HHsearch alignment for GI: 254780399 and conserved domain: smart00433

>smart00433 TOP2c TopoisomeraseII. Eukaryotic DNA topoisomerase II, GyrB, ParE
Probab=98.90  E-value=1.8e-08  Score=80.51  Aligned_cols=250  Identities=15%  Similarity=0.193  Sum_probs=144.1

Q ss_pred             HHHHHHHHHHHC----CCCEEEEEEECCCEEEEEEEECCCCCCHHH--------HHHH-HCCCCCCCCHHHHHHCCCCCC
Q ss_conf             999999877726----996799999809843999998889988989--------9987-502466563124411214884
Q gi|254780399|r   26 AIKELIENSLDA----ESSRVETVIAGGGKSFFQITDNGFGMTSEE--------IPMA-VQRHCTSKISDDFSNIHTFGF   92 (594)
Q Consensus        26 vVkELveNSlDA----gAt~I~v~i~~~g~~~i~V~DnG~Gi~~~d--------l~~~-~~rh~TSKi~~dl~~i~t~GF   92 (594)
T Consensus         5 l~~EIldNsvDe~~~g~~~~I~V~i~~dg--sisV~DnGrGIPv~~h~~~~~~~~E~i~t~LhaGgkFd~~~yk~-sGGl   81 (594)
T smart00433        5 LVDEIVDNAADEALAGYMDTIKVTIDKDN--SISVEDNGRGIPVEIHPKEKKYAPEVIFTVLHAGGKFDDDAYKV-SGGL   81 (594)
T ss_pred             EEEEEEECHHHHHHHCCCCEEEEEECCCC--EEEEEECCCCCCCCCCCCCCCCCEEEEEEECCCCCCCCCCCCEE-ECCC
T ss_conf             98456673776884289977999992798--49999899765423667679712014761322436889985167-0678


Q ss_pred             CHHHHHHHHHHE-EEEEEEECCCCCCCEEEEEC-CCCCCC---CCCCCCCCCCEEEEEHHHHHHHHHHHCCCCHHHHHHH
Q ss_conf             048999876202-48999804898630155110-100000---2110125675788521012112543103453689999
Q gi|254780399|r   93 RGEALPSIGAVS-HLTLMSRPPQNNTGAQIAIS-GEKISS---VRPVAMNPGTIVEVRDLFFTIPARLNFLKSEQVETNL  167 (594)
Q Consensus        93 RGEAL~sIa~vs-~l~i~s~~~~~~~~~~~~~~-~g~~~~---~~~~~~~~GT~V~V~~LF~N~PvRrkflks~~~e~~~  167 (594)
T Consensus        82 hGvGasvvNalS~~f~Vev~r~g--k~y~q~f~~~g~~~~~~~~~~~~~k~GT~I~F~------PD~~iF~~~~~~~~~~  153 (594)
T smart00433       82 HGVGASVVNALSTEFEVEVARDG--KEYKQSFSNNGKPLSEPKIIGDTKKDGTKVTFK------PDLEIFGMTTDDDFEL  153 (594)
T ss_pred             CCCCEEEEEECCCEEEEEEEECC--EEEEEEECCCCEECCCCEECCCCCCCCEEEEEE------ECHHHHCCCCCCCHHH
T ss_conf             87114765841273999999899--999999908884898855547889995199999------7878839975466999


Q ss_pred             HHHHHHHHHHCCCCCEEEEEECCCCEEEEECCCCCHHHHHHHHHHHHHH--HHHHHHHCCCCCEEEEEEEEECCCCCCCC
Q ss_conf             9999999873189974999987983079971788104899999732166--65431002244203656666216110332
Q gi|254780399|r  168 ITDVIRRMAIAYPKVSFTFSTIKSNRYKMNFQSTNGNFPERISQVIGED--FINNAVELNEKSNEITLQGYTGIPTFNRG  245 (594)
Q Consensus       168 I~~~v~~~aL~~P~V~f~l~~~~~~~~~l~~~~~~~~l~~ri~~i~G~~--~~~~l~~i~~~~~~~~i~G~is~P~~~r~  245 (594)
T Consensus       154 l~~Rl~~~A~Ln~gl~I~lnder~~~~~~f~~--~~Gl~dyv~~~~~~~~~~~~~~~~~~~~~~~~~~eva~~~---s~~  228 (594)
T smart00433      154 LKRRLRELAFLNKGVKITLNDERSDEEETFLF--EGGIKDYVELLNKNKELLSPEPTYIEGEKDNIRVEVAFQY---TDG  228 (594)
T ss_pred             HHHHHHHHHCCCCCCEEEEEEECCCCEEEEEC--CCCHHHHHHHHCCCCCCCCCCCEEEEEEECCCEEEEEEEE---CCC
T ss_conf             99999998423888389999843784578971--7879999998538987678874587787168269999996---598


Q ss_pred             CCHHHHHHHCCCHHHC---------HHHHHHHHHHHHHHC-CC---------CCCEEEEEEEEEE
Q ss_conf             3206677515210007---------588899998755442-79---------9980799999960
Q gi|254780399|r  246 NANQFYVFINGRTVQD---------KFILSTIRTAYAETI-PL---------GRYPVVVLLLEID  291 (594)
Q Consensus       246 ~~~~q~ifVNgR~V~~---------~~l~~AI~~aY~~~l-~~---------g~~P~~vL~i~i~  291 (594)
T Consensus       229 ~~~~~~SFvN~I~T~~GGTHv~gf~~al~~~i~~~~~k~~~~K~~~i~~~DIregL~~vIsvki~  293 (594)
T smart00433      229 YSENIVSFVNNIATTEGGTHENGFKDALTRVINEYAKKKKKLKEKNIKGEDVREGLTAFISVKIP  293 (594)
T ss_pred             CCCCCCEEEEEEECCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHCCCEEEEEEEEC
T ss_conf             87210002314788999848899999999999999998474244679999985233699999824