HHsearch alignment for GI: 254780399 and conserved domain: smart00433
>smart00433 TOP2c TopoisomeraseII. Eukaryotic DNA topoisomerase II, GyrB, ParE
Probab=98.90 E-value=1.8e-08 Score=80.51 Aligned_cols=250 Identities=15% Similarity=0.193 Sum_probs=144.1
Q ss_pred HHHHHHHHHHHC----CCCEEEEEEECCCEEEEEEEECCCCCCHHH--------HHHH-HCCCCCCCCHHHHHHCCCCCC
Q ss_conf 999999877726----996799999809843999998889988989--------9987-502466563124411214884
Q gi|254780399|r 26 AIKELIENSLDA----ESSRVETVIAGGGKSFFQITDNGFGMTSEE--------IPMA-VQRHCTSKISDDFSNIHTFGF 92 (594)
Q Consensus 26 vVkELveNSlDA----gAt~I~v~i~~~g~~~i~V~DnG~Gi~~~d--------l~~~-~~rh~TSKi~~dl~~i~t~GF 92 (594)
T Consensus 5 l~~EIldNsvDe~~~g~~~~I~V~i~~dg--sisV~DnGrGIPv~~h~~~~~~~~E~i~t~LhaGgkFd~~~yk~-sGGl 81 (594)
T smart00433 5 LVDEIVDNAADEALAGYMDTIKVTIDKDN--SISVEDNGRGIPVEIHPKEKKYAPEVIFTVLHAGGKFDDDAYKV-SGGL 81 (594)
T ss_pred EEEEEEECHHHHHHHCCCCEEEEEECCCC--EEEEEECCCCCCCCCCCCCCCCCEEEEEEECCCCCCCCCCCCEE-ECCC
T ss_conf 98456673776884289977999992798--49999899765423667679712014761322436889985167-0678
Q ss_pred CHHHHHHHHHHE-EEEEEEECCCCCCCEEEEEC-CCCCCC---CCCCCCCCCCEEEEEHHHHHHHHHHHCCCCHHHHHHH
Q ss_conf 048999876202-48999804898630155110-100000---2110125675788521012112543103453689999
Q gi|254780399|r 93 RGEALPSIGAVS-HLTLMSRPPQNNTGAQIAIS-GEKISS---VRPVAMNPGTIVEVRDLFFTIPARLNFLKSEQVETNL 167 (594)
Q Consensus 93 RGEAL~sIa~vs-~l~i~s~~~~~~~~~~~~~~-~g~~~~---~~~~~~~~GT~V~V~~LF~N~PvRrkflks~~~e~~~ 167 (594)
T Consensus 82 hGvGasvvNalS~~f~Vev~r~g--k~y~q~f~~~g~~~~~~~~~~~~~k~GT~I~F~------PD~~iF~~~~~~~~~~ 153 (594)
T smart00433 82 HGVGASVVNALSTEFEVEVARDG--KEYKQSFSNNGKPLSEPKIIGDTKKDGTKVTFK------PDLEIFGMTTDDDFEL 153 (594)
T ss_pred CCCCEEEEEECCCEEEEEEEECC--EEEEEEECCCCEECCCCEECCCCCCCCEEEEEE------ECHHHHCCCCCCCHHH
T ss_conf 87114765841273999999899--999999908884898855547889995199999------7878839975466999
Q ss_pred HHHHHHHHHHCCCCCEEEEEECCCCEEEEECCCCCHHHHHHHHHHHHHH--HHHHHHHCCCCCEEEEEEEEECCCCCCCC
Q ss_conf 9999999873189974999987983079971788104899999732166--65431002244203656666216110332
Q gi|254780399|r 168 ITDVIRRMAIAYPKVSFTFSTIKSNRYKMNFQSTNGNFPERISQVIGED--FINNAVELNEKSNEITLQGYTGIPTFNRG 245 (594)
Q Consensus 168 I~~~v~~~aL~~P~V~f~l~~~~~~~~~l~~~~~~~~l~~ri~~i~G~~--~~~~l~~i~~~~~~~~i~G~is~P~~~r~ 245 (594)
T Consensus 154 l~~Rl~~~A~Ln~gl~I~lnder~~~~~~f~~--~~Gl~dyv~~~~~~~~~~~~~~~~~~~~~~~~~~eva~~~---s~~ 228 (594)
T smart00433 154 LKRRLRELAFLNKGVKITLNDERSDEEETFLF--EGGIKDYVELLNKNKELLSPEPTYIEGEKDNIRVEVAFQY---TDG 228 (594)
T ss_pred HHHHHHHHHCCCCCCEEEEEEECCCCEEEEEC--CCCHHHHHHHHCCCCCCCCCCCEEEEEEECCCEEEEEEEE---CCC
T ss_conf 99999998423888389999843784578971--7879999998538987678874587787168269999996---598
Q ss_pred CCHHHHHHHCCCHHHC---------HHHHHHHHHHHHHHC-CC---------CCCEEEEEEEEEE
Q ss_conf 3206677515210007---------588899998755442-79---------9980799999960
Q gi|254780399|r 246 NANQFYVFINGRTVQD---------KFILSTIRTAYAETI-PL---------GRYPVVVLLLEID 291 (594)
Q Consensus 246 ~~~~q~ifVNgR~V~~---------~~l~~AI~~aY~~~l-~~---------g~~P~~vL~i~i~ 291 (594)
T Consensus 229 ~~~~~~SFvN~I~T~~GGTHv~gf~~al~~~i~~~~~k~~~~K~~~i~~~DIregL~~vIsvki~ 293 (594)
T smart00433 229 YSENIVSFVNNIATTEGGTHENGFKDALTRVINEYAKKKKKLKEKNIKGEDVREGLTAFISVKIP 293 (594)
T ss_pred CCCCCCEEEEEEECCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHCCCEEEEEEEEC
T ss_conf 87210002314788999848899999999999999998474244679999985233699999824