HHsearch results for GI: 254780399 and protein with PDBid: 3kdg_A
>3kdg_A DNA mismatch repair protein MUTL; endonuclease, DNA damage, DNA repair, hydrolase; HET: DNA; 2.00A {Bacillus subtilis} PDB: 3gab_A* 3kdk_A*
Probab=100.00 E-value=0 Score=400.14 Aligned_cols=192 Identities=30% Similarity=0.560 Sum_probs=183.6
Q ss_pred HHHCCCCEEEEECCCCCEEECCCCEEECCHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHH
Q ss_conf 11005721131045510000258635400589989999999852210388421111222234678347777999899998
Q gi|254780399|r 402 THYQLGIACAQIHQNYIISQTTDGLVIVDQHAAHERLIFEKMRQDFNSTKITSQTLLTPEIIDLLEGECALIMEHDEDLH 481 (594)
Q Consensus 402 ~~~~~~~~igQ~~~~yIl~~~~~gL~iIDQHAAhERI~yE~l~~~~~~~~~~~Q~Ll~P~~i~Ls~~e~~~l~~~~~~l~ 481 (594)
..+|.+++|||++++|||++.++||++||||||||||+||+|++.+.+....+|+|++|+.++|++.|...+.++++.|+
T Consensus 4 ~~~p~~~~igQ~~~~YIl~~~~~~L~iIDQHaAhERI~yE~l~~~~~~~~~~~Q~Ll~P~~l~l~~~e~~~l~~~~~~L~ 83 (197)
T 3kdg_A 4 DRVPIMYPIGQMHGTYILAQNENGLYIIDQHAAQERIKYEYFREKVGEVEPEVQEMIVPLTFHYSTNEALIIEQHKQELE 83 (197)
T ss_dssp CCCCCCEEEEEETTTEEEEEETTEEEEEEHHHHHHHHHHHHHHHHHHCSSCCEEEEEEEEEEECCTTHHHHHHHTHHHHH
T ss_pred CCCCCCCCHHHCCCEEEEEEECCCEEEEEHHHHHHHHHHHHHHHHHHCCCCCCEECCCCCCCCCCHHHHHHHHHHHHHHH
T ss_conf 65888668101768889998189789987799899999999999980588752212567556789899988999999999
Q ss_pred HCCCEEEEECCCEEEEEECCCCCCCCCHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHH
Q ss_conf 66959996079879999526111556789999999999985788664689999999976348666458888989999999
Q gi|254780399|r 482 RLGIKAERFGPNAIAIREIPAILSKKNIPQLLRDIIDEIIDSSTTYTLQDRIENILATMACYGSIRSGRKMQSIEMNRLL 561 (594)
Q Consensus 482 ~~Gf~~e~~g~~~~~i~~iP~~l~~~~~~~~l~dll~~l~~~~~~~~~~~~~~~~l~s~ACr~AIk~gd~L~~~e~~~Li 561 (594)
+|||+++.||++++.|+++|.++...+...++.++++++.+.+. ...++..+++++++|||+|||+||+|+.+||+.||
T Consensus 84 ~~Gf~~~~~g~~~~~i~~~P~~l~~~~~~~~i~~~l~~l~~~~~-~~~~~~~~~i~~~~AC~~Aik~g~~Ls~~E~~~Li 162 (197)
T 3kdg_A 84 SVGVFLESFGSNSYIVRCHPAWFPKGEEAELIEEIIQQVLDSKN-IDIKKLREEAAIMMSCKGSIKANRHLRNDEIKALL 162 (197)
T ss_dssp HTTCCCEECSTTEEEEEEEETTSCTTCHHHHHHHHHHHHHHHSS-CCHHHHHHHHHHHHHHCC----CCCCCHHHHHHHH
T ss_pred HCCCEEEECCCCCEEEEEECCCCCCCHHHHHHHHHHHHHHHCCC-CCHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHH
T ss_conf 75957885288612577404446752088899999999984589-75589999999999988860188989999999999
Q ss_pred HHHHHCCCCCCCCCCCEEEEEECHHHHHHHCCC
Q ss_conf 999818888788788727998388899764187
Q gi|254780399|r 562 REMEKNPNSSQCNHGRPTFIKLKLSDIEKLFGR 594 (594)
Q Consensus 562 ~~L~~c~~P~~CpHGRPt~~~l~~~el~k~F~R 594 (594)
++|+.|++||+|||||||++.|+.+||+|+|+|
T Consensus 163 ~~L~~c~~P~~CPhGRP~~~~l~~~el~k~F~R 195 (197)
T 3kdg_A 163 DDLRSTSDPFTCPHGRPIIIHHSTYEMEKMFKR 195 (197)
T ss_dssp HHHHHSSCTTBCTTSCBCEEEEEHHHHHHHHCS
T ss_pred HHHHHCCCCCCCCCCCCEEEECCHHHHHHHHCC
T ss_conf 999828998959799948899589999987286