HHsearch alignment for GI: 254780399 and conserved domain: TIGR02938
>TIGR02938 nifL_nitrog nitrogen fixation negative regulator NifL; InterPro: IPR014285 NifL modulates the activity of the nitrogen fixation positive regulator protein NifA, acting as a negative regulator by binding NifA. NifA and NifL are encoded by adjacent genes..
Probab=97.01 E-value=0.00037 Score=49.51 Aligned_cols=87 Identities=20% Similarity=0.301 Sum_probs=50.4
Q ss_pred HHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEECCCEEEEEECCCCCCCC-CH
Q ss_conf 58998999999985221038842111122223467834777799989999866959996079879999526111556-78
Q gi|254780399|r 431 QHAAHERLIFEKMRQDFNSTKITSQTLLTPEIIDLLEGECALIMEHDEDLHRLGIKAERFGPNAIAIREIPAILSKK-NI 509 (594)
Q Consensus 431 QHAAhERI~yE~l~~~~~~~~~~~Q~Ll~P~~i~Ls~~e~~~l~~~~~~l~~~Gf~~e~~g~~~~~i~~iP~~l~~~-~~ 509 (594)
T Consensus 320 qa~~ag~e~~e~L~~~IP---~s~~e~~~--pVNlN~~lrdvi~l~T~rLLA~GIvVd-W~Pa----~~LP~~~G~e~~l 389 (496)
T TIGR02938 320 QALAAGREALEALEKVIP---QSDAEAVV--PVNLNQVLRDVITLLTERLLAAGIVVD-WQPA----AVLPAVLGSESRL 389 (496)
T ss_pred HHHHHHHHHHHHHCCCCC---CCCCCCCC--CCCHHHHHHHHHHHHHHHHHHCCCEEC-CCCC----CCCCHHHCCCHHH
T ss_conf 998863999997505788---77244546--642778999999861055755754151-6561----0162220785257
Q ss_pred HHHHHHHHHHHHHCCCCC
Q ss_conf 999999999998578866
Q gi|254780399|r 510 PQLLRDIIDEIIDSSTTY 527 (594)
Q Consensus 510 ~~~l~dll~~l~~~~~~~ 527 (594)
T Consensus 390 RslfK~LvdNAIeaM~~~ 407 (496)
T TIGR02938 390 RSLFKALVDNAIEAMAQK 407 (496)
T ss_pred HHHHHHHHHHHHHHHHHC
T ss_conf 899999999999985307