HHsearch results for GI: 254780399 and protein with PDBid: 3na3_A
>3na3_A DNA mismatch repair protein MLH1; MUTL protein homolog 1, DNA damag repair, structural genomics consortium, SGC, protein bindin; HET: DNA ATP; 2.50A {Homo sapiens}
Probab=100.00 E-value=0 Score=704.85 Aligned_cols=327 Identities=33% Similarity=0.550 Sum_probs=307.2
Q ss_pred CCCCCCHHHHHHHCCCCCCCCHHHHHHHHHHHHHHCCCCEEEEEEECCCEEEEEEEECCCCCCHHHHHHHHCCCCCCCCH
Q ss_conf 67458889999852687226978999999987772699679999980984399999888998898999875024665631
Q gi|254780399|r 2 KIRKLSEKIINQIAAGEIIERPSIAIKELIENSLDAESSRVETVIAGGGKSFFQITDNGFGMTSEEIPMAVQRHCTSKIS 81 (594)
Q Consensus 2 ~I~~L~~~~~~~Iaagevi~~~~svVkELveNSlDAgAt~I~v~i~~~g~~~i~V~DnG~Gi~~~dl~~~~~rh~TSKi~ 81 (594)
+||+||++++++|||||||++|++|||||||||||||||+|.|.|+++|+.+|+|.|||+||+++||.+++.||||||+.
T Consensus 8 ~I~~L~~~~~~~i~s~~vi~~~~s~vkELieNsiDA~At~I~i~i~~~g~~~I~V~DnG~Gi~~~dl~~~~~~~~tSK~~ 87 (348)
T 3na3_A 8 VIRRLDETVVNRIAAGEVIQRPANAIKEMIENCLDAKSTSIQVIVKEGGLKLIQIQDNGTGIRKEDLDIVCERFTTSKLQ 87 (348)
T ss_dssp CCCCCCHHHHHHHHHHHHCCSHHHHHHHHHHHHHHTTCSEEEEEEEGGGTSEEEEEECSCCCCGGGGGTTTSTTCCSSCC
T ss_pred CCEECCHHHHHHCCCCCEECCHHHHHHHHHHHHHCCCCCEEEEEEECCCEEEEEEEECCCCCCHHHHHHHHHCCCCCCCC
T ss_conf 16658989997718977655889999999865544899889999998987899999899888989999997524576778
Q ss_pred --HHHHHCCCCCCCHHHHHHHHHHEEEEEEEECCCCCCCEEEEECCCCC-CCCCCCCCCCCCEEEEEHHHHHHHHHHHCC
Q ss_conf --24411214884048999876202489998048986301551101000-002110125675788521012112543103
Q gi|254780399|r 82 --DDFSNIHTFGFRGEALPSIGAVSHLTLMSRPPQNNTGAQIAISGEKI-SSVRPVAMNPGTIVEVRDLFFTIPARLNFL 158 (594)
Q Consensus 82 --~dl~~i~t~GFRGEAL~sIa~vs~l~i~s~~~~~~~~~~~~~~~g~~-~~~~~~~~~~GT~V~V~~LF~N~PvRrkfl 158 (594)
+||.++.|||||||||+||+++|+++|+||+.+++.||++.+++|.. ....+++++.||+|+|+|||||+||||||+
T Consensus 88 ~~~dl~~~~t~GfRGeAL~sI~~~s~~~I~Sr~~~~~~~~~~~~~~~~~~~~~~~~~~~~GTtV~V~nLF~n~PvRrk~l 167 (348)
T 3na3_A 88 SFEDLASISTYGFRGEALASISHVAHVTITTKTADGKCAYRASYSDGKLKAPPKPCAGNQGTQITVEDLFYNIATRRKAL 167 (348)
T ss_dssp CC---------CCTTCHHHHHHHSSEEEEEEECTTCSSEEEEEEETTEESSCCEEECCCSEEEEEEESTTTTCHHHHHTS
T ss_pred CHHHHHHCCCCCCCHHHHHHHHHHCCEEEEEECCCCCCCCEEEEECCCCEEECCCCCCCCCCEEEECCCCCCCCHHHHHC
T ss_conf 75542210266632899999985177499961256764617998068623404423467765798700226752555312
Q ss_pred CCHHHHHHHHHHHHHHHHHCCCCCEEEEEECCCCEEEEECCCCCHHHHHHHHHHHHHHHHHHHHHCCCCC--EEEEEEEE
Q ss_conf 4536899999999999873189974999987983079971788104899999732166654310022442--03656666
Q gi|254780399|r 159 KSEQVETNLITDVIRRMAIAYPKVSFTFSTIKSNRYKMNFQSTNGNFPERISQVIGEDFINNAVELNEKS--NEITLQGY 236 (594)
Q Consensus 159 ks~~~e~~~I~~~v~~~aL~~P~V~f~l~~~~~~~~~l~~~~~~~~l~~ri~~i~G~~~~~~l~~i~~~~--~~~~i~G~ 236 (594)
+++++|+.+|.+++++|||+||+|+|+|.++++....+... ...++.+++..+||..+.+++.+++... ..+++.||
T Consensus 168 k~~~~e~~~i~~~i~~~AL~~p~I~F~l~~~gk~~~~~~~~-~~~~~~~~i~~v~G~~~~~~~~~~~~~~~~~~~~i~g~ 246 (348)
T 3na3_A 168 KNPSEEYGKILEVVGRYSVHNAGISFSVKKQGETVADVRTL-PNASTVDNIRSIFGNAVSRELIEIGCEDKTLAFKMNGY 246 (348)
T ss_dssp CCHHHHHHHHHHHHHHHHHHCTTCEEEEEETTCSSCSEECC-TTCCHHHHHHHHHCHHHHTTEEEEEEEEGGGTEEEEEE
T ss_pred CCCHHHHHHHHHHHHHHHHCCCCCEEEEEECCEEEEEEECC-CCCCHHHHHHHHHCHHHHHHCCCCCCCCCCCCEEEECC
T ss_conf 58189999999999998625999649999999999998659-99789999998747365651034333346653123034
Q ss_pred ECCCCCCCCCCHHHHHHHCCCHHHCHHHHHHHHHHHHHHCCCCCCEEEEEEEEEEHHHHCCCCCCHHHHHHHCCHHHHHH
Q ss_conf 21611033232066775152100075888999987554427999807999999606571247571111255359799999
Q gi|254780399|r 237 TGIPTFNRGNANQFYVFINGRTVQDKFILSTIRTAYAETIPLGRYPVVVLLLEIDPRQVDVNVHPAKSYIRFRNPTIIRN 316 (594)
Q Consensus 237 is~P~~~r~~~~~q~ifVNgR~V~~~~l~~AI~~aY~~~l~~g~~P~~vL~i~i~p~~vDVNVHP~K~eVrf~de~~i~~ 316 (594)
++.|..+++ ++.||+|||||||+++.+.+||+++|+++++.++||+|+|+|+|||..+||||||+|+||+|+||+.|++
T Consensus 247 is~p~~~~~-~~~q~~fVN~R~V~~~~l~~aI~~~y~~~l~~~~~P~~vL~i~~p~~~iDVNVhP~K~eV~f~~e~~i~~ 325 (348)
T 3na3_A 247 ISNANYSVK-KCIFLLFINHRLVESTSLRKAIETVYAAYLPKNTHPFLYLSLEISPQNVDVNVHPTKHEVHFLHEESILE 325 (348)
T ss_dssp EECSSCCBS-SCEEEEEETTEECCCTTHHHHHHHHHHTTSCTTCBCEEEEEEECC----------------------CTH
T ss_pred CCCCCCCCC-CCCEEEEECCCEECCHHHHHHHHHHHHHHCCCCCCEEEEEEEEECCHHEEEEECCCCCEEEECCHHHHHH
T ss_conf 268654667-7617999918732567999999999997575898629999999471337741478748899669899999
Q ss_pred HHHHHHHHHHHHCC
Q ss_conf 99997898875317
Q gi|254780399|r 317 FIIQSIQKAINKKG 330 (594)
Q Consensus 317 ~i~~~i~~~L~~~~ 330 (594)
+|.++|+++|...+
T Consensus 326 ~i~~~i~~~L~~~~ 339 (348)
T 3na3_A 326 RVQQHIESKLLGSN 339 (348)
T ss_dssp HHHHHHHHHHC---
T ss_pred HHHHHHHHHHHCCC
T ss_conf 99999999985268