RPSBLAST alignment of GI: 254780398 and protein with PDBid: 3gru
>3gru_A Dimethyladenosine transferase; rossman fold, ribosomal assembly S-adenosyl-L-methionine, rRNA, methyltransferase, RNA-binding; HET: AMP; 1.60A {Methanocaldococcus jannaschii} PDB: 3grr_A* 3grv_A* 3gry_A* 3fyd_A 3fyc_A* Length = 295
Score = 199 bits (506), Expect = 7e-52
Identities = 80/275 (29%), Positives = 122/275 (44%), Gaps = 28/275 (10%)
Query: 19 IIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEK 78
PKK +GQ FL+D N + K ES+ V+EIG G G LT+ L A+KV VIE
Sbjct: 22 FKPKKKLGQCFLIDKNFVNKAVESANLTKDDVVLEIGLGKGILTEELAKN-AKKVYVIEI 80
Query: 79 DQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWI 138
D+ P + + N +EII DALKVD K +++ANLPY I + + F
Sbjct: 81 DKSLEPYANKLKELYNN-IEIIWGDALKVDLNKL----DFNKVVANLPYQISSPITFKL- 134
Query: 139 SADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFPS 198
++ L++Q E +R+ A + YGRLSV R ++ + P F+P
Sbjct: 135 ----IKRGFDLAVLMYQYEFAKRMVAAAGTKDYGRLSVAVQSRADVEIVAKVPPSAFYPK 190
Query: 199 PKVTSTVIHFIPHLNPIPCCLES-LKKITQEAFGKRRKTLRQSLKRLGGE---------- 247
PKV S ++ P+ E+ + F R K++R++L E
Sbjct: 191 PKVYSAIVKIKPNKGKYHIENENFFDDFLRAIFQHRNKSVRKALIDSSKELNYNKDEMKK 250
Query: 248 ------NLLHQAGIETNLRAENLSIEDFCRITNIL 276
N + N + LS++D ++N
Sbjct: 251 ILEDFLNTNSEIKNLINEKVFKLSVKDIVNLSNEF 285