BLASTP 2.2.22 [Sep-27-2009]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= gi|254780398|ref|YP_003064811.1| dimethyladenosine transferase
[Candidatus Liberibacter asiaticus str. psy62]
         (284 letters)

Database: las_proteome 
           1233 sequences; 328,796 total letters

Searching...................................................done



>gi|254780398|ref|YP_003064811.1| dimethyladenosine transferase [Candidatus Liberibacter asiaticus
           str. psy62]
          Length = 284

 Score =  584 bits (1506), Expect = e-169,   Method: Compositional matrix adjust.
 Identities = 284/284 (100%), Positives = 284/284 (100%)

Query: 1   MTMNNKSHSLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGN 60
           MTMNNKSHSLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGN
Sbjct: 1   MTMNNKSHSLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGN 60

Query: 61  LTQMLLTLGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIR 120
           LTQMLLTLGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIR
Sbjct: 61  LTQMLLTLGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIR 120

Query: 121 IIANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGW 180
           IIANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGW
Sbjct: 121 IIANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGW 180

Query: 181 RTKATMMFDISPHVFFPSPKVTSTVIHFIPHLNPIPCCLESLKKITQEAFGKRRKTLRQS 240
           RTKATMMFDISPHVFFPSPKVTSTVIHFIPHLNPIPCCLESLKKITQEAFGKRRKTLRQS
Sbjct: 181 RTKATMMFDISPHVFFPSPKVTSTVIHFIPHLNPIPCCLESLKKITQEAFGKRRKTLRQS 240

Query: 241 LKRLGGENLLHQAGIETNLRAENLSIEDFCRITNILTDNQDIAI 284
           LKRLGGENLLHQAGIETNLRAENLSIEDFCRITNILTDNQDIAI
Sbjct: 241 LKRLGGENLLHQAGIETNLRAENLSIEDFCRITNILTDNQDIAI 284


>gi|254780666|ref|YP_003065079.1| Fmu (Sun) domain protein [Candidatus Liberibacter asiaticus str.
           psy62]
          Length = 445

 Score = 29.6 bits (65), Expect = 0.054,   Method: Compositional matrix adjust.
 Identities = 17/71 (23%), Positives = 36/71 (50%)

Query: 44  GSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDD 103
           G+L+ ++V+++ A PG  T  L+  GA+   +    ++   +  ++   H    +II+ D
Sbjct: 238 GTLNNLSVLDLCAAPGGKTAQLIVSGAKVTALDVSKRRLEKLRCNLDRLHLYAEDIIEMD 297

Query: 104 ALKVDFEKFFN 114
           A     +K F+
Sbjct: 298 AFDYCPKKLFD 308


>gi|254780660|ref|YP_003065073.1| hypothetical protein CLIBASIA_02735 [Candidatus Liberibacter
           asiaticus str. psy62]
          Length = 244

 Score = 24.6 bits (52), Expect = 1.8,   Method: Compositional matrix adjust.
 Identities = 14/48 (29%), Positives = 26/48 (54%), Gaps = 4/48 (8%)

Query: 234 RKTLRQSLKRLGGENLLHQAGIETNLRAENLSIEDFCRITNILTDNQD 281
           ++ + +++K+ G ++L    G  TN+R E    E    I   LTDN++
Sbjct: 63  KENIERAIKKAGSDDL----GNYTNIRYEGYGPEGVAIIIEALTDNRN 106


>gi|254780700|ref|YP_003065113.1| serine protease DO-like protease [Candidatus Liberibacter asiaticus
           str. psy62]
          Length = 489

 Score = 24.6 bits (52), Expect = 2.0,   Method: Compositional matrix adjust.
 Identities = 12/29 (41%), Positives = 16/29 (55%)

Query: 9   SLKTILSHYKIIPKKYMGQNFLLDLNILK 37
           S   ILS    +P K +G + L DL +LK
Sbjct: 134 SFSVILSDDTELPAKLVGTDALFDLAVLK 162


>gi|255764486|ref|YP_003065119.2| ABC transporter, membrane spanning protein [Candidatus Liberibacter
           asiaticus str. psy62]
          Length = 493

 Score = 23.5 bits (49), Expect = 4.0,   Method: Compositional matrix adjust.
 Identities = 13/32 (40%), Positives = 20/32 (62%)

Query: 34  NILKKIAESSGSLDGITVIEIGAGPGNLTQML 65
           +IL KI +S  SLD  T  +I  G G+++ +L
Sbjct: 94  SILHKIVDSLSSLDPDTKFKIQKGDGDISDLL 125


>gi|254780889|ref|YP_003065302.1| inosine 5'-monophosphate dehydrogenase [Candidatus Liberibacter
           asiaticus str. psy62]
          Length = 493

 Score = 22.7 bits (47), Expect = 6.6,   Method: Compositional matrix adjust.
 Identities = 14/47 (29%), Positives = 24/47 (51%), Gaps = 4/47 (8%)

Query: 27  QNFLLDLNILKKIAESSGSLD----GITVIEIGAGPGNLTQMLLTLG 69
           +NF   L +   IA + G+L     G  +I++G GPG++    +  G
Sbjct: 270 KNFPSLLVMAGNIATAEGALALIDAGADIIKVGIGPGSICTTRVVTG 316


>gi|254781038|ref|YP_003065451.1| putative DNA-binding/iron metalloprotein/AP endonuclease
           [Candidatus Liberibacter asiaticus str. psy62]
          Length = 363

 Score = 22.3 bits (46), Expect = 8.7,   Method: Compositional matrix adjust.
 Identities = 13/56 (23%), Positives = 28/56 (50%)

Query: 30  LLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPI 85
           +LD+ I + +  ++  +  +  I + AGPG +  +++ L   K I     + F+ I
Sbjct: 62  VLDILIKQTLLRANMQISDMDSIAVTAGPGLMGGLIVGLMTAKAISYVSHKPFYAI 117


  Database: las_proteome
    Posted date:  Jun 5, 2011  6:30 PM
  Number of letters in database: 328,796
  Number of sequences in database:  1233
  
Lambda     K      H
   0.322    0.138    0.409 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 181,241
Number of Sequences: 1233
Number of extensions: 7278
Number of successful extensions: 19
Number of sequences better than 100.0: 11
Number of HSP's better than 100.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 5
Number of HSP's that attempted gapping in prelim test: 13
Number of HSP's gapped (non-prelim): 11
length of query: 284
length of database: 328,796
effective HSP length: 73
effective length of query: 211
effective length of database: 238,787
effective search space: 50384057
effective search space used: 50384057
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 38 (19.2 bits)