HHsearch alignment for GI: 254780399 and conserved domain: PRK13557
>PRK13557 histidine kinase; Provisional.
Probab=97.47 E-value=0.00034 Score=49.78 Aligned_cols=120 Identities=13% Similarity=0.102 Sum_probs=52.5
Q ss_pred CCCCCCCCHHHHHHHHHHHHHHCCCCEEEEEEEC----CCEEEEEEEECC---CCCCHHHHHHHHCCCCCCCCHHHHHHC
Q ss_conf 2687226978999999987772699679999980----984399999888---998898999875024665631244112
Q gi|254780399|r 15 AAGEIIERPSIAIKELIENSLDAESSRVETVIAG----GGKSFFQITDNG---FGMTSEEIPMAVQRHCTSKISDDFSNI 87 (594)
Q Consensus 15 aagevi~~~~svVkELveNSlDAgAt~I~v~i~~----~g~~~i~V~DnG---~Gi~~~dl~~~~~rh~TSKi~~dl~~i 87 (594)
T Consensus 18 ~~~~~~~~~~~~~~~~v~~~~~~------~~~~d~~~~Dg~-I~~vN~af~~~tGYs~eEvi--Gk~~--~~L~----~p 82 (538)
T PRK13557 18 AAGDVSDHRSDIFFAAVETTRMP------MIVTDPRQPDNP-IVFANRAFLEMTGYAAEEII--GNNC--RFLQ----GP 82 (538)
T ss_pred CCHHHHHHHHHHHHHHHHHCCCC------EEEECCCCCCCE-EEEECHHHHHHHCCCHHHHC--CCCH--HHCC----CC
T ss_conf 64105678899999999607973------899358999987-99983999998795999986--9998--7708----98
Q ss_pred C-CCCCCHHHHHHHHHHE--EEEEEEECCCCCCCEEEEECCCCCCCCCCCCCCCCCEEEEEHHHHHHHHHHH
Q ss_conf 1-4884048999876202--4899980489863015511010000021101256757885210121125431
Q gi|254780399|r 88 H-TFGFRGEALPSIGAVS--HLTLMSRPPQNNTGAQIAISGEKISSVRPVAMNPGTIVEVRDLFFTIPARLN 156 (594)
Q Consensus 88 ~-t~GFRGEAL~sIa~vs--~l~i~s~~~~~~~~~~~~~~~g~~~~~~~~~~~~GT~V~V~~LF~N~PvRrk 156 (594)
T Consensus 83 ~~~~~~~~~~~~~i~~~~~~~~E~~n~rKDG~~~w~~~-------~i~pv~d~~G~~~~~~~i~~DITerk~ 147 (538)
T PRK13557 83 ETDRATVADVRDAIAERREIATEILNYRKDGSSFWNAL-------FVSPVYNDAGDLVYFFGSQLDVSRRRD 147 (538)
T ss_pred CCCHHHHHHHHHHHHCCCCEEEEEEEECCCCCEEEEEE-------EEEEEECCCCCEEEEEEEEECHHHHHH
T ss_conf 89999999999999759936879999879999999998-------999999899999999998834449999