BLASTP 2.2.22 [Sep-27-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= gi|254780398|ref|YP_003064811.1| dimethyladenosine transferase [Candidatus Liberibacter asiaticus str. psy62] (284 letters) Database: las_proteome 1233 sequences; 328,796 total letters Searching...................................................done >gi|254780398|ref|YP_003064811.1| dimethyladenosine transferase [Candidatus Liberibacter asiaticus str. psy62] Length = 284 Score = 584 bits (1506), Expect = e-169, Method: Compositional matrix adjust. Identities = 284/284 (100%), Positives = 284/284 (100%) Query: 1 MTMNNKSHSLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGN 60 MTMNNKSHSLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGN Sbjct: 1 MTMNNKSHSLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGN 60 Query: 61 LTQMLLTLGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIR 120 LTQMLLTLGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIR Sbjct: 61 LTQMLLTLGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIR 120 Query: 121 IIANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGW 180 IIANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGW Sbjct: 121 IIANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGW 180 Query: 181 RTKATMMFDISPHVFFPSPKVTSTVIHFIPHLNPIPCCLESLKKITQEAFGKRRKTLRQS 240 RTKATMMFDISPHVFFPSPKVTSTVIHFIPHLNPIPCCLESLKKITQEAFGKRRKTLRQS Sbjct: 181 RTKATMMFDISPHVFFPSPKVTSTVIHFIPHLNPIPCCLESLKKITQEAFGKRRKTLRQS 240 Query: 241 LKRLGGENLLHQAGIETNLRAENLSIEDFCRITNILTDNQDIAI 284 LKRLGGENLLHQAGIETNLRAENLSIEDFCRITNILTDNQDIAI Sbjct: 241 LKRLGGENLLHQAGIETNLRAENLSIEDFCRITNILTDNQDIAI 284 >gi|254780666|ref|YP_003065079.1| Fmu (Sun) domain protein [Candidatus Liberibacter asiaticus str. psy62] Length = 445 Score = 29.6 bits (65), Expect = 0.054, Method: Compositional matrix adjust. Identities = 17/71 (23%), Positives = 36/71 (50%) Query: 44 GSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDD 103 G+L+ ++V+++ A PG T L+ GA+ + ++ + ++ H +II+ D Sbjct: 238 GTLNNLSVLDLCAAPGGKTAQLIVSGAKVTALDVSKRRLEKLRCNLDRLHLYAEDIIEMD 297 Query: 104 ALKVDFEKFFN 114 A +K F+ Sbjct: 298 AFDYCPKKLFD 308 >gi|254780660|ref|YP_003065073.1| hypothetical protein CLIBASIA_02735 [Candidatus Liberibacter asiaticus str. psy62] Length = 244 Score = 24.6 bits (52), Expect = 1.8, Method: Compositional matrix adjust. Identities = 14/48 (29%), Positives = 26/48 (54%), Gaps = 4/48 (8%) Query: 234 RKTLRQSLKRLGGENLLHQAGIETNLRAENLSIEDFCRITNILTDNQD 281 ++ + +++K+ G ++L G TN+R E E I LTDN++ Sbjct: 63 KENIERAIKKAGSDDL----GNYTNIRYEGYGPEGVAIIIEALTDNRN 106 >gi|254780700|ref|YP_003065113.1| serine protease DO-like protease [Candidatus Liberibacter asiaticus str. psy62] Length = 489 Score = 24.6 bits (52), Expect = 2.0, Method: Compositional matrix adjust. Identities = 12/29 (41%), Positives = 16/29 (55%) Query: 9 SLKTILSHYKIIPKKYMGQNFLLDLNILK 37 S ILS +P K +G + L DL +LK Sbjct: 134 SFSVILSDDTELPAKLVGTDALFDLAVLK 162 >gi|255764486|ref|YP_003065119.2| ABC transporter, membrane spanning protein [Candidatus Liberibacter asiaticus str. psy62] Length = 493 Score = 23.5 bits (49), Expect = 4.0, Method: Compositional matrix adjust. Identities = 13/32 (40%), Positives = 20/32 (62%) Query: 34 NILKKIAESSGSLDGITVIEIGAGPGNLTQML 65 +IL KI +S SLD T +I G G+++ +L Sbjct: 94 SILHKIVDSLSSLDPDTKFKIQKGDGDISDLL 125 >gi|254780889|ref|YP_003065302.1| inosine 5'-monophosphate dehydrogenase [Candidatus Liberibacter asiaticus str. psy62] Length = 493 Score = 22.7 bits (47), Expect = 6.6, Method: Compositional matrix adjust. Identities = 14/47 (29%), Positives = 24/47 (51%), Gaps = 4/47 (8%) Query: 27 QNFLLDLNILKKIAESSGSLD----GITVIEIGAGPGNLTQMLLTLG 69 +NF L + IA + G+L G +I++G GPG++ + G Sbjct: 270 KNFPSLLVMAGNIATAEGALALIDAGADIIKVGIGPGSICTTRVVTG 316 >gi|254781038|ref|YP_003065451.1| putative DNA-binding/iron metalloprotein/AP endonuclease [Candidatus Liberibacter asiaticus str. psy62] Length = 363 Score = 22.3 bits (46), Expect = 8.7, Method: Compositional matrix adjust. Identities = 13/56 (23%), Positives = 28/56 (50%) Query: 30 LLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPI 85 +LD+ I + + ++ + + I + AGPG + +++ L K I + F+ I Sbjct: 62 VLDILIKQTLLRANMQISDMDSIAVTAGPGLMGGLIVGLMTAKAISYVSHKPFYAI 117 Database: las_proteome Posted date: Jun 5, 2011 6:30 PM Number of letters in database: 328,796 Number of sequences in database: 1233 Lambda K H 0.322 0.138 0.409 Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 181,241 Number of Sequences: 1233 Number of extensions: 7278 Number of successful extensions: 19 Number of sequences better than 100.0: 11 Number of HSP's better than 100.0 without gapping: 6 Number of HSP's successfully gapped in prelim test: 5 Number of HSP's that attempted gapping in prelim test: 13 Number of HSP's gapped (non-prelim): 11 length of query: 284 length of database: 328,796 effective HSP length: 73 effective length of query: 211 effective length of database: 238,787 effective search space: 50384057 effective search space used: 50384057 T: 11 A: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.9 bits) S2: 38 (19.2 bits)