HHsearch alignment for GI: 254780399 and conserved domain: cd03482

>cd03482 MutL_Trans_MutL MutL_Trans_MutL: transducer domain, having a ribosomal S5 domain 2-like fold, found in proteins similar to Escherichia coli MutL. EcMutL belongs to the DNA mismatch repair (MutL/MLH1/PMS2) family. This transducer domain is homologous to the second domain of the DNA gyrase B subunit, which is known to be important in nucleotide hydrolysis and the transduction of structural signals from the ATP-binding site to the DNA breakage/reunion regions of the enzymes. It has been suggested that during initiation of DNA mismatch repair in E. coli, the mismatch recognition protein MutS recruits MutL in the presence of ATP. The MutS(ATP)-MutL ternary complex formed, then recruits the latent endonuclease MutH. Prokaryotic MutS and MutL are homodimers.
Probab=100.00  E-value=1.4e-33  Score=260.95  Aligned_cols=122  Identities=42%  Similarity=0.821  Sum_probs=119.7

Q ss_pred             HHHHHHHHHHHHHHHHHHCCCCCEEEEEEEEECCCCCCCCCCHHHHHHHCCCHHHCHHHHHHHHHHHHHHCCCCCCEEEE
Q ss_conf             99999732166654310022442036566662161103323206677515210007588899998755442799980799
Q gi|254780399|r  206 PERISQVIGEDFINNAVELNEKSNEITLQGYTGIPTFNRGNANQFYVFINGRTVQDKFILSTIRTAYAETIPLGRYPVVV  285 (594)
Q Consensus       206 ~~ri~~i~G~~~~~~l~~i~~~~~~~~i~G~is~P~~~r~~~~~q~ifVNgR~V~~~~l~~AI~~aY~~~l~~g~~P~~v  285 (594)
T Consensus         2 l~Ri~~i~G~~~~~~li~v~~~~~~~~i~G~is~p~~~r~~~~~q~~fVN~R~V~~~~l~~ai~~aY~~~l~~~r~P~~v   81 (123)
T cd03482           2 LQRLADILGEDFAEQALAIDEEAGGLRLSGWIALPTFARSQADIQYFYVNGRMVRDKLISHAVRQAYSDVLHGGRHPAYV   81 (123)
T ss_pred             HHHHHHHHCHHHHHHCEEEEEECCCEEEEEEEECCHHCCCCCCCEEEEECCCEECCHHHHHHHHHHHHHHCCCCCCEEEE
T ss_conf             12999881999897072887677988999999484431477863799991837785899999999998656599840899


Q ss_pred             EEEEEEHHHHCCCCCCHHHHHHHCCHHHHHHHHHHHHHHHHH
Q ss_conf             999960657124757111125535979999999997898875
Q gi|254780399|r  286 LLLEIDPRQVDVNVHPAKSYIRFRNPTIIRNFIIQSIQKAIN  327 (594)
Q Consensus       286 L~i~i~p~~vDVNVHP~K~eVrf~de~~i~~~i~~~i~~~L~  327 (594)
T Consensus        82 L~l~i~p~~vDVNVHP~K~EVrF~~e~~I~~~i~~av~~aLa  123 (123)
T cd03482          82 LYLELDPAQVDVNVHPAKHEVRFRDSRLVHDFIYHAVKKALA  123 (123)
T ss_pred             EEEECCHHHEECCCCCCCCEEEECCHHHHHHHHHHHHHHHHC
T ss_conf             999747687872369863079985888999999999999729