HHsearch alignment for GI: 254780399 and conserved domain: PRK05644
>PRK05644 gyrB DNA gyrase subunit B; Validated.
Probab=98.95 E-value=3.2e-09 Score=85.97 Aligned_cols=223 Identities=15% Similarity=0.232 Sum_probs=137.2
Q ss_pred CCCHHHHHHHHHHHHHHC----CCCEEEEEEECCCEEEEEEEECCCCCCHH--------HHHHH-HCCCCCCCCHHHHHH
Q ss_conf 269789999999877726----99679999980984399999888998898--------99987-502466563124411
Q gi|254780399|r 20 IERPSIAIKELIENSLDA----ESSRVETVIAGGGKSFFQITDNGFGMTSE--------EIPMA-VQRHCTSKISDDFSN 86 (594)
Q Consensus 20 i~~~~svVkELveNSlDA----gAt~I~v~i~~~g~~~i~V~DnG~Gi~~~--------dl~~~-~~rh~TSKi~~dl~~ 86 (594)
T Consensus 38 ~~glhhlv~EvvDNsiDEa~aG~~~~I~V~i~~Dg--sitV~DnGRGIPvd~h~~~~~~~~E~I~t~LhAGgKFd~~~Yk 115 (725)
T PRK05644 38 GRGLHHLVYEVVDNSIDEALAGYCDEIEVTIHADG--SVSVTDNGRGIPVDIHPKEGVSAAEVVMTVLHAGGKFDGNSYK 115 (725)
T ss_pred CCCCEEEEEEEEHHHHHHHHCCCCCEEEEEECCCC--EEEEEECCCCCCCCCCCCCCCCHHHHEECCCCCCCCCCCCCCE
T ss_conf 98766889864214787986389967999996898--2999989976776345777972261300003556689999635
Q ss_pred CCCCCCCHHHHHHHHHHE-EEEEEEECCCCCCCEEEEECCCCCCCC-C--CCCCCCCCEEEEEHHHHHHHHHHHCCCCHH
Q ss_conf 214884048999876202-489998048986301551101000002-1--101256757885210121125431034536
Q gi|254780399|r 87 IHTFGFRGEALPSIGAVS-HLTLMSRPPQNNTGAQIAISGEKISSV-R--PVAMNPGTIVEVRDLFFTIPARLNFLKSEQ 162 (594)
Q Consensus 87 i~t~GFRGEAL~sIa~vs-~l~i~s~~~~~~~~~~~~~~~g~~~~~-~--~~~~~~GT~V~V~~LF~N~PvRrkflks~~ 162 (594)
T Consensus 116 v-SGGLHGVGasvVNALS~~~~VeV~RdGk--~y~q~f~~G~~~~~l~~ig~~~k~GT~ItF~------PD~~iF-~~~~ 185 (725)
T PRK05644 116 V-SGGLHGVGVSVVNALSEWLELTVRRDGK--IHRQEFERGVPVAPLKVIGETDKTGTTVRFW------PDPEIF-TTTE 185 (725)
T ss_pred E-ECCCCCCCCEEEEECCCEEEEEEEECCE--EEEEEEECCCCCCCCEECCCCCCCCEEEEEE------ECHHHC-CCCC
T ss_conf 3-1688880203216054708999998999--9999972897588852467888896599999------775661-7744
Q ss_pred HHHHHHHHHHHHHHHCCCCCEEEEEECCC--C-EEEEECCCCCHHHHHHHHHHHHH--HHHHHHHHCCCCCEEEEEEEEE
Q ss_conf 89999999999987318997499998798--3-07997178810489999973216--6654310022442036566662
Q gi|254780399|r 163 VETNLITDVIRRMAIAYPKVSFTFSTIKS--N-RYKMNFQSTNGNFPERISQVIGE--DFINNAVELNEKSNEITLQGYT 237 (594)
Q Consensus 163 ~e~~~I~~~v~~~aL~~P~V~f~l~~~~~--~-~~~l~~~~~~~~l~~ri~~i~G~--~~~~~l~~i~~~~~~~~i~G~i 237 (594)
T Consensus 186 fd~d~L~~RlrelA~Ln~GL~I~l~Der~~~~~~~~f~y~g---Gi~dyv~~l~~~k~~l~~~~i~~~~e~~~i~vEvAl 262 (725)
T PRK05644 186 FDYETLAKRLRELAFLNSGVKITLTDEREGEGKEETFHYEG---GIKSFVEYLNRNKTPLHPEIIYFEGEKDGIGVEVAM 262 (725)
T ss_pred CCHHHHHHHHHHHHHCCCCCEEEEEECCCCCCCEEEEEECC---CHHHHHHHHHCCCCCCCCCCEEEEEEECCEEEEEEE
T ss_conf 08999999999997217984799864577877614897147---678889886257876788855899864780699999
Q ss_pred CCCCCCCCCCHHHHHHHCCCHHH
Q ss_conf 16110332320667751521000
Q gi|254780399|r 238 GIPTFNRGNANQFYVFINGRTVQ 260 (594)
Q Consensus 238 s~P~~~r~~~~~q~ifVNgR~V~ 260 (594)
T Consensus 263 q---w~d~~~e~i~SFvN~I~T~ 282 (725)
T PRK05644 263 Q---WNDSYSENVLCFTNNIPTR 282 (725)
T ss_pred E---ECCCCCCEEEEEECCEECC
T ss_conf 8---5477663145542143558