RPSBLAST alignment of GI: 254780398 and protein with PDBid: 1yub

 Score =  126 bits (317), Expect = 5e-30
 Identities = 49/259 (18%), Positives = 89/259 (34%), Gaps = 22/259 (8%)

Query: 21  PKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQ 80
                 QNFL    +L +I +     +  TV EIG G G+LT  L  +  ++V  IE D 
Sbjct: 3   KNIKYSQNFLTSEKVLNQIIKQLNLKETDTVYEIGTGKGHLTTKLAKIS-KQVTSIELDS 61

Query: 81  QFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWISA 140
             F +  +    +     +I  D L+  F          +I+ N+PY++ T+++   +  
Sbjct: 62  HLFNLSSEKLKLNTRV-TLIHQDILQFQFPNKQR----YKIVGNIPYHLSTQIIKKVVFE 116

Query: 141 DTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFPSPK 200
                 +  +   F K         +    +  L +L   +     +  +    F P PK
Sbjct: 117 SRASDIYLIVEEGFYK---------RTLDIHRTLGLLLHTQVSIQQLLKLPAECFHPKPK 167

Query: 201 VTSTVIHFIPHLNPIPCCLESL-KKITQEAFGKRRKTLRQSLKRLGGENLLHQAGIETNL 259
           V S +I    H   +P     L      +   +  + L    +       +  A +    
Sbjct: 168 VNSVLIKLTRHTTDVPDKYWKLYTYFVSKWVNREYRQLFTKNQF---HQAMKHAKVN--- 221

Query: 260 RAENLSIEDFCRITNILTD 278
               ++ E    I N    
Sbjct: 222 NLSTITYEQVLSIFNSYLL 240