RPSBLAST alignment of GI: 254780398 and protein with PDBid: 3fyd

>3fyd_A Probable dimethyladenosine transferase; rossman fold, rRNA methylase, ribosomal assembly, methyltransferase, RNA-binding; 1.75A {Methanocaldococcus jannaschii} PDB: 3fyc_A* Length = 263

 Score =  173 bits (440), Expect = 4e-44
 Identities = 76/267 (28%), Positives = 117/267 (43%), Gaps = 28/267 (10%)

Query: 27  QNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPIL 86
           Q FL+D N + K  ES+       V+EIG G G LT+ L    A+KV VIE D+   P  
Sbjct: 1   QCFLIDKNFVNKAVESANLTKDDVVLEIGLGKGILTEELAKN-AKKVYVIEIDKSLEPYA 59

Query: 87  KDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWISADTWPPF 146
             +   + N +EII  DALKVD  K        +++ANLPY I + + F           
Sbjct: 60  NKLKELYNN-IEIIWGDALKVDLNKLDFN----KVVANLPYQISSPITFKL-----IKRG 109

Query: 147 WESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFPSPKVTSTVI 206
           ++   L++Q E  +R+ A   +  YGRLSV    R    ++  + P  F+P PKV S ++
Sbjct: 110 FDLAVLMYQYEFAKRMVAAAGTKDYGRLSVAVQSRADVEIVAKVPPSAFYPKPKVYSAIV 169

Query: 207 HFIPHLNPIPCCLESL-KKITQEAFGKRRKTLRQSLKRLGGE----------------NL 249
              P+        E+      +  F  R K++R++L     E                N 
Sbjct: 170 KIKPNKGKYHIENENFFDDFLRAIFQHRNKSVRKALIDSSKELNYNKDEMKKILEDFLNT 229

Query: 250 LHQAGIETNLRAENLSIEDFCRITNIL 276
             +     N +   LS++D   ++N  
Sbjct: 230 NSEIKNLINEKVFKLSVKDIVNLSNEF 256