HHsearch alignment for GI: 254780399 and conserved domain: cd03484
>cd03484 MutL_Trans_hPMS_2_like MutL_Trans_hPMS2_like: transducer domain, having a ribosomal S5 domain 2-like fold, found in proteins similar to human PSM2 (hPSM2). hPSM2 belongs to the DNA mismatch repair (MutL/MLH1/PMS2) family. This transducer domain is homologous to the second domain of the DNA gyrase B subunit, which is known to be important in nucleotide hydrolysis and the transduction of structural signals from ATP-binding site to the DNA breakage/reunion regions of the enzymes. Included in this group are proteins similar to yeast PMS1. The yeast MLH1-PMS1 and the human MLH1-PMS2 heterodimers play a role in meiosis. hMLH1-hPMS2 also participates in the repair of all DNA mismatch repair (MMR) substrates. Cells lacking hPMS2 have a strong mutator phenotype and display microsatellite instability (MSI). Mutation in hPMS2 causes predisposition to HPNCC and Turcot syndrome.
Probab=99.96 E-value=2e-29 Score=231.19 Aligned_cols=122 Identities=23% Similarity=0.451 Sum_probs=114.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHCCCCC-----------------EEEEEEEEECCCC--CCCCCCHHHHHHHCCCHHHCHHH
Q ss_conf 4899999732166654310022442-----------------0365666621611--03323206677515210007588
Q gi|254780399|r 204 NFPERISQVIGEDFINNAVELNEKS-----------------NEITLQGYTGIPT--FNRGNANQFYVFINGRTVQDKFI 264 (594)
Q Consensus 204 ~l~~ri~~i~G~~~~~~l~~i~~~~-----------------~~~~i~G~is~P~--~~r~~~~~q~ifVNgR~V~~~~l 264 (594)
T Consensus 1 ~l~~~I~~VfG~~~~~~Lipi~~~~~~~~~~~~~~~~~~~~~~~~~i~G~iskp~~~~~R~~~~~q~~fVN~RpV~~~~l 80 (142)
T cd03484 1 DIKDNIINVFGGKVIKGLIPINLELDVNPTKEELDSDEDLADSEVKITGYISKPSHGCGRSSSDRQFFYINGRPVDLKKV 80 (142)
T ss_pred CHHHHHHHHCCHHHHHCCCCEEECCCCCCCCCCCCCCCCCCCCCEEEEEEEECCCCCCCCCCCCCEEEEECCCCCCCHHH
T ss_conf 97776888629867803652453377654100013456678997899999857866756688887899991978488899
Q ss_pred HHHHHHHHHHHCCCCCCEEEEEEEEEEHHHHCCCCCCHHHHHHHCCHHHHHHHHHHHHHHHH
Q ss_conf 89999875544279998079999996065712475711112553597999999999789887
Q gi|254780399|r 265 LSTIRTAYAETIPLGRYPVVVLLLEIDPRQVDVNVHPAKSYIRFRNPTIIRNFIIQSIQKAI 326 (594)
Q Consensus 265 ~~AI~~aY~~~l~~g~~P~~vL~i~i~p~~vDVNVHP~K~eVrf~de~~i~~~i~~~i~~~L 326 (594)
T Consensus 81 ~~ai~~~y~~-~~~~~~P~~vL~i~ipp~~vDVNVhP~K~eV~f~~e~~i~~~i~~al~~~~ 141 (142)
T cd03484 81 AKLINEVYKS-FNSRQYPFFILNISLPTSLYDVNVTPDKRTVLLHDEDRLIDTLKTSLSELF 141 (142)
T ss_pred HHHHHHHHHH-CCCCCCCEEEEEEEECHHHEEECCCCCCCEEEECCHHHHHHHHHHHHHHHH
T ss_conf 9999999986-267898579999984879977037987458997467999999999999972