HHsearch results for GI: 254780399 and protein with PDBid: 3na3_A

>3na3_A DNA mismatch repair protein MLH1; MUTL protein homolog 1, DNA damag repair, structural genomics consortium, SGC, protein bindin; HET: DNA ATP; 2.50A {Homo sapiens}
Probab=100.00  E-value=0  Score=704.85  Aligned_cols=327  Identities=33%  Similarity=0.550  Sum_probs=307.2

Q ss_pred             CCCCCCHHHHHHHCCCCCCCCHHHHHHHHHHHHHHCCCCEEEEEEECCCEEEEEEEECCCCCCHHHHHHHHCCCCCCCCH
Q ss_conf             67458889999852687226978999999987772699679999980984399999888998898999875024665631
Q gi|254780399|r    2 KIRKLSEKIINQIAAGEIIERPSIAIKELIENSLDAESSRVETVIAGGGKSFFQITDNGFGMTSEEIPMAVQRHCTSKIS   81 (594)
Q Consensus         2 ~I~~L~~~~~~~Iaagevi~~~~svVkELveNSlDAgAt~I~v~i~~~g~~~i~V~DnG~Gi~~~dl~~~~~rh~TSKi~   81 (594)
                      +||+||++++++|||||||++|++|||||||||||||||+|.|.|+++|+.+|+|.|||+||+++||.+++.||||||+.
T Consensus         8 ~I~~L~~~~~~~i~s~~vi~~~~s~vkELieNsiDA~At~I~i~i~~~g~~~I~V~DnG~Gi~~~dl~~~~~~~~tSK~~   87 (348)
T 3na3_A            8 VIRRLDETVVNRIAAGEVIQRPANAIKEMIENCLDAKSTSIQVIVKEGGLKLIQIQDNGTGIRKEDLDIVCERFTTSKLQ   87 (348)
T ss_dssp             CCCCCCHHHHHHHHHHHHCCSHHHHHHHHHHHHHHTTCSEEEEEEEGGGTSEEEEEECSCCCCGGGGGTTTSTTCCSSCC
T ss_pred             CCEECCHHHHHHCCCCCEECCHHHHHHHHHHHHHCCCCCEEEEEEECCCEEEEEEEECCCCCCHHHHHHHHHCCCCCCCC
T ss_conf             16658989997718977655889999999865544899889999998987899999899888989999997524576778


Q ss_pred             --HHHHHCCCCCCCHHHHHHHHHHEEEEEEEECCCCCCCEEEEECCCCC-CCCCCCCCCCCCEEEEEHHHHHHHHHHHCC
Q ss_conf             --24411214884048999876202489998048986301551101000-002110125675788521012112543103
Q gi|254780399|r   82 --DDFSNIHTFGFRGEALPSIGAVSHLTLMSRPPQNNTGAQIAISGEKI-SSVRPVAMNPGTIVEVRDLFFTIPARLNFL  158 (594)
Q Consensus        82 --~dl~~i~t~GFRGEAL~sIa~vs~l~i~s~~~~~~~~~~~~~~~g~~-~~~~~~~~~~GT~V~V~~LF~N~PvRrkfl  158 (594)
                        +||.++.|||||||||+||+++|+++|+||+.+++.||++.+++|.. ....+++++.||+|+|+|||||+||||||+
T Consensus        88 ~~~dl~~~~t~GfRGeAL~sI~~~s~~~I~Sr~~~~~~~~~~~~~~~~~~~~~~~~~~~~GTtV~V~nLF~n~PvRrk~l  167 (348)
T 3na3_A           88 SFEDLASISTYGFRGEALASISHVAHVTITTKTADGKCAYRASYSDGKLKAPPKPCAGNQGTQITVEDLFYNIATRRKAL  167 (348)
T ss_dssp             CC---------CCTTCHHHHHHHSSEEEEEEECTTCSSEEEEEEETTEESSCCEEECCCSEEEEEEESTTTTCHHHHHTS
T ss_pred             CHHHHHHCCCCCCCHHHHHHHHHHCCEEEEEECCCCCCCCEEEEECCCCEEECCCCCCCCCCEEEECCCCCCCCHHHHHC
T ss_conf             75542210266632899999985177499961256764617998068623404423467765798700226752555312


Q ss_pred             CCHHHHHHHHHHHHHHHHHCCCCCEEEEEECCCCEEEEECCCCCHHHHHHHHHHHHHHHHHHHHHCCCCC--EEEEEEEE
Q ss_conf             4536899999999999873189974999987983079971788104899999732166654310022442--03656666
Q gi|254780399|r  159 KSEQVETNLITDVIRRMAIAYPKVSFTFSTIKSNRYKMNFQSTNGNFPERISQVIGEDFINNAVELNEKS--NEITLQGY  236 (594)
Q Consensus       159 ks~~~e~~~I~~~v~~~aL~~P~V~f~l~~~~~~~~~l~~~~~~~~l~~ri~~i~G~~~~~~l~~i~~~~--~~~~i~G~  236 (594)
                      +++++|+.+|.+++++|||+||+|+|+|.++++....+... ...++.+++..+||..+.+++.+++...  ..+++.||
T Consensus       168 k~~~~e~~~i~~~i~~~AL~~p~I~F~l~~~gk~~~~~~~~-~~~~~~~~i~~v~G~~~~~~~~~~~~~~~~~~~~i~g~  246 (348)
T 3na3_A          168 KNPSEEYGKILEVVGRYSVHNAGISFSVKKQGETVADVRTL-PNASTVDNIRSIFGNAVSRELIEIGCEDKTLAFKMNGY  246 (348)
T ss_dssp             CCHHHHHHHHHHHHHHHHHHCTTCEEEEEETTCSSCSEECC-TTCCHHHHHHHHHCHHHHTTEEEEEEEEGGGTEEEEEE
T ss_pred             CCCHHHHHHHHHHHHHHHHCCCCCEEEEEECCEEEEEEECC-CCCCHHHHHHHHHCHHHHHHCCCCCCCCCCCCEEEECC
T ss_conf             58189999999999998625999649999999999998659-99789999998747365651034333346653123034


Q ss_pred             ECCCCCCCCCCHHHHHHHCCCHHHCHHHHHHHHHHHHHHCCCCCCEEEEEEEEEEHHHHCCCCCCHHHHHHHCCHHHHHH
Q ss_conf             21611033232066775152100075888999987554427999807999999606571247571111255359799999
Q gi|254780399|r  237 TGIPTFNRGNANQFYVFINGRTVQDKFILSTIRTAYAETIPLGRYPVVVLLLEIDPRQVDVNVHPAKSYIRFRNPTIIRN  316 (594)
Q Consensus       237 is~P~~~r~~~~~q~ifVNgR~V~~~~l~~AI~~aY~~~l~~g~~P~~vL~i~i~p~~vDVNVHP~K~eVrf~de~~i~~  316 (594)
                      ++.|..+++ ++.||+|||||||+++.+.+||+++|+++++.++||+|+|+|+|||..+||||||+|+||+|+||+.|++
T Consensus       247 is~p~~~~~-~~~q~~fVN~R~V~~~~l~~aI~~~y~~~l~~~~~P~~vL~i~~p~~~iDVNVhP~K~eV~f~~e~~i~~  325 (348)
T 3na3_A          247 ISNANYSVK-KCIFLLFINHRLVESTSLRKAIETVYAAYLPKNTHPFLYLSLEISPQNVDVNVHPTKHEVHFLHEESILE  325 (348)
T ss_dssp             EECSSCCBS-SCEEEEEETTEECCCTTHHHHHHHHHHTTSCTTCBCEEEEEEECC----------------------CTH
T ss_pred             CCCCCCCCC-CCCEEEEECCCEECCHHHHHHHHHHHHHHCCCCCCEEEEEEEEECCHHEEEEECCCCCEEEECCHHHHHH
T ss_conf             268654667-7617999918732567999999999997575898629999999471337741478748899669899999


Q ss_pred             HHHHHHHHHHHHCC
Q ss_conf             99997898875317
Q gi|254780399|r  317 FIIQSIQKAINKKG  330 (594)
Q Consensus       317 ~i~~~i~~~L~~~~  330 (594)
                      +|.++|+++|...+
T Consensus       326 ~i~~~i~~~L~~~~  339 (348)
T 3na3_A          326 RVQQHIESKLLGSN  339 (348)
T ss_dssp             HHHHHHHHHHC---
T ss_pred             HHHHHHHHHHHCCC
T ss_conf             99999999985268