HHsearch alignment for GI: 254780399 and conserved domain: PRK10549
>PRK10549 signal transduction histidine-protein kinase BaeS; Provisional.
Probab=97.88 E-value=5.7e-05 Score=55.34 Aligned_cols=119 Identities=9% Similarity=0.120 Sum_probs=57.6
Q ss_pred CCCCCCHHHHHHHHHHHHHHHHCCCEEEEECCCEEEEEECCCCCCCCCHHHHHHHHHHHHHHCCCCC-------------
Q ss_conf 2346783477779998999986695999607987999952611155678999999999998578866-------------
Q gi|254780399|r 461 EIIDLLEGECALIMEHDEDLHRLGIKAERFGPNAIAIREIPAILSKKNIPQLLRDIIDEIIDSSTTY------------- 527 (594)
Q Consensus 461 ~~i~Ls~~e~~~l~~~~~~l~~~Gf~~e~~g~~~~~i~~iP~~l~~~~~~~~l~dll~~l~~~~~~~------------- 527 (594)
T Consensus 311 ~~vdl~~ll~~~~~~~~~~~~~~~i~l~~~~~~~~~v~~D~-----~~L~qvl~NLl~NAikyt~~~g~I~I~~~~~~~~ 385 (467)
T PRK10549 311 TPVDLVPLLEVAGGAFRERFASRGLTLQFSLPDSATVFGDP-----DRLMQLFNNLLENSLRYTDSGGSLHISAEQHDKT 385 (467)
T ss_pred CCCCHHHHHHHHHHHHHHHHHHCCCEEEEECCCCCEEEECH-----HHHHHHHHHHHHHHHHHCCCCCEEEEEEEEECCE
T ss_conf 33338999999999999999845958999759884699779-----9999999999999998489998799999997999
Q ss_pred -----------CHHHHHHHHHHH----HHHHHHHHCCCCCCHHHHHHHHHHHHHCCCCCCCC-CCCEEEEEEC
Q ss_conf -----------468999999997----63486664588889899999999998188887887-8872799838
Q gi|254780399|r 528 -----------TLQDRIENILAT----MACYGSIRSGRKMQSIEMNRLLREMEKNPNSSQCN-HGRPTFIKLK 584 (594)
Q Consensus 528 -----------~~~~~~~~~l~s----~ACr~AIk~gd~L~~~e~~~Li~~L~~c~~P~~Cp-HGRPt~~~l~ 584 (594)
T Consensus 386 v~i~V~D~G~GI~~e~l~~IFe~Fyr~d~sr~r~~gGsGLGLaIvk~Iv~~HgG~I~v~s~~~~G~~f~i~LP 458 (467)
T PRK10549 386 LRLTFADSAPGVSDEQLQKLFERFYRTEGSRNRASGGSGLGLAICLNIVEAHNGRIIAAHSPFGGVSITVELP 458 (467)
T ss_pred EEEEEEEECCCCCHHHHHHHCCCCEECCCCCCCCCCCCCHHHHHHHHHHHHCCCEEEEEECCCCEEEEEEEEE
T ss_conf 9999998188879899998668987388888899996128999999999983998999967998579999952