HHsearch alignment for GI: 254780399 and conserved domain: COG0187
>COG0187 GyrB Type IIA topoisomerase (DNA gyrase/topo II, topoisomerase IV), B subunit [DNA replication, recombination, and repair].
Probab=98.62 E-value=7.3e-08 Score=76.18 Aligned_cols=258 Identities=15% Similarity=0.251 Sum_probs=148.7
Q ss_pred CCCCCHHHHHHHHHHHHHHC----CCCEEEEEEECCCEEEEEEEECCCCCCHHH--------HHHH-HCCCCCCCCHHHH
Q ss_conf 72269789999999877726----996799999809843999998889988989--------9987-5024665631244
Q gi|254780399|r 18 EIIERPSIAIKELIENSLDA----ESSRVETVIAGGGKSFFQITDNGFGMTSEE--------IPMA-VQRHCTSKISDDF 84 (594)
Q Consensus 18 evi~~~~svVkELveNSlDA----gAt~I~v~i~~~g~~~i~V~DnG~Gi~~~d--------l~~~-~~rh~TSKi~~dl 84 (594)
T Consensus 32 ~~~~GLhHlv~EVvDNsiDEalaG~~~~I~V~l~~d~--sisV~DnGRGIPvdiH~~~~~s~vEvI~T~LHAGGKFd~~~ 109 (635)
T COG0187 32 GDGRGLHHLVWEVVDNSIDEALAGYADRIDVTLHEDG--SISVEDNGRGIPVDIHPKEKVSAVEVIFTVLHAGGKFDNDS 109 (635)
T ss_pred CCCCCCEEEEEEEEECCHHHHHHCCCCEEEEEECCCC--EEEEEECCCCCCCCCCCCCCCCCEEEEEEEECCCCCCCCCC
T ss_conf 9999650468676313074786386857899994798--08998789877654277789871178887612576669995
Q ss_pred HHCCCCCCCHHHHHHHHHHE-EEEEEEECCCCCCCEEEEECCCCCC-CCCCCCC----CCCCEEEEEHHHHHHHHHHHCC
Q ss_conf 11214884048999876202-4899980489863015511010000-0211012----5675788521012112543103
Q gi|254780399|r 85 SNIHTFGFRGEALPSIGAVS-HLTLMSRPPQNNTGAQIAISGEKIS-SVRPVAM----NPGTIVEVRDLFFTIPARLNFL 158 (594)
Q Consensus 85 ~~i~t~GFRGEAL~sIa~vs-~l~i~s~~~~~~~~~~~~~~~g~~~-~~~~~~~----~~GT~V~V~~LF~N~PvRrkfl 158 (594)
T Consensus 110 Ykv-SGGLHGVG~SVVNALS~~l~v~v~r~gk--~y~q~f~~G~~~~~l~~ig~~~~~~~GT~V~F~----PD~~i--F- 179 (635)
T COG0187 110 YKV-SGGLHGVGVSVVNALSTWLEVEVKRDGK--IYRQRFERGVPVTPLEVIGSTDTKKTGTKVRFK----PDPEI--F- 179 (635)
T ss_pred CEE-ECCCCCCCEEEEECCCCEEEEEEEECCE--EEEEEEECCCCCCCCEECCCCCCCCCCCEEEEE----CCHHH--C-
T ss_conf 276-0677750416776165469999998987--999987189857774012567778995289997----48686--2-
Q ss_pred CCHHHHHHHHHHHHHHHHHCCCCCEEEEEECCCCEEE--EECCCCCHHHHHHHHHHHHHH--HHHHHHHCCCCCEEEEEE
Q ss_conf 4536899999999999873189974999987983079--971788104899999732166--654310022442036566
Q gi|254780399|r 159 KSEQVETNLITDVIRRMAIAYPKVSFTFSTIKSNRYK--MNFQSTNGNFPERISQVIGED--FINNAVELNEKSNEITLQ 234 (594)
Q Consensus 159 ks~~~e~~~I~~~v~~~aL~~P~V~f~l~~~~~~~~~--l~~~~~~~~l~~ri~~i~G~~--~~~~l~~i~~~~~~~~i~ 234 (594)
T Consensus 180 ~~~~f~~~~l~~RlrelA~L~~gl~I~l~d~r~~~~~~~~~ye---~Gl~~yv~~l~~~k~~l~~~~~~~~~~~~~~~vE 256 (635)
T COG0187 180 GETEFDYEILKRRLRELAFLNKGVKITLTDERTGEEKKEFHYE---GGLKDYVEYLNKGKTPLHEEIFYFNGEKDGIAVE 256 (635)
T ss_pred CCCCCCHHHHHHHHHHHHCCCCCCEEEEEECCCCCCCCEEECC---CHHHHHHHHHHCCCCCCCCCCEECCCCCCCEEEE
T ss_conf 7766679999999999860679977999724677554324346---0799999997258864565756513676663799
Q ss_pred EEECCCCCCCCCCHHHHHHHCCCHHHC---------HHHHHHHHHHHH--HHCCCC--------CCEEEEEEEEEEHH
Q ss_conf 662161103323206677515210007---------588899998755--442799--------98079999996065
Q gi|254780399|r 235 GYTGIPTFNRGNANQFYVFINGRTVQD---------KFILSTIRTAYA--ETIPLG--------RYPVVVLLLEIDPR 293 (594)
Q Consensus 235 G~is~P~~~r~~~~~q~ifVNgR~V~~---------~~l~~AI~~aY~--~~l~~g--------~~P~~vL~i~i~p~ 293 (594)
T Consensus 257 vA~q---~~d~~~e~~~SFvNnI~T~eGGTH~~Gfr~altr~in~y~~~~~~~k~~~l~g~Diregl~aviSvki~~P 331 (635)
T COG0187 257 VALQ---WNDGYSENILSFVNNIPTREGGTHEAGFRSALTRAINEYAKKKNLLKEGDLTGDDIREGLTAVISVKIPDP 331 (635)
T ss_pred EEEE---EECCCCEEEEEEECCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHCCEEEEEEECCCC
T ss_conf 9999---80688447998645855899860899999999999999999838665357777787503389999977998