogen oxidase; porphyrin biosynthesis, chlorophyll biosynthesis, oxidoreductase, HAEM biosynthesis, heme biosynthesis; HET: ACJ FAD TWN; 2.3A {Myxococcus xanthus} SCOP: c.3.1.2 d.16.1.5 PDB: 2ive_A* Probab=37.53 E-value=17 Score=15.87 Aligned_cols=34 Identities=24% Similarity=0.509 Sum_probs=21.8 Q ss_pred CCEEEEECCCCCHHHHH--HHHCCCCEEEEECCCCCC Q ss_conf 98799975898823467--750235259984255430 Q gi|254780398|r 48 GITVIEIGAGPGNLTQM--LLTLGARKVIVIEKDQQF 82 (284) Q Consensus 48 ~~~VlEIGpG~G~LT~~--Ll~~~~~~v~aiEiD~~~ 82 (284) +..|+=||+|.+.||-+ |.+.+. +|+.+|...+. T Consensus 16 ~~~V~IIGaGiaGL~aA~~L~~~G~-~V~vlE~~~~~ 51 (478) T 2ivd_A 16 GMNVAVVGGGISGLAVAHHLRSRGT-DAVLLESSARL 51 (478) T ss_dssp -CCEEEECCBHHHHHHHHHHHTTTC-CEEEECSSSSS T ss_pred CCCEEEECCCHHHHHHHHHHHHCCC-CEEEECCCCCC T ss_conf 9998998987899999999985899-88999079988 No 364 >3ek2_A Enoyl-(acyl-carrier-protein) reductase (NADH); ssgcid, oxidoreductase, structural genomics; 1.90A {Burkholderia pseudomallei 1710B} Probab=37.53 E-value=19 Score=15.49 Aligned_cols=64 Identities=14% Similarity=0.189 Sum_probs=44.6 Q ss_pred CCCCCCCEEEEEC--C--CCC-HHHHHHHHCCCCEEEEECCCCCCHHHHHHHHHHHHCCCCCCHHHHCCCC Q ss_conf 1989998799975--8--988-2346775023525998425543036887875322001220000000143 Q gi|254780398|r 43 SGSLDGITVIEIG--A--GPG-NLTQMLLTLGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVD 108 (284) Q Consensus 43 ~~~~~~~~VlEIG--p--G~G-~LT~~Ll~~~~~~v~aiEiD~~~~~~l~~~~~~~~~~~~ii~~Dal~~d 108 (284) .+..+++.+|=-| . |.| ++.+.+++.++ +|+...++.+..+.+.+...... +...+.+|+.+.+ T Consensus 9 M~~L~gK~alITGaa~s~GIG~aiA~~la~~Ga-~V~~~~~~~~~~~~~~~~~~~~~-~~~~~~~Dv~d~~ 77 (271) T 3ek2_A 9 MGFLDGKRILLTGLLSNRSIAYGIAKACKREGA-ELAFTYVGDRFKDRITEFAAEFG-SELVFPCDVADDA 77 (271) T ss_dssp CCTTTTCEEEECCCCSTTSHHHHHHHHHHHTTC-EEEEEESSGGGHHHHHHHHHHTT-CCCEEECCTTCHH T ss_pred CCCCCCCEEEEECCCCCCHHHHHHHHHHHHCCC-EEEEEECCHHHHHHHHHHHHHCC-CEEEEEEECCCHH T ss_conf 567479989998998760899999999998699-99999588788999999997449-7389997338879 No 365 >2e5i_A Heterogeneous nuclear ribonucleoprotein L-like; RRM domain, RBD, structural genomics, NPPSFA; NMR {Mus musculus} Probab=37.43 E-value=11 Score=17.11 Aligned_cols=20 Identities=25% Similarity=0.328 Sum_probs=17.1 Q ss_pred EEECCCHHHHHHHHHHHHHH Q ss_conf 12023224678899999852 Q gi|254780398|r 121 IIANLPYNIGTRLLFNWISA 140 (284) Q Consensus 121 vvgNLPYnIss~Il~~ll~~ 140 (284) +|.||||.||...|..+... T Consensus 29 ~v~Nl~~~vt~~~L~~lF~~ 48 (124) T 2e5i_A 29 SIQNPLYPITVDVLYTVCNP 48 (124) T ss_dssp EEESCCSCCCHHHHHHHHTT T ss_pred EECCCCCCCCHHHHHHHHHH T ss_conf 97498997899999999987 No 366 >1wg5_A Heterogeneous nuclear ribonucleoprotein H; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: d.58.7.1 Probab=37.33 E-value=13 Score=16.63 Aligned_cols=23 Identities=13% Similarity=0.329 Sum_probs=18.2 Q ss_pred CEEEEECCCHHHHHHHHHHHHHH Q ss_conf 20112023224678899999852 Q gi|254780398|r 118 PIRIIANLPYNIGTRLLFNWISA 140 (284) Q Consensus 118 ~~~vvgNLPYnIss~Il~~ll~~ 140 (284) .+..|+||||+.+-.=|..++.. T Consensus 16 ~~v~v~nLP~~~te~dI~~~F~~ 38 (104) T 1wg5_A 16 GFVRLRGLPFGCSKEEIVQFFSG 38 (104) T ss_dssp CEEEEESCCTTCCHHHHHHHTTT T ss_pred CEEEEECCCCCCCHHHHHHHHHH T ss_conf 88999799987999999999877 No 367 >2dgx_A KIAA0430 protein; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1 Probab=37.29 E-value=16 Score=16.07 Aligned_cols=21 Identities=14% Similarity=0.286 Sum_probs=14.9 Q ss_pred CEEEEECCCHHHHHHHHHHHH Q ss_conf 201120232246788999998 Q gi|254780398|r 118 PIRIIANLPYNIGTRLLFNWI 138 (284) Q Consensus 118 ~~~vvgNLPYnIss~Il~~ll 138 (284) ....||||||++|-.=|..++ T Consensus 10 ~~i~V~NL~~~~t~~el~~~l 30 (96) T 2dgx_A 10 ADVQVSNIDYRLSRKELQQLL 30 (96) T ss_dssp EEEEEESCCTTSCHHHHHHHH T ss_pred CEEEEECCCCCCCHHHHHHHH T ss_conf 899998899986856876656 No 368 >1fje_B Nucleolin RBD12, protein C23; RNP, RRM, RNA binding domain, RNA-protein complex, nucleolus, structural protein/RNA complex; NMR {Mesocricetus auratus} SCOP: d.58.7.1 d.58.7.1 PDB: 1rkj_A 2krr_A Probab=37.28 E-value=16 Score=16.07 Aligned_cols=21 Identities=33% Similarity=0.067 Sum_probs=14.4 Q ss_pred EEEEECCCHHHHHHHHHHHHH Q ss_conf 011202322467889999985 Q gi|254780398|r 119 IRIIANLPYNIGTRLLFNWIS 139 (284) Q Consensus 119 ~~vvgNLPYnIss~Il~~ll~ 139 (284) ...|||||+++|..-|..++. T Consensus 15 ~vfV~nLp~~~t~~~l~~~f~ 35 (175) T 1fje_B 15 NLFIGNLNPNKSVAELKVAIS 35 (175) T ss_dssp EEEEECCCTTSCHHHHHHHHH T ss_pred EEEEECCCCCCCHHHHHHHHH T ss_conf 899908998688999999999 No 369 >1xq1_A Putative tropinone reducatse; structural genomics, protein structure initiative, CESG, AT1G07440, reductively methylated protein; 2.10A {Arabidopsis thaliana} SCOP: c.2.1.2 PDB: 2q45_A Probab=37.17 E-value=20 Score=15.45 Aligned_cols=62 Identities=15% Similarity=0.059 Sum_probs=41.7 Q ss_pred CCCCEEEEECCCCCH---HHHHHHHCCCCEEEEECCCCCCHHHHHHHHHHHHCCCCCCHHHHCCCC Q ss_conf 999879997589882---346775023525998425543036887875322001220000000143 Q gi|254780398|r 46 LDGITVIEIGAGPGN---LTQMLLTLGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVD 108 (284) Q Consensus 46 ~~~~~VlEIGpG~G~---LT~~Ll~~~~~~v~aiEiD~~~~~~l~~~~~~~~~~~~ii~~Dal~~d 108 (284) .+++.+|=.|.+.|. +.+.+++.++ +|+.+.++..-.+.+.+.......++..+.+|+.+.+ T Consensus 12 L~gK~alITGas~GIG~aiA~~la~~Ga-~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~Dv~~~~ 76 (266) T 1xq1_A 12 LKAKTVLVTGGTKGIGHAIVEEFAGFGA-VIHTCARNEYELNECLSKWQKKGFQVTGSVCDASLRP 76 (266) T ss_dssp CTTCEEEETTTTSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHHHHHTTCCEEEEECCTTSHH T ss_pred CCCCEEEEECCCCHHHHHHHHHHHHCCC-EEEEEECCHHHHHHHHHHHHHCCCEEEEEECCCCCHH T ss_conf 9999899927986899999999998799-9999979999999999998732980899985689999 No 370 >2cpy_A RNA-binding protein 12; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1 Probab=37.15 E-value=13 Score=16.56 Aligned_cols=22 Identities=18% Similarity=0.453 Sum_probs=17.6 Q ss_pred EEEEECCCHHHHHHHHHHHHHH Q ss_conf 0112023224678899999852 Q gi|254780398|r 119 IRIIANLPYNIGTRLLFNWISA 140 (284) Q Consensus 119 ~~vvgNLPYnIss~Il~~ll~~ 140 (284) ...|+||||+++..=|..++.. T Consensus 17 ~v~v~nLp~~~t~~di~~~F~~ 38 (114) T 2cpy_A 17 CAHITNIPFSITKMDVLQFLEG 38 (114) T ss_dssp EEEEESCCTTSCHHHHHHHTTT T ss_pred EEEEECCCCCCCHHHHHHHHHH T ss_conf 8999699998989999999887 No 371 >2bgk_A Rhizome secoisolariciresinol dehydrogenase; oxidoreductase; 1.6A {Podophyllum peltatum} SCOP: c.2.1.2 PDB: 2bgl_A* 2bgm_A* Probab=37.14 E-value=20 Score=15.45 Aligned_cols=63 Identities=17% Similarity=0.299 Sum_probs=43.4 Q ss_pred CCCCCCEEEEECCCCC---HHHHHHHHCCCCEEEEECCCCCCHHHHHHHHHHHHCCCCCCHHHHCCCC Q ss_conf 9899987999758988---2346775023525998425543036887875322001220000000143 Q gi|254780398|r 44 GSLDGITVIEIGAGPG---NLTQMLLTLGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVD 108 (284) Q Consensus 44 ~~~~~~~VlEIGpG~G---~LT~~Ll~~~~~~v~aiEiD~~~~~~l~~~~~~~~~~~~ii~~Dal~~d 108 (284) +..+++.+|=-|.+.| ++.+.|++.++ +|+...++..-.+.+.+.... .+++..+.+|+.+.+ T Consensus 12 ~rL~gKvalVTGas~GIG~aiA~~la~~Ga-~V~i~~r~~~~~~~~~~~~~~-~~~~~~~~~Dvt~~~ 77 (278) T 2bgk_A 12 NRLQDKVAIITGGAGGIGETTAKLFVRYGA-KVVIADIADDHGQKVCNNIGS-PDVISFVHCDVTKDE 77 (278) T ss_dssp CTTTTCEEEEESTTSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHHHCC-TTTEEEEECCTTCHH T ss_pred CCCCCCEEEEECCCCHHHHHHHHHHHHCCC-EEEEEECCHHHHHHHHHHHCC-CCCEEEEECCCCCHH T ss_conf 777999899948687899999999998799-899997988999999998358-996799985789999 No 372 >2pd4_A Enoyl-[acyl-carrier-protein] reductase [NADH]; antibacterial target, type II fatty acid biosynthesis, enoyl-ACP-reductase, FABI; HET: NAD DCN; 2.30A {Helicobacter pylori} SCOP: c.2.1.2 PDB: 2pd3_A* Probab=37.12 E-value=20 Score=15.45 Aligned_cols=63 Identities=16% Similarity=0.202 Sum_probs=43.9 Q ss_pred CCCCCCEEEEECC-C-CC---HHHHHHHHCCCCEEEEECCCCCCHHHHHHHHHHHHCCCCCCHHHHCCCC Q ss_conf 9899987999758-9-88---2346775023525998425543036887875322001220000000143 Q gi|254780398|r 44 GSLDGITVIEIGA-G-PG---NLTQMLLTLGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVD 108 (284) Q Consensus 44 ~~~~~~~VlEIGp-G-~G---~LT~~Ll~~~~~~v~aiEiD~~~~~~l~~~~~~~~~~~~ii~~Dal~~d 108 (284) +..+++.+|=.|+ | .| ++.+.+++.++ +|+...+++...+.+++...... ....+.+|....+ T Consensus 2 ~~L~gK~alITGaag~~GIG~aiA~~la~~G~-~V~i~~r~~~~~~~~~~~~~~~~-~~~~~~~d~~~~~ 69 (275) T 2pd4_A 2 GFLKGKKGLIVGVANNKSIAYGIAQSCFNQGA-TLAFTYLNESLEKRVRPIAQELN-SPYVYELDVSKEE 69 (275) T ss_dssp CTTTTCEEEEECCCSTTSHHHHHHHHHHTTTC-EEEEEESSTTTHHHHHHHHHHTT-CCCEEECCTTCHH T ss_pred CCCCCCEEEEECCCCCCHHHHHHHHHHHHCCC-EEEEEECCHHHHHHHHHHHHHCC-CCEEEEEECCCHH T ss_conf 88799889998999984899999999998799-99999688799999999985368-8359984145378 No 373 >1x4c_A Splicing factor, arginine/serine-rich 1; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1 Probab=37.08 E-value=12 Score=16.83 Aligned_cols=22 Identities=14% Similarity=0.108 Sum_probs=18.4 Q ss_pred EEEEECCCHHHHHHHHHHHHHH Q ss_conf 0112023224678899999852 Q gi|254780398|r 119 IRIIANLPYNIGTRLLFNWISA 140 (284) Q Consensus 119 ~~vvgNLPYnIss~Il~~ll~~ 140 (284) ...|+|||++++.+-|..++.. T Consensus 17 ~l~V~nlp~~~t~~~L~~~F~~ 38 (108) T 1x4c_A 17 RVVVSGLPPSGSWQDLKDHMRE 38 (108) T ss_dssp EEEEESCCSSCCHHHHHHHHGG T ss_pred EEEEECCCCCCHHHHHHHHHHH T ss_conf 9999779998609999999843 No 374 >1wel_A RNA-binding protein 12; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1 Probab=37.04 E-value=14 Score=16.47 Aligned_cols=22 Identities=9% Similarity=0.389 Sum_probs=17.9 Q ss_pred EEEEECCCHHHHHHHHHHHHHH Q ss_conf 0112023224678899999852 Q gi|254780398|r 119 IRIIANLPYNIGTRLLFNWISA 140 (284) Q Consensus 119 ~~vvgNLPYnIss~Il~~ll~~ 140 (284) ...|+||||+++-.=|..++.. T Consensus 27 ~i~v~nLp~~~te~dl~~~F~~ 48 (124) T 1wel_A 27 CVYLKGLPFEAENKHVIDFFKK 48 (124) T ss_dssp EEEEECCCTTCCHHHHHHHSCS T ss_pred EEEEECCCCCCCHHHHHHHHHC T ss_conf 9999798984959998768871 No 375 >2dgo_A Cytotoxic granule-associated RNA binding protein 1; RRM domain, structural genomics, NPPSFA; NMR {Mus musculus} PDB: 2rne_A 2dh7_A Probab=36.92 E-value=13 Score=16.51 Aligned_cols=21 Identities=14% Similarity=0.110 Sum_probs=17.7 Q ss_pred EEEECCCHHHHHHHHHHHHHH Q ss_conf 112023224678899999852 Q gi|254780398|r 120 RIIANLPYNIGTRLLFNWISA 140 (284) Q Consensus 120 ~vvgNLPYnIss~Il~~ll~~ 140 (284) ..||||||.++-.-|..++.. T Consensus 18 lfV~nLp~~~te~~L~~~F~~ 38 (115) T 2dgo_A 18 VFVGDLSPEITTEDIKAAFAP 38 (115) T ss_dssp EEEESCCTTCCHHHHHHHHGG T ss_pred EEEECCCCCCCHHHHHHHHHH T ss_conf 999799998899999999860 No 376 >2dh8_A DAZ-associated protein 1; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Probab=36.83 E-value=9.7 Score=17.38 Aligned_cols=21 Identities=14% Similarity=0.276 Sum_probs=17.8 Q ss_pred EEEECCCHHHHHHHHHHHHHH Q ss_conf 112023224678899999852 Q gi|254780398|r 120 RIIANLPYNIGTRLLFNWISA 140 (284) Q Consensus 120 ~vvgNLPYnIss~Il~~ll~~ 140 (284) ..||||||.++-.-|..++.. T Consensus 19 ifV~nLp~~~te~~l~~~F~~ 39 (105) T 2dh8_A 19 LFVGGLDWSTTQETLRSYFSQ 39 (105) T ss_dssp ECCBSCCTTCCHHHHHHHHHT T ss_pred EEEECCCCCCCHHHHHHHHHH T ss_conf 999499998859999867760 No 377 >1wg1_A KIAA1579 protein, homolog EXC-7; RBD, structural genomics, riken structural genomics/proteomics initiative, RSGI, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 1wi6_A Probab=36.82 E-value=11 Score=17.12 Aligned_cols=23 Identities=13% Similarity=0.255 Sum_probs=18.2 Q ss_pred CEEEEECCCHHHHHHHHHHHHHH Q ss_conf 20112023224678899999852 Q gi|254780398|r 118 PIRIIANLPYNIGTRLLFNWISA 140 (284) Q Consensus 118 ~~~vvgNLPYnIss~Il~~ll~~ 140 (284) ....|||||+++|.+=|..++.. T Consensus 6 ~~i~V~nlp~~~t~~~l~~lF~~ 28 (88) T 1wg1_A 6 SGILVKNLPQDSNCQEVHDLLKD 28 (88) T ss_dssp CCEEEESCCSSCCHHHHHHHTCS T ss_pred CEEEEECCCCCCCHHHHHHHHHH T ss_conf 89999799999999999999974 No 378 >2mss_A Protein (musashi1); RNA-binding domain, RNA binding protein; NMR {Mus musculus} SCOP: d.58.7.1 PDB: 2mst_A Probab=36.79 E-value=12 Score=16.90 Aligned_cols=21 Identities=10% Similarity=0.115 Sum_probs=17.4 Q ss_pred EEECCCHHHHHHHHHHHHHHH Q ss_conf 120232246788999998520 Q gi|254780398|r 121 IIANLPYNIGTRLLFNWISAD 141 (284) Q Consensus 121 vvgNLPYnIss~Il~~ll~~~ 141 (284) .|||||++++-.-|..++... T Consensus 3 fV~nLp~~~t~~~l~~~f~~~ 23 (75) T 2mss_A 3 FVGGLSVNTTVEDVKHYFEQF 23 (75) T ss_dssp EEECCCSSCCHHHHHHHHHTT T ss_pred EEECCCCCCCHHHHHHHHHHH T ss_conf 993899989899999998871 No 379 >3iei_A Leucine carboxyl methyltransferase 1; LCMT-1, S-adenosyl-L-methionine; HET: SAH MES; 1.90A {Homo sapiens} PDB: 3mnt_A* Probab=36.47 E-value=20 Score=15.39 Aligned_cols=41 Identities=17% Similarity=0.059 Sum_probs=30.0 Q ss_pred CCEEEEECCCCCHHHHHHHHCCCCEEEEECCCCCCHHHHHH Q ss_conf 98799975898823467750235259984255430368878 Q gi|254780398|r 48 GITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKD 88 (284) Q Consensus 48 ~~~VlEIGpG~G~LT~~Ll~~~~~~v~aiEiD~~~~~~l~~ 88 (284) ..-|+-+|+|.-.+--.|...+...+..+|+|-.-+-..|. T Consensus 91 ~~QVV~LGaG~DTr~~RL~~~~~~~~~~~EvD~p~v~~~K~ 131 (334) T 3iei_A 91 HCQIVNLGAGMDTTFWRLKDEDLLSSKYFEVDFPMIVTRKL 131 (334) T ss_dssp CSEEEEETCTTCCHHHHHHHTTCCCSEEEEEECHHHHHHHH T ss_pred CCEEEEECCCCCCHHHHHCCCCCCCCEEEECCCHHHHHHHH T ss_conf 86799958776563555066668997699788789999999 No 380 >1fcd_A Flavocytochrome C sulfide dehydrogenase (flavin- binding subunit); electron transport(flavocytochrome); HET: FAD HEM; 2.53A {Allochromatium vinosum} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 Probab=35.94 E-value=21 Score=15.33 Aligned_cols=64 Identities=19% Similarity=0.439 Sum_probs=37.9 Q ss_pred CCCEEEEECCCCCHHHHH--HHHCCCC-EEEEECCCCCCH--HHHHHH-------------HHH-HHCCCCCCHHHHCCC Q ss_conf 998799975898823467--7502352-599842554303--688787-------------532-200122000000014 Q gi|254780398|r 47 DGITVIEIGAGPGNLTQM--LLTLGAR-KVIVIEKDQQFF--PILKDI-------------SSQ-HPNRLEIIQDDALKV 107 (284) Q Consensus 47 ~~~~VlEIGpG~G~LT~~--Ll~~~~~-~v~aiEiD~~~~--~~l~~~-------------~~~-~~~~~~ii~~Dal~~ 107 (284) .|+.|+=||.|.+.||-+ |.+.++. +|+.||..+.+. ..+... +.. .+..++++++-+..+ T Consensus 1 ~gKkVVIvGgG~AGl~aA~~L~~~~~~~~VtlId~~~~~~~~p~~~~v~~g~~~~~~~~~~~~~l~~~gi~~i~~~v~~I 80 (401) T 1fcd_A 1 AGRKVVVVGGGTGGATAAKYIKLADPSIEVTLIEPNTDYYTCYLSNEVIGGDRKLESIKHGYDGLRAHGIQVVHDSATGI 80 (401) T ss_dssp CCCEEEEECCSHHHHHHHHHHHHHCTTSEEEEECSCSCEECSTTHHHHHHTSSCGGGGEECSHHHHTTTEEEECCCEEEC T ss_pred CCCEEEEECCHHHHHHHHHHHHCCCCCCCEEEEECCCCCCCCCCHHHHHCCCCCHHHHHCCHHHHHHCCCEEEEEEEEEE T ss_conf 93819999971999999999970294896899938988705113899973878899950699999878989995458999 Q ss_pred CHH Q ss_conf 315 Q gi|254780398|r 108 DFE 110 (284) Q Consensus 108 d~~ 110 (284) |.. T Consensus 81 D~~ 83 (401) T 1fcd_A 81 DPD 83 (401) T ss_dssp CTT T ss_pred ECC T ss_conf 756 No 381 >2dnn_A RNA-binding protein 12; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Probab=35.86 E-value=8.7 Score=17.66 Aligned_cols=23 Identities=4% Similarity=0.145 Sum_probs=18.0 Q ss_pred CEEEEECCCHHHHHHHHHHHHHH Q ss_conf 20112023224678899999852 Q gi|254780398|r 118 PIRIIANLPYNIGTRLLFNWISA 140 (284) Q Consensus 118 ~~~vvgNLPYnIss~Il~~ll~~ 140 (284) ....|+||||+++-.=|..++.. T Consensus 17 ~~v~v~nLp~~~te~~i~~~F~~ 39 (109) T 2dnn_A 17 LYVSVHGMPFSAMENDVRDFFHG 39 (109) T ss_dssp HEEEEECCCSSCCHHHHHHHTTT T ss_pred CEEEEECCCCCCCHHHHHHHHCC T ss_conf 99999799986989999998545 No 382 >2dnl_A Cytoplasmic polyadenylation element binding protein 3; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens} Probab=35.74 E-value=11 Score=17.01 Aligned_cols=21 Identities=14% Similarity=0.189 Sum_probs=17.9 Q ss_pred EEEECCCHHHHHHHHHHHHHH Q ss_conf 112023224678899999852 Q gi|254780398|r 120 RIIANLPYNIGTRLLFNWISA 140 (284) Q Consensus 120 ~vvgNLPYnIss~Il~~ll~~ 140 (284) ..||||||++|-.-|..++.. T Consensus 11 vfVgnLp~~~te~~L~~~F~~ 31 (114) T 2dnl_A 11 VFVGGLPPDIDEDEITASFRR 31 (114) T ss_dssp EEEECCCTTCCHHHHHHHTTT T ss_pred EEECCCCCCCCHHHHHHHHHH T ss_conf 999099976587899999985 No 383 >1yvv_A Amine oxidase, flavin-containing; oxidoreductase, PSR10, Q888A4, X-RAY, structure, PSI, protein structure initiative; HET: FAD; 2.50A {Pseudomonas syringae} PDB: 3kkj_A* Probab=35.73 E-value=16 Score=15.99 Aligned_cols=32 Identities=22% Similarity=0.338 Sum_probs=24.6 Q ss_pred EEEEECCCCCHHHHHH--HHCCCCEEEEECCCCCC Q ss_conf 7999758988234677--50235259984255430 Q gi|254780398|r 50 TVIEIGAGPGNLTQML--LTLGARKVIVIEKDQQF 82 (284) Q Consensus 50 ~VlEIGpG~G~LT~~L--l~~~~~~v~aiEiD~~~ 82 (284) .|+=||+|+..||-++ .+.+. .|+.+|..+.. T Consensus 4 dV~IVGaGpaGL~~A~~La~~G~-~V~viEk~~~~ 37 (336) T 1yvv_A 4 PIAIIGTGIAGLSAAQALTAAGH-QVHLFDKSRGS 37 (336) T ss_dssp CEEEECCSHHHHHHHHHHHHTTC-CEEEECSSSSS T ss_pred CEEEECCCHHHHHHHHHHHHCCC-CEEEEECCCCC T ss_conf 79998947999999999997899-78999798999 No 384 >1fj7_A Nucleolin RBD1, protein C23; RNP, RRM, RNA binding domain, nucleolus, structural protein; NMR {Mesocricetus auratus} SCOP: d.58.7.1 Probab=35.73 E-value=13 Score=16.51 Aligned_cols=22 Identities=32% Similarity=0.064 Sum_probs=17.7 Q ss_pred EEEEECCCHHHHHHHHHHHHHH Q ss_conf 0112023224678899999852 Q gi|254780398|r 119 IRIIANLPYNIGTRLLFNWISA 140 (284) Q Consensus 119 ~~vvgNLPYnIss~Il~~ll~~ 140 (284) ...||||||++|..-|..++.. T Consensus 19 ~ifV~nLp~~~te~~L~~~F~~ 40 (101) T 1fj7_A 19 NLFIGNLNPNKSVAELKVAISE 40 (101) T ss_dssp EEEEECCCTTSCHHHHHHHHHH T ss_pred EEEEECCCCCCCHHHHHHHHHC T ss_conf 9999798877708998866642 No 385 >2qy6_A UPF0209 protein YFCK; structural genomics, unknown function, PSI-2, protein structure initiative; 2.00A {Escherichia coli O157} Probab=35.66 E-value=21 Score=15.31 Aligned_cols=70 Identities=17% Similarity=0.024 Sum_probs=37.2 Q ss_pred CCCCCCCCCCCHHHHH----HHHHHCC------CCCC--CEEEEECCCCCHHHHHHHH------------CCC-CEEEEE Q ss_conf 3365841123989999----9999719------8999--8799975898823467750------------235-259984 Q gi|254780398|r 22 KKYMGQNFLLDLNILK----KIAESSG------SLDG--ITVIEIGAGPGNLTQMLLT------------LGA-RKVIVI 76 (284) Q Consensus 22 ~k~lGQnFL~d~~i~~----~iv~~~~------~~~~--~~VlEIGpG~G~LT~~Ll~------------~~~-~~v~ai 76 (284) ...+|++|--..+.+. ..++..+ -.++ -+|+|||-|+|-=....++ +.. -+++++ T Consensus 23 s~~f~e~YhS~~ga~~Es~~vFi~~~~L~~r~~~~~~~~~~IlEiGFG~GlNfl~t~~~~~~~~~~~~~~~~~~L~yisi 102 (257) T 2qy6_A 23 SRDFDDVYFSNDNGLEETRYVFLGGNQLEARFPEHPHPLFVVAESGFGTGLNFLTLWQAFDQFREAHPQAQLQRLHFISF 102 (257) T ss_dssp ETTTTEESSCTTTHHHHHHHHHHHHTTHHHHGGGCSSSEEEEEESCCTTSHHHHHHHHHHHHHHHHCTTSSCCEEEEEEE T ss_pred CCCCCCCCCCCCCHHHHHHHHHHCCCCCHHHHHCCCCCCEEEEEECCCCHHHHHHHHHHHHHHHHHCCCCCCEEEEEEEE T ss_conf 78769746798779999999723669986988639988549999478610899999999997434265554127999961 Q ss_pred CCCCCCHHHHHHHHH Q ss_conf 255430368878753 Q gi|254780398|r 77 EKDQQFFPILKDISS 91 (284) Q Consensus 77 EiD~~~~~~l~~~~~ 91 (284) |.++--.+.+.+... T Consensus 103 E~~Pl~~~~l~~~~~ 117 (257) T 2qy6_A 103 EKFPLTRADLALAHQ 117 (257) T ss_dssp ESSCCCHHHHHHHHT T ss_pred CCCCCCHHHHHHHHH T ss_conf 577766778876541 No 386 >2hgm_A HNRPF protein, heterogeneous nuclear ribonucleoprotein F; RNA recognition motif, G-tract, G-quadruplex, alternative splicing, RNA binding protein; NMR {Homo sapiens} PDB: 2kg0_A Probab=35.66 E-value=14 Score=16.36 Aligned_cols=24 Identities=13% Similarity=0.239 Sum_probs=18.9 Q ss_pred CEEEEECCCHHHHHHHHHHHHHHH Q ss_conf 201120232246788999998520 Q gi|254780398|r 118 PIRIIANLPYNIGTRLLFNWISAD 141 (284) Q Consensus 118 ~~~vvgNLPYnIss~Il~~ll~~~ 141 (284) ....|+||||+.+..-|..++... T Consensus 43 ~~v~V~nLP~~~te~di~~~F~~~ 66 (126) T 2hgm_A 43 GFVRLRGLPFGCTKEEIVQFFSGL 66 (126) T ss_dssp CEEEEECCCTTCCHHHHHHHTTTS T ss_pred CEEEEECCCCCCCHHHHHHHHHHC T ss_conf 899993569989899999998555 No 387 >1rsg_A FMS1 protein; FAD binding motif, oxidoreductase; HET: FAD; 1.90A {Saccharomyces cerevisiae} PDB: 1z6l_A* 3bi2_A* 3bi4_A* 3bi5_A* 3bnm_B* 3bnu_B* 3cn8_B* 3cnd_B* 3cnp_B* 3cns_A* 3cnt_B* 1yy5_A* 1xpq_A* Probab=35.57 E-value=17 Score=15.80 Aligned_cols=34 Identities=32% Similarity=0.436 Sum_probs=20.2 Q ss_pred CCEEEEECCCCCHHH--HHHHHCCCCEEEEECCCCC Q ss_conf 987999758988234--6775023525998425543 Q gi|254780398|r 48 GITVIEIGAGPGNLT--QMLLTLGARKVIVIEKDQQ 81 (284) Q Consensus 48 ~~~VlEIGpG~G~LT--~~Ll~~~~~~v~aiEiD~~ 81 (284) ...|+=||+|...|+ ..|.+.+.+.|+.+|-..+ T Consensus 8 ~k~V~IIGaG~aGL~aA~~L~~~G~~~V~VlEA~~r 43 (516) T 1rsg_A 8 KKKVIIIGAGIAGLKAASTLHQNGIQDCLVLEARDR 43 (516) T ss_dssp EEEEEEECCBHHHHHHHHHHHHTTCCSEEEECSSSS T ss_pred CCCEEEECCCHHHHHHHHHHHHCCCCCEEEEECCCC T ss_conf 798899897889999999998679997899968998 No 388 >1no8_A ALY; RBD, REF1-I, BEF, mRNA export factor, RNA binding protein; NMR {Mus musculus} SCOP: d.58.7.1 Probab=35.53 E-value=13 Score=16.52 Aligned_cols=22 Identities=9% Similarity=0.255 Sum_probs=17.4 Q ss_pred EEEEECCCHHHHHHHHHHHHHH Q ss_conf 0112023224678899999852 Q gi|254780398|r 119 IRIIANLPYNIGTRLLFNWISA 140 (284) Q Consensus 119 ~~vvgNLPYnIss~Il~~ll~~ 140 (284) -.+|+||||+++..=|..++.. T Consensus 30 ~l~V~nLp~~~~~~~l~~~F~~ 51 (106) T 1no8_A 30 KLLVSNLDFGVSDADIQELFAE 51 (106) T ss_dssp EEEEESCCTTCCHHHHHHHHHH T ss_pred EEEEECCCCCCCHHHHHHHHHH T ss_conf 9999897997889999999987 No 389 >3p5t_L Cleavage and polyadenylation specificity factor S; RRM domain, poly(A) site recognition, RNA, nuclear, RNA BIND protein; 2.70A {Homo sapiens} PDB: 3p6y_C Probab=35.51 E-value=13 Score=16.51 Aligned_cols=21 Identities=19% Similarity=0.126 Sum_probs=17.0 Q ss_pred EEEECCCHHHHHHHHHHHHHH Q ss_conf 112023224678899999852 Q gi|254780398|r 120 RIIANLPYNIGTRLLFNWISA 140 (284) Q Consensus 120 ~vvgNLPYnIss~Il~~ll~~ 140 (284) ..|||||+++|-.=|..++.. T Consensus 4 lfV~nLp~~~te~~l~~~F~~ 24 (90) T 3p5t_L 4 LYIGNLTWWTTDEDLTEAVHS 24 (90) T ss_dssp CEEESCCTTCCHHHHHHHHHT T ss_pred EEECCCCCCCCHHHHHHHHHH T ss_conf 998898998989999999865 No 390 >3beg_B Splicing factor, arginine/serine-rich 1; kinase, SR protein kinase, SR protein, PRE-mRNA splicing, alternative splicing, ATP-binding; HET: SEP ANP; 2.90A {Homo sapiens} SCOP: d.58.7.1 PDB: 2o3d_A 1wg4_A Probab=35.26 E-value=9.1 Score=17.55 Aligned_cols=21 Identities=14% Similarity=0.151 Sum_probs=17.4 Q ss_pred EEEECCCHHHHHHHHHHHHHH Q ss_conf 112023224678899999852 Q gi|254780398|r 120 RIIANLPYNIGTRLLFNWISA 140 (284) Q Consensus 120 ~vvgNLPYnIss~Il~~ll~~ 140 (284) .+|+||||+++..=|..++.. T Consensus 19 v~V~NLp~~~t~~dL~~~F~~ 39 (115) T 3beg_B 19 VVVSGLPPSGSWQDLKDHMRE 39 (115) T ss_dssp EEEEECCSSCCTTHHHHHHGG T ss_pred EEEECCCCCCCHHHHHHHHCC T ss_conf 999789898999999998413 No 391 >3b4d_A Polyadenylate-binding protein 2; RRM fold, alpha-beta sandwich structure, RNA binding domain, RNA recognition motif, acetylation; 2.00A {Homo sapiens} PDB: 3b4m_A Probab=35.11 E-value=18 Score=15.71 Aligned_cols=22 Identities=14% Similarity=0.129 Sum_probs=18.3 Q ss_pred EEEEECCCHHHHHHHHHHHHHH Q ss_conf 0112023224678899999852 Q gi|254780398|r 119 IRIIANLPYNIGTRLLFNWISA 140 (284) Q Consensus 119 ~~vvgNLPYnIss~Il~~ll~~ 140 (284) ...|||||+.++..-|..++.. T Consensus 7 tlfV~nLp~~~t~~~L~~~F~~ 28 (96) T 3b4d_A 7 SIYVGNVDYGATAEELEAHFHG 28 (96) T ss_dssp EEEEESCCTTCCHHHHHHHHGG T ss_pred EEEEECCCCCCCHHHHHHHHHH T ss_conf 9999698998999999999851 No 392 >3lov_A Protoporphyrinogen oxidase; structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PSI-2; HET: FAD; 2.06A {Exiguobacterium sibiricum} Probab=35.07 E-value=21 Score=15.25 Aligned_cols=35 Identities=11% Similarity=0.206 Sum_probs=20.6 Q ss_pred CCEEEEECCCCCHHHHH--HHHCCC-CEEEEECCCCCC Q ss_conf 98799975898823467--750235-259984255430 Q gi|254780398|r 48 GITVIEIGAGPGNLTQM--LLTLGA-RKVIVIEKDQQF 82 (284) Q Consensus 48 ~~~VlEIGpG~G~LT~~--Ll~~~~-~~v~aiEiD~~~ 82 (284) ++.|+=||+|.+.||-+ |.+.+. .+|+.+|...+. T Consensus 4 ~kkV~IIGaGisGL~aA~~L~~~~~G~~V~vlE~~~~~ 41 (475) T 3lov_A 4 SKRLVIVGGGITGLAAAYYAERAFPDLNITLLEAGERL 41 (475) T ss_dssp SCEEEEECCBHHHHHHHHHHHHHCTTSEEEEECSSSSS T ss_pred CCEEEEECCCHHHHHHHHHHHHCCCCCCEEEEECCCCC T ss_conf 98099989888999999999836989978999379988 No 393 >1uaw_A Mouse-musashi-1; RNP-type structure, RNA binding protein; NMR {Mus musculus} SCOP: d.58.7.1 Probab=35.04 E-value=9.9 Score=17.33 Aligned_cols=20 Identities=15% Similarity=0.275 Sum_probs=16.6 Q ss_pred EEECCCHHHHHHHHHHHHHH Q ss_conf 12023224678899999852 Q gi|254780398|r 121 IIANLPYNIGTRLLFNWISA 140 (284) Q Consensus 121 vvgNLPYnIss~Il~~ll~~ 140 (284) .||||||++|..=|..++.. T Consensus 4 fV~nLp~~~te~~l~~~F~~ 23 (77) T 1uaw_A 4 FIGGLSWQTTQEGLREYFGQ 23 (77) T ss_dssp EEESCCSSCCSHHHHHHHTT T ss_pred EEECCCCCCCHHHHHHHHHH T ss_conf 99679986889999999732 No 394 >3egn_A RNA-binding protein 40; RNA recognition motif (RRM), RNP motif, U11/U12-65K protein, U11/U12 DI-snRNP, U1A protein, U2B protein; 2.50A {Homo sapiens} Probab=34.98 E-value=14 Score=16.42 Aligned_cols=23 Identities=13% Similarity=0.007 Sum_probs=18.6 Q ss_pred CEEEEECCCHHHHHHHHHHHHHH Q ss_conf 20112023224678899999852 Q gi|254780398|r 118 PIRIIANLPYNIGTRLLFNWISA 140 (284) Q Consensus 118 ~~~vvgNLPYnIss~Il~~ll~~ 140 (284) ....||||||+++..-|..++.. T Consensus 46 ~~l~V~NLp~~~te~~l~~~F~~ 68 (143) T 3egn_A 46 CRIYVKNLAKHVQEKDLKYIFGR 68 (143) T ss_dssp SEEEEEEECTTCCHHHHHHHHGG T ss_pred CEEEEECCCCCCCHHHHHHHHHH T ss_conf 79999699987989999999985 No 395 >2khc_A Testis-specific RNP-type RNA binding protein; RRM, RNA recognition motif, bruno; NMR {Drosophila melanogaster} Probab=34.62 E-value=12 Score=16.83 Aligned_cols=21 Identities=19% Similarity=0.107 Sum_probs=17.6 Q ss_pred EEEECCCHHHHHHHHHHHHHH Q ss_conf 112023224678899999852 Q gi|254780398|r 120 RIIANLPYNIGTRLLFNWISA 140 (284) Q Consensus 120 ~vvgNLPYnIss~Il~~ll~~ 140 (284) ..|+||||+++..-|..++.. T Consensus 43 l~V~nLp~~~t~~~l~~~F~~ 63 (118) T 2khc_A 43 LFIYHLPQEFTDTDLASTFLP 63 (118) T ss_dssp EEEECSCTTCCHHHHHHHTTT T ss_pred EEECCCCCCCCHHHHHHHHHH T ss_conf 998589996989999999983 No 396 >1xhl_A Short-chain dehydrogenase/reductase family member (5L265), putative tropinone reductase-II...; parallel beta-sheet of seven strands in the order 3214567; HET: NDP TNE; 2.40A {Caenorhabditis elegans} SCOP: c.2.1.2 Probab=34.49 E-value=22 Score=15.19 Aligned_cols=63 Identities=16% Similarity=0.292 Sum_probs=44.3 Q ss_pred CCCCCEEEEECCCCC---HHHHHHHHCCCCEEEEECCCCCCHHHHHHHHHHH---HCCCCCCHHHHCCCC Q ss_conf 899987999758988---2346775023525998425543036887875322---001220000000143 Q gi|254780398|r 45 SLDGITVIEIGAGPG---NLTQMLLTLGARKVIVIEKDQQFFPILKDISSQH---PNRLEIIQDDALKVD 108 (284) Q Consensus 45 ~~~~~~VlEIGpG~G---~LT~~Ll~~~~~~v~aiEiD~~~~~~l~~~~~~~---~~~~~ii~~Dal~~d 108 (284) ..+++.+|=-|.+.| ++.+.|++.++ +|+...+++.-.+.+.+..... ..++..+.+|+.+.+ T Consensus 23 rL~GKvalVTGas~GIG~aiA~~la~~Ga-~V~i~~r~~~~l~~~~~~i~~~g~~~~~v~~~~~Dvs~~~ 91 (297) T 1xhl_A 23 RFSGKSVIITGSSNGIGRSAAVIFAKEGA-QVTITGRNEDRLEETKQQILKAGVPAEKINAVVADVTEAS 91 (297) T ss_dssp CCTTCEEEETTCSSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHHHHHTTCCGGGEEEEECCTTSHH T ss_pred CCCCCEEEEECCCCHHHHHHHHHHHHCCC-EEEEEECCHHHHHHHHHHHHHCCCCCCCEEEEEEECCCHH T ss_conf 88998899947786899999999998799-8999989999999999999974898763689980089999 No 397 >2v0x_A Lamina-associated polypeptide 2 isoforms alpha/zeta; alternative splicing, nuclear protein, phosphorylation, chromosomal protein, coiled coil; 2.2A {Mus musculus} Probab=34.47 E-value=8.2 Score=17.81 Aligned_cols=52 Identities=17% Similarity=0.333 Sum_probs=35.5 Q ss_pred CCEECCCCCCCEEEEEECCCCCCC--------CCCHHHHHHHHHHHHCCCCHHHHHHHHH Q ss_conf 000010578757887301258855--------3476789999999972731389998763 Q gi|254780398|r 192 PHVFFPSPKVTSTVIHFIPHLNPI--------PCCLESLKKITQEAFGKRRKTLRQSLKR 243 (284) Q Consensus 192 ~~~F~P~PkVdS~vi~l~pk~~~~--------~~~~~~~~~~~~~~F~~RRK~l~~~L~~ 243 (284) -.-+++.|+||+.|+++..+.... +...+.++.+++..|..-.--|+-++.. T Consensus 68 ~~~w~s~P~VD~pIv~~ls~tT~p~~d~as~kd~~DKk~E~~L~r~f~aA~~alrpa~a~ 127 (235) T 2v0x_A 68 AARILSVPKVDDEILGFISEATPAAATQASSTESCDKHLDLALCRSYEAAASALQIAAHT 127 (235) T ss_dssp HHHHHSCCBCCHHHHHTTC-----------CTHHHHHHHHHHHHHHHHHHHHHHHHHHHH T ss_pred HHCCCCCCCCCHHHHHHHHCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHH T ss_conf 610467998637899988416789986433346336899999999999889997599999 No 398 >2cqc_A Arginine/serine-rich splicing factor 10; RNA recognition motif, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1 Probab=34.30 E-value=15 Score=16.13 Aligned_cols=22 Identities=18% Similarity=-0.040 Sum_probs=18.1 Q ss_pred EEEEECCCHHHHHHHHHHHHHH Q ss_conf 0112023224678899999852 Q gi|254780398|r 119 IRIIANLPYNIGTRLLFNWISA 140 (284) Q Consensus 119 ~~vvgNLPYnIss~Il~~ll~~ 140 (284) ...|+|||++++..-|..++.. T Consensus 17 tl~V~nLp~~~te~~l~~~F~~ 38 (95) T 2cqc_A 17 CLGVFGLSLYTTERDLREVFSK 38 (95) T ss_dssp CEEEESCCSSCCHHHHHHHHHT T ss_pred EEEECCCCCCCCHHHHHHHHHH T ss_conf 9998199998989999999987 No 399 >2rhc_B Actinorhodin polyketide ketoreductase; oxidoreductase, combinatorial biosynthesis, short chain dehydrogenase/reductase; HET: NAP EMO; 2.10A {Streptomyces coelicolor} SCOP: c.2.1.2 PDB: 2rh4_A* 1w4z_A* 3csd_B* 2rhr_B* 1x7g_A* 1x7h_A* 1xr3_A* Probab=34.29 E-value=22 Score=15.17 Aligned_cols=63 Identities=16% Similarity=0.115 Sum_probs=42.9 Q ss_pred CCCCCEEEEECCCCC---HHHHHHHHCCCCEEEEECCCCCCHHHHHHHHHHHHCCCCCCHHHHCCCC Q ss_conf 899987999758988---2346775023525998425543036887875322001220000000143 Q gi|254780398|r 45 SLDGITVIEIGAGPG---NLTQMLLTLGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVD 108 (284) Q Consensus 45 ~~~~~~VlEIGpG~G---~LT~~Ll~~~~~~v~aiEiD~~~~~~l~~~~~~~~~~~~ii~~Dal~~d 108 (284) ..+++.+|=-|.+.| ++.+.|++.++ +|+...+|..-++.+.+.......++..+.+|..+.+ T Consensus 19 ~l~gKVAlVTGas~GIG~aiA~~la~~Ga-~Vvi~~r~~~~l~~~~~~i~~~g~~~~~~~~Dvt~~~ 84 (277) T 2rhc_B 19 TQDSEVALVTGATSGIGLEIARRLGKEGL-RVFVCARGEEGLRTTLKELREAGVEADGRTCDVRSVP 84 (277) T ss_dssp CTTSCEEEEETCSSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHHHHHTTCCEEEEECCTTCHH T ss_pred CCCCCEEEEECCCCHHHHHHHHHHHHCCC-EEEEEECCHHHHHHHHHHHHHCCCCEEEEEEECCCHH T ss_conf 76997899927675999999999998799-9999979989999999999853992899992079999 No 400 >3ka7_A Oxidoreductase; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; HET: FAD; 1.80A {Methanosarcina mazei} Probab=34.27 E-value=20 Score=15.42 Aligned_cols=12 Identities=25% Similarity=0.235 Sum_probs=6.5 Q ss_pred EEEECCCHHHHH Q ss_conf 112023224678 Q gi|254780398|r 120 RIIANLPYNIGT 131 (284) Q Consensus 120 ~vvgNLPYnIss 131 (284) +||.|.|..-+. T Consensus 243 ~VI~~~~~~~~~ 254 (425) T 3ka7_A 243 LVISNLGHAATA 254 (425) T ss_dssp EEEECSCHHHHH T ss_pred EEEECCCHHHHH T ss_conf 999896989999 No 401 >2dhg_A TRNA selenocysteine associated protein (SECP43); RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} Probab=34.02 E-value=15 Score=16.21 Aligned_cols=22 Identities=9% Similarity=0.368 Sum_probs=18.2 Q ss_pred EEEEECCCHHHHHHHHHHHHHH Q ss_conf 0112023224678899999852 Q gi|254780398|r 119 IRIIANLPYNIGTRLLFNWISA 140 (284) Q Consensus 119 ~~vvgNLPYnIss~Il~~ll~~ 140 (284) ...|||||++++..-|..++.. T Consensus 11 ~lfV~nLp~~~te~~l~~~F~~ 32 (104) T 2dhg_A 11 SLFVGDLTPDVDDGMLYEFFVK 32 (104) T ss_dssp CEEEECCCTTCCHHHHHHHHHH T ss_pred EEEEECCCCCCCHHHHHHHHHH T ss_conf 9999489984889999999865 No 402 >3n74_A 3-ketoacyl-(acyl-carrier-protein) reductase; seattle structural genomics center for infectious disease, S brucellosis; 2.20A {Brucella melitensis biovar abortus} Probab=33.78 E-value=22 Score=15.12 Aligned_cols=59 Identities=22% Similarity=0.323 Sum_probs=42.1 Q ss_pred CCCCEEEEECCCCC---HHHHHHHHCCCCEEEEECCCCCCHHHHHHHHHHHHCCCCCCHHHHCCCC Q ss_conf 99987999758988---2346775023525998425543036887875322001220000000143 Q gi|254780398|r 46 LDGITVIEIGAGPG---NLTQMLLTLGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVD 108 (284) Q Consensus 46 ~~~~~VlEIGpG~G---~LT~~Ll~~~~~~v~aiEiD~~~~~~l~~~~~~~~~~~~ii~~Dal~~d 108 (284) .+++.+|=.|.+.| ++.+.|++.++ +|+.+.+|+.-.+.+.+.+ .++...+.+|+.+.+ T Consensus 7 L~gK~alVTGas~GIG~aia~~la~~Ga-~V~~~~r~~~~l~~~~~~l---~~~~~~~~~Dv~~~~ 68 (261) T 3n74_A 7 LEGKVALITGAGSGFGEGMAKRFAKGGA-KVVIVDRDKAGAERVAGEI---GDAALAVAADISKEA 68 (261) T ss_dssp TTTCEEEEETTTSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHHH---CTTEEEEECCTTSHH T ss_pred CCCCEEEEECCCCHHHHHHHHHHHHCCC-EEEEEECCHHHHHHHHHHH---CCCEEEEEEECCCHH T ss_conf 8999899938887899999999998799-8999989999999999983---896799996279999 No 403 >2wbr_A GW182, gawky, LD47780P; DNA-binding protein, RRM, RBD, TNRC6A, mirnas, P-bodies, argonaute, mRNA decay; NMR {Drosophila melanogaster} Probab=33.74 E-value=15 Score=16.11 Aligned_cols=25 Identities=20% Similarity=0.126 Sum_probs=19.7 Q ss_pred CCCEEEEECCCHHHHHHHHHHHHHH Q ss_conf 2220112023224678899999852 Q gi|254780398|r 116 SSPIRIIANLPYNIGTRLLFNWISA 140 (284) Q Consensus 116 ~~~~~vvgNLPYnIss~Il~~ll~~ 140 (284) +....+|+|||++++..-|..+++. T Consensus 6 ~s~~l~v~NL~~~vt~~~L~~lf~~ 30 (89) T 2wbr_A 6 GSSWLLLKNLTAQIDGPTLRTLCMQ 30 (89) T ss_dssp CCCEEEEECCCTTCCCHHHHHHHHH T ss_pred CCCEEEEECCCCCCCHHHHHHHHHH T ss_conf 8778999799998999999999998 No 404 >1whx_A Hypothetical protein riken cDNA 1200009A02; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1 Probab=33.32 E-value=17 Score=15.82 Aligned_cols=22 Identities=18% Similarity=0.128 Sum_probs=17.6 Q ss_pred EEEEECCCHHHHHHHHHHHHHH Q ss_conf 0112023224678899999852 Q gi|254780398|r 119 IRIIANLPYNIGTRLLFNWISA 140 (284) Q Consensus 119 ~~vvgNLPYnIss~Il~~ll~~ 140 (284) ..+|+||||.++-.=|..++.. T Consensus 12 ~l~V~NLp~~~t~~~L~~~F~~ 33 (111) T 1whx_A 12 VILAKNLPAGTLAAEIQETFSR 33 (111) T ss_dssp EEEEESCCTTCCHHHHHHHHHT T ss_pred EEEEECCCCCCCHHHHHHHHHH T ss_conf 9999799898989999999856 No 405 >2x1f_A MRNA 3'-END-processing protein RNA15; transcription-RNA complex, mRNA processing; 1.60A {Saccharomyces cerevisiae} PDB: 2x1b_A 2x1a_A 2km8_B Probab=33.30 E-value=18 Score=15.76 Aligned_cols=22 Identities=14% Similarity=0.422 Sum_probs=18.0 Q ss_pred EEEEECCCHHHHHHHHHHHHHH Q ss_conf 0112023224678899999852 Q gi|254780398|r 119 IRIIANLPYNIGTRLLFNWISA 140 (284) Q Consensus 119 ~~vvgNLPYnIss~Il~~ll~~ 140 (284) ...|||||++++..-|..++.. T Consensus 4 tl~V~nLp~~~te~~L~~~F~~ 25 (96) T 2x1f_A 4 VVYLGSIPYDQTEEQILDLCSN 25 (96) T ss_dssp EEEEESCCTTCCHHHHHHHHHT T ss_pred EEEEECCCCCCCHHHHHHHHHH T ss_conf 8999699986999999999997 No 406 >2cpj_A Non-POU domain-containing octamer-binding protein; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1 Probab=33.27 E-value=6.7 Score=18.36 Aligned_cols=21 Identities=19% Similarity=0.284 Sum_probs=17.3 Q ss_pred EEEECCCHHHHHHHHHHHHHH Q ss_conf 112023224678899999852 Q gi|254780398|r 120 RIIANLPYNIGTRLLFNWISA 140 (284) Q Consensus 120 ~vvgNLPYnIss~Il~~ll~~ 140 (284) ..|+|||++++-.-|..++.. T Consensus 18 lfV~nlp~~~t~~~L~~~F~~ 38 (99) T 2cpj_A 18 LFVGNLPPDITEEEMRKLFEK 38 (99) T ss_dssp EEEESCCTTCCHHHHHHHTST T ss_pred EEEECCCCCCCHHHHHHHHHH T ss_conf 999598986989999999984 No 407 >1p27_B RNA-binding protein 8A; nuclear protein, mRNA splicing, alternative splicing; 2.00A {Homo sapiens} SCOP: d.58.7.1 Probab=33.12 E-value=22 Score=15.16 Aligned_cols=23 Identities=4% Similarity=-0.016 Sum_probs=18.4 Q ss_pred CEEEEECCCHHHHHHHHHHHHHH Q ss_conf 20112023224678899999852 Q gi|254780398|r 118 PIRIIANLPYNIGTRLLFNWISA 140 (284) Q Consensus 118 ~~~vvgNLPYnIss~Il~~ll~~ 140 (284) ....||||||+++-.-|..++.. T Consensus 24 ~~l~V~nL~~~~~e~~L~~~F~~ 46 (106) T 1p27_B 24 WILFVTGVHEEATEEDIHDKFAE 46 (106) T ss_dssp EEEEEECCCTTCCHHHHHHHHGG T ss_pred CEEEECCCCCCCCHHHHHHHHHH T ss_conf 79998689998999999999986 No 408 >2dnq_A RNA-binding protein 4B; RRM domain,RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Probab=33.06 E-value=14 Score=16.31 Aligned_cols=22 Identities=18% Similarity=0.191 Sum_probs=17.9 Q ss_pred EEEECCCHHHHHHHHHHHHHHH Q ss_conf 1120232246788999998520 Q gi|254780398|r 120 RIIANLPYNIGTRLLFNWISAD 141 (284) Q Consensus 120 ~vvgNLPYnIss~Il~~ll~~~ 141 (284) ..|||||++++..-|..++... T Consensus 11 lfV~nlp~~~t~~~l~~~F~~~ 32 (90) T 2dnq_A 11 LFIGNLPREATEQEIRSLFEQY 32 (90) T ss_dssp EEEESCCSSCCHHHHHHHHHTS T ss_pred EEEECCCCCCCHHHHHHHHHHH T ss_conf 9995899869999999999871 No 409 >1cvj_A Polyadenylate binding protein 1; RRM, protein-RNA complex, gene regulation-RNA complex; HET: A; 2.60A {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 2k8g_A Probab=32.98 E-value=17 Score=15.92 Aligned_cols=24 Identities=29% Similarity=0.261 Sum_probs=18.0 Q ss_pred CEEEEECCCHHHHHHHHHHHHHHH Q ss_conf 201120232246788999998520 Q gi|254780398|r 118 PIRIIANLPYNIGTRLLFNWISAD 141 (284) Q Consensus 118 ~~~vvgNLPYnIss~Il~~ll~~~ 141 (284) ....|+|||++++..-|..++... T Consensus 99 ~~l~v~nl~~~~~~~~l~~~f~~~ 122 (190) T 1cvj_A 99 GNIFIKNLDKSIDNKALYDTFSAF 122 (190) T ss_dssp TEEEEESCCSSCCHHHHHHHHHTT T ss_pred CCCCCCCCCCCCCHHHHHHHHHHC T ss_conf 200003767678899999999756 No 410 >3k89_A Malonyl COA-ACP transacylase; bacterial blight, XOO0880, FABD, xanthomonas oryzae PV. oryzae KACC10331; 1.60A {Xanthomonas oryzae PV} PDB: 3een_A Probab=32.91 E-value=23 Score=15.03 Aligned_cols=16 Identities=19% Similarity=0.370 Sum_probs=9.1 Q ss_pred EEEEECCCCCHHHHHH Q ss_conf 7999758988234677 Q gi|254780398|r 50 TVIEIGAGPGNLTQML 65 (284) Q Consensus 50 ~VlEIGpG~G~LT~~L 65 (284) ...=+|-..|-++-.. T Consensus 87 P~~v~GhSlGE~aAl~ 102 (314) T 3k89_A 87 PALLAGHSLGEYTALV 102 (314) T ss_dssp EEEEEESTHHHHHHHH T ss_pred CCCHHHCCCCHHHHHH T ss_conf 5210025644799999 No 411 >1x4b_A Heterogeneous nuclear ribonucleoproteins A2/B1; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1 Probab=32.86 E-value=14 Score=16.40 Aligned_cols=21 Identities=19% Similarity=0.297 Sum_probs=18.0 Q ss_pred EEEECCCHHHHHHHHHHHHHH Q ss_conf 112023224678899999852 Q gi|254780398|r 120 RIIANLPYNIGTRLLFNWISA 140 (284) Q Consensus 120 ~vvgNLPYnIss~Il~~ll~~ 140 (284) ..||||||.++..-|..++.. T Consensus 30 lfV~nL~~~~te~~L~~~F~~ 50 (116) T 1x4b_A 30 LFIGGLSFETTEESLRNYYEQ 50 (116) T ss_dssp EEEECCTTCCCHHHHHHHHTS T ss_pred EEEECCCCCCCHHHHHHHHHH T ss_conf 999089986889999999986 No 412 >2ywk_A Putative RNA-binding protein 11; RRM-domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; 1.54A {Homo sapiens} Probab=32.85 E-value=22 Score=15.10 Aligned_cols=22 Identities=14% Similarity=0.314 Sum_probs=18.3 Q ss_pred EEEEECCCHHHHHHHHHHHHHH Q ss_conf 0112023224678899999852 Q gi|254780398|r 119 IRIIANLPYNIGTRLLFNWISA 140 (284) Q Consensus 119 ~~vvgNLPYnIss~Il~~ll~~ 140 (284) ...|+|||+.++..-|..++.. T Consensus 18 tl~V~nlp~~~t~~~l~~~F~~ 39 (95) T 2ywk_A 18 TVFVGNLEARVREEILYELFLQ 39 (95) T ss_dssp EEEEECCCTTCCHHHHHHHHGG T ss_pred EEEEECCCCCCCHHHHHHHHHH T ss_conf 9999799997989999999986 No 413 >3ic9_A Dihydrolipoamide dehydrogenase; APC62701, structural genomics, PSI-2, protein structure initiative; HET: FAD; 2.15A {Colwellia psychrerythraea 34H} Probab=32.68 E-value=23 Score=15.09 Aligned_cols=34 Identities=26% Similarity=0.240 Sum_probs=14.7 Q ss_pred CCEEEEECCCCCHHHH--HHHHCCCCEEEEECCCCCC Q ss_conf 9879997589882346--7750235259984255430 Q gi|254780398|r 48 GITVIEIGAGPGNLTQ--MLLTLGARKVIVIEKDQQF 82 (284) Q Consensus 48 ~~~VlEIGpG~G~LT~--~Ll~~~~~~v~aiEiD~~~ 82 (284) ...|+=||.|.-++-. .+...+ .+|+.+|..+++ T Consensus 174 pk~vvIIGgG~ig~E~A~~l~~~G-~~Vtli~r~~~~ 209 (492) T 3ic9_A 174 PKSVAVFGPGVIGLELGQALSRLG-VIVKVFGRSGSV 209 (492) T ss_dssp CSEEEEESSCHHHHHHHHHHHHTT-CEEEEECCTTCC T ss_pred CCEEEEECCCCCCHHHHHHHHHCC-CEEEEEEEECCC T ss_conf 975999736643016779898569-778998740456 No 414 >2aym_A U1 small nuclear ribonucleoprotein A; SNF RBD2, RNA binding, RNA splicing, solution structure, RNA binding protein; NMR {Drosophila melanogaster} SCOP: d.58.7.1 PDB: 2b0g_A 2u1a_A Probab=32.68 E-value=19 Score=15.50 Aligned_cols=24 Identities=21% Similarity=0.297 Sum_probs=19.0 Q ss_pred CCEEEEECCCHHHHHHHHHHHHHH Q ss_conf 220112023224678899999852 Q gi|254780398|r 117 SPIRIIANLPYNIGTRLLFNWISA 140 (284) Q Consensus 117 ~~~~vvgNLPYnIss~Il~~ll~~ 140 (284) .....|+|||+.++..-|..++.. T Consensus 8 ~~tL~V~nlp~~~~e~~l~~~F~~ 31 (83) T 2aym_A 8 NQILFLTNLPEETNEMMLSMLFNQ 31 (83) T ss_dssp CSEEEEESCCTTCCHHHHHHHHTT T ss_pred CCEEEEECCCCCCCHHHHHHHHCC T ss_conf 989999799998989999997324 No 415 >2e5g_A U6 snRNA-specific terminal uridylyltransferase 1; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens} Probab=32.54 E-value=20 Score=15.35 Aligned_cols=23 Identities=13% Similarity=0.278 Sum_probs=18.5 Q ss_pred CEEEEECCCHHHHHHHHHHHHHH Q ss_conf 20112023224678899999852 Q gi|254780398|r 118 PIRIIANLPYNIGTRLLFNWISA 140 (284) Q Consensus 118 ~~~vvgNLPYnIss~Il~~ll~~ 140 (284) ....|||||++++..-|..++.. T Consensus 9 rtlfV~nl~~~~te~~l~~~F~~ 31 (94) T 2e5g_A 9 RSVFVSGFPRGVDSAQLSEYFLA 31 (94) T ss_dssp CEEEEECCCTTCCHHHHHHHGGG T ss_pred CEEEECCCCCCCCHHHHHHHHHC T ss_conf 99999599986899999998521 No 416 >2cpd_A Apobec-1 stimulating protein; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1 Probab=32.21 E-value=21 Score=15.30 Aligned_cols=23 Identities=13% Similarity=0.135 Sum_probs=18.2 Q ss_pred CEEEEECCCHHHHHHHHHHHHHH Q ss_conf 20112023224678899999852 Q gi|254780398|r 118 PIRIIANLPYNIGTRLLFNWISA 140 (284) Q Consensus 118 ~~~vvgNLPYnIss~Il~~ll~~ 140 (284) ....|+||||.++..=|..++.. T Consensus 16 ~~l~V~nLp~~~t~~~l~~~F~~ 38 (99) T 2cpd_A 16 KILYVRNLMLSTSEEMIEKEFNN 38 (99) T ss_dssp CEEEEESCCTTCCHHHHHHHHHT T ss_pred CEEEECCCCCCCCHHHHHHHHHC T ss_conf 89998599987899999998716 No 417 >2kn4_A Immunoglobulin G-binding protein G, splicing FACT arginine/serine-rich 2, S35, splicing factor SC35,; RRM domain, cell WALL; NMR {Streptococcus SP} Probab=32.19 E-value=13 Score=16.53 Aligned_cols=22 Identities=18% Similarity=0.158 Sum_probs=18.2 Q ss_pred EEEEECCCHHHHHHHHHHHHHH Q ss_conf 0112023224678899999852 Q gi|254780398|r 119 IRIIANLPYNIGTRLLFNWISA 140 (284) Q Consensus 119 ~~vvgNLPYnIss~Il~~ll~~ 140 (284) ...|+||||+++..-|..++.. T Consensus 72 ~l~V~nL~~~~te~~L~~~F~~ 93 (158) T 2kn4_A 72 SLKVDNLTYRTSPDTLRRVFEK 93 (158) T ss_dssp EEEEESCCTTCCHHHHHHHHHH T ss_pred EEEECCCCCCCCHHHHHHHHHH T ss_conf 7999198998889999999871 No 418 >2jvo_A Nucleolar protein 3; nucleus, phosphorylation, ribonucleoprotein, ribosome biogenesis, RNA-binding, rRNA processing; NMR {Saccharomyces cerevisiae} PDB: 2osq_A Probab=31.84 E-value=15 Score=16.16 Aligned_cols=22 Identities=9% Similarity=0.161 Sum_probs=18.0 Q ss_pred EEEEECCCHHHHHHHHHHHHHH Q ss_conf 0112023224678899999852 Q gi|254780398|r 119 IRIIANLPYNIGTRLLFNWISA 140 (284) Q Consensus 119 ~~vvgNLPYnIss~Il~~ll~~ 140 (284) ...|+||||++|-.-|..++.. T Consensus 33 ~l~V~nLp~~~t~~~l~~~F~~ 54 (108) T 2jvo_A 33 RLFVRPFPLDVQESELNEIFGP 54 (108) T ss_dssp EEEECSSCTTCCHHHHHHHHTT T ss_pred EEEEECCCCCCCHHHHHHHHHH T ss_conf 9999699985899999999987 No 419 >3l9w_A Glutathione-regulated potassium-efflux system Pro linker, ancillary protein KEFF; potassium channel regulation, domains, antiport; HET: FMN AMP GSH; 1.75A {Escherichia coli} PDB: 3eyw_A* 3l9x_A* Probab=31.79 E-value=24 Score=14.91 Aligned_cols=78 Identities=22% Similarity=0.389 Sum_probs=43.1 Q ss_pred CCCEEEEECCCC-CH-HHHHHHHCCCCEEEEECCCCCCHHHHHHHHHHHHCCCCCCHHHHCCCCHHHHCCCCCCEEEEEC Q ss_conf 998799975898-82-3467750235259984255430368878753220012200000001431552133222011202 Q gi|254780398|r 47 DGITVIEIGAGP-GN-LTQMLLTLGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIAN 124 (284) Q Consensus 47 ~~~~VlEIGpG~-G~-LT~~Ll~~~~~~v~aiEiD~~~~~~l~~~~~~~~~~~~ii~~Dal~~d~~~~~~~~~~~~vvgN 124 (284) .+..|+=+|.|. |. +.+.|.+.+ ..+++||.|+..++.+++. + +.++.||+.+-+.-.-.....--.||.- T Consensus 3 hgmhVII~G~Gr~G~~va~~L~~~g-~~vvvID~d~~~v~~l~~~-----g-~~vi~GDat~~~~L~~Agi~~A~~vIia 75 (413) T 3l9w_A 3 HGMRVIIAGFGRFGQITGRLLLSSG-VKMVVLDHDPDHIETLRKF-----G-MKVFYGDATRMDLLESAGAAKAEVLINA 75 (413) T ss_dssp -CCSEEEECCSHHHHHHHHHHHHTT-CCEEEEECCHHHHHHHHHT-----T-CCCEESCTTCHHHHHHTTTTTCSEEEEC T ss_pred CCCEEEEECCCHHHHHHHHHHHHCC-CCEEEEECCHHHHHHHHHC-----C-CCEEEECCCCHHHHHHCCCCCCCEEEEE T ss_conf 8996999898889999999999689-9889998999999999977-----9-9099963899999985697759999997 Q ss_pred CCHHHHH Q ss_conf 3224678 Q gi|254780398|r 125 LPYNIGT 131 (284) Q Consensus 125 LPYnIss 131 (284) ++-.-.+ T Consensus 76 ~~d~~~n 82 (413) T 3l9w_A 76 IDDPQTN 82 (413) T ss_dssp CSSHHHH T ss_pred ECCHHHH T ss_conf 1988999 No 420 >3m1a_A Putative dehydrogenase; short, PSI, MCSG, structural genomics, midwest center for structural genomics, protein structure initiative; 2.00A {Streptomyces avermitilis} Probab=31.71 E-value=24 Score=14.91 Aligned_cols=58 Identities=21% Similarity=0.244 Sum_probs=40.1 Q ss_pred CCCEEEEECCCCCH---HHHHHHHCCCCEEEEECCCCCCHHHHHHHHHHHHCCCCCCHHHHCCCC Q ss_conf 99879997589882---346775023525998425543036887875322001220000000143 Q gi|254780398|r 47 DGITVIEIGAGPGN---LTQMLLTLGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVD 108 (284) Q Consensus 47 ~~~~VlEIGpG~G~---LT~~Ll~~~~~~v~aiEiD~~~~~~l~~~~~~~~~~~~ii~~Dal~~d 108 (284) .++.+|=-|++.|. +.+.|++.++ +|++..++..-.+.+.+. .++++..+.+|+.+.+ T Consensus 4 ~gKV~lITGas~GIG~aia~~la~~G~-~V~~~~r~~~~l~~~~~~---~~~~~~~~~~Dv~~~~ 64 (281) T 3m1a_A 4 SAKVWLVTGASSGFGRAIAEAAVAAGD-TVIGTARRTEALDDLVAA---YPDRAEAISLDVTDGE 64 (281) T ss_dssp CCCEEEETTTTSHHHHHHHHHHHHTTC-EEEEEESSGGGGHHHHHH---CTTTEEEEECCTTCHH T ss_pred CCCEEEEECCCCHHHHHHHHHHHHCCC-EEEEEECCHHHHHHHHHH---CCCCEEEEEEECCCHH T ss_conf 998999908886999999999998799-999998999999999997---6895799997379999 No 421 >2dgu_A Heterogeneous nuclear ribonucleoprotein Q; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2dk2_A Probab=31.49 E-value=20 Score=15.44 Aligned_cols=23 Identities=17% Similarity=0.239 Sum_probs=18.7 Q ss_pred CEEEEECCCHHHHHHHHHHHHHH Q ss_conf 20112023224678899999852 Q gi|254780398|r 118 PIRIIANLPYNIGTRLLFNWISA 140 (284) Q Consensus 118 ~~~vvgNLPYnIss~Il~~ll~~ 140 (284) ....|+|||+.++.+-|..++.. T Consensus 12 r~lfV~nlp~~~te~~L~~~F~~ 34 (103) T 2dgu_A 12 KVLFVRNLANTVTEEILEKAFSQ 34 (103) T ss_dssp CCEEEECCCTTCCHHHHHHHHHH T ss_pred CEEEECCCCCCCCHHHHHHHHHH T ss_conf 48998399998899999999998 No 422 >1xdi_A RV3303C-LPDA; reductase, FAD, NAD, NADP, unknown function; HET: FAD; 2.81A {Mycobacterium tuberculosis} SCOP: c.3.1.5 d.87.1.1 Probab=31.45 E-value=21 Score=15.30 Aligned_cols=32 Identities=25% Similarity=0.479 Sum_probs=20.2 Q ss_pred CEEEEECCCCCHHHHHHHHC--CC--CEEEEECCCC Q ss_conf 87999758988234677502--35--2599842554 Q gi|254780398|r 49 ITVIEIGAGPGNLTQMLLTL--GA--RKVIVIEKDQ 80 (284) Q Consensus 49 ~~VlEIGpG~G~LT~~Ll~~--~~--~~v~aiEiD~ 80 (284) ..|+=||.|+|.++-++..+ +. .+|+.||.|. T Consensus 3 ~~vvIIGaGpAG~~aA~~aa~~~~~g~~V~liEk~~ 38 (499) T 1xdi_A 3 TRIVILGGGPAGYEAALVAATSHPETTQVTVIDCDG 38 (499) T ss_dssp EEEEEECCSHHHHHHHHHHHHHCTTTEEEEEEESSC T ss_pred CCEEEECCCHHHHHHHHHHHHCCCCCCEEEEEECCC T ss_conf 869998788899999999985686889899994399 No 423 >2ad9_A Polypyrimidine tract-binding protein 1; RBD, RRM, protein-RNA complex, RNA binding protein/RNA complex; NMR {Homo sapiens} SCOP: d.58.7.1 Probab=31.44 E-value=14 Score=16.47 Aligned_cols=24 Identities=17% Similarity=0.167 Sum_probs=18.3 Q ss_pred CCEEEEECCCHHHHHHHHHHHHHH Q ss_conf 220112023224678899999852 Q gi|254780398|r 117 SPIRIIANLPYNIGTRLLFNWISA 140 (284) Q Consensus 117 ~~~~vvgNLPYnIss~Il~~ll~~ 140 (284) .....|+|||++++-.-|..++.. T Consensus 31 s~~l~v~nLp~~~te~~L~~~F~~ 54 (119) T 2ad9_A 31 SRVIHIRKLPIDVTEGEVISLGLP 54 (119) T ss_dssp CSEEEEESCCTTCCHHHHHHHHTT T ss_pred CCEEEEECCCCCCCHHHHHHHHHH T ss_conf 989999699999999999999987 No 424 >3afn_B A1-R, 4-deoxy-L-erythro-5-hexoseulose-uronic acid reductase; alpha/beta/alpha, rossmann-fold, oxidoreductase; HET: NAP; 1.63A {Sphingomonas SP} PDB: 3afm_A* Probab=31.41 E-value=24 Score=14.87 Aligned_cols=62 Identities=16% Similarity=0.175 Sum_probs=41.3 Q ss_pred CCCCEEEEECCCCC---HHHHHHHHCCCCEEEEECCCCC-CHHHHHHHHHHHHCCCCCCHHHHCCCC Q ss_conf 99987999758988---2346775023525998425543-036887875322001220000000143 Q gi|254780398|r 46 LDGITVIEIGAGPG---NLTQMLLTLGARKVIVIEKDQQ-FFPILKDISSQHPNRLEIIQDDALKVD 108 (284) Q Consensus 46 ~~~~~VlEIGpG~G---~LT~~Ll~~~~~~v~aiEiD~~-~~~~l~~~~~~~~~~~~ii~~Dal~~d 108 (284) .+++.+|=-|.+.| ++.+.|++.++ +|+...++.. ..+.+.+.......+...+.+|..+.+ T Consensus 5 L~gK~alVTGas~GIG~aia~~la~~Ga-~V~i~~r~~~~~~~~~~~~~~~~g~~~~~~~~Dv~~~~ 70 (258) T 3afn_B 5 LKGKRVLITGSSQGIGLATARLFARAGA-KVGLHGRKAPANIDETIASMRADGGDAAFFAADLATSE 70 (258) T ss_dssp GTTCEEEETTCSSHHHHHHHHHHHHTTC-EEEEEESSCCTTHHHHHHHHHHTTCEEEEEECCTTSHH T ss_pred CCCCEEEEECCCCHHHHHHHHHHHHCCC-EEEEEECCCHHHHHHHHHHHHHCCCCEEEEECCCCCHH T ss_conf 8998799937985999999999998799-99999798442199999999962996899981389999 No 425 >1sjq_A Polypyrimidine tract-binding protein 1; babbab motif, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1 Probab=31.37 E-value=21 Score=15.31 Aligned_cols=24 Identities=17% Similarity=0.167 Sum_probs=18.3 Q ss_pred CCEEEEECCCHHHHHHHHHHHHHH Q ss_conf 220112023224678899999852 Q gi|254780398|r 117 SPIRIIANLPYNIGTRLLFNWISA 140 (284) Q Consensus 117 ~~~~vvgNLPYnIss~Il~~ll~~ 140 (284) +....|+|||+++|..-|..++.. T Consensus 16 S~~l~V~nLp~~~te~~L~~lF~~ 39 (105) T 1sjq_A 16 SRVIHIRKLPIDVTEGEVISLGLP 39 (105) T ss_dssp CCEEEECSCCTTSCHHHHHHHHHH T ss_pred CCEEEEECCCCCCCHHHHHHHHHC T ss_conf 868999499999899999998635 No 426 >2dhx_A Poly (ADP-ribose) polymerase family, member 10 variant; RRM domain, RNA- binding, structural genomics, NPPSFA; NMR {Homo sapiens} Probab=31.37 E-value=17 Score=15.80 Aligned_cols=49 Identities=18% Similarity=0.122 Sum_probs=28.7 Q ss_pred EEEEECCCHHHHHHHHHHHHHHHCCCCC---C------CHHHH-EEEHHHHHHHHHCCC Q ss_conf 0112023224678899999852010000---0------01102-033447887530123 Q gi|254780398|r 119 IRIIANLPYNIGTRLLFNWISADTWPPF---W------ESLTL-LFQKEVGERITAQKN 167 (284) Q Consensus 119 ~~vvgNLPYnIss~Il~~ll~~~~~~~~---~------~~~vl-mvQkEvA~Rl~a~pg 167 (284) -..|+|||++++..-|..+.+....... . -.+.+ +--.|.|++.++..+ T Consensus 10 ~v~V~gLp~~~~~~~L~~~F~~~g~~~~g~v~~~~~~~g~gFV~F~~~~~a~~al~~~~ 68 (104) T 2dhx_A 10 AVEVRGLPPAVPDELLTLYFENRRRSGGGPVLSWQRLGCGGVLTFREPADAERVLAQAD 68 (104) T ss_dssp EEEEESCCTTSCHHHHHHHHHCTTTTCCCCEEEEEEETTEEEEEESSHHHHHHHHTCSC T ss_pred EEEEECCCCCCCHHHHHHHHHHCCCCCCEEEEEEEEECCCEEEEEECHHHHHHHHHCCC T ss_conf 89996999978889999999853985526999977618858999927899999985599 No 427 >2f3j_A RNA and export factor binding protein 2; RRM domain, RBD domain., transport protein; NMR {Mus musculus} Probab=31.30 E-value=15 Score=16.11 Aligned_cols=21 Identities=10% Similarity=0.300 Sum_probs=17.7 Q ss_pred EEEECCCHHHHHHHHHHHHHH Q ss_conf 112023224678899999852 Q gi|254780398|r 120 RIIANLPYNIGTRLLFNWISA 140 (284) Q Consensus 120 ~vvgNLPYnIss~Il~~ll~~ 140 (284) .+|+||||.+|.+-|..++.. T Consensus 91 l~V~NLp~~vte~dL~elF~~ 111 (177) T 2f3j_A 91 LLVSNLDFGVSDADIQELFAE 111 (177) T ss_dssp EEEECCCSCCCHHHHHHHHHH T ss_pred EEEECCCCCCCHHHHHHHHHH T ss_conf 999899998889999999987 No 428 >2div_A TRNA selenocysteine associated protein; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Probab=31.29 E-value=22 Score=15.20 Aligned_cols=24 Identities=4% Similarity=0.001 Sum_probs=19.3 Q ss_pred CEEEEECCCHHHHHHHHHHHHHHH Q ss_conf 201120232246788999998520 Q gi|254780398|r 118 PIRIIANLPYNIGTRLLFNWISAD 141 (284) Q Consensus 118 ~~~vvgNLPYnIss~Il~~ll~~~ 141 (284) ....|||||++++-.-|..++... T Consensus 10 ~~lfVgnL~~~~te~~L~~~F~~~ 33 (99) T 2div_A 10 ASLWMGDLEPYMDENFISRAFATM 33 (99) T ss_dssp SEEEECSCCTTCCHHHHHHHHHHT T ss_pred CEEEEECCCCCCCHHHHHHHHHHC T ss_conf 799997989968899999999647 No 429 >2dnm_A SRP46 splicing factor; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Probab=31.13 E-value=17 Score=15.93 Aligned_cols=21 Identities=19% Similarity=0.181 Sum_probs=17.8 Q ss_pred EEEECCCHHHHHHHHHHHHHH Q ss_conf 112023224678899999852 Q gi|254780398|r 120 RIIANLPYNIGTRLLFNWISA 140 (284) Q Consensus 120 ~vvgNLPYnIss~Il~~ll~~ 140 (284) ..|+|||++++-.-|..++.. T Consensus 16 l~V~nLp~~~te~~l~~~F~~ 36 (103) T 2dnm_A 16 LKVDNLTYRTSPDSLRRVFEK 36 (103) T ss_dssp EEEESCCTTCCHHHHHHHHTT T ss_pred EEEECCCCCCCHHHHHHHHHH T ss_conf 999398999999999999974 No 430 >3d2w_A TAR DNA-binding protein 43; DP-43 proteinopathy, TDP-43 inclusions, RNA recognition MOTI U, ALS, RRM; HET: DNA; 1.65A {Mus musculus} Probab=31.12 E-value=17 Score=15.87 Aligned_cols=22 Identities=5% Similarity=0.080 Sum_probs=18.2 Q ss_pred EEEEECCCHHHHHHHHHHHHHH Q ss_conf 0112023224678899999852 Q gi|254780398|r 119 IRIIANLPYNIGTRLLFNWISA 140 (284) Q Consensus 119 ~~vvgNLPYnIss~Il~~ll~~ 140 (284) -..|||||+.+|..-|..++.. T Consensus 13 rlfV~nLp~~~te~~l~~~F~~ 34 (89) T 3d2w_A 13 KVFVGRCTEDMTAEELQQFFCQ 34 (89) T ss_dssp EEEEESCCTTCCHHHHHHHHTT T ss_pred EEEEECCCCCCCHHHHHHHHHH T ss_conf 9999499998999999999850 No 431 >2cpe_A RNA-binding protein EWS; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1 Probab=30.86 E-value=22 Score=15.13 Aligned_cols=24 Identities=8% Similarity=0.095 Sum_probs=18.6 Q ss_pred CCEEEEECCCHHHHHHHHHHHHHH Q ss_conf 220112023224678899999852 Q gi|254780398|r 117 SPIRIIANLPYNIGTRLLFNWISA 140 (284) Q Consensus 117 ~~~~vvgNLPYnIss~Il~~ll~~ 140 (284) .....|+||||+++-.=|..++.. T Consensus 15 ~~~v~V~nL~~~~te~dL~~~F~~ 38 (113) T 2cpe_A 15 NSAIYVQGLNDSVTLDDLADFFKQ 38 (113) T ss_dssp CCEEEEECCCTTCCHHHHHHHHTT T ss_pred CCEEEEECCCCCCCHHHHHHHHHH T ss_conf 999999599998989999999987 No 432 >1bdb_A CIS-biphenyl-2,3-dihydrodiol-2,3-dehydrogenase; NAD-dependent oxidoreductase, short-chain alcohol dehydrogenase, PCB degradation; HET: NAD; 2.00A {Pseudomonas SP} SCOP: c.2.1.2 Probab=30.77 E-value=25 Score=14.81 Aligned_cols=59 Identities=27% Similarity=0.420 Sum_probs=40.6 Q ss_pred CCCCEEEEECCCCC---HHHHHHHHCCCCEEEEECCCCCCHHHHHHHHHHHHCCCCCCHHHHCCCC Q ss_conf 99987999758988---2346775023525998425543036887875322001220000000143 Q gi|254780398|r 46 LDGITVIEIGAGPG---NLTQMLLTLGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVD 108 (284) Q Consensus 46 ~~~~~VlEIGpG~G---~LT~~Ll~~~~~~v~aiEiD~~~~~~l~~~~~~~~~~~~ii~~Dal~~d 108 (284) .+++.+|=.|.+.| ++.+.|++.++ +|+++.++..-.+.+ ......++..+.+|+.+.+ T Consensus 3 L~gKvalITGas~GIG~aiA~~la~~Ga-~V~i~~r~~~~l~~~---~~~~g~~~~~~~~Dv~~~~ 64 (277) T 1bdb_A 3 LKGEAVLITGGASGLGRALVDRFVAEGA-KVAVLDKSAERLAEL---ETDHGDNVLGIVGDVRSLE 64 (277) T ss_dssp TTTCEEEEETTTSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHH---HHHHGGGEEEEECCTTCHH T ss_pred CCCCEEEEECCCCHHHHHHHHHHHHCCC-EEEEEECCHHHHHHH---HHHCCCCEEEEECCCCCHH T ss_conf 8998999948787999999999998899-999997998999999---9975997799982379999 No 433 >2cq4_A RNA binding motif protein 23; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1 Probab=30.69 E-value=15 Score=16.19 Aligned_cols=22 Identities=27% Similarity=0.229 Sum_probs=17.9 Q ss_pred EEEEECCCHHHHHHHHHHHHHH Q ss_conf 0112023224678899999852 Q gi|254780398|r 119 IRIIANLPYNIGTRLLFNWISA 140 (284) Q Consensus 119 ~~vvgNLPYnIss~Il~~ll~~ 140 (284) ...|+||||+++..=|..++.. T Consensus 27 tv~V~nLp~~~te~~l~~~F~~ 48 (114) T 2cq4_A 27 TVFCMQLAARIRPRDLEDFFSA 48 (114) T ss_dssp EEEEESCCTTCCHHHHHHHHTT T ss_pred EEEEECCCCCCCHHHHHHHHHH T ss_conf 9999799997989999999971 No 434 >2ytc_A PRE-mRNA-splicing factor RBM22; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Probab=30.68 E-value=14 Score=16.34 Aligned_cols=23 Identities=17% Similarity=0.031 Sum_probs=18.4 Q ss_pred CEEEEECCCHHHHHHHHHHHHHH Q ss_conf 20112023224678899999852 Q gi|254780398|r 118 PIRIIANLPYNIGTRLLFNWISA 140 (284) Q Consensus 118 ~~~vvgNLPYnIss~Il~~ll~~ 140 (284) ....|+|||++++..-|..++.. T Consensus 13 ~tl~V~nlp~~~t~~~l~~~F~~ 35 (85) T 2ytc_A 13 TTLYVGGLGDTITETDLRNHFYQ 35 (85) T ss_dssp CCEEEECCTTTSCHHHHHHHHHT T ss_pred CEEEEECCCCCCCHHHHHHHHHH T ss_conf 99999699999999999999863 No 435 >2dgv_A HnRNP M, heterogeneous nuclear ribonucleoprotein M; RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} PDB: 2dh9_A Probab=30.61 E-value=22 Score=15.13 Aligned_cols=22 Identities=18% Similarity=0.382 Sum_probs=17.8 Q ss_pred EEEEECCCHHHHHHHHHHHHHH Q ss_conf 0112023224678899999852 Q gi|254780398|r 119 IRIIANLPYNIGTRLLFNWISA 140 (284) Q Consensus 119 ~~vvgNLPYnIss~Il~~ll~~ 140 (284) ...|+|||++++..-|..++.. T Consensus 10 ~l~V~nLp~~~t~~~l~~~F~~ 31 (92) T 2dgv_A 10 QIFVRNLPFDFTWKMLKDKFNE 31 (92) T ss_dssp EEEECSCCTTCCHHHHHHHHHT T ss_pred EEEEECCCCCCCHHHHHHHHHH T ss_conf 9999499986999999999997 No 436 >2cq3_A RNA-binding protein 9; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1 Probab=30.40 E-value=18 Score=15.67 Aligned_cols=21 Identities=14% Similarity=0.259 Sum_probs=17.7 Q ss_pred EEEECCCHHHHHHHHHHHHHH Q ss_conf 112023224678899999852 Q gi|254780398|r 120 RIIANLPYNIGTRLLFNWISA 140 (284) Q Consensus 120 ~vvgNLPYnIss~Il~~ll~~ 140 (284) ..|+|||++++..-|..++.. T Consensus 18 l~V~nLp~~~t~~~l~~~f~~ 38 (103) T 2cq3_A 18 LHVSNIPFRFRDPDLRQMFGQ 38 (103) T ss_dssp EEEESCCTTCCHHHHHHHGGG T ss_pred EEEECCCCCCCHHHHHHHHHH T ss_conf 999899998999999999987 No 437 >1k2w_A Sorbitol dehydrogenase; short-chain dehydrogenase, enzyme, oxidoreductase; 2.40A {Rhodobacter sphaeroides} SCOP: c.2.1.2 Probab=30.40 E-value=25 Score=14.77 Aligned_cols=59 Identities=19% Similarity=0.205 Sum_probs=40.4 Q ss_pred CCCCEEEEECCCCC---HHHHHHHHCCCCEEEEECCCCCCHHHHHHHHHHHHCCCCCCHHHHCCCC Q ss_conf 99987999758988---2346775023525998425543036887875322001220000000143 Q gi|254780398|r 46 LDGITVIEIGAGPG---NLTQMLLTLGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVD 108 (284) Q Consensus 46 ~~~~~VlEIGpG~G---~LT~~Ll~~~~~~v~aiEiD~~~~~~l~~~~~~~~~~~~ii~~Dal~~d 108 (284) .+++.+|=.|.+.| ++.+.|++.++ +|+...++..-.+.+.+ +...++..+.+|..+.+ T Consensus 3 L~gK~alVTGas~GIG~aia~~la~~Ga-~V~~~~r~~~~~~~~~~---~~~~~~~~~~~Dv~~~~ 64 (256) T 1k2w_A 3 LDGKTALITGSARGIGRAFAEAYVREGA-RVAIADINLEAARATAA---EIGPAACAIALDVTDQA 64 (256) T ss_dssp TTTEEEEEETCSSHHHHHHHHHHHHTTE-EEEEEESCHHHHHHHHH---HHCTTEEEEECCTTCHH T ss_pred CCCCEEEEECCCCHHHHHHHHHHHHCCC-EEEEEECCHHHHHHHHH---HHCCCEEEEEEECCCHH T ss_conf 8999899938886899999999998799-89999798999999999---85895699997389999 No 438 >3c4a_A Probable tryptophan hydroxylase VIOD; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; HET: FAD; 2.30A {Chromobacterium violaceum atcc 12472} Probab=30.39 E-value=25 Score=14.77 Aligned_cols=34 Identities=24% Similarity=0.349 Sum_probs=24.3 Q ss_pred EEEEECCCCCHHHHHH--HHCCC-CEEEEECCCCCCH Q ss_conf 7999758988234677--50235-2599842554303 Q gi|254780398|r 50 TVIEIGAGPGNLTQML--LTLGA-RKVIVIEKDQQFF 83 (284) Q Consensus 50 ~VlEIGpG~G~LT~~L--l~~~~-~~v~aiEiD~~~~ 83 (284) .|+=||.|++.||-++ .++.+ .+|+.+|.++... T Consensus 2 kV~IvGaGpaGl~~A~~La~~~~G~~V~v~Er~~~~~ 38 (381) T 3c4a_A 2 KILVIGAGPAGLVFASQLKQARPLWAIDIVEKNDEQE 38 (381) T ss_dssp EEEEECCSHHHHHHHHHHHHHCTTSEEEEECSSCTTC T ss_pred EEEEECCCHHHHHHHHHHHHCCCCCCEEEEECCCCCC T ss_conf 3799990889999999998569999589992799988 No 439 >2cqh_A IGF-II mRNA-binding protein 2 isoform A; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1 Probab=30.39 E-value=16 Score=15.98 Aligned_cols=21 Identities=19% Similarity=0.107 Sum_probs=17.7 Q ss_pred EEEECCCHHHHHHHHHHHHHH Q ss_conf 112023224678899999852 Q gi|254780398|r 120 RIIANLPYNIGTRLLFNWISA 140 (284) Q Consensus 120 ~vvgNLPYnIss~Il~~ll~~ 140 (284) ..|+|||++++..-|..++.. T Consensus 11 l~V~nlp~~~te~~l~~~F~~ 31 (93) T 2cqh_A 11 LYIGNLSPAVTADDLRQLFGD 31 (93) T ss_dssp EEEECCCTTCCHHHHHHHHHH T ss_pred EEEECCCCCCCHHHHHHHHHH T ss_conf 999488987879999998875 No 440 >3ex7_B RNA-binding protein 8A; protein-RNA complex, mRNA processing, mRNA splicing, mRNA transport, nonsense-mediated mRNA decay, nucleus; HET: ADP; 2.30A {Homo sapiens} PDB: 2j0q_D* Probab=30.37 E-value=23 Score=15.05 Aligned_cols=23 Identities=4% Similarity=-0.016 Sum_probs=18.8 Q ss_pred CEEEEECCCHHHHHHHHHHHHHH Q ss_conf 20112023224678899999852 Q gi|254780398|r 118 PIRIIANLPYNIGTRLLFNWISA 140 (284) Q Consensus 118 ~~~vvgNLPYnIss~Il~~ll~~ 140 (284) ....|||||+.++-.-|..++.. T Consensus 23 ~~l~V~nLp~~~~e~~l~~~F~~ 45 (126) T 3ex7_B 23 WILFVTGVHEEATEEDIHDKFAE 45 (126) T ss_dssp EEEEEESCCTTCCHHHHHHHHHT T ss_pred CEEEECCCCCCCCHHHHHHHHHH T ss_conf 88998889998889999999986 No 441 >1n4w_A CHOD, cholesterol oxidase; flavoenzyme, steroid metabolism, oxidoreductase, atomic resolution; HET: FAD; 0.92A {Streptomyces SP} SCOP: c.3.1.2 d.16.1.1 PDB: 1b4v_A* 1n1p_A* 1n4u_A* 1n4v_A* 1mxt_A* 2gew_A* 1b8s_A* 3gyi_A* 1cc2_A* 3gyj_A* 1ijh_A* 1cbo_A* 3b3r_A* 3b6d_A* 3cnj_A* Probab=30.34 E-value=24 Score=14.90 Aligned_cols=31 Identities=26% Similarity=0.435 Sum_probs=24.2 Q ss_pred CEEEEECCCCCHHHHH--HHHCCCCEEEEECCCC Q ss_conf 8799975898823467--7502352599842554 Q gi|254780398|r 49 ITVIEIGAGPGNLTQM--LLTLGARKVIVIEKDQ 80 (284) Q Consensus 49 ~~VlEIGpG~G~LT~~--Ll~~~~~~v~aiEiD~ 80 (284) -.|+=||.|+|.++-+ |++.+ ++|..+|.-. T Consensus 6 ~dvIVVGsG~aG~~~A~~La~~g-~~VLvlEaG~ 38 (504) T 1n4w_A 6 VPAVVIGTGYGAAVSALRLGEAG-VQTLMLEMGQ 38 (504) T ss_dssp EEEEEECCSHHHHHHHHHHHHTT-CCEEEEESSC T ss_pred CCEEEECCCHHHHHHHHHHHHCC-CEEEEEECCC T ss_conf 95999796888999999998686-9499995789 No 442 >2do0_A HnRNP M, heterogeneous nuclear ribonucleoprotein M; RNA recognition motif, RRM, RNA binding domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens} Probab=30.34 E-value=18 Score=15.76 Aligned_cols=22 Identities=32% Similarity=0.424 Sum_probs=18.3 Q ss_pred EEEEECCCHHHHHHHHHHHHHH Q ss_conf 0112023224678899999852 Q gi|254780398|r 119 IRIIANLPYNIGTRLLFNWISA 140 (284) Q Consensus 119 ~~vvgNLPYnIss~Il~~ll~~ 140 (284) ...|+|||++++..-|..++.. T Consensus 17 ~lfV~nLp~~~te~~L~~~F~~ 38 (114) T 2do0_A 17 TVFVANLDYKVGWKKLKEVFSM 38 (114) T ss_dssp CEEEESCCTTCCHHHHHHHHTT T ss_pred EEEECCCCCCCCHHHHHHHHHH T ss_conf 9998089998899999999997 No 443 >2cpz_A CUG triplet repeat RNA-binding protein 1; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 2rq4_A 2rqc_A Probab=30.32 E-value=16 Score=15.94 Aligned_cols=22 Identities=23% Similarity=0.312 Sum_probs=18.0 Q ss_pred EEEEECCCHHHHHHHHHHHHHH Q ss_conf 0112023224678899999852 Q gi|254780398|r 119 IRIIANLPYNIGTRLLFNWISA 140 (284) Q Consensus 119 ~~vvgNLPYnIss~Il~~ll~~ 140 (284) ...|+|||++++-.-|..++.. T Consensus 27 ~l~V~nLp~~~te~~l~~~F~~ 48 (115) T 2cpz_A 27 NLFIYHLPQEFGDQDLLQMFMP 48 (115) T ss_dssp CEEEESCCSSCCHHHHHHHHGG T ss_pred EEEEECCCCCCCHHHHHHHHHC T ss_conf 9999399997989999999843 No 444 >1xkq_A Short-chain reductase family member (5D234); parrallel beta-sheet of seven strands in the order 3214567; HET: NDP; 2.10A {Caenorhabditis elegans} SCOP: c.2.1.2 Probab=30.30 E-value=26 Score=14.76 Aligned_cols=62 Identities=18% Similarity=0.265 Sum_probs=43.4 Q ss_pred CCCCEEEEECCCCC---HHHHHHHHCCCCEEEEECCCCCCHHHHHHHHHHH---HCCCCCCHHHHCCCC Q ss_conf 99987999758988---2346775023525998425543036887875322---001220000000143 Q gi|254780398|r 46 LDGITVIEIGAGPG---NLTQMLLTLGARKVIVIEKDQQFFPILKDISSQH---PNRLEIIQDDALKVD 108 (284) Q Consensus 46 ~~~~~VlEIGpG~G---~LT~~Ll~~~~~~v~aiEiD~~~~~~l~~~~~~~---~~~~~ii~~Dal~~d 108 (284) .+++.+|=.|.+.| ++.+.+++.++ +|+...+++.-.+.+.+..... ..++..+.+|..+.+ T Consensus 4 L~gKvalITGas~GIG~aiA~~la~~Ga-~V~i~~r~~~~l~~~~~~l~~~~~~~~~~~~~~~Dv~~~~ 71 (280) T 1xkq_A 4 FSNKTVIITGSSNGIGRTTAILFAQEGA-NVTITGRSSERLEETRQIILKSGVSEKQVNSVVADVTTED 71 (280) T ss_dssp TTTCEEEETTCSSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHHHHTTTCCGGGEEEEECCTTSHH T ss_pred CCCCEEEEECCCCHHHHHHHHHHHHCCC-EEEEEECCHHHHHHHHHHHHHCCCCCCCEEEEEECCCCHH T ss_conf 6998799937686999999999998799-8999989889999999999965888885799990289999 No 445 >2dgp_A Bruno-like 4, RNA binding protein; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2dgq_A Probab=30.11 E-value=19 Score=15.63 Aligned_cols=21 Identities=19% Similarity=0.290 Sum_probs=17.7 Q ss_pred EEEECCCHHHHHHHHHHHHHH Q ss_conf 112023224678899999852 Q gi|254780398|r 120 RIIANLPYNIGTRLLFNWISA 140 (284) Q Consensus 120 ~vvgNLPYnIss~Il~~ll~~ 140 (284) ..|||||++++..-|..++.. T Consensus 16 lfV~nLp~~~~e~~l~~~F~~ 36 (106) T 2dgp_A 16 LFIGQIPRNLDEKDLKPLFEE 36 (106) T ss_dssp EEEESCCTTCCHHHHHHHHHH T ss_pred EEEECCCCCCCHHHHHHHHHH T ss_conf 999799997999999999987 No 446 >1x4h_A RNA-binding protein 28; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1 Probab=30.05 E-value=22 Score=15.20 Aligned_cols=23 Identities=17% Similarity=0.192 Sum_probs=19.0 Q ss_pred CEEEEECCCHHHHHHHHHHHHHH Q ss_conf 20112023224678899999852 Q gi|254780398|r 118 PIRIIANLPYNIGTRLLFNWISA 140 (284) Q Consensus 118 ~~~vvgNLPYnIss~Il~~ll~~ 140 (284) ....|+|||+.++-.-|..++.. T Consensus 16 ~tlfV~nLp~~~te~~l~~~F~~ 38 (111) T 1x4h_A 16 KTVFIRNLSFDSEEEALGEVLQQ 38 (111) T ss_dssp CCEEEESCCTTCCHHHHHHHHHT T ss_pred CEEEECCCCCCCCHHHHHHHHHH T ss_conf 99998899997889999999998 No 447 >3fg2_P Putative rubredoxin reductase; ferredoxin reductase, RPA3782, FAD, flavoprotein, oxidoreductase; HET: FAD; 2.20A {Rhodopseudomonas palustris} Probab=30.04 E-value=26 Score=14.73 Aligned_cols=35 Identities=31% Similarity=0.264 Sum_probs=17.8 Q ss_pred CCCEEEEECCCCCHHHHH--HHHCCCCEEEEECCCCCC Q ss_conf 998799975898823467--750235259984255430 Q gi|254780398|r 47 DGITVIEIGAGPGNLTQM--LLTLGARKVIVIEKDQQF 82 (284) Q Consensus 47 ~~~~VlEIGpG~G~LT~~--Ll~~~~~~v~aiEiD~~~ 82 (284) ....++=||.|...+..+ +...+ .+++.+|..++. T Consensus 141 ~~~~vvvvGgG~~g~e~A~~l~~~g-~~vt~i~~~~~~ 177 (404) T 3fg2_P 141 DKKHVVVIGAGFIGLEFAATARAKG-LEVDVVELAPRV 177 (404) T ss_dssp GCSEEEEECCSHHHHHHHHHHHHTT-CEEEEECSSSST T ss_pred CCCEEEEECCCCHHHHHHHHHHHCC-CCEEEEECCCCC T ss_conf 7978999888720357688887448-613799605433 No 448 >2e4g_A Tryptophan halogenase; flavin-binding, rebeccamycin biosynthesis, biosynthetic protein, flavoprotein; HET: TRP; 2.08A {Lechevalieria aerocolonigenes} PDB: 2o9z_A 2oa1_A* 2oal_A* 2oam_A Probab=29.85 E-value=26 Score=14.71 Aligned_cols=34 Identities=12% Similarity=0.249 Sum_probs=25.4 Q ss_pred CCEEEEECCCC-CHHHHHHHHCC---CCEEEEECCCCC Q ss_conf 98799975898-82346775023---525998425543 Q gi|254780398|r 48 GITVIEIGAGP-GNLTQMLLTLG---ARKVIVIEKDQQ 81 (284) Q Consensus 48 ~~~VlEIGpG~-G~LT~~Ll~~~---~~~v~aiEiD~~ 81 (284) -+.|+=||.|+ |.+|-.+|.+. -..|+.||.+.. T Consensus 25 i~kVvIVGgG~AG~~tAa~Lar~~~~~~~VtlIEs~~i 62 (550) T 2e4g_A 25 IDKILIVGGGTAGWMAASYLGKALQGTADITLLQAPDI 62 (550) T ss_dssp CCEEEEECCSHHHHHHHHHHHHHTTTSSEEEEEECCCC T ss_pred CCEEEEECCCHHHHHHHHHHHHHCCCCCEEEEEECCCC T ss_conf 46799989878999999999986599987999979998 No 449 >2e5j_A Methenyltetrahydrofolate synthetase domain containing; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens} Probab=29.75 E-value=25 Score=14.80 Aligned_cols=22 Identities=18% Similarity=0.107 Sum_probs=17.6 Q ss_pred EEEEECCCHHHHHHHHHHHHHH Q ss_conf 0112023224678899999852 Q gi|254780398|r 119 IRIIANLPYNIGTRLLFNWISA 140 (284) Q Consensus 119 ~~vvgNLPYnIss~Il~~ll~~ 140 (284) ...|||||++++..-|..++.. T Consensus 21 ~lfV~Nlp~~~~~~~L~~~F~~ 42 (97) T 2e5j_A 21 DVYVGNLPRDARVSDLKRALRE 42 (97) T ss_dssp EEEEECCCTTCCHHHHHHHHHH T ss_pred EEEEECCCCCCCHHHHHHHHHH T ss_conf 8999695997989999999998 No 450 >2e44_A Insulin-like growth factor 2 mRNA binding protein 3; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens} Probab=29.75 E-value=16 Score=15.95 Aligned_cols=23 Identities=17% Similarity=0.125 Sum_probs=18.5 Q ss_pred EEEEECCCHHHHHHHHHHHHHHH Q ss_conf 01120232246788999998520 Q gi|254780398|r 119 IRIIANLPYNIGTRLLFNWISAD 141 (284) Q Consensus 119 ~~vvgNLPYnIss~Il~~ll~~~ 141 (284) ...|+|||+.++..-|..++... T Consensus 17 ~l~V~nLp~~~~~~~l~~lf~~~ 39 (96) T 2e44_A 17 KLQIRNIPPHLQWEVLDSLLVQY 39 (96) T ss_dssp CEEEEEECSSSCHHHHHHHHHHH T ss_pred EEEEECCCCCCCHHHHHHHHHHC T ss_conf 99997989989999999999755 No 451 >2hvz_A Splicing factor, arginine/serine-rich 7; RRM, RNA binding protein; NMR {Homo sapiens} Probab=29.72 E-value=18 Score=15.78 Aligned_cols=20 Identities=25% Similarity=0.127 Sum_probs=16.9 Q ss_pred EEECCCHHHHHHHHHHHHHH Q ss_conf 12023224678899999852 Q gi|254780398|r 121 IIANLPYNIGTRLLFNWISA 140 (284) Q Consensus 121 vvgNLPYnIss~Il~~ll~~ 140 (284) .|||||++++..-|..++.. T Consensus 4 fVgnL~~~~te~~L~~~F~~ 23 (101) T 2hvz_A 4 YVGNLGTGAGKGELERAFSY 23 (101) T ss_dssp EEECCCSSCSHHHHHHHHHH T ss_pred EEECCCCCCCHHHHHHHHHH T ss_conf 99799987989999999731 No 452 >1fht_A U1A117, U1 small nuclear ribonucleoprotein A; RNP domain, spliceosome; NMR {Homo sapiens} SCOP: d.58.7.1 Probab=29.70 E-value=11 Score=17.08 Aligned_cols=21 Identities=24% Similarity=0.078 Sum_probs=15.6 Q ss_pred CEEEEECCCHHHHHHHHHHHH Q ss_conf 201120232246788999998 Q gi|254780398|r 118 PIRIIANLPYNIGTRLLFNWI 138 (284) Q Consensus 118 ~~~vvgNLPYnIss~Il~~ll 138 (284) ....|||||++++..-|..++ T Consensus 9 ~tl~V~nLp~~~te~~L~~~l 29 (116) T 1fht_A 9 HTIYINNLNEKIKKDELKKSL 29 (116) T ss_dssp SEEEECCSCTTCCSSSHHHHH T ss_pred CEEEEECCCCCCCHHHHHHHH T ss_conf 999995999999999999999 No 453 >2adc_A Polypyrimidine tract-binding protein 1; RBD, RRM, protein-RNA complex, RNA binding protein/RNA complex; NMR {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 2evz_A Probab=29.63 E-value=26 Score=14.69 Aligned_cols=21 Identities=19% Similarity=0.188 Sum_probs=12.3 Q ss_pred EEEEECCCHHHHHHHHHHHHH Q ss_conf 011202322467889999985 Q gi|254780398|r 119 IRIIANLPYNIGTRLLFNWIS 139 (284) Q Consensus 119 ~~vvgNLPYnIss~Il~~ll~ 139 (284) ...|+||||.++..-|..++. T Consensus 153 ~l~V~nlp~~~te~~l~~~F~ 173 (229) T 2adc_A 153 TLHLSNIPPSVSEEDLKVLFS 173 (229) T ss_dssp EEEEECCCTTCCHHHHHHHHH T ss_pred EEEEECCCCCCCHHHHHHHHC T ss_conf 089956896444455520310 No 454 >3ksu_A 3-oxoacyl-acyl carrier protein reductase; structural genomics, PSI-2, dehydrogenase, protein structure initiative; 2.30A {Oenococcus oeni psu-1} Probab=29.43 E-value=26 Score=14.67 Aligned_cols=62 Identities=11% Similarity=0.100 Sum_probs=39.0 Q ss_pred CCCCEEEEECCCCC---HHHHHHHHCCCCEEEEECCCCCC---HHHHHHHHHHHHCCCCCCHHHHCCCC Q ss_conf 99987999758988---23467750235259984255430---36887875322001220000000143 Q gi|254780398|r 46 LDGITVIEIGAGPG---NLTQMLLTLGARKVIVIEKDQQF---FPILKDISSQHPNRLEIIQDDALKVD 108 (284) Q Consensus 46 ~~~~~VlEIGpG~G---~LT~~Ll~~~~~~v~aiEiD~~~---~~~l~~~~~~~~~~~~ii~~Dal~~d 108 (284) .+++.+|=-|.+.| ++.+.|++.++ +|+...+..+- ++.+.+.......++..+.+|+.+.+ T Consensus 9 L~gKvalITGas~GIG~aiA~~la~~Ga-~Vvi~~~~~~~~~~~~~~~~~i~~~g~~~~~~~~Dv~~~~ 76 (262) T 3ksu_A 9 LKNKVIVIAGGIKNLGALTAKTFALESV-NLVLHYHQAKDSDTANKLKDELEDQGAKVALYQSDLSNEE 76 (262) T ss_dssp CTTCEEEEETCSSHHHHHHHHHHTTSSC-EEEEEESCGGGHHHHHHHHHHHHTTTCEEEEEECCCCSHH T ss_pred CCCCEEEEECCCCHHHHHHHHHHHHCCC-EEEEECCCCCCHHHHHHHHHHHHHCCCEEEEEECCCCCHH T ss_conf 9999899938987899999999998699-8999808867989999999999963983999976799999 No 455 >1x5t_A Splicing factor 3B subunit 4; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1 Probab=29.40 E-value=26 Score=14.75 Aligned_cols=21 Identities=38% Similarity=0.510 Sum_probs=17.7 Q ss_pred EEEECCCHHHHHHHHHHHHHH Q ss_conf 112023224678899999852 Q gi|254780398|r 120 RIIANLPYNIGTRLLFNWISA 140 (284) Q Consensus 120 ~vvgNLPYnIss~Il~~ll~~ 140 (284) ..|||||+.++..-|..++.. T Consensus 8 lfV~nLp~~~te~~L~~~F~~ 28 (96) T 1x5t_A 8 IFIGNLDPEIDEKLLYDTFSA 28 (96) T ss_dssp EEEECCCTTCCHHHHHHHHHT T ss_pred EEEECCCCCCCHHHHHHHHHH T ss_conf 999499985889999999852 No 456 >2weu_A Tryptophan 5-halogenase; regioselectivity, antifungal protein; HET: TRP; 1.70A {Streptomyces rugosporus} PDB: 2wet_A* 2wes_A* Probab=29.37 E-value=22 Score=15.15 Aligned_cols=32 Identities=25% Similarity=0.414 Sum_probs=21.7 Q ss_pred CEEEEECCCC-CHHHHHHHHCC---CCEEEEECCCC Q ss_conf 8799975898-82346775023---52599842554 Q gi|254780398|r 49 ITVIEIGAGP-GNLTQMLLTLG---ARKVIVIEKDQ 80 (284) Q Consensus 49 ~~VlEIGpG~-G~LT~~Ll~~~---~~~v~aiEiD~ 80 (284) ..|+=||.|+ |.+|-.+|.+. --.|+.||.+. T Consensus 3 k~VvIvGgG~AG~~tAa~La~~~~~~~~VtliEs~~ 38 (511) T 2weu_A 3 RSVVIVGGGTAGWMTASYLKAAFDDRIDVTLVESGN 38 (511) T ss_dssp CEEEEECCHHHHHHHHHHHHHHHGGGSEEEEEEC-- T ss_pred CEEEEECCCHHHHHHHHHHHHHCCCCCEEEEEECCC T ss_conf 669998987899999999998658998799996899 No 457 >1s79_A Lupus LA protein; RRM, alpha/beta, RNA binding protein, translation; NMR {Homo sapiens} SCOP: d.58.7.1 Probab=29.19 E-value=26 Score=14.71 Aligned_cols=24 Identities=13% Similarity=0.263 Sum_probs=18.9 Q ss_pred CEEEEECCCHHHHHHHHHHHHHHH Q ss_conf 201120232246788999998520 Q gi|254780398|r 118 PIRIIANLPYNIGTRLLFNWISAD 141 (284) Q Consensus 118 ~~~vvgNLPYnIss~Il~~ll~~~ 141 (284) ....|||||+++|..-|..++... T Consensus 12 rtvyV~nlp~~~t~~~l~~~F~~~ 35 (103) T 1s79_A 12 RSVYIKGFPTDATLDDIKEWLEDK 35 (103) T ss_dssp GCEEEECCCTTCCHHHHHHHHHTS T ss_pred CEEEEECCCCCCCHHHHHHHHHHH T ss_conf 889996989989999999999986 No 458 >2a3j_A U1 small nuclear ribonucleoprotein A; computationally designed protein, RRM, U1A, RNA binding protein; NMR {Homo sapiens} Probab=28.76 E-value=19 Score=15.49 Aligned_cols=20 Identities=15% Similarity=0.253 Sum_probs=15.3 Q ss_pred EEEEECCCHHHHHHHHHHHH Q ss_conf 01120232246788999998 Q gi|254780398|r 119 IRIIANLPYNIGTRLLFNWI 138 (284) Q Consensus 119 ~~vvgNLPYnIss~Il~~ll 138 (284) ...|||||++++..-|...+ T Consensus 31 ~l~V~NL~~~~te~dL~~~l 50 (127) T 2a3j_A 31 VVLITNINPEVPKEKLQALL 50 (127) T ss_dssp EEEEESCCTTSCHHHHHHHH T ss_pred EEEEECCCCCCCHHHHHHHH T ss_conf 89996999999999999999 No 459 >1wex_A Hypothetical protein (riken cDNA 2810036L13); structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.58.7.1 Probab=28.73 E-value=12 Score=16.74 Aligned_cols=25 Identities=16% Similarity=0.119 Sum_probs=19.3 Q ss_pred CCCEEEEECCCHHHHHHHHHHHHHH Q ss_conf 2220112023224678899999852 Q gi|254780398|r 116 SSPIRIIANLPYNIGTRLLFNWISA 140 (284) Q Consensus 116 ~~~~~vvgNLPYnIss~Il~~ll~~ 140 (284) ..+...|+|||+.++-.-|..++.. T Consensus 14 ~s~~l~v~nLp~~~te~dL~~lF~~ 38 (104) T 1wex_A 14 VSPVVHVRGLCESVVEADLVEALEK 38 (104) T ss_dssp CCSEEEEESCCSSCCHHHHHHHHTT T ss_pred CCCEEEEECCCCCCCHHHHHHHHHH T ss_conf 9998999699999999999999998 No 460 >2err_A Ataxin-2-binding protein 1; protein-RNA complex, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1 Probab=28.48 E-value=21 Score=15.34 Aligned_cols=22 Identities=14% Similarity=0.211 Sum_probs=17.6 Q ss_pred EEEEECCCHHHHHHHHHHHHHH Q ss_conf 0112023224678899999852 Q gi|254780398|r 119 IRIIANLPYNIGTRLLFNWISA 140 (284) Q Consensus 119 ~~vvgNLPYnIss~Il~~ll~~ 140 (284) ...|+|||++++.+-|..++.. T Consensus 31 ~l~V~nLp~~~te~~l~~~f~~ 52 (109) T 2err_A 31 RLHVSNIPFRFRDPDLRQMFGQ 52 (109) T ss_dssp EEEEESCCTTCCHHHHHHHGGG T ss_pred EEEEECCCCCCCHHHHHHHHHH T ss_conf 8999798986999999999986 No 461 >3bs9_A Nucleolysin TIA-1 isoform P40; RNA recognition motif, RRM, RNA binding domain, RBD, RNA splicing, apoptosis, phosphoprotein, RNA-binding; 1.95A {Homo sapiens} Probab=28.43 E-value=22 Score=15.15 Aligned_cols=21 Identities=14% Similarity=0.154 Sum_probs=17.4 Q ss_pred EEEECCCHHHHHHHHHHHHHH Q ss_conf 112023224678899999852 Q gi|254780398|r 120 RIIANLPYNIGTRLLFNWISA 140 (284) Q Consensus 120 ~vvgNLPYnIss~Il~~ll~~ 140 (284) ..|||||+.++..-|..+++. T Consensus 9 lfV~nL~~~~te~~l~~~F~~ 29 (87) T 3bs9_A 9 VFVGDLSPEITTAAIAAAFAP 29 (87) T ss_dssp EEEESCCTTCCHHHHHHHHGG T ss_pred EEEECCCCCCCHHHHHHHHHH T ss_conf 999699986979999999987 No 462 >2qa1_A PGAE, polyketide oxygenase PGAE; FAD, angucycline, aromatic hydroxylase, oxidoreductase; HET: FAD; 1.80A {Streptomyces SP} Probab=28.41 E-value=25 Score=14.84 Aligned_cols=36 Identities=28% Similarity=0.386 Sum_probs=26.4 Q ss_pred CCCCEEEEECCCCCHHHHHH--HHCCCCEEEEECCCCCC Q ss_conf 99987999758988234677--50235259984255430 Q gi|254780398|r 46 LDGITVIEIGAGPGNLTQML--LTLGARKVIVIEKDQQF 82 (284) Q Consensus 46 ~~~~~VlEIGpG~G~LT~~L--l~~~~~~v~aiEiD~~~ 82 (284) ..+-.||=||.|+..||-++ .+.+. .|+.+|.++.. T Consensus 9 ~~d~dVlIVGaGpaGL~~A~~Lar~Gi-~v~ViEr~~~~ 46 (500) T 2qa1_A 9 RSDAAVIVVGAGPAGMMLAGELRLAGV-EVVVLERLVER 46 (500) T ss_dssp CSBCSEEEECCSHHHHHHHHHHHHTTC-CEEEEESCCC- T ss_pred CCCCCEEEECCCHHHHHHHHHHHHCCC-CEEEECCCCCC T ss_conf 589998999919899999999987899-99998489998 No 463 >2fc9_A NCL protein; structure genomics, RRM_1 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Probab=28.35 E-value=19 Score=15.55 Aligned_cols=23 Identities=22% Similarity=0.302 Sum_probs=17.6 Q ss_pred CCEEEEECCCHHHHHHHHHHHHH Q ss_conf 22011202322467889999985 Q gi|254780398|r 117 SPIRIIANLPYNIGTRLLFNWIS 139 (284) Q Consensus 117 ~~~~vvgNLPYnIss~Il~~ll~ 139 (284) .....|+|||++++..-|..++. T Consensus 15 ~~tl~V~nLp~~~te~~l~~~F~ 37 (101) T 2fc9_A 15 SKTLVLSNLSYSATEETLQEVFE 37 (101) T ss_dssp CSEEEEESCCTTCCHHHHHHHCS T ss_pred CCEEEECCCCCCCCHHHHHHHHH T ss_conf 99999838999898999999975 No 464 >2cph_A RNA binding motif protein 19; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1 Probab=28.31 E-value=21 Score=15.31 Aligned_cols=22 Identities=18% Similarity=0.394 Sum_probs=18.0 Q ss_pred EEEEECCCHHHHHHHHHHHHHH Q ss_conf 0112023224678899999852 Q gi|254780398|r 119 IRIIANLPYNIGTRLLFNWISA 140 (284) Q Consensus 119 ~~vvgNLPYnIss~Il~~ll~~ 140 (284) ..+|+|||++++-.-|..++.. T Consensus 17 ~l~V~nLp~~~t~~~L~~~F~~ 38 (107) T 2cph_A 17 KILVRNIPFQANQREIRELFST 38 (107) T ss_dssp CEEEESCCTTCCHHHHHHHHHT T ss_pred EEEEECCCCCCCHHHHHHHHHH T ss_conf 9999389998999999999987 No 465 >2hgl_A HNRPF protein, heterogeneous nuclear ribonucleoprotein F; RNA recognition motif, G-tract, G-quadruplex, alternative, splicing, RNA binding protein; NMR {Homo sapiens} PDB: 2kfy_A Probab=28.29 E-value=17 Score=15.83 Aligned_cols=22 Identities=18% Similarity=0.383 Sum_probs=17.0 Q ss_pred EEEEECCCHHHHHHHHHHHHHH Q ss_conf 0112023224678899999852 Q gi|254780398|r 119 IRIIANLPYNIGTRLLFNWISA 140 (284) Q Consensus 119 ~~vvgNLPYnIss~Il~~ll~~ 140 (284) ...|+||||++|-.=|..++.. T Consensus 46 ~v~V~nLp~~~t~~dl~~~F~~ 67 (136) T 2hgl_A 46 VVKLRGLPWSCSVEDVQNFLSD 67 (136) T ss_dssp EEEEESCCTTCCHHHHHHHTTT T ss_pred EEEEECCCCCCCHHHHHHHHHC T ss_conf 9999598975999999999742 No 466 >1wf0_A TDP-43, TAR DNA-binding protein-43; structural genomics, RRM domain, riken structural genomics/proteomics initiative RSGI, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1 Probab=28.09 E-value=19 Score=15.49 Aligned_cols=23 Identities=9% Similarity=0.033 Sum_probs=18.3 Q ss_pred CEEEEECCCHHHHHHHHHHHHHH Q ss_conf 20112023224678899999852 Q gi|254780398|r 118 PIRIIANLPYNIGTRLLFNWISA 140 (284) Q Consensus 118 ~~~vvgNLPYnIss~Il~~ll~~ 140 (284) ....|||||++++..=|..++.. T Consensus 6 ~~lfVgnlp~~~te~dl~~~F~~ 28 (88) T 1wf0_A 6 SGVFVGRCTGDMTEDELREFFSQ 28 (88) T ss_dssp CEEEEESCCSSSCHHHHHHHSTT T ss_pred CEEEEECCCCCCCHHHHHHHHHH T ss_conf 89999699999999999999998 No 467 >2hgn_A Heterogeneous nuclear ribonucleoprotein F; RNA recognition motif, G-tract, G-quadruplex, alternative splicing, RNA binding protein; NMR {Homo sapiens} PDB: 2kg1_A Probab=28.04 E-value=19 Score=15.50 Aligned_cols=22 Identities=23% Similarity=0.460 Sum_probs=18.0 Q ss_pred EEEEECCCHHHHHHHHHHHHHH Q ss_conf 0112023224678899999852 Q gi|254780398|r 119 IRIIANLPYNIGTRLLFNWISA 140 (284) Q Consensus 119 ~~vvgNLPYnIss~Il~~ll~~ 140 (284) ...|+||||+.+..=|..++.. T Consensus 48 ~i~v~nLp~~~t~~dl~~~F~~ 69 (139) T 2hgn_A 48 CVHMRGLPYKATENDIYNFFSP 69 (139) T ss_dssp CEECCSCCTTCCHHHHHHHHCS T ss_pred EEEEECCCCCCCHHHHHHHHHC T ss_conf 8998399998989999998726 No 468 >1x5o_A RNA binding motif, single-stranded interacting protein 1; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1 Probab=27.95 E-value=14 Score=16.35 Aligned_cols=21 Identities=29% Similarity=0.411 Sum_probs=17.5 Q ss_pred EEEECCCHHHHHHHHHHHHHH Q ss_conf 112023224678899999852 Q gi|254780398|r 120 RIIANLPYNIGTRLLFNWISA 140 (284) Q Consensus 120 ~vvgNLPYnIss~Il~~ll~~ 140 (284) ..|+|||+.++..-|..++.. T Consensus 28 l~V~nLp~~~t~~~l~~~F~~ 48 (114) T 1x5o_A 28 LYISNLPLSMDEQELENMLKP 48 (114) T ss_dssp EEEESCCTTCCHHHHHHTTTT T ss_pred EEEECCCCCCCHHHHHHHHHH T ss_conf 999599998999999999997 No 469 >2dng_A Eukaryotic translation initiation factor 4H; RRM domain, RBD, structural genomics, NPPSFA; NMR {Mus musculus} Probab=27.92 E-value=18 Score=15.77 Aligned_cols=22 Identities=18% Similarity=0.215 Sum_probs=18.0 Q ss_pred EEEEECCCHHHHHHHHHHHHHH Q ss_conf 0112023224678899999852 Q gi|254780398|r 119 IRIIANLPYNIGTRLLFNWISA 140 (284) Q Consensus 119 ~~vvgNLPYnIss~Il~~ll~~ 140 (284) ...|||||++++-.=|..++.. T Consensus 17 ~lfv~nLp~~~te~~l~~~F~~ 38 (103) T 2dng_A 17 TAYVGNLPFNTVQGDIDAIFKD 38 (103) T ss_dssp EEEEESCCTTCCHHHHHHHTTT T ss_pred EEEEECCCCCCCHHHHHHHHHH T ss_conf 9999398985989999999860 No 470 >3o38_A Short chain dehydrogenase; tuberculosis, ortholog from A non-pathogenic dehydrogenase, structural genomics; 1.95A {Mycobacterium smegmatis} Probab=27.91 E-value=28 Score=14.50 Aligned_cols=63 Identities=22% Similarity=0.283 Sum_probs=42.3 Q ss_pred CCCCCEEEEECC---CCCH-HHHHHHHCCCCEEEEECCCCCCHHHHHHHHHHH-HCCCCCCHHHHCCCC Q ss_conf 899987999758---9882-346775023525998425543036887875322-001220000000143 Q gi|254780398|r 45 SLDGITVIEIGA---GPGN-LTQMLLTLGARKVIVIEKDQQFFPILKDISSQH-PNRLEIIQDDALKVD 108 (284) Q Consensus 45 ~~~~~~VlEIGp---G~G~-LT~~Ll~~~~~~v~aiEiD~~~~~~l~~~~~~~-~~~~~ii~~Dal~~d 108 (284) ..+++.+|=-|. |.|. +.+.+++.++ +|+...++..-.+.+.+..... .+++..+.+|+.+.+ T Consensus 19 ~L~gKvalITGasg~GIG~aia~~la~~Ga-~V~i~~r~~~~l~~~~~~i~~~~~~~~~~~~~Dv~~~~ 86 (266) T 3o38_A 19 LLKGKVVLVTAAAGTGIGSTTARRALLEGA-DVVISDYHERRLGETRDQLADLGLGRVEAVVCDVTSTE 86 (266) T ss_dssp TTTTCEEEESSCSSSSHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHHHHTTCSSCEEEEECCTTCHH T ss_pred CCCCCEEEEECCCCCHHHHHHHHHHHHCCC-EEEEEECCHHHHHHHHHHHHHHCCCCEEEEECCCCCHH T ss_conf 279997999499974899999999998799-89999798899999999998517984899991589999 No 471 >3dfz_A SIRC, precorrin-2 dehydrogenase; NAD dehydrogenase, cobalamin biosynthesis, NAD, oxidoreductase, porphyrin biosynthesis; 2.30A {Bacillus megaterium} Probab=27.70 E-value=28 Score=14.48 Aligned_cols=60 Identities=18% Similarity=0.302 Sum_probs=39.6 Q ss_pred CCCCEEEEECCCCCHHH--HHHHHCCCCEEEEECCCCCCHHHHHHHHHHHHCCCCCCHHHHCCCCHH Q ss_conf 99987999758988234--677502352599842554303688787532200122000000014315 Q gi|254780398|r 46 LDGITVIEIGAGPGNLT--QMLLTLGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFE 110 (284) Q Consensus 46 ~~~~~VlEIGpG~G~LT--~~Ll~~~~~~v~aiEiD~~~~~~l~~~~~~~~~~~~ii~~Dal~~d~~ 110 (284) .++..||=||.|.=+.. +.|++.+|+ |+.| .+.+.+.+.+.... ++++++..++-.-|+. T Consensus 29 L~~k~VLVVGgG~vA~rKi~~Ll~~ga~-VtVi--sp~~~~el~~l~~~--~~i~~~~r~~~~~dl~ 90 (223) T 3dfz_A 29 LKGRSVLVVGGGTIATRRIKGFLQEGAA-ITVV--APTVSAEINEWEAK--GQLRVKRKKVGEEDLL 90 (223) T ss_dssp CTTCCEEEECCSHHHHHHHHHHGGGCCC-EEEE--CSSCCHHHHHHHHT--TSCEEECSCCCGGGSS T ss_pred CCCCEEEEECCCHHHHHHHHHHHHCCCE-EEEE--ECCCCHHHHHHHHC--CCCEEEECCCCHHHCC T ss_conf 3998599989889999999999748997-9999--38899899999976--9969995688866718 No 472 >3nmr_A Cugbp ELAV-like family member 1; RRM, PRE-mRNA splicing, RNA binding protein-RNA complex; 1.85A {Homo sapiens} PDB: 3nna_A 3nnc_A 2dhs_A 3nnh_A Probab=27.58 E-value=22 Score=15.19 Aligned_cols=23 Identities=9% Similarity=-0.074 Sum_probs=16.5 Q ss_pred CEEEEECCCHHHHHHHHHHHHHH Q ss_conf 20112023224678899999852 Q gi|254780398|r 118 PIRIIANLPYNIGTRLLFNWISA 140 (284) Q Consensus 118 ~~~vvgNLPYnIss~Il~~ll~~ 140 (284) ...+|+|||++++..-|..++.. T Consensus 96 ~~i~v~~l~~~~~~~~l~~~f~~ 118 (175) T 3nmr_A 96 RKLFIGMISKKCTENDIRVMFSS 118 (175) T ss_dssp SEEEEESCCTTCCHHHHHHHHGG T ss_pred CCCCCCCCCCCHHHHHHHHHHHH T ss_conf 10001244433136789998762 No 473 >2a8x_A Dihydrolipoyl dehydrogenase, E3 component of alpha; lipoamide dehydrogenase, pyruvate dehydrogenase, alpha keto acid dehydrogenase; HET: FAD; 2.40A {Mycobacterium tuberculosis} PDB: 3ii4_A* Probab=27.50 E-value=29 Score=14.46 Aligned_cols=13 Identities=46% Similarity=0.958 Sum_probs=5.6 Q ss_pred EEEECCCCCHHHH Q ss_conf 9997589882346 Q gi|254780398|r 51 VIEIGAGPGNLTQ 63 (284) Q Consensus 51 VlEIGpG~G~LT~ 63 (284) |+=||.|++.+|- T Consensus 6 vvIIG~GpAG~~a 18 (464) T 2a8x_A 6 VVVLGAGPGGYVA 18 (464) T ss_dssp EEEECCSHHHHHH T ss_pred EEEECCCHHHHHH T ss_conf 8998989899999 No 474 >3cgv_A Geranylgeranyl reductase related protein; NP_393992.1, geranylgeranyl bacteriochlorophyll reductase- like FIXC homolog; HET: MSE FAD UNL; 1.60A {Thermoplasma acidophilum dsm 1728} Probab=27.47 E-value=29 Score=14.45 Aligned_cols=32 Identities=34% Similarity=0.604 Sum_probs=21.4 Q ss_pred EEEEECCCCCHHHHHH--HHCCCCEEEEECCCCCC Q ss_conf 7999758988234677--50235259984255430 Q gi|254780398|r 50 TVIEIGAGPGNLTQML--LTLGARKVIVIEKDQQF 82 (284) Q Consensus 50 ~VlEIGpG~G~LT~~L--l~~~~~~v~aiEiD~~~ 82 (284) .|+=||+|+..||-++ ++.+. +|+.+|..+.. T Consensus 6 DV~IVGaGpaGl~~A~~La~~G~-~V~viEr~~~~ 39 (397) T 3cgv_A 6 DVLVVGGGPGGSTAARYAAKYGL-KTLMIEKRPEI 39 (397) T ss_dssp EEEEECCSHHHHHHHHHHHHTTC-CEEEECSSSST T ss_pred CEEEECCCHHHHHHHHHHHHCCC-CEEEECCCCCC T ss_conf 88999948999999999997899-68999179988 No 475 >2cuy_A Malonyl COA-[acyl carrier protein] transacylase; transferase, structural genomics, NPPSFA; 2.10A {Thermus thermophilus HB8} Probab=27.42 E-value=29 Score=14.45 Aligned_cols=12 Identities=25% Similarity=0.354 Sum_probs=7.2 Q ss_pred ECCCCCHHHHHH Q ss_conf 758988234677 Q gi|254780398|r 54 IGAGPGNLTQML 65 (284) Q Consensus 54 IGpG~G~LT~~L 65 (284) +|--.|-+|-.. T Consensus 86 ~GhSlGE~aA~~ 97 (305) T 2cuy_A 86 AGHSLGEWTAHV 97 (305) T ss_dssp EESTHHHHHHHH T ss_pred CCCCCCHHHHHH T ss_conf 788866899999 No 476 >1whw_A Hypothetical protein riken cDNA 1200009A02; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1 Probab=27.35 E-value=22 Score=15.14 Aligned_cols=21 Identities=29% Similarity=0.295 Sum_probs=17.5 Q ss_pred EEEECCCHHHHHHHHHHHHHH Q ss_conf 112023224678899999852 Q gi|254780398|r 120 RIIANLPYNIGTRLLFNWISA 140 (284) Q Consensus 120 ~vvgNLPYnIss~Il~~ll~~ 140 (284) ..|+|||++++-.-|..++.. T Consensus 11 lfV~nL~~~~te~~l~~~F~~ 31 (99) T 1whw_A 11 LFVRNLSYTSSEEDLEKLFSA 31 (99) T ss_dssp EEEECCCTTCCHHHHHHHHHT T ss_pred EEEECCCCCCCHHHHHHHHHH T ss_conf 999798998999999999997 No 477 >2dnp_A RNA-binding protein 14; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Probab=27.29 E-value=22 Score=15.14 Aligned_cols=22 Identities=9% Similarity=0.078 Sum_probs=17.9 Q ss_pred EEEECCCHHHHHHHHHHHHHHH Q ss_conf 1120232246788999998520 Q gi|254780398|r 120 RIIANLPYNIGTRLLFNWISAD 141 (284) Q Consensus 120 ~vvgNLPYnIss~Il~~ll~~~ 141 (284) ..|||||++++..-|..++... T Consensus 12 lfV~nl~~~~te~~L~~~F~~~ 33 (90) T 2dnp_A 12 IFVGNVSAACTSQELRSLFERR 33 (90) T ss_dssp EEEESCCTTCCHHHHHHHHHHH T ss_pred EEEECCCCCCCHHHHHHHHHHH T ss_conf 9997999759999999999844 No 478 >1kyq_A Met8P, siroheme biosynthesis protein Met8; homodimer, oxidoreductase, lyase; HET: NAD; 2.20A {Saccharomyces cerevisiae} SCOP: c.2.1.11 e.37.1.1 Probab=27.18 E-value=29 Score=14.42 Aligned_cols=42 Identities=21% Similarity=0.431 Sum_probs=29.3 Q ss_pred CCCCEEEEECCCCCHHHH--HHHHCCCC-EEEEECCCCCCHHHHH Q ss_conf 999879997589882346--77502352-5998425543036887 Q gi|254780398|r 46 LDGITVIEIGAGPGNLTQ--MLLTLGAR-KVIVIEKDQQFFPILK 87 (284) Q Consensus 46 ~~~~~VlEIGpG~G~LT~--~Ll~~~~~-~v~aiEiD~~~~~~l~ 87 (284) ..+..||=||.|.-+..+ .|++.+|+ .|++=|+++.+..... T Consensus 11 l~~k~vLVVGgG~VA~rK~~~LL~agA~vtVVsp~~~~el~~l~~ 55 (274) T 1kyq_A 11 LKDKRILLIGGGEVGLTRLYKLMPTGCKLTLVSPDLHKSIIPKFG 55 (274) T ss_dssp CTTCEEEEEEESHHHHHHHHHHGGGTCEEEEEEEEECTTHHHHHC T ss_pred ECCCEEEEECCCHHHHHHHHHHHHCCCEEEEEECCCCHHHHHHHH T ss_conf 289869998998999999999996899699992998889999875 No 479 >2dnz_A Probable RNA-binding protein 23; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} Probab=26.81 E-value=28 Score=14.48 Aligned_cols=21 Identities=19% Similarity=0.313 Sum_probs=17.5 Q ss_pred EEEECCCHHHHHHHHHHHHHH Q ss_conf 112023224678899999852 Q gi|254780398|r 120 RIIANLPYNIGTRLLFNWISA 140 (284) Q Consensus 120 ~vvgNLPYnIss~Il~~ll~~ 140 (284) ..|||||++++-.-|..++.. T Consensus 8 lfV~nLp~~~te~~l~~~f~~ 28 (95) T 2dnz_A 8 LYVGSLHFNITEDMLRGIFEP 28 (95) T ss_dssp EEEESCCTTCCHHHHHHHHTT T ss_pred EEEECCCCCCCHHHHHHHHHH T ss_conf 999299996889999999997 No 480 >1oo0_B CG8781-PA, drosophila Y14; RNA recognition motif, splicing, protein complex, EXON junction complex, signaling protein; 1.85A {Drosophila melanogaster} SCOP: d.58.7.1 PDB: 2hyi_B* 2j0s_D* 2xb2_D* Probab=26.75 E-value=29 Score=14.37 Aligned_cols=22 Identities=5% Similarity=0.013 Sum_probs=18.2 Q ss_pred EEEEECCCHHHHHHHHHHHHHH Q ss_conf 0112023224678899999852 Q gi|254780398|r 119 IRIIANLPYNIGTRLLFNWISA 140 (284) Q Consensus 119 ~~vvgNLPYnIss~Il~~ll~~ 140 (284) ...|||||++++..=|..++.. T Consensus 28 ~l~V~nlp~~~~e~~l~~~f~~ 49 (110) T 1oo0_B 28 ILFVTSIHEEAQEDEIQEKFCD 49 (110) T ss_dssp EEEEESCCTTCCHHHHHHHHGG T ss_pred EEEECCCCCCCCHHHHHHHHHH T ss_conf 9999179998999999999973 No 481 >1fxl_A Paraneoplastic encephalomyelitis antigen HUD; protein-RNA complex, AU-rich element, transcription/RNA complex; 1.80A {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 1g2e_A 1fnx_H 1d8z_A 1d9a_A 3hi9_A Probab=26.73 E-value=23 Score=15.03 Aligned_cols=21 Identities=19% Similarity=0.257 Sum_probs=16.0 Q ss_pred EEEECCCHHHHHHHHHHHHHH Q ss_conf 112023224678899999852 Q gi|254780398|r 120 RIIANLPYNIGTRLLFNWISA 140 (284) Q Consensus 120 ~vvgNLPYnIss~Il~~ll~~ 140 (284) .+|+|||++++-.-|..++.. T Consensus 91 i~v~nl~~~~~~~~i~~~f~~ 111 (167) T 1fxl_A 91 LYVSGLPKTMTQKELEQLFSQ 111 (167) T ss_dssp EEEESCCTTCCHHHHHHHHGG T ss_pred EEEECCCCCCCHHHHHHHHHH T ss_conf 999477787999999999987 No 482 >2qfj_A FBP-interacting repressor; protein-DNA complex; HET: DNA; 2.10A {Homo sapiens} PDB: 2kxf_A 2kxh_A Probab=26.73 E-value=23 Score=15.02 Aligned_cols=21 Identities=10% Similarity=0.078 Sum_probs=16.4 Q ss_pred EEEECCCHHHHHHHHHHHHHH Q ss_conf 112023224678899999852 Q gi|254780398|r 120 RIIANLPYNIGTRLLFNWISA 140 (284) Q Consensus 120 ~vvgNLPYnIss~Il~~ll~~ 140 (284) .+|+|||+.+|..-|..+++. T Consensus 128 l~V~nLp~~~t~~~l~~~f~~ 148 (216) T 2qfj_A 128 IYVASVHQDLSDDDIKSVFEA 148 (216) T ss_dssp EEEECCCTTCCHHHHHHHHTT T ss_pred EEEECCCCCCHHHHHHHHHCC T ss_conf 999368666407778666403 No 483 >1wi8_A EIF-4B, eukaryotic translation initiation factor 4B; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Homo sapiens} SCOP: d.58.7.1 Probab=26.63 E-value=17 Score=15.79 Aligned_cols=22 Identities=18% Similarity=0.516 Sum_probs=18.2 Q ss_pred EEEEECCCHHHHHHHHHHHHHH Q ss_conf 0112023224678899999852 Q gi|254780398|r 119 IRIIANLPYNIGTRLLFNWISA 140 (284) Q Consensus 119 ~~vvgNLPYnIss~Il~~ll~~ 140 (284) ...|+||||.++-.-|..++.. T Consensus 17 tv~V~nlp~~~te~~l~~~F~~ 38 (104) T 1wi8_A 17 TAFLGNLPYDVTEESIKEFFRG 38 (104) T ss_dssp EEEEESCCSSCCHHHHHHHTTT T ss_pred EEEEECCCCCCCHHHHHHHHHH T ss_conf 8999199986879999999997 No 484 >3grk_A Enoyl-(acyl-carrier-protein) reductase (NADH); ssgcid, niaid, structural genomics, seattle structural genomics center for infectious disease; 2.35A {Brucella melitensis} Probab=26.59 E-value=30 Score=14.35 Aligned_cols=63 Identities=13% Similarity=0.158 Sum_probs=42.1 Q ss_pred CCCCCCCEEEEECC----CCC-HHHHHHHHCCCCEEEEECCCCCCHHHHHHHHHHHHCCCCCCHHHHCCC Q ss_conf 19899987999758----988-234677502352599842554303688787532200122000000014 Q gi|254780398|r 43 SGSLDGITVIEIGA----GPG-NLTQMLLTLGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKV 107 (284) Q Consensus 43 ~~~~~~~~VlEIGp----G~G-~LT~~Ll~~~~~~v~aiEiD~~~~~~l~~~~~~~~~~~~ii~~Dal~~ 107 (284) .+..+++.+|=-|. |.| ++.+.|++.++ +|+...+++...+.+++..... ++...+.+|..+- T Consensus 26 ~g~L~GK~alITGass~~GIG~aiA~~la~~Ga-~Vvi~~r~~~~~~~~~~l~~~~-~~~~~~~~Dv~~~ 93 (293) T 3grk_A 26 SGLLQGKRGLILGVANNRSIAWGIAKAAREAGA-ELAFTYQGDALKKRVEPLAEEL-GAFVAGHCDVADA 93 (293) T ss_dssp -CTTTTCEEEEECCCSSSSHHHHHHHHHHHTTC-EEEEEECSHHHHHHHHHHHHHH-TCEEEEECCTTCH T ss_pred CCCCCCCEEEEECCCCCCHHHHHHHHHHHHCCC-EEEEEECCHHHHHHHHHHHHCC-CCEEEEECCCCCH T ss_conf 877699879998999995599999999998699-9999838779999999998506-9559986576989 No 485 >1njr_A 32.1 kDa protein in ADH3-RCA1 intergenic region; structural genomics, dimer, two domain organization, PSI, protein structure initiative; HET: XYL; 1.90A {Saccharomyces cerevisiae} SCOP: c.50.1.2 PDB: 1txz_A* 1ty8_A* Probab=26.50 E-value=24 Score=14.88 Aligned_cols=51 Identities=16% Similarity=0.217 Sum_probs=33.6 Q ss_pred CCHHHHHHHHCC--CCEEEEECCCCCCHHHHHHHHH----HHHCCCCCCHHHHCCCC Q ss_conf 882346775023--5259984255430368878753----22001220000000143 Q gi|254780398|r 58 PGNLTQMLLTLG--ARKVIVIEKDQQFFPILKDISS----QHPNRLEIIQDDALKVD 108 (284) Q Consensus 58 ~G~LT~~Ll~~~--~~~v~aiEiD~~~~~~l~~~~~----~~~~~~~ii~~Dal~~d 108 (284) +|.|.+.-+--+ .-+++.++.|+.+++..++.+. .....+++++|+++.+. T Consensus 2 ~~~~~~~~~~~~~~~mkliL~d~n~~l~~aW~~~~~~~~~~~~~~v~i~~g~i~~~~ 58 (284) T 1njr_A 2 TGSLNRHSLLNGVKKMRIILCDTNEVVTNLWQESIPHAYIQNDKYLCIHHGHLQSLM 58 (284) T ss_dssp --------------CCEEEEEESCHHHHHHHHHHCC-------CCEEEEESCHHHHH T ss_pred CCCCHHHHHHCCHHHEEEEEECCCHHHHHHHHHHCCCCCCCCCCCEEEEECCHHHHH T ss_conf 874007777615111279998699899999998622001278986699957688877 No 486 >1wez_A HnRNP H', FTP-3, heterogeneous nuclear ribonucleoprotein H'; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: d.58.7.1 Probab=26.46 E-value=17 Score=15.88 Aligned_cols=24 Identities=21% Similarity=0.405 Sum_probs=18.3 Q ss_pred CCEEEEECCCHHHHHHHHHHHHHH Q ss_conf 220112023224678899999852 Q gi|254780398|r 117 SPIRIIANLPYNIGTRLLFNWISA 140 (284) Q Consensus 117 ~~~~vvgNLPYnIss~Il~~ll~~ 140 (284) .-...|+||||+++-.=|..++.. T Consensus 15 g~~v~v~nLP~~~teedl~~~F~~ 38 (102) T 1wez_A 15 GHCVHMRGLPYRATENDIYNFFSP 38 (102) T ss_dssp SCEEEEESCCTTCCHHHHHHSSCS T ss_pred CCEEEEECCCCCCCHHHHHHHHHC T ss_conf 738998498998989999998506 No 487 >2jhf_A Alcohol dehydrogenase E chain; oxidoreductase, metal coordination, NAD, zinc, inhibition, acetylation, metal-binding; HET: NAD; 1.0A {Equus caballus} SCOP: b.35.1.2 c.2.1.1 PDB: 1adc_A* 1adf_A* 1adg_A* 1adb_A* 1bto_A* 1heu_A* 1hf3_A* 1hld_A* 1lde_A* 1ldy_A* 1mg0_A* 1n92_A* 1p1r_A* 1ye3_A 1het_A* 2jhg_A* 2ohx_A* 2oxi_A* 3bto_A* 5adh_A* ... Probab=26.18 E-value=30 Score=14.31 Aligned_cols=53 Identities=21% Similarity=0.278 Sum_probs=36.6 Q ss_pred HHHHHHCCCCCCCEEEEECCCCCHHH-HHHHH-CCCCEEEEECCCCCCHHHHHHH Q ss_conf 99999719899987999758988234-67750-2352599842554303688787 Q gi|254780398|r 37 KKIAESSGSLDGITVIEIGAGPGNLT-QMLLT-LGARKVIVIEKDQQFFPILKDI 89 (284) Q Consensus 37 ~~iv~~~~~~~~~~VlEIGpG~G~LT-~~Ll~-~~~~~v~aiEiD~~~~~~l~~~ 89 (284) ....+.+++.++++|+=+|+|...+. -.+++ .++.+|++++.++.-.+.+++. T Consensus 181 ~~~~~~~~~~~g~~VlV~GaG~~g~~a~~~ak~~g~~~Vi~~~~~~~~~~~~~~~ 235 (374) T 2jhf_A 181 GSAVKVAKVTQGSTCAVFGLGGVGLSVIMGCKAAGAARIIGVDINKDKFAKAKEV 235 (374) T ss_dssp HHHHTTTCCCTTCEEEEECCSHHHHHHHHHHHHTTCSEEEEECSCGGGHHHHHHT T ss_pred HHHHHHCCCCCCCEEEEECCCHHHHHHHHHHHHCCCCEEEEEECCHHHHHHHHHC T ss_conf 8899851899999899989977899999999980998799996888999999974 No 488 >1ebd_A E3BD, dihydrolipoamide dehydrogenase; redox-active center, glycolysis, oxidoreductase; HET: FAD; 2.60A {Geobacillus stearothermophilus} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 Probab=26.15 E-value=30 Score=14.30 Aligned_cols=28 Identities=39% Similarity=0.687 Sum_probs=10.3 Q ss_pred EEEECCCCCHHH--HHHHHCCCCEEEEECCC Q ss_conf 999758988234--67750235259984255 Q gi|254780398|r 51 VIEIGAGPGNLT--QMLLTLGARKVIVIEKD 79 (284) Q Consensus 51 VlEIGpG~G~LT--~~Ll~~~~~~v~aiEiD 79 (284) |+=||.|++.+| ..+.+.+. +|+.||.+ T Consensus 6 viIIG~GpAG~~aA~~l~~~g~-~V~liEk~ 35 (455) T 1ebd_A 6 TLVVGAGPGGYVAAIRAAQLGQ-KVTIVEKG 35 (455) T ss_dssp EEEECCSHHHHHHHHHHHHTTC-CEEEEESS T ss_pred EEEECCCHHHHHHHHHHHHCCC-CEEEEECC T ss_conf 9998888899999999985979-19999369 No 489 >1fjc_A Nucleolin RBD2, protein C23; RNP, RRM, RNA binding domain, nucleolus, structural protein; NMR {Mesocricetus auratus} SCOP: d.58.7.1 Probab=26.02 E-value=25 Score=14.83 Aligned_cols=24 Identities=21% Similarity=0.220 Sum_probs=18.5 Q ss_pred CCEEEEECCCHHHHHHHHHHHHHH Q ss_conf 220112023224678899999852 Q gi|254780398|r 117 SPIRIIANLPYNIGTRLLFNWISA 140 (284) Q Consensus 117 ~~~~vvgNLPYnIss~Il~~ll~~ 140 (284) ....+|+|||++++-.=|..++.. T Consensus 16 ~~tl~V~nLp~~~t~~~l~~~F~~ 39 (96) T 1fjc_A 16 ARTLLAKNLSFNITEDELKEVFED 39 (96) T ss_dssp GGEEEEESCCSSCCHHHHHHHHCS T ss_pred CCEEEECCCCCCCCHHHHHHHHHH T ss_conf 999998289998999999999986 No 490 >3cw1_K U1 small nuclear ribonucleoprotein 70 kDa; PRE-mRNA splicing, spliceosome, RNA-binding domain, SM fold, zinc finger, RNA recognition motif; 5.49A {Homo sapiens} Probab=25.97 E-value=23 Score=15.04 Aligned_cols=22 Identities=14% Similarity=0.137 Sum_probs=18.1 Q ss_pred EEEEECCCHHHHHHHHHHHHHH Q ss_conf 0112023224678899999852 Q gi|254780398|r 119 IRIIANLPYNIGTRLLFNWISA 140 (284) Q Consensus 119 ~~vvgNLPYnIss~Il~~ll~~ 140 (284) ..+||||||+++-.-|..++.. T Consensus 104 ~lfV~nl~~~~te~~l~~~F~~ 125 (216) T 3cw1_K 104 TLFVARVNYDTTESKLRREFEV 125 (216) T ss_pred EEEECCCCCCCCHHHHHHHHHH T ss_conf 8998089987889999999985 No 491 >2xnq_A Nuclear polyadenylated RNA-binding protein 3; transcription termination, RNA processi recognition, RRM; HET: CAF; 1.30A {Saccharomyces cerevisiae} PDB: 2xnr_A Probab=25.93 E-value=23 Score=14.99 Aligned_cols=21 Identities=38% Similarity=0.564 Sum_probs=16.3 Q ss_pred EEEECCCH-HHHHHHHHHHHHH Q ss_conf 11202322-4678899999852 Q gi|254780398|r 120 RIIANLPY-NIGTRLLFNWISA 140 (284) Q Consensus 120 ~vvgNLPY-nIss~Il~~ll~~ 140 (284) ..|||||+ +++..-|..++.. T Consensus 25 l~V~nLp~~~~te~dL~~~F~~ 46 (97) T 2xnq_A 25 LFIGNLPLKNVSKEDLFRIFSP 46 (97) T ss_dssp EEEESCCSSCCCHHHHHHHHGG T ss_pred EEEECCCCCCCCHHHHHHHHHH T ss_conf 9996999898999999999885 No 492 >2jrs_A RNA-binding protein 39; RNA binding motif of RBM39_human (caper), RRM2 domain, solution structure, structural genomics, PSI-2; NMR {Homo sapiens} Probab=25.92 E-value=21 Score=15.26 Aligned_cols=21 Identities=19% Similarity=0.313 Sum_probs=17.4 Q ss_pred EEEECCCHHHHHHHHHHHHHH Q ss_conf 112023224678899999852 Q gi|254780398|r 120 RIIANLPYNIGTRLLFNWISA 140 (284) Q Consensus 120 ~vvgNLPYnIss~Il~~ll~~ 140 (284) ..|||||+.++..-|..++.. T Consensus 29 lfV~nLp~~~~~~~L~~~F~~ 49 (108) T 2jrs_A 29 LYVGSLHFNITEDMLRGIFEP 49 (108) T ss_dssp EEEECCCSSCCHHHHHHHHTT T ss_pred EEEECCCCCCCHHHHHHHHHH T ss_conf 999795997989999999987 No 493 >3n9u_C Cleavage and polyadenylation specificity factor S; protein-protein complex, coexpression, heterotetramer, mRNA maturation, mRNA cleavage; 1.92A {Homo sapiens} Probab=25.89 E-value=24 Score=14.88 Aligned_cols=22 Identities=9% Similarity=0.155 Sum_probs=17.4 Q ss_pred EEEEECCCHHHHHHHHHHHHHH Q ss_conf 0112023224678899999852 Q gi|254780398|r 119 IRIIANLPYNIGTRLLFNWISA 140 (284) Q Consensus 119 ~~vvgNLPYnIss~Il~~ll~~ 140 (284) ..+||||||.++..-|..++.. T Consensus 57 ~i~VgnLp~~~te~~L~~~F~~ 78 (156) T 3n9u_C 57 AVYVGSFSWWTTDQQLIQVIRS 78 (156) T ss_dssp EEEEECCCTTCCHHHHHHHHHH T ss_pred EEEECCCCCCCCHHHHHHHHHH T ss_conf 8998789996899999999975 No 494 >2qa2_A CABE, polyketide oxygenase CABE; FAD, angucycline, aromatic hydroxylase, oxidoreductase; HET: FAD; 2.70A {Streptomyces} Probab=25.71 E-value=31 Score=14.25 Aligned_cols=35 Identities=34% Similarity=0.406 Sum_probs=26.0 Q ss_pred CCCEEEEECCCCCHHHHHH--HHCCCCEEEEECCCCCC Q ss_conf 9987999758988234677--50235259984255430 Q gi|254780398|r 47 DGITVIEIGAGPGNLTQML--LTLGARKVIVIEKDQQF 82 (284) Q Consensus 47 ~~~~VlEIGpG~G~LT~~L--l~~~~~~v~aiEiD~~~ 82 (284) .+-.|+=||.|+..||-++ .+.+. .|+.+|..+.. T Consensus 11 sD~DVlIVGaGpaGl~~A~~Lar~Gi-~v~viEr~~~~ 47 (499) T 2qa2_A 11 SDASVIVVGAGPAGLMLAGELRLGGV-DVMVLEQLPQR 47 (499) T ss_dssp CCEEEEEECCSHHHHHHHHHHHHTTC-CEEEEESCSSC T ss_pred CCCCEEEECCCHHHHHHHHHHHHCCC-CEEEEECCCCC T ss_conf 89998999929899999999997899-99999289998 No 495 >1vl8_A Gluconate 5-dehydrogenase; TM0441, structural genomics, JCSG, protein structure initiative, PSI, joint center for structural genomics; HET: NAP; 2.07A {Thermotoga maritima MSB8} SCOP: c.2.1.2 Probab=25.62 E-value=31 Score=14.24 Aligned_cols=62 Identities=16% Similarity=0.220 Sum_probs=41.7 Q ss_pred CCCCEEEEECCCCC---HHHHHHHHCCCCEEEEECCCCCCHHH-HHHHHHHHHCCCCCCHHHHCCCC Q ss_conf 99987999758988---23467750235259984255430368-87875322001220000000143 Q gi|254780398|r 46 LDGITVIEIGAGPG---NLTQMLLTLGARKVIVIEKDQQFFPI-LKDISSQHPNRLEIIQDDALKVD 108 (284) Q Consensus 46 ~~~~~VlEIGpG~G---~LT~~Ll~~~~~~v~aiEiD~~~~~~-l~~~~~~~~~~~~ii~~Dal~~d 108 (284) .+++.+|=-|.+.| ++.+.+++.++ +|+.+.++..-.+. +++..+....++..+.+|+.+.+ T Consensus 19 L~gKvalITGas~GIG~aiA~~la~~Ga-~V~i~~r~~~~l~~~~~~l~~~~g~~~~~~~~Dv~~~~ 84 (267) T 1vl8_A 19 LRGRVALVTGGSRGLGFGIAQGLAEAGC-SVVVASRNLEEASEAAQKLTEKYGVETMAFRCDVSNYE 84 (267) T ss_dssp CTTCEEEEETTTSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHHHHHHHCCCEEEEECCTTCHH T ss_pred CCCCEEEEECCCCHHHHHHHHHHHHCCC-EEEEEECCHHHHHHHHHHHHHHHCCCEEEEEECCCCHH T ss_conf 8999899948987899999999998799-89999798899999999999970995799993489999 No 496 >2dgs_A DAZ-associated protein 1; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Probab=25.54 E-value=21 Score=15.35 Aligned_cols=21 Identities=19% Similarity=0.374 Sum_probs=17.4 Q ss_pred EEEECCCHHHHHHHHHHHHHH Q ss_conf 112023224678899999852 Q gi|254780398|r 120 RIIANLPYNIGTRLLFNWISA 140 (284) Q Consensus 120 ~vvgNLPYnIss~Il~~ll~~ 140 (284) ..|||||+.++-.-|..++.. T Consensus 13 lfV~nLp~~~te~~L~~~F~~ 33 (99) T 2dgs_A 13 IFVGGIPHNCGETELREYFKK 33 (99) T ss_dssp EEEESCCSSCCHHHHHHHHSS T ss_pred EEEECCCCCCCHHHHHHHHHH T ss_conf 999699997999999999987 No 497 >2dis_A Unnamed protein product; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1 Probab=25.38 E-value=26 Score=14.68 Aligned_cols=22 Identities=14% Similarity=0.111 Sum_probs=18.0 Q ss_pred EEEECCCHHHHHHHHHHHHHHH Q ss_conf 1120232246788999998520 Q gi|254780398|r 120 RIIANLPYNIGTRLLFNWISAD 141 (284) Q Consensus 120 ~vvgNLPYnIss~Il~~ll~~~ 141 (284) ..|||||++++-.-|..++... T Consensus 11 LfV~nLp~~~te~~l~~~F~~~ 32 (109) T 2dis_A 11 LFIGGIPKMKKREEILEEIAKV 32 (109) T ss_dssp EEEECCCTTSCHHHHHHHHHHH T ss_pred EEEECCCCCCCHHHHHHHHHHH T ss_conf 9997989868899999999972 No 498 >3kzv_A Uncharacterized oxidoreductase YIR035C; cytoplasmic protein, unknown function, structural genomics, PSI, MCSG; 2.00A {Saccharomyces cerevisiae} Probab=25.17 E-value=31 Score=14.19 Aligned_cols=58 Identities=17% Similarity=0.327 Sum_probs=33.5 Q ss_pred CCEEEEECCCCC---HHHHHHHHCCCC-EEEEECCCCCCHHHHHHHHHHHHCCCCCCHHHHCCCC Q ss_conf 987999758988---234677502352-5998425543036887875322001220000000143 Q gi|254780398|r 48 GITVIEIGAGPG---NLTQMLLTLGAR-KVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVD 108 (284) Q Consensus 48 ~~~VlEIGpG~G---~LT~~Ll~~~~~-~v~aiEiD~~~~~~l~~~~~~~~~~~~ii~~Dal~~d 108 (284) |+.+|=-|.+.| ++.+.|++.+++ -++.+.+++. .+++......+++..+.+|..+.+ T Consensus 2 GKv~lITGas~GIG~aia~~la~~Ga~v~v~~~~r~~~---~l~~l~~~~~~~~~~~~~Dvt~~~ 63 (254) T 3kzv_A 2 GKVILVTGVSRGIGKSIVDVLFSLDKDTVVYGVARSEA---PLKKLKEKYGDRFFYVVGDITEDS 63 (254) T ss_dssp CCEEEECSTTSHHHHHHHHHHHHHCSSCEEEEEESCHH---HHHHHHHHHGGGEEEEESCTTSHH T ss_pred CCEEEEECCCCHHHHHHHHHHHHCCCCEEEEECCCCHH---HHHHHHHHCCCCEEEEECCCCCHH T ss_conf 99899947775999999999997799889997269999---999999970994799981289999 No 499 >3jsk_A Cypbp37 protein; octameric thiazole synthase, biosynthetic protein; HET: AHZ; 2.70A {Neurospora crassa} Probab=24.96 E-value=16 Score=16.08 Aligned_cols=53 Identities=15% Similarity=0.255 Sum_probs=0.0 Q ss_pred CCCHHHHHHHHHHCCCCCCCEEEEECCCCCHHHHH--HHHCCCC-EEEEECCCCCC Q ss_conf 23989999999971989998799975898823467--7502352-59984255430 Q gi|254780398|r 30 LLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQM--LLTLGAR-KVIVIEKDQQF 82 (284) Q Consensus 30 L~d~~i~~~iv~~~~~~~~~~VlEIGpG~G~LT~~--Ll~~~~~-~v~aiEiD~~~ 82 (284) .+.+.+..+-........+..|+=||.|+..|+-+ |++..+. +|+.+|.+..+ T Consensus 61 ~i~~~~~~~~~~~~~~~~~~dv~vvg~g~~g~~~a~~~~~~~~g~~v~~~e~~~~~ 116 (344) T 3jsk_A 61 TVSRAMTRRYFADLDAHAETDIVIVGAGSCGLSAAYVLSTLRPDLRITIVEAGVAP 116 (344) T ss_dssp HHHHHHHHHHHHHHHHHHBCSEEEECCSHHHHHHHHHHHHHCTTSCEEEEESSSSC T ss_pred HHHHHHHHCCCCCCCCCCCCCEEEECCCHHHHHHHHHHHHHCCCCEEEEEECCCCC T ss_conf 97999854412434301568989989778999999999974899869999488777 No 500 >3iwa_A FAD-dependent pyridine nucleotide-disulphide oxidoreductase; structural genomics, PSI-2, protein structure initiative; 2.30A {Desulfovibrio vulgaris DP4} Probab=24.96 E-value=32 Score=14.17 Aligned_cols=34 Identities=21% Similarity=0.217 Sum_probs=0.0 Q ss_pred CEEEEECCCCCHHH--HHHHHCCCC-EEEEECCCCCC Q ss_conf 87999758988234--677502352-59984255430 Q gi|254780398|r 49 ITVIEIGAGPGNLT--QMLLTLGAR-KVIVIEKDQQF 82 (284) Q Consensus 49 ~~VlEIGpG~G~LT--~~Ll~~~~~-~v~aiEiD~~~ 82 (284) ..|+=||.|+|.+| ..|.+.++. +|+.||.++.+ T Consensus 4 kkVvIIGgG~AGl~aA~~l~~~g~~~~Vtlie~~~~~ 40 (472) T 3iwa_A 4 KHVVVIGAVALGPKAACRFKRLDPEAHVTMIDQASRI 40 (472) T ss_dssp CEEEEECCSSHHHHHHHHHHHHCTTSEEEEECCC--- T ss_pred CCEEEECCCHHHHHHHHHHHCCCCCCEEEEEECCCCC T ss_conf 9899989889999999999717989819999389976 Done!