HHsearch alignment for GI: 254780399 and conserved domain: TIGR01925
>TIGR01925 spIIAB anti-sigma F factor; InterPro: IPR010194 This entry describes the SpoIIAB anti-sigma F factor. Sigma F regulates spore development in B subtilis. SpoIIAB binds to sigma F, preventing formation of the transcription complex at the promoter . SpoIIAA (anti-anti-sigma F factor) binds to SpoIIAB to inhibit association with sigma F, however SpoIIAB can phosphorylate SpoIIAA, causing disassociation of the SpoIIAA/B complex . The SpoIIE phosphatase dephosphorylates SpoIIAA.; GO: 0004674 protein serine/threonine kinase activity, 0005524 ATP binding, 0016989 sigma factor antagonist activity, 0006468 protein amino acid phosphorylation, 0030435 sporulation, 0045892 negative regulation of transcription DNA-dependent.
Probab=95.47 E-value=0.022 Score=36.80 Aligned_cols=67 Identities=21% Similarity=0.321 Sum_probs=51.2
Q ss_pred CCCHHHHHHHHHHHHHHCCC-------CEEEEEEECCCEEEEEEEECCCCCCHHHHHHHHCCCCCCCCHHHHHHCCCCCC
Q ss_conf 26978999999987772699-------67999998098439999988899889899987502466563124411214884
Q gi|254780399|r 20 IERPSIAIKELIENSLDAES-------SRVETVIAGGGKSFFQITDNGFGMTSEEIPMAVQRHCTSKISDDFSNIHTFGF 92 (594)
Q Consensus 20 i~~~~svVkELveNSlDAgA-------t~I~v~i~~~g~~~i~V~DnG~Gi~~~dl~~~~~rh~TSKi~~dl~~i~t~GF 92 (594)
T Consensus 37 l~diK~~VSEAVTNAIIHGYE~~~~~~V~I~~~~~d~~~-~~~v~D~G~GI--~~lE~A~~PLyTskP--eLER-SGMGF 110 (137)
T TIGR01925 37 LTDIKTAVSEAVTNAIIHGYEENKEGVVIISATIEDDEV-SITVRDEGIGI--ENLEEAREPLYTSKP--ELER-SGMGF 110 (137)
T ss_pred HHHHHHHHHHHHHCCEEECEEECCCCEEEEEEEEECCEE-EEEEEECCCCH--HHHHHHCCCCCCCCC--CCCC-CCCCE
T ss_conf 555543332232120531456379977899999605489-99986467572--337853266457998--7220-67860