HHsearch alignment for GI: 254780399 and conserved domain: PRK05644

>PRK05644 gyrB DNA gyrase subunit B; Validated.
Probab=98.95  E-value=3.2e-09  Score=85.97  Aligned_cols=223  Identities=15%  Similarity=0.232  Sum_probs=137.2

Q ss_pred             CCCHHHHHHHHHHHHHHC----CCCEEEEEEECCCEEEEEEEECCCCCCHH--------HHHHH-HCCCCCCCCHHHHHH
Q ss_conf             269789999999877726----99679999980984399999888998898--------99987-502466563124411
Q gi|254780399|r   20 IERPSIAIKELIENSLDA----ESSRVETVIAGGGKSFFQITDNGFGMTSE--------EIPMA-VQRHCTSKISDDFSN   86 (594)
Q Consensus        20 i~~~~svVkELveNSlDA----gAt~I~v~i~~~g~~~i~V~DnG~Gi~~~--------dl~~~-~~rh~TSKi~~dl~~   86 (594)
T Consensus        38 ~~glhhlv~EvvDNsiDEa~aG~~~~I~V~i~~Dg--sitV~DnGRGIPvd~h~~~~~~~~E~I~t~LhAGgKFd~~~Yk  115 (725)
T PRK05644         38 GRGLHHLVYEVVDNSIDEALAGYCDEIEVTIHADG--SVSVTDNGRGIPVDIHPKEGVSAAEVVMTVLHAGGKFDGNSYK  115 (725)
T ss_pred             CCCCEEEEEEEEHHHHHHHHCCCCCEEEEEECCCC--EEEEEECCCCCCCCCCCCCCCCHHHHEECCCCCCCCCCCCCCE
T ss_conf             98766889864214787986389967999996898--2999989976776345777972261300003556689999635


Q ss_pred             CCCCCCCHHHHHHHHHHE-EEEEEEECCCCCCCEEEEECCCCCCCC-C--CCCCCCCCEEEEEHHHHHHHHHHHCCCCHH
Q ss_conf             214884048999876202-489998048986301551101000002-1--101256757885210121125431034536
Q gi|254780399|r   87 IHTFGFRGEALPSIGAVS-HLTLMSRPPQNNTGAQIAISGEKISSV-R--PVAMNPGTIVEVRDLFFTIPARLNFLKSEQ  162 (594)
Q Consensus        87 i~t~GFRGEAL~sIa~vs-~l~i~s~~~~~~~~~~~~~~~g~~~~~-~--~~~~~~GT~V~V~~LF~N~PvRrkflks~~  162 (594)
T Consensus       116 v-SGGLHGVGasvVNALS~~~~VeV~RdGk--~y~q~f~~G~~~~~l~~ig~~~k~GT~ItF~------PD~~iF-~~~~  185 (725)
T PRK05644        116 V-SGGLHGVGVSVVNALSEWLELTVRRDGK--IHRQEFERGVPVAPLKVIGETDKTGTTVRFW------PDPEIF-TTTE  185 (725)
T ss_pred             E-ECCCCCCCCEEEEECCCEEEEEEEECCE--EEEEEEECCCCCCCCEECCCCCCCCEEEEEE------ECHHHC-CCCC
T ss_conf             3-1688880203216054708999998999--9999972897588852467888896599999------775661-7744


Q ss_pred             HHHHHHHHHHHHHHHCCCCCEEEEEECCC--C-EEEEECCCCCHHHHHHHHHHHHH--HHHHHHHHCCCCCEEEEEEEEE
Q ss_conf             89999999999987318997499998798--3-07997178810489999973216--6654310022442036566662
Q gi|254780399|r  163 VETNLITDVIRRMAIAYPKVSFTFSTIKS--N-RYKMNFQSTNGNFPERISQVIGE--DFINNAVELNEKSNEITLQGYT  237 (594)
Q Consensus       163 ~e~~~I~~~v~~~aL~~P~V~f~l~~~~~--~-~~~l~~~~~~~~l~~ri~~i~G~--~~~~~l~~i~~~~~~~~i~G~i  237 (594)
T Consensus       186 fd~d~L~~RlrelA~Ln~GL~I~l~Der~~~~~~~~f~y~g---Gi~dyv~~l~~~k~~l~~~~i~~~~e~~~i~vEvAl  262 (725)
T PRK05644        186 FDYETLAKRLRELAFLNSGVKITLTDEREGEGKEETFHYEG---GIKSFVEYLNRNKTPLHPEIIYFEGEKDGIGVEVAM  262 (725)
T ss_pred             CCHHHHHHHHHHHHHCCCCCEEEEEECCCCCCCEEEEEECC---CHHHHHHHHHCCCCCCCCCCEEEEEEECCEEEEEEE
T ss_conf             08999999999997217984799864577877614897147---678889886257876788855899864780699999


Q ss_pred             CCCCCCCCCCHHHHHHHCCCHHH
Q ss_conf             16110332320667751521000
Q gi|254780399|r  238 GIPTFNRGNANQFYVFINGRTVQ  260 (594)
Q Consensus       238 s~P~~~r~~~~~q~ifVNgR~V~  260 (594)
T Consensus       263 q---w~d~~~e~i~SFvN~I~T~  282 (725)
T PRK05644        263 Q---WNDSYSENVLCFTNNIPTR  282 (725)
T ss_pred             E---ECCCCCCEEEEEECCEECC
T ss_conf             8---5477663145542143558