HHsearch alignment for GI: 254780399 and conserved domain: PRK13557

>PRK13557 histidine kinase; Provisional.
Probab=97.47  E-value=0.00034  Score=49.78  Aligned_cols=120  Identities=13%  Similarity=0.102  Sum_probs=52.5

Q ss_pred             CCCCCCCCHHHHHHHHHHHHHHCCCCEEEEEEEC----CCEEEEEEEECC---CCCCHHHHHHHHCCCCCCCCHHHHHHC
Q ss_conf             2687226978999999987772699679999980----984399999888---998898999875024665631244112
Q gi|254780399|r   15 AAGEIIERPSIAIKELIENSLDAESSRVETVIAG----GGKSFFQITDNG---FGMTSEEIPMAVQRHCTSKISDDFSNI   87 (594)
Q Consensus        15 aagevi~~~~svVkELveNSlDAgAt~I~v~i~~----~g~~~i~V~DnG---~Gi~~~dl~~~~~rh~TSKi~~dl~~i   87 (594)
T Consensus        18 ~~~~~~~~~~~~~~~~v~~~~~~------~~~~d~~~~Dg~-I~~vN~af~~~tGYs~eEvi--Gk~~--~~L~----~p   82 (538)
T PRK13557         18 AAGDVSDHRSDIFFAAVETTRMP------MIVTDPRQPDNP-IVFANRAFLEMTGYAAEEII--GNNC--RFLQ----GP   82 (538)
T ss_pred             CCHHHHHHHHHHHHHHHHHCCCC------EEEECCCCCCCE-EEEECHHHHHHHCCCHHHHC--CCCH--HHCC----CC
T ss_conf             64105678899999999607973------899358999987-99983999998795999986--9998--7708----98


Q ss_pred             C-CCCCCHHHHHHHHHHE--EEEEEEECCCCCCCEEEEECCCCCCCCCCCCCCCCCEEEEEHHHHHHHHHHH
Q ss_conf             1-4884048999876202--4899980489863015511010000021101256757885210121125431
Q gi|254780399|r   88 H-TFGFRGEALPSIGAVS--HLTLMSRPPQNNTGAQIAISGEKISSVRPVAMNPGTIVEVRDLFFTIPARLN  156 (594)
Q Consensus        88 ~-t~GFRGEAL~sIa~vs--~l~i~s~~~~~~~~~~~~~~~g~~~~~~~~~~~~GT~V~V~~LF~N~PvRrk  156 (594)
T Consensus        83 ~~~~~~~~~~~~~i~~~~~~~~E~~n~rKDG~~~w~~~-------~i~pv~d~~G~~~~~~~i~~DITerk~  147 (538)
T PRK13557         83 ETDRATVADVRDAIAERREIATEILNYRKDGSSFWNAL-------FVSPVYNDAGDLVYFFGSQLDVSRRRD  147 (538)
T ss_pred             CCCHHHHHHHHHHHHCCCCEEEEEEEECCCCCEEEEEE-------EEEEEECCCCCEEEEEEEEECHHHHHH
T ss_conf             89999999999999759936879999879999999998-------999999899999999998834449999