HHsearch results for GI: 254780399 and protein with PDBid: 3h4l_A
>3h4l_A DNA mismatch repair protein PMS1; ATP binding, DNA repair, DNA damage, nucleus, phosphop DNA binding protein, protein binding; HET: DNA ANP; 2.50A {Saccharomyces cerevisiae}
Probab=100.00 E-value=0 Score=710.53 Aligned_cols=329 Identities=25% Similarity=0.416 Sum_probs=304.0
Q ss_pred CCCCCCCHHHHHHHCCCCCCCCHHHHHHHHHHHHHHCCCCEEEEEEECCCEEEEEEEECCCCCCHHHHHHHHCCCCCCCC
Q ss_conf 96745888999985268722697899999998777269967999998098439999988899889899987502466563
Q gi|254780399|r 1 MKIRKLSEKIINQIAAGEIIERPSIAIKELIENSLDAESSRVETVIAGGGKSFFQITDNGFGMTSEEIPMAVQRHCTSKI 80 (594)
Q Consensus 1 m~I~~L~~~~~~~Iaagevi~~~~svVkELveNSlDAgAt~I~v~i~~~g~~~i~V~DnG~Gi~~~dl~~~~~rh~TSKi 80 (594)
.+|++||++++++|||||||+||++|||||||||||||||+|.|.++++|+++|+|.|||+||+++||++++.||+||||
T Consensus 4 ~~I~~L~~~~i~~I~agevI~~p~svvkELveNsiDA~At~I~v~i~~~g~~~i~V~DnG~Gi~~~d~~~~~~r~~TSK~ 83 (367)
T 3h4l_A 4 TQIHQINDIDVHRITSGQVITDLTTAVKELVDNSIDANANQIEIIFKDYGLESIECSDNGDGIDPSNYEFLALKHYTSKI 83 (367)
T ss_dssp ---------CTHHHHHHHHCCSHHHHHHHHHHHHHHTTCSEEEEEEETTTTSEEEEEECSCCCCGGGTTTTTCCEEC---
T ss_pred CCCEECCHHHHHHHCCCCEECCHHHHHHHHHHHHHCCCCCEEEEEEECCCEEEEEEEECCCCCCHHHHHHHHHHCCCCCC
T ss_conf 30201899999880896644688999999997776489598999998798469999989998897899876542058755
Q ss_pred H--HHHHHCCCCCCCHHHHHHHHHHEEEEEEEECCCCCCCEEEEECCCCCCCCCCCCCCCCCEEEEEHHHHHHHHHHH-C
Q ss_conf 1--244112148840489998762024899980489863015511010000021101256757885210121125431-0
Q gi|254780399|r 81 S--DDFSNIHTFGFRGEALPSIGAVSHLTLMSRPPQNNTGAQIAISGEKISSVRPVAMNPGTIVEVRDLFFTIPARLN-F 157 (594)
Q Consensus 81 ~--~dl~~i~t~GFRGEAL~sIa~vs~l~i~s~~~~~~~~~~~~~~~g~~~~~~~~~~~~GT~V~V~~LF~N~PvRrk-f 157 (594)
+ +||.++.|||||||||+|||+||+++|+||+.++..++.....+|.+...+|++++.||+|+|+|||||+||||| |
T Consensus 84 ~~~~dl~~~~t~GfRGeAL~sI~~vs~l~I~S~~~~~~~~~~~~~~~g~~~~~~~~~~~~GTtV~V~dLF~n~PvRrk~~ 163 (367)
T 3h4l_A 84 AKFQDVAKVQTLGFRGEALSSLCGIAKLSVITTTSPPKADKLEYDMVGHITSKTTTSRNKGTTVLVSQLFHNLPVRQKEF 163 (367)
T ss_dssp ------CCCCEEEETTHHHHHHHHSSEEEEEEESSTTCEEEEEECTTCCEEEEEEECCSSEEEEEEESTTTTCHHHHHHH
T ss_pred CCCCCCCCCCCCCCCHHHHHHHHHHCCEEEEEEECCCCCCEEEEEECCCCCCCCCCCCCCCCCEEEECCCCCCHHHHHHH
T ss_conf 53223311246664407899887525647998505876334999833752223543456666346320305876778876
Q ss_pred CCCHHHHHHHHHHHHHHHHHCCCCCEEEEEECCCC--EEEEECCCCCHHHHHHHHHHHHHHHHHHHHHCCCC--------
Q ss_conf 34536899999999999873189974999987983--07997178810489999973216665431002244--------
Q gi|254780399|r 158 LKSEQVETNLITDVIRRMAIAYPKVSFTFSTIKSN--RYKMNFQSTNGNFPERISQVIGEDFINNAVELNEK-------- 227 (594)
Q Consensus 158 lks~~~e~~~I~~~v~~~aL~~P~V~f~l~~~~~~--~~~l~~~~~~~~l~~ri~~i~G~~~~~~l~~i~~~-------- 227 (594)
+|+.++|+.+|.+++++|||+||+|+|+|.+...+ ......+++++++.+++.++||.+..+.+.+++..
T Consensus 164 ~k~~~~e~~~I~~~v~~yAL~~p~V~F~l~~~~~~~~~~~~l~~~~~~~~~~~i~~v~G~~~~~~l~~~~~~~~~~~~~~ 243 (367)
T 3h4l_A 164 SKTFKRQFTKCLTVIQGYAIINAAIKFSVWNITPKGKKNLILSTMRNSSMRKNISSVFGAGGMRGLEEVDLVLDLNPFKN 243 (367)
T ss_dssp HTTHHHHHHHHHHHHHHHHHHCTTCEEEEEEECTTSCEEEEEECCSSCCHHHHHHHHHCTTTTTTEEEEEEEEECGGGCC
T ss_pred HCCCHHHHHHHHHHHHHHHHCCCCEEEEEEEECCCCCEEEEECCCCCCCHHHHHHHHHCHHHHHCCCEEEHHCCCCCHHH
T ss_conf 50102677777889864432479706999863378740365314568589999999869777720402200124551010
Q ss_pred ---------------CEEEEEEEEECCCCC--CCCCCHHHHHHHCCCHHHCHHHHHHHHHHHHHHCCCCCCEEEEEEEEE
Q ss_conf ---------------203656666216110--332320667751521000758889999875544279998079999996
Q gi|254780399|r 228 ---------------SNEITLQGYTGIPTF--NRGNANQFYVFINGRTVQDKFILSTIRTAYAETIPLGRYPVVVLLLEI 290 (594)
Q Consensus 228 ---------------~~~~~i~G~is~P~~--~r~~~~~q~ifVNgR~V~~~~l~~AI~~aY~~~l~~g~~P~~vL~i~i 290 (594)
...++++||++.|+. +|+++++||+|||||||+++.|.+||+++|++ ++.++||+|+|+|+|
T Consensus 244 ~~~~~~~~~~~~~~~~~~~~i~G~is~p~~~~~r~~~~~q~ifVNgR~V~~~~l~~ai~~~y~~-~~~~~~P~~~L~i~~ 322 (367)
T 3h4l_A 244 RMLGKYTDDPDFLDLDYKIRVKGYISQNSFGCGRNSKDRQFIYVNKRPVEYSTLLKCCNEVYKT-FNNVQFPAVFLNLEL 322 (367)
T ss_dssp CCC------------CCEEEEEEEEECCSTTCSBSSSSSEEEEETTEEECCHHHHHHHHHHHHT-TCSSCBCCEEEEEEC
T ss_pred CCCCCCCCCCCCCCCCCCEEEEEEECCCCCCCCCCCCCEEEEEECCEEECCHHHHHHHHHHHHH-CCCCCCCEEEEEEEE
T ss_conf 0122224553222567747999998178301245778538999948782458999999999974-558998189999996
Q ss_pred EHHHHCCCCCCHHHHHHHCCHHHHHHHHHHHHHHHHHHCC
Q ss_conf 0657124757111125535979999999997898875317
Q gi|254780399|r 291 DPRQVDVNVHPAKSYIRFRNPTIIRNFIIQSIQKAINKKG 330 (594)
Q Consensus 291 ~p~~vDVNVHP~K~eVrf~de~~i~~~i~~~i~~~L~~~~ 330 (594)
||+.|||||||+|+||+|+||+.|.++|.++|+++|....
T Consensus 323 p~~~vDvNVhP~K~eV~f~~e~~i~~~i~~~l~~~l~~~~ 362 (367)
T 3h4l_A 323 PMSLIDVNVTPDKRVILLHNERAVIDIFKTTLSDYYNRQE 362 (367)
T ss_dssp CGGGEECCCSSSTTCCEETTHHHHHHHHHHHHHHHHHHHH
T ss_pred CHHHCCCEECCCCCEEEECCHHHHHHHHHHHHHHHHHHCC
T ss_conf 7587463068872889966988999999999999986333