RPS-BLAST 2.2.22 [Sep-27-2009]
Database: CddB
21,608 sequences; 5,994,473 total letters
Searching..................................................done
Query= gi|254780398|ref|YP_003064811.1| dimethyladenosine transferase
[Candidatus Liberibacter asiaticus str. psy62]
(284 letters)
>gnl|CDD|178953 PRK00274, ksgA, 16S ribosomal RNA methyltransferase KsgA/Dim1
family protein; Reviewed.
Length = 272
Score = 330 bits (848), Expect = 3e-91
Identities = 113/279 (40%), Positives = 153/279 (54%), Gaps = 17/279 (6%)
Query: 9 SLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTL 68
+ +L Y KK +GQNFL+D NIL KI +++G G V+EIG G G LT+ LL
Sbjct: 4 RTRELLERYGHRAKKSLGQNFLIDENILDKIVDAAGPQPGDNVLEIGPGLGALTEPLLER 63
Query: 69 GARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYN 128
A KV +E D+ PIL + + + L II+ DALKVD + P++++ANLPYN
Sbjct: 64 AA-KVTAVEIDRDLAPILAE--TFAEDNLTIIEGDALKVDLSEL----QPLKVVANLPYN 116
Query: 129 IGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMF 188
I T LLF+ + + ++ QKEV ERI A+ S YGRLSVL + +F
Sbjct: 117 ITTPLLFHLLEE---RDPIRDMVVMVQKEVAERIVAKPGSKAYGRLSVLVQYYCDVEKVF 173
Query: 189 DISPHVFFPSPKVTSTVIHFIPHLNPI--PCCLESLKKITQEAFGKRRKTLRQSLKRLGG 246
D+ P F P PKV S V+ +P P E ++ + AF +RRKTLR +LK L G
Sbjct: 174 DVPPSAFVPPPKVDSAVVRLVPRKEPPVPVKDEELFFRVVKAAFAQRRKTLRNNLKNLFG 233
Query: 247 -----ENLLHQAGIETNLRAENLSIEDFCRITNILTDNQ 280
E L AGI+ N RAE LS+E+F R+ N L
Sbjct: 234 SKEKLEEALEAAGIDPNRRAETLSVEEFVRLANALAALL 272
>gnl|CDD|162023 TIGR00755, ksgA, dimethyladenosine transferase. Alternate name:
S-adenosylmethionine--6-N',N'-adenosyl (rRNA)
dimethyltransferase.
Length = 253
Score = 237 bits (608), Expect = 2e-63
Identities = 106/260 (40%), Positives = 154/260 (59%), Gaps = 13/260 (5%)
Query: 21 PKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQ 80
P+K +GQNFL+D ++++KI E++ L+G V+EIG G G LT+ LL KV IE D
Sbjct: 3 PRKSLGQNFLIDESVIQKIVEAANVLEGDVVLEIGPGLGALTEPLLKRAK-KVTAIEIDP 61
Query: 81 QFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWISA 140
+ IL+ + S + RLE+I+ DALKVD F +++++NLPYNI + L+F +
Sbjct: 62 RLAEILRKLLSLY-ERLEVIEGDALKVDLPDFPKQ---LKVVSNLPYNISSPLIFKLLE- 116
Query: 141 DTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFPSPK 200
P + L+ QKEV ER+TA+ S YGRLSVL + ++F + P F+P PK
Sbjct: 117 ---KPKFRLAVLMVQKEVAERLTAKPGSKDYGRLSVLVQYFANVEIVFKVPPSAFYPPPK 173
Query: 201 VTSTVIHFIPHLNPIPCCLESLKKITQEAFGKRRKTLRQSLKRL----GGENLLHQAGIE 256
V S V+ IP + +K+ + AF +RRKTLR +LK+L E +L Q G++
Sbjct: 174 VDSAVVRLIPREQFPVKDIALFEKLLKAAFSQRRKTLRNNLKQLLKASKLEEVLEQLGLD 233
Query: 257 TNLRAENLSIEDFCRITNIL 276
RAE LS EDF R+ N+L
Sbjct: 234 PTARAEQLSPEDFLRLANLL 253
>gnl|CDD|184890 PRK14896, ksgA, 16S ribosomal RNA methyltransferase KsgA/Dim1
family protein; Provisional.
Length = 258
Score = 186 bits (475), Expect = 5e-48
Identities = 86/268 (32%), Positives = 126/268 (47%), Gaps = 22/268 (8%)
Query: 21 PKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQ 80
K +GQ+FL+D ++ +I E + DG V+EIG G G LT L A+KV IE D
Sbjct: 3 MNKKLGQHFLIDDRVVDRIVEYAEDTDGDPVLEIGPGKGALTDELAKR-AKKVYAIELDP 61
Query: 81 QFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWISA 140
+ L+D N +EII+ DALKVD +F N +++NLPY I + + F +
Sbjct: 62 RLAEFLRDDEIAAGN-VEIIEGDALKVDLPEF-NK-----VVSNLPYQISSPITFKLLKH 114
Query: 141 DTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFPSPK 200
+E L++QKE ER+ A+ + YGRLSV+ + ++ + P F P PK
Sbjct: 115 G-----FEPAVLMYQKEFAERMVAKPGTKEYGRLSVMVQYYADVEIVEKVPPGAFSPKPK 169
Query: 201 VTSTVIHFIPHLNPIPCCLESL-KKITQEAFGKRRKTLRQSLKRLGGE-------NLLHQ 252
V S V+ P E + F RRKTLR +LK ++
Sbjct: 170 VDSAVVRLTPREPKYEVYDEDFFDDFVKALFQHRRKTLRNALKNSAHISGKEDIKAVVEA 229
Query: 253 AGIET-NLRAENLSIEDFCRITNILTDN 279
E N R LS E+ + N+L +
Sbjct: 230 LPEELLNKRVFQLSPEEIAELANLLYEV 257
>gnl|CDD|128898 smart00650, rADc, Ribosomal RNA adenine dimethylases.
Length = 169
Score = 175 bits (445), Expect = 2e-44
Identities = 65/177 (36%), Positives = 88/177 (49%), Gaps = 9/177 (5%)
Query: 35 ILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQHP 94
++ KI ++ G TV+EIG G G LT+ LL AR V IE D + P L++ +
Sbjct: 1 VIDKIVRAANLRPGDTVLEIGPGKGALTEELLERAAR-VTAIEIDPRLAPRLREKFAAAD 59
Query: 95 NRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWISADTWPPFWESLTLLF 154
N L +I DALK D K P +++ NLPYNI T +LF + L+
Sbjct: 60 N-LTVIHGDALKFDLPKL----QPYKVVGNLPYNISTPILFKLLEEPPAF---RDAVLMV 111
Query: 155 QKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFPSPKVTSTVIHFIPH 211
QKEV R+ A+ S YGRLSVL ++F + P F P PKV S V+
Sbjct: 112 QKEVARRLAAKPGSKDYGRLSVLLQPYFDVKILFKVPPEAFRPPPKVDSAVVRLERR 168
>gnl|CDD|185564 PTZ00338, PTZ00338, dimethyladenosine transferase-like protein;
Provisional.
Length = 294
Score = 133 bits (337), Expect = 5e-32
Identities = 80/231 (34%), Positives = 118/231 (51%), Gaps = 12/231 (5%)
Query: 15 SHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVI 74
S ++ K GQ+ L + +L KI E + TV+EIG G GNLT+ LL L A+KVI
Sbjct: 4 SKSGMVFNKKFGQHILKNPLVLDKIVEKAAIKPTDTVLEIGPGTGNLTEKLLQL-AKKVI 62
Query: 75 VIEKDQQFFPILKD--ISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTR 132
IE D + LK +S ++LE+I+ DALK +F +F++ +AN+PY I +
Sbjct: 63 AIEIDPRMVAELKKRFQNSPLASKLEVIEGDALKTEF-PYFDVC-----VANVPYQISSP 116
Query: 133 LLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISP 192
L+F ++ P + L+FQKE R+ AQ Y RLSV T + T + +S
Sbjct: 117 LVFKLLAHR---PLFRCAVLMFQKEFALRLLAQPGDELYCRLSVNTQLLCRVTHLMKVSK 173
Query: 193 HVFFPSPKVTSTVIHFIPHLNPIPCCLESLKKITQEAFGKRRKTLRQSLKR 243
+ F P PKV S+V+ P P E + + F ++ KTL K
Sbjct: 174 NSFNPPPKVESSVVRIEPKNPPPDVDFEEWDGLLRICFSRKNKTLSAIFKT 224
>gnl|CDD|149354 pfam08242, Methyltransf_12, Methyltransferase domain. Members of
this family are SAM dependent methyltransferases.
Length = 98
Score = 33.5 bits (77), Expect = 0.068
Identities = 13/66 (19%), Positives = 24/66 (36%), Gaps = 5/66 (7%)
Query: 52 IEIGAGPGNLTQMLLTLGAR-KVIVIEKDQQFFPI----LKDISSQHPNRLEIIQDDALK 106
++IG G G L + LL + ++ L + R+ + DA+
Sbjct: 1 LDIGCGTGTLLRALLEALPGLEYTGVDISPAALEAAAERLAALGLLDAVRVRLDVLDAID 60
Query: 107 VDFEKF 112
+D F
Sbjct: 61 LDPGSF 66
>gnl|CDD|182119 PRK09861, PRK09861, cytoplasmic membrane lipoprotein-28;
Provisional.
Length = 272
Score = 32.7 bits (74), Expect = 0.11
Identities = 26/102 (25%), Positives = 49/102 (48%), Gaps = 13/102 (12%)
Query: 1 MTMNNKSHSLKTILSHYKIIPKKYMGQNFLLDL-NILKKIAESSGSLDGITVIEIGAGPG 59
+ +N++H YK++ +G F+ + KKI + +G T + I P
Sbjct: 93 LEQDNQAHG-------YKLVA---VGNTFVFPMAGYSKKIKTVAQIKEGAT-VAIPNDPT 141
Query: 60 NLTQMLLTLGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQ 101
NL + LL L K+I +++ + P DI+ +P L+I++
Sbjct: 142 NLGRALLLLQKEKLITLKEGKGLLPTALDITD-NPRHLQIME 182
>gnl|CDD|180257 PRK05785, PRK05785, hypothetical protein; Provisional.
Length = 226
Score = 32.4 bits (74), Expect = 0.15
Identities = 19/103 (18%), Positives = 36/103 (34%), Gaps = 22/103 (21%)
Query: 17 YKIIPKKYMGQNFLLDLNILKKIAESSGSL------DGITVIEIGAGPGNLTQMLLTLGA 70
Y IPK Y N + N + V+++ AG G L+
Sbjct: 15 YNKIPKAYDRANRFISFNQDVRWRAELVKTILKYCGRPKKVLDVAAGKGELSY------- 67
Query: 71 RKVIVIEKDQQFFPILKDISSQHPN--RLEIIQDDALKVDFEK 111
+K +++ + D + N ++ ++ DD + FE
Sbjct: 68 ----HFKKVFKYYVVALDYA---ENMLKMNLVADDKVVGSFEA 103
>gnl|CDD|161879 TIGR00438, rrmJ, cell division protein FtsJ.
Length = 188
Score = 31.7 bits (72), Expect = 0.21
Identities = 13/34 (38%), Positives = 19/34 (55%)
Query: 48 GITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQ 81
G TV+++GA PG +Q+ + K VI D Q
Sbjct: 33 GDTVLDLGAAPGGWSQVAVEQVGGKGRVIAVDLQ 66
>gnl|CDD|180885 PRK07208, PRK07208, hypothetical protein; Provisional.
Length = 479
Score = 29.9 bits (68), Expect = 0.69
Identities = 16/35 (45%), Positives = 17/35 (48%), Gaps = 4/35 (11%)
Query: 50 TVIEIGAGPGNLTQ--MLLTLGARKVIVIEKDQQF 82
VI IGAGP LT LL G V V+E D
Sbjct: 7 VVI-IGAGPAGLTAAYELLKRG-YPVTVLEADPVV 39
>gnl|CDD|149353 pfam08241, Methyltransf_11, Methyltransferase domain. Members of
this family are SAM dependent methyltransferases.
Length = 95
Score = 30.0 bits (68), Expect = 0.73
Identities = 12/59 (20%), Positives = 26/59 (44%), Gaps = 2/59 (3%)
Query: 52 IEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFE 110
+++G G G LT+ L L +V ++ + + + + + L + DA + F
Sbjct: 1 LDVGCGTGLLTEALARLPGAQVTGVDLSPEMLALARKRA--QEDGLTFVVGDAEDLPFP 57
>gnl|CDD|180419 PRK06134, PRK06134, putative FAD-binding dehydrogenase; Reviewed.
Length = 581
Score = 29.7 bits (67), Expect = 0.78
Identities = 14/34 (41%), Positives = 19/34 (55%), Gaps = 3/34 (8%)
Query: 51 VIEIGAGPGNLTQMLLT--LGARKVIVIEKDQQF 82
V+ IG+G L+ + G KVIV+EKD F
Sbjct: 15 VLVIGSGAAGLSAAVTAAWHG-LKVIVVEKDPVF 47
>gnl|CDD|162674 TIGR02050, gshA_cyan_rel, uncharacterized enzyme. This family
represents a division of a larger family, the other
branch of which is predicted to act as
glutamate--cysteine ligase (the first of two enzymes in
glutathione biosynthesis) in the cyanobacteria. Species
containing this protein, however, are generally not
believe to make glutathione, and the function is
unknown.
Length = 287
Score = 29.6 bits (67), Expect = 0.99
Identities = 16/63 (25%), Positives = 28/63 (44%), Gaps = 7/63 (11%)
Query: 154 FQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFPSPKVTSTVIH----FI 209
F + + + P Y RL G+ + ++F + HV PSP V++ ++
Sbjct: 90 FARWRRQEVADN---PRYQRLLERYGYVARQQLVFGLHVHVGVPSPDDAVAVLNRLLPWL 146
Query: 210 PHL 212
PHL
Sbjct: 147 PHL 149
>gnl|CDD|183785 PRK12842, PRK12842, putative succinate dehydrogenase; Reviewed.
Length = 574
Score = 29.3 bits (66), Expect = 1.3
Identities = 15/47 (31%), Positives = 23/47 (48%), Gaps = 7/47 (14%)
Query: 40 AESSGSLDGITVIEIGAGPGNLTQMLLTLGARK----VIVIEKDQQF 82
E + V+ IG+G G L+ + ARK V+V+EK+ F
Sbjct: 1 EECMTNELTCDVLVIGSGAGGLSAAIT---ARKLGLDVVVLEKEPVF 44
>gnl|CDD|182065 PRK09764, PRK09764, DNA-binding transcriptional repressor MngR;
Provisional.
Length = 240
Score = 29.0 bits (65), Expect = 1.3
Identities = 10/24 (41%), Positives = 16/24 (66%)
Query: 227 QEAFGKRRKTLRQSLKRLGGENLL 250
Q FG R T+RQ+L++L + +L
Sbjct: 36 QTEFGVSRVTVRQALRQLVEQQIL 59
>gnl|CDD|178197 PLN02585, PLN02585, magnesium protoporphyrin IX methyltransferase.
Length = 315
Score = 29.1 bits (65), Expect = 1.3
Identities = 16/37 (43%), Positives = 21/37 (56%), Gaps = 1/37 (2%)
Query: 34 NILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGA 70
+L +AE GSL G+TV + G G G+L L GA
Sbjct: 132 KVLLWLAED-GSLAGVTVCDAGCGTGSLAIPLALEGA 167
>gnl|CDD|177715 PLN00096, PLN00096, isocitrate dehydrogenase (NADP+); Provisional.
Length = 393
Score = 28.8 bits (64), Expect = 1.5
Identities = 10/42 (23%), Positives = 19/42 (45%), Gaps = 5/42 (11%)
Query: 125 LPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQK 166
+PY + + +F W PFWE + +F +E + +
Sbjct: 195 VPYVVTKKTVFKWQE-----PFWEIMKKVFDEEFKSKFVDKG 231
>gnl|CDD|181382 PRK08317, PRK08317, hypothetical protein; Provisional.
Length = 241
Score = 28.7 bits (65), Expect = 1.7
Identities = 17/71 (23%), Positives = 34/71 (47%), Gaps = 10/71 (14%)
Query: 47 DGITVIEIGAGPGNLTQMLLTLGAR------KVIVIEKDQQFFPILKDISSQHPNRLEII 100
G V+++G GPGN + L AR +V+ I++ + + K+ ++ +E +
Sbjct: 19 PGDRVLDVGCGPGNDAREL----ARRVGPEGRVVGIDRSEAMLALAKERAAGLGPNVEFV 74
Query: 101 QDDALKVDFEK 111
+ DA + F
Sbjct: 75 RGDADGLPFPD 85
>gnl|CDD|181392 PRK08332, PRK08332, ribonucleotide-diphosphate reductase subunit
alpha; Validated.
Length = 1740
Score = 28.6 bits (63), Expect = 1.7
Identities = 17/44 (38%), Positives = 21/44 (47%), Gaps = 10/44 (22%)
Query: 108 DFEKFFNISSPIRIIANLPYNIGTRLLFNW-ISADTWPPFWESL 150
D EKF + NIGT +L N+ IS W FWE+L
Sbjct: 814 DIEKFIHAKEK---------NIGTNVLSNFNISVGIWEDFWEAL 848
>gnl|CDD|132479 TIGR03438, TIGR03438, probable methyltransferase. This model
represents a distinct set of uncharacterized proteins
found in the bacteria. Analysis by PSI-BLAST shows
remote sequence homology to methyltransferases.
Length = 301
Score = 28.3 bits (64), Expect = 2.6
Identities = 15/55 (27%), Positives = 28/55 (50%), Gaps = 11/55 (20%)
Query: 39 IAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQH 93
IA ++G G ++E+G+G T++LL + + ++ PI DIS+
Sbjct: 57 IAAATG--AGCELVELGSGSSRKTRLLLD-------ALRQPARYVPI--DISADA 100
>gnl|CDD|131680 TIGR02632, RhaD_aldol-ADH, rhamnulose-1-phosphate aldolase/alcohol
dehydrogenase.
Length = 676
Score = 27.9 bits (62), Expect = 2.9
Identities = 17/60 (28%), Positives = 28/60 (46%), Gaps = 13/60 (21%)
Query: 187 MFDISPHVFF-PSPKVTS--TVIH-FIP-----HLNPIP----CCLESLKKITQEAFGKR 233
M PH F + + S T +H F+P H++P C E+ +++T+E FG
Sbjct: 84 MVAYLPHCLFNLNGRAPSIDTPLHAFVPFKHVDHMHPDAIIALACAENGRELTEEIFGDE 143
>gnl|CDD|184509 PRK14103, PRK14103, trans-aconitate 2-methyltransferase;
Provisional.
Length = 255
Score = 28.1 bits (63), Expect = 3.0
Identities = 9/15 (60%), Positives = 13/15 (86%)
Query: 51 VIEIGAGPGNLTQML 65
V+++G GPGNLT+ L
Sbjct: 33 VVDLGCGPGNLTRYL 47
>gnl|CDD|183378 PRK11913, phhA, phenylalanine 4-monooxygenase; Reviewed.
Length = 275
Score = 27.9 bits (63), Expect = 3.0
Identities = 8/24 (33%), Positives = 9/24 (37%), Gaps = 1/24 (4%)
Query: 173 RLSVLTGWRTKATMMFDISPHVFF 196
L TGW+ I VFF
Sbjct: 77 VLQAATGWQVVPVPGL-IPFDVFF 99
>gnl|CDD|178790 PRK00009, PRK00009, phosphoenolpyruvate carboxylase; Reviewed.
Length = 911
Score = 27.8 bits (63), Expect = 3.1
Identities = 11/25 (44%), Positives = 16/25 (64%), Gaps = 2/25 (8%)
Query: 108 DFEKFFNISSPIRIIANLPYNIGTR 132
DF +F ++PI+ I L NIG+R
Sbjct: 704 DFVDYFRAATPIQEIGKL--NIGSR 726
>gnl|CDD|132615 TIGR03576, pyridox_MJ0158, pyridoxal phosphate enzyme, MJ0158
family. Members of this archaeal protein family are
pyridoxal phosphate enzymes of unknown function.
Sequence similarity to SelA, a bacterial enzyme of
selenocysteine biosynthesis, has led to some members
being misannotated as functionally equivalent, but
selenocysteine is made on tRNA in Archaea by a two-step
process that does not involve a SelA homolog.
Length = 346
Score = 27.8 bits (62), Expect = 3.4
Identities = 17/79 (21%), Positives = 29/79 (36%), Gaps = 5/79 (6%)
Query: 200 KVTSTVIHFIPHLNPIPCCLESLKKITQEAFGKRRKTLRQSLKRLGGENLLHQAGIETNL 259
V+H++P P S K E F LK++ G +L+ G + +
Sbjct: 93 PPGRKVVHYLPEKPAHPSIPRSCKLAGAEYF---ESDELSELKKIDGTSLVVITG--STM 147
Query: 260 RAENLSIEDFCRITNILTD 278
+ +S ED R+
Sbjct: 148 DLKVVSEEDLKRVIKQAKS 166
>gnl|CDD|183849 PRK13026, PRK13026, acyl-CoA dehydrogenase; Reviewed.
Length = 774
Score = 27.6 bits (62), Expect = 3.5
Identities = 20/46 (43%), Positives = 26/46 (56%), Gaps = 4/46 (8%)
Query: 19 IIPKKYMGQNFLLDLN--ILKKIAESSGSLDGITVIEIGA-GPGNL 61
IIPK+Y G+ F N I+ KIA S S +TV+ + GPG L
Sbjct: 126 IIPKEYGGKGFSAYANSTIVSKIATRSVSA-AVTVMVPNSLGPGEL 170
>gnl|CDD|162502 TIGR01717, AMP-nucleosdse, AMP nucleosidase. This model represents
the AMP nucleosidase from proteobacteria but also
including a sequence from Corynebacterium, a
gram-positive organism. The species from E. coli has
been most well studied.
Length = 477
Score = 27.5 bits (61), Expect = 3.8
Identities = 9/14 (64%), Positives = 11/14 (78%)
Query: 47 DGITVIEIGAGPGN 60
DGIT++ IG GP N
Sbjct: 264 DGITLVNIGVGPSN 277
>gnl|CDD|161861 TIGR00406, prmA, ribosomal protein L11 methyltransferase.
Ribosomal protein L11 methyltransferase is an
S-adenosyl-L-methionine-dependent methyltransferase
required for the modification of ribosomal protein L11.
This protein is found in bacteria and (with a probable
transit peptide) in Arabidopsis.
Length = 288
Score = 27.5 bits (61), Expect = 3.9
Identities = 15/36 (41%), Positives = 20/36 (55%)
Query: 46 LDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQ 81
L VI++G G G L+ L LGA KV+ I+ D
Sbjct: 158 LKDKNVIDVGCGSGILSIAALKLGAAKVVGIDIDPL 193
>gnl|CDD|178819 PRK00045, hemA, glutamyl-tRNA reductase; Reviewed.
Length = 423
Score = 27.5 bits (62), Expect = 4.0
Identities = 15/35 (42%), Positives = 18/35 (51%), Gaps = 2/35 (5%)
Query: 44 GSLDGITVIEIGAGP-GNLT-QMLLTLGARKVIVI 76
G L G V+ IGAG G L + L G RK+ V
Sbjct: 178 GDLSGKKVLVIGAGEMGELVAKHLAEKGVRKITVA 212
>gnl|CDD|180585 PRK06482, PRK06482, short chain dehydrogenase; Provisional.
Length = 276
Score = 27.4 bits (61), Expect = 4.1
Identities = 16/55 (29%), Positives = 27/55 (49%), Gaps = 5/55 (9%)
Query: 49 ITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDD 103
IT G G G +T+ LL G R + + L D+ +++ +RL ++Q D
Sbjct: 7 ITGASSGFGRG-MTERLLARGDRVAATVRRPDA----LDDLKARYGDRLWVLQLD 56
>gnl|CDD|162363 TIGR01444, fkbM_fam, methyltransferase, FkbM family. Members of
this family are characterized by two well-conserved
short regions separated by a variable in both sequence
and length. The first of the two regions is found in a
large number of proteins outside this subfamily, a
number of which have been characterized as
methyltransferases. One member of the present family,
FkbM, was shown to be required for a specific
methylation in the biosynthesis of the
immunosuppressant FK506 in Streptomyces strain MA6548.
Length = 143
Score = 27.3 bits (61), Expect = 4.4
Identities = 12/39 (30%), Positives = 19/39 (48%), Gaps = 1/39 (2%)
Query: 50 TVIEIGAGPGNLTQMLLTLGAR-KVIVIEKDQQFFPILK 87
VI++GA G+ + GA +VI E + IL+
Sbjct: 1 VVIDVGANIGDTSLYFARKGAEGRVIAFEPLPDAYEILE 39
>gnl|CDD|162377 TIGR01469, cobA_cysG_Cterm, uroporphyrin-III C-methyltransferase.
This model represents enzymes, or enzyme domains, with
uroporphyrin-III C-methyltransferase activity. This
enzyme catalyzes the first step committed to the
biosynthesis of either siroheme or cobalamin (vitamin
B12) rather than protoheme (heme). Cobalamin contains
cobalt while siroheme contains iron. Siroheme is a
cofactor for nitrite and sulfite reductases and
therefore plays a role in cysteine biosynthesis; many
members of this family are CysG, siroheme synthase,
with an additional N-terminal domain and with
additional oxidation and iron insertion activities.
Length = 236
Score = 27.2 bits (61), Expect = 5.3
Identities = 11/24 (45%), Positives = 16/24 (66%), Gaps = 2/24 (8%)
Query: 51 VIEIGAGPGNLTQMLLTLGARKVI 74
V +GAGPG+ LLTL A +++
Sbjct: 2 VYLVGAGPGD--PELLTLKALRLL 23
>gnl|CDD|180516 PRK06292, PRK06292, dihydrolipoamide dehydrogenase; Validated.
Length = 460
Score = 27.1 bits (61), Expect = 5.5
Identities = 14/36 (38%), Positives = 15/36 (41%), Gaps = 13/36 (36%)
Query: 51 VIEIGAGPGNLTQMLLTLGAR-------KVIVIEKD 79
VI IGAGP AR KV +IEK
Sbjct: 6 VIVIGAGPAGYV------AARRAAKLGKKVALIEKG 35
>gnl|CDD|129230 TIGR00124, cit_ly_ligase, [citrate (pro-3S)-lyase] ligase. ATP is
cleaved to AMP and pyrophosphate during the reaction.
The carboxyl end is homologous to a number of
cytidyltransferases that also release pyrophosphate.
Length = 332
Score = 27.1 bits (60), Expect = 5.5
Identities = 11/42 (26%), Positives = 21/42 (50%)
Query: 241 LKRLGGENLLHQAGIETNLRAENLSIEDFCRITNILTDNQDI 282
+R+ EN L GI+ L LS++ I + ++++I
Sbjct: 1 FRRVWLENKLKACGIKNFLHQNELSLDAPLEIFIAVYEDEEI 42
>gnl|CDD|181358 PRK08292, PRK08292, AMP nucleosidase; Provisional.
Length = 489
Score = 26.8 bits (60), Expect = 6.7
Identities = 8/14 (57%), Positives = 10/14 (71%)
Query: 47 DGITVIEIGAGPGN 60
GIT++ IG GP N
Sbjct: 276 QGITLVNIGVGPSN 289
>gnl|CDD|163073 TIGR02919, TIGR02919, accessory Sec system glycosyltransferase
GtfB. Members of this protein family are found only in
Gram-positive bacteria of the Firmicutes lineage,
including several species of Staphylococcus,
Streptococcus, and Lactobacillus.
Length = 438
Score = 26.5 bits (59), Expect = 7.0
Identities = 11/36 (30%), Positives = 14/36 (38%), Gaps = 3/36 (8%)
Query: 113 FNISSPIRIIANLPYNIGTRLLFNWISADTWPPFWE 148
++ SP R G L FN + P FWE
Sbjct: 39 DDVLSPYRFFTGYEDTNGKPLYFNEV---PVPDFWE 71
>gnl|CDD|135660 PRK05927, PRK05927, hypothetical protein; Provisional.
Length = 350
Score = 26.8 bits (59), Expect = 7.1
Identities = 12/40 (30%), Positives = 22/40 (55%), Gaps = 4/40 (10%)
Query: 153 LFQKEVGERITAQKNSP----HYGRLSVLTGWRTKATMMF 188
+ + V + I+ +K P + +L+ G+R+ ATMMF
Sbjct: 168 ILSERVRKIISPKKMGPDGWIQFHKLAHRLGFRSTATMMF 207
>gnl|CDD|177808 PLN00415, PLN00415, 3-ketoacyl-CoA synthase.
Length = 466
Score = 26.6 bits (58), Expect = 7.2
Identities = 29/128 (22%), Positives = 54/128 (42%), Gaps = 17/128 (13%)
Query: 86 LKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLL-FNWISADTWP 144
L D S P D+ K+ E FFN++ ++ TR+L + + DT+
Sbjct: 62 LVDFSCHQPT-------DSCKISSETFFNMAKGAQLYTEETIQFMTRILNRSGLGDDTYS 114
Query: 145 PFWESLTLLFQKEVGERITAQKNSPH--YGRLSVL---TGWRTKATMMFDISPHVFFPSP 199
P +L A+ S +G L+ L TG + +F ++ +F P+P
Sbjct: 115 P----RCMLTSPPTPSMYEARHESELVIFGALNSLFKKTGIEPREVGIFIVNCSLFNPNP 170
Query: 200 KVTSTVIH 207
++S +++
Sbjct: 171 SLSSMIVN 178
>gnl|CDD|179319 PRK01683, PRK01683, trans-aconitate 2-methyltransferase;
Provisional.
Length = 258
Score = 26.8 bits (60), Expect = 7.3
Identities = 8/16 (50%), Positives = 14/16 (87%)
Query: 51 VIEIGAGPGNLTQMLL 66
V+++G GPGN T++L+
Sbjct: 35 VVDLGCGPGNSTELLV 50
>gnl|CDD|162639 TIGR01983, UbiG, ubiquinone biosynthesis O-methyltransferase.
This model represents an O-methyltransferase believed
to act at two points in the ubiquinone biosynthetic
pathway in bacteria (UbiG) and fungi (COQ3). A separate
methylase (MenG/UbiE) catalyzes the single
C-methylation step. The most commonly used names for
genes in this family do not indicate whether this gene
is an O-methyl, or C-methyl transferase.
Length = 224
Score = 26.5 bits (59), Expect = 7.7
Identities = 13/36 (36%), Positives = 21/36 (58%)
Query: 35 ILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGA 70
I I ++ L G+ V+++G G G L++ L LGA
Sbjct: 33 IRDTIRKNKKPLFGLRVLDVGCGGGLLSEPLARLGA 68
>gnl|CDD|162871 TIGR02469, CbiT, precorrin-6Y C5,15-methyltransferase
(decarboxylating), CbiT subunit. This model recognizes
the CbiT methylase which is responsible, in part (along
with CbiE), for methylating precorrin-6y (or
cobalt-precorrin-6y) at both the 5 and 15 positions as
well as the concomitant decarbozylation at C-12. In many
organisms, this protein is fused to the CbiE subunit.
The fused protein, when found in organisms catalyzing
the oxidative version of the cobalamin biosynthesis
pathway, is called CobL.
Length = 124
Score = 26.5 bits (59), Expect = 8.7
Identities = 13/60 (21%), Positives = 32/60 (53%), Gaps = 2/60 (3%)
Query: 47 DGITVIEIGAGPGNLT-QMLLTLGARKVIVIEKDQQFFPILKDISSQHP-NRLEIIQDDA 104
G + +IGAG G++T + + +V IE++ + +++ + + + + I++ DA
Sbjct: 19 PGDVLWDIGAGSGSITIEAARLVPNGRVYAIERNPEALRLIERNARRFGVSNIVIVEGDA 78
>gnl|CDD|162111 TIGR00924, yjdL_sub1_fam, amino acid/peptide transporter
(Peptide:H+ symporter), bacterial. The model describes
proton-dependent oligopeptide transporters in bacteria.
This model is restricted in its range in recognizing
bacterial proton-dependent oligopeptide transporters,
although they are found in yeast, plants and animals.
They function by proton symport in a 1:1 stoichiometry,
which is variable in different species. All of them are
predicted to contain 12 transmembrane domains, for which
limited experimental evidence exists.
Length = 475
Score = 26.3 bits (58), Expect = 8.9
Identities = 17/45 (37%), Positives = 25/45 (55%), Gaps = 5/45 (11%)
Query: 18 KIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLT 62
KI P++ MGQ +L + L A++ GSL G + GA P +T
Sbjct: 408 KIAPQRLMGQ--MLGMWFL---AQAMGSLLGGYLATFGAVPQGVT 447
>gnl|CDD|179264 PRK01254, PRK01254, hypothetical protein; Provisional.
Length = 707
Score = 26.2 bits (58), Expect = 9.5
Identities = 15/78 (19%), Positives = 34/78 (43%), Gaps = 30/78 (38%)
Query: 195 FFPSPKVTSTVIHFIPHLNPIPCCLESLKKITQEA-------FGKRRK------------ 235
F+PSP +T +++ NP LKK+ ++ ++R+
Sbjct: 595 FYPSPMANATTMYY-TGKNP-------LKKVKYKSEDVVVPKGDRQRRLHKALLRYHDPA 646
Query: 236 ---TLRQSLKRLGGENLL 250
+R++L+ +G ++L+
Sbjct: 647 NWPLIREALEAMGKKHLI 664
Database: CddB
Posted date: Feb 4, 2011 9:54 PM
Number of letters in database: 5,994,473
Number of sequences in database: 21,608
Lambda K H
0.322 0.138 0.409
Gapped
Lambda K H
0.267 0.0660 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 21608
Number of Hits to DB: 4,578,204
Number of extensions: 293116
Number of successful extensions: 729
Number of sequences better than 10.0: 1
Number of HSP's gapped: 703
Number of HSP's successfully gapped: 48
Length of query: 284
Length of database: 5,994,473
Length adjustment: 92
Effective length of query: 192
Effective length of database: 4,006,537
Effective search space: 769255104
Effective search space used: 769255104
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 57 (25.9 bits)