Query gi|254780399|ref|YP_003064812.1| DNA mismatch repair protein [Candidatus Liberibacter asiaticus str. psy62]
Match_columns 594
No_of_seqs 177 out of 2292
Neff 8.4
Searched_HMMs 23785
Date Mon May 30 11:25:43 2011
Command /home/congqian_1/programs/hhpred/hhsearch -i 254780399.hhm -d /home/congqian_1/database/pdb/pdb70.hhm
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1b63_A MUTL; DNA mismatch repa 100.0 0 0 717.6 27.7 327 1-327 3-333 (333)
2 3h4l_A DNA mismatch repair pro 100.0 0 0 710.5 21.3 329 1-330 4-362 (367)
3 3na3_A DNA mismatch repair pro 100.0 0 0 704.8 22.5 327 2-330 8-339 (348)
4 1h7s_A PMS1 protein homolog 2; 100.0 0 0 669.5 23.9 325 2-327 14-364 (365)
5 3kdg_A DNA mismatch repair pro 100.0 0 0 400.1 18.7 192 402-594 4-195 (197)
6 1x9z_A DNA mismatch repair pro 100.0 5.1E-36 2.1E-40 277.0 15.2 175 405-593 7-186 (188)
7 2zbk_B Type 2 DNA topoisomeras 99.9 3.2E-26 1.3E-30 206.6 12.8 176 19-196 28-215 (530)
8 1mu5_A Type II DNA topoisomera 99.9 1.7E-21 7.2E-26 172.6 15.2 173 22-196 32-216 (471)
9 2q2e_B Type 2 DNA topoisomeras 99.8 3.6E-20 1.5E-24 163.1 10.5 164 21-194 36-218 (621)
10 3cwv_A DNA gyrase, B subunit, 99.4 3.4E-10 1.4E-14 91.3 21.0 280 23-328 31-346 (369)
11 2ior_A Chaperone protein HTPG; 99.1 9E-10 3.8E-14 88.3 11.7 145 20-177 45-222 (235)
12 2ioq_A Chaperone protein HTPG; 99.1 5.2E-09 2.2E-13 82.9 13.2 254 20-300 25-335 (624)
13 1yc1_A HSP 86, heat shock prot 99.0 6.1E-09 2.6E-13 82.3 12.8 143 19-177 65-240 (264)
14 2wer_A ATP-dependent molecular 99.0 3.1E-09 1.3E-13 84.5 11.1 141 20-177 24-199 (220)
15 1y4s_A Chaperone protein HTPG; 99.0 4.9E-09 2.1E-13 83.0 11.8 145 20-177 25-202 (559)
16 2gqp_A Endoplasmin; GRP94, HSP 99.0 4.9E-09 2.1E-13 83.0 10.6 142 19-177 29-209 (236)
17 1ei1_A DNA gyrase B, GYRB; ATP 99.0 2E-07 8.2E-12 71.5 18.3 225 20-260 32-275 (391)
18 1zxm_A TOPO IIA ATPase, DNA to 99.0 4.3E-08 1.8E-12 76.3 15.0 161 20-186 50-229 (400)
19 2cg9_A ATP-dependent molecular 98.9 8.2E-09 3.4E-13 81.4 10.5 142 19-177 23-199 (677)
20 1qy5_A Endoplasmin; GRP94, NEC 98.9 4.8E-09 2E-13 83.1 8.8 144 20-180 26-210 (269)
21 3peh_A Endoplasmin homolog; st 98.9 2.5E-08 1E-12 77.9 11.0 141 20-177 44-220 (281)
22 1kij_A DNA gyrase subunit B; t 98.9 5.1E-07 2.2E-11 68.5 17.7 223 20-259 30-273 (390)
23 3ied_A Heat shock protein; HSP 98.8 3.1E-08 1.3E-12 77.2 10.5 140 20-177 45-261 (272)
24 3fv5_A DNA topoisomerase 4 sub 98.8 1.3E-07 5.6E-12 72.7 13.5 161 22-194 17-196 (201)
25 1s16_A Topoisomerase IV subuni 98.8 5.1E-07 2.1E-11 68.5 15.1 177 22-212 31-226 (390)
26 2o1u_A Endoplasmin; GRP94, HSP 98.8 7.4E-08 3.1E-12 74.6 10.6 272 21-328 44-386 (666)
27 3g75_A DNA gyrase subunit B; a 98.7 4E-07 1.7E-11 69.3 12.3 145 22-191 20-172 (184)
28 1uyl_A HSP 86, heat shock prot 98.7 1.9E-07 8E-12 71.6 10.5 142 19-177 37-212 (236)
29 3g7e_A DNA gyrase subunit B; i 98.6 6.5E-07 2.7E-11 67.8 12.4 163 20-193 19-198 (203)
30 1pvg_A DNA topoisomerase II; G 98.6 2.2E-06 9.2E-11 64.0 14.0 128 20-154 62-210 (418)
31 2e0a_A Pyruvate dehydrogenase 98.3 9.6E-06 4E-10 59.4 11.1 25 479-503 323-350 (394)
32 3d36_A Sporulation kinase B; G 98.2 4.5E-06 1.9E-10 61.7 8.1 58 22-79 123-183 (244)
33 2btz_A Pyruvate dehydrogenase 98.2 4.3E-06 1.8E-10 61.9 7.7 24 54-77 273-296 (394)
34 1gkz_A [3-methyl-2-oxobutanoat 98.2 1.1E-06 4.8E-11 66.0 4.4 16 312-327 241-256 (388)
35 2q8g_A [pyruvate dehydrogenase 98.1 8.2E-06 3.5E-10 59.9 7.3 26 478-503 335-363 (407)
36 3a0r_A Sensor protein; four he 98.1 3.1E-06 1.3E-10 62.9 5.0 57 258-327 202-258 (349)
37 1ysr_A Sensor-type histidine k 98.0 2.1E-05 8.8E-10 56.9 7.6 58 22-79 46-105 (150)
38 3a0y_A Sensor protein; ATP-LID 97.9 1.6E-05 6.9E-10 57.7 5.9 58 22-79 47-107 (152)
39 1bxd_A ENVZ(290-450), protein 97.9 1.5E-05 6.3E-10 58.0 4.9 58 22-79 47-105 (161)
40 1id0_A PHOQ histidine kinase; 97.8 4E-05 1.7E-09 54.9 6.0 57 22-78 44-101 (152)
41 1th8_A Anti-sigma F factor; SP 97.7 0.00036 1.5E-08 48.1 9.5 91 20-123 37-134 (145)
42 2c2a_A Sensor histidine kinase 97.6 0.00013 5.5E-09 51.2 6.6 58 22-79 138-201 (258)
43 3jz3_A Sensor protein QSEC; he 97.5 9.1E-05 3.8E-09 52.3 4.6 54 23-79 118-173 (222)
44 1r62_A Nitrogen regulation pro 97.5 3.1E-05 1.3E-09 55.7 1.9 58 22-79 48-119 (160)
45 1ixm_A SPO0B, protein (sporula 97.2 0.0001 4.4E-09 51.9 2.4 56 22-77 112-171 (192)
46 3ehg_A Sensor kinase (YOCF pro 97.2 0.00067 2.8E-08 46.1 6.3 44 23-66 41-86 (128)
47 3ehh_A Sensor kinase (YOCF pro 96.4 0.01 4.2E-07 37.7 7.1 45 23-67 131-177 (218)
48 3ke6_A Protein RV1364C/MT1410; 95.6 0.028 1.2E-06 34.5 6.3 14 53-66 66-80 (399)
49 2x4h_A Hypothetical protein SS 94.8 0.016 6.8E-07 36.2 3.1 96 461-579 39-137 (139)
50 1b3q_A Protein (chemotaxis pro 94.2 0.2 8.3E-06 28.4 7.4 54 22-75 106-174 (379)
51 1fx7_A Iron-dependent represso 94.1 0.037 1.6E-06 33.6 3.6 37 540-579 96-132 (230)
52 2qq9_A Diphtheria toxin repres 93.6 0.039 1.6E-06 33.4 3.0 97 462-579 33-132 (226)
53 3hrs_A Metalloregulator SCAR; 91.8 0.085 3.6E-06 31.0 2.7 99 461-580 28-129 (214)
54 1to6_A Glycerate kinase; glyce 56.8 3.4 0.00014 19.5 1.4 63 25-103 110-172 (371)
55 1r5l_A Alpha-TTP, protein (alp 54.1 9.1 0.00038 16.4 5.9 24 264-287 76-102 (262)
56 3cwc_A Putative glycerate kina 53.5 3.2 0.00014 19.7 0.8 42 26-76 116-157 (383)
57 3b7n_A Uncharacterized protein 52.1 9.8 0.00041 16.2 5.9 19 183-201 121-139 (320)
58 2h09_A Transcriptional regulat 50.2 8.4 0.00035 16.6 2.5 118 432-577 30-154 (155)
59 2j9w_A VPS28, VPS28-PROV prote 49.8 11 0.00045 15.9 6.6 57 507-566 32-91 (102)
60 1djx_A PLC-D1, phosphoinositid 42.4 14 0.00057 15.1 3.3 19 56-74 20-39 (624)
61 2zkm_X 1-phosphatidylinositol- 32.9 15 0.00062 14.9 1.5 12 278-290 398-409 (799)
62 3mud_A DNA repair protein XRCC 31.7 20 0.00083 14.0 2.2 35 507-543 120-154 (175)
63 2bp3_A Filamin A; structural p 31.3 20 0.00084 13.9 4.0 28 35-62 32-59 (97)
64 1vpb_A Putative modulator of D 28.2 22 0.00094 13.6 4.7 36 23-58 18-53 (451)
65 2itb_A TRNA-(MS(2)IO(6)A)-hydr 23.4 27 0.0011 13.0 2.3 83 425-514 29-114 (206)
66 2j3s_A Filamin-A; acetylation, 22.4 28 0.0012 12.8 4.1 29 35-63 32-60 (288)
67 1u84_A Hypothetical protein; s 22.2 29 0.0012 12.8 4.0 59 509-574 30-88 (90)
68 2w0p_A Filamin-A; alternative 21.3 30 0.0013 12.7 3.9 26 36-61 30-55 (94)
69 2j9u_A VPS28, vacuolar protein 20.7 31 0.0013 12.6 5.5 56 508-566 30-86 (96)
No 1
>1b63_A MUTL; DNA mismatch repair, ATPase; HET: ANP; 1.90A {Escherichia coli K12} SCOP: d.14.1.3 d.122.1.2 PDB: 1nhh_A* 1nhi_A* 1bkn_A 1nhj_A* 1b62_A*
Probab=100.00 E-value=0 Score=717.58 Aligned_cols=327 Identities=39% Similarity=0.649 Sum_probs=312.0
Q ss_pred CCCCCCCHHHHHHHCCCCCCCCHHHHHHHHHHHHHHCCCCEEEEEEECCCEEEEEEEECCCCCCHHHHHHHHCCCCCCCC
Q ss_conf 96745888999985268722697899999998777269967999998098439999988899889899987502466563
Q gi|254780399|r 1 MKIRKLSEKIINQIAAGEIIERPSIAIKELIENSLDAESSRVETVIAGGGKSFFQITDNGFGMTSEEIPMAVQRHCTSKI 80 (594)
Q Consensus 1 m~I~~L~~~~~~~Iaagevi~~~~svVkELveNSlDAgAt~I~v~i~~~g~~~i~V~DnG~Gi~~~dl~~~~~rh~TSKi 80 (594)
|+|++||++++++|||||||++|++|||||||||||||||+|.|.|+++|+++|+|.||||||+++||+++|+||+|||+
T Consensus 3 m~I~~L~~~~~~~i~s~~vI~~~~~~vkELveNSiDA~At~I~I~v~~~g~~~I~V~DnG~GI~~~dl~~~~~r~~TSK~ 82 (333)
T 1b63_A 3 MPIQVLPPQLANQIAAGEVVERPASVVKELVENSLDAGATRIDIDIERGGAKLIRIRDNGCGIKKDELALALARHATSKI 82 (333)
T ss_dssp SCCCCCCHHHHHHHHHHHHCSSHHHHHHHHHHHHHHTTCSEEEEEEEGGGTSEEEEEECSCCCCGGGHHHHHSTTCCSSC
T ss_pred CCCEECCHHHHHHCCCCCEECCHHHHHHHHHHHHCCCCCCEEEEEEECCCEEEEEEEECCCCCCHHHHHHHHHHHCCCCC
T ss_conf 96357999999870886765478999999986302789898999998797659999989967687688887664105778
Q ss_pred H--HHHHHCCCCCCCHHHHHHHHHHEEEEEEEECCCCCCCEEEEECCCC-CCCCCCCCCCCCCEEEEEHHHHHHHHHHHC
Q ss_conf 1--2441121488404899987620248999804898630155110100-000211012567578852101211254310
Q gi|254780399|r 81 S--DDFSNIHTFGFRGEALPSIGAVSHLTLMSRPPQNNTGAQIAISGEK-ISSVRPVAMNPGTIVEVRDLFFTIPARLNF 157 (594)
Q Consensus 81 ~--~dl~~i~t~GFRGEAL~sIa~vs~l~i~s~~~~~~~~~~~~~~~g~-~~~~~~~~~~~GT~V~V~~LF~N~PvRrkf 157 (594)
. +|+.++.|||||||||+|||+||+++|+||+++++.||++.++++. ....+|++++.||||+|+|||||+||||||
T Consensus 83 ~~~~dl~~~~t~GFRGEAL~Si~~vs~l~I~sr~~~~~~~~~~~~~~~~~~~~~~~~~~~~GTtV~V~~LF~n~PvRrk~ 162 (333)
T 1b63_A 83 ASLDDLEAIISLGFRGEALASISSVSRLTLTSRTAEQQEAWQAYAEGRDMNVTVKPAAHPVGTTLEVLDLFYNTPARRKF 162 (333)
T ss_dssp CSHHHHHTCCSSCCSSCHHHHHHTTSEEEEEEECTTCSSEEEEEEETTTTEEEEEEECCCSEEEEEEESTTTTCHHHHHT
T ss_pred CCHHHHHHHHHCCCCHHHHHHHHHHCCCEEEEECCCCCCEEEEEEECCCCCCCEEECCCCCCCEEEECHHHCCCHHHHHH
T ss_conf 99788556652275507999999850854433428988449999954776444025368999689960432738577752
Q ss_pred CCCHHHHHHHHHHHHHHHHHCCCCCEEEEEECCCCEEEEECCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEEEEEE
Q ss_conf 34536899999999999873189974999987983079971788104899999732166654310022442036566662
Q gi|254780399|r 158 LKSEQVETNLITDVIRRMAIAYPKVSFTFSTIKSNRYKMNFQSTNGNFPERISQVIGEDFINNAVELNEKSNEITLQGYT 237 (594)
Q Consensus 158 lks~~~e~~~I~~~v~~~aL~~P~V~f~l~~~~~~~~~l~~~~~~~~l~~ri~~i~G~~~~~~l~~i~~~~~~~~i~G~i 237 (594)
++++..|+.++.+++++|||+||+|+|++.++++....+...++..++..++..+||..+..++.++..+...++++||+
T Consensus 163 l~~~~~e~~~i~~~l~~~Al~~p~v~f~l~~~~k~~~~~~~~~~~~~~~~~i~~v~g~~~~~~~~~~~~~~~~~~i~G~i 242 (333)
T 1b63_A 163 LRTEKTEFNHIDEIIRRIALARFDVTINLSHNGKIVRQYRAVPEGGQKERRLGAICGTAFLEQALAIEWQHGDLTLRGWV 242 (333)
T ss_dssp CCCHHHHHHHHHHHHHHHHHHCTTCEEEEEETTEEEEEECCCCTTCCTHHHHHHHHCHHHHHHEEEEEEEETTEEEEEEE
T ss_pred CCCHHHHHHHHHHHHHHHCCCCCCEEEEEEECCCCEEEEECCCCCCCHHHHHHHHCCHHHHHHEEEEEECCCCCEEEEEE
T ss_conf 58848889999999987332688479999978831156633689852887776531204333124432002552253354
Q ss_pred CCCCCCCCC-CHHHHHHHCCCHHHCHHHHHHHHHHHHHHCCCCCCEEEEEEEEEEHHHHCCCCCCHHHHHHHCCHHHHHH
Q ss_conf 161103323-2066775152100075888999987554427999807999999606571247571111255359799999
Q gi|254780399|r 238 GIPTFNRGN-ANQFYVFINGRTVQDKFILSTIRTAYAETIPLGRYPVVVLLLEIDPRQVDVNVHPAKSYIRFRNPTIIRN 316 (594)
Q Consensus 238 s~P~~~r~~-~~~q~ifVNgR~V~~~~l~~AI~~aY~~~l~~g~~P~~vL~i~i~p~~vDVNVHP~K~eVrf~de~~i~~ 316 (594)
+.|..++.. .+.||+|||||||.++.+.+||+++|++.++.++||+|+|+|+|||+.|||||||+|+||+|+||+.|.+
T Consensus 243 s~p~~~~~~~~~~q~~fVN~R~v~~~~l~~aI~~~y~~~~~~~~~P~~vL~i~~p~~~iDvNvhP~K~eV~f~~e~~I~~ 322 (333)
T 1b63_A 243 ADPNHTTPALAEIQYCYVNGRMMRDRLINHAIRQACEDKLGADQQPAFVLYLEIDPHQVDVNVHPAKHEVRFHQSRLVHD 322 (333)
T ss_dssp ECGGGCCTTGGGCEEEEETTEECCCHHHHHHHHHHHHHHSSSCCCCCEEEEEECCGGGEECTTSTTCCCCEETTHHHHHH
T ss_pred CCCCCCCCCCCCEEEEEECCCCCCCHHHHHHHHHHHHHHCCCCCCEEEEEEEEECCHHEEEEECCCCCEEEECCHHHHHH
T ss_conf 38642324346536999668511468999999999885465888808999999371426442178759899788889999
Q ss_pred HHHHHHHHHHH
Q ss_conf 99997898875
Q gi|254780399|r 317 FIIQSIQKAIN 327 (594)
Q Consensus 317 ~i~~~i~~~L~ 327 (594)
+|.++|.++|.
T Consensus 323 ~i~~~i~~~L~ 333 (333)
T 1b63_A 323 FIYQGVLSVLQ 333 (333)
T ss_dssp HHHHHHHHHTC
T ss_pred HHHHHHHHHHC
T ss_conf 99999999859
No 2
>3h4l_A DNA mismatch repair protein PMS1; ATP binding, DNA repair, DNA damage, nucleus, phosphop DNA binding protein, protein binding; HET: DNA ANP; 2.50A {Saccharomyces cerevisiae}
Probab=100.00 E-value=0 Score=710.53 Aligned_cols=329 Identities=25% Similarity=0.416 Sum_probs=304.0
Q ss_pred CCCCCCCHHHHHHHCCCCCCCCHHHHHHHHHHHHHHCCCCEEEEEEECCCEEEEEEEECCCCCCHHHHHHHHCCCCCCCC
Q ss_conf 96745888999985268722697899999998777269967999998098439999988899889899987502466563
Q gi|254780399|r 1 MKIRKLSEKIINQIAAGEIIERPSIAIKELIENSLDAESSRVETVIAGGGKSFFQITDNGFGMTSEEIPMAVQRHCTSKI 80 (594)
Q Consensus 1 m~I~~L~~~~~~~Iaagevi~~~~svVkELveNSlDAgAt~I~v~i~~~g~~~i~V~DnG~Gi~~~dl~~~~~rh~TSKi 80 (594)
.+|++||++++++|||||||+||++|||||||||||||||+|.|.++++|+++|+|.|||+||+++||++++.||+||||
T Consensus 4 ~~I~~L~~~~i~~I~agevI~~p~svvkELveNsiDA~At~I~v~i~~~g~~~i~V~DnG~Gi~~~d~~~~~~r~~TSK~ 83 (367)
T 3h4l_A 4 TQIHQINDIDVHRITSGQVITDLTTAVKELVDNSIDANANQIEIIFKDYGLESIECSDNGDGIDPSNYEFLALKHYTSKI 83 (367)
T ss_dssp ---------CTHHHHHHHHCCSHHHHHHHHHHHHHHTTCSEEEEEEETTTTSEEEEEECSCCCCGGGTTTTTCCEEC---
T ss_pred CCCEECCHHHHHHHCCCCEECCHHHHHHHHHHHHHCCCCCEEEEEEECCCEEEEEEEECCCCCCHHHHHHHHHHCCCCCC
T ss_conf 30201899999880896644688999999997776489598999998798469999989998897899876542058755
Q ss_pred H--HHHHHCCCCCCCHHHHHHHHHHEEEEEEEECCCCCCCEEEEECCCCCCCCCCCCCCCCCEEEEEHHHHHHHHHHH-C
Q ss_conf 1--244112148840489998762024899980489863015511010000021101256757885210121125431-0
Q gi|254780399|r 81 S--DDFSNIHTFGFRGEALPSIGAVSHLTLMSRPPQNNTGAQIAISGEKISSVRPVAMNPGTIVEVRDLFFTIPARLN-F 157 (594)
Q Consensus 81 ~--~dl~~i~t~GFRGEAL~sIa~vs~l~i~s~~~~~~~~~~~~~~~g~~~~~~~~~~~~GT~V~V~~LF~N~PvRrk-f 157 (594)
+ +||.++.|||||||||+|||+||+++|+||+.++..++.....+|.+...+|++++.||+|+|+|||||+||||| |
T Consensus 84 ~~~~dl~~~~t~GfRGeAL~sI~~vs~l~I~S~~~~~~~~~~~~~~~g~~~~~~~~~~~~GTtV~V~dLF~n~PvRrk~~ 163 (367)
T 3h4l_A 84 AKFQDVAKVQTLGFRGEALSSLCGIAKLSVITTTSPPKADKLEYDMVGHITSKTTTSRNKGTTVLVSQLFHNLPVRQKEF 163 (367)
T ss_dssp ------CCCCEEEETTHHHHHHHHSSEEEEEEESSTTCEEEEEECTTCCEEEEEEECCSSEEEEEEESTTTTCHHHHHHH
T ss_pred CCCCCCCCCCCCCCCHHHHHHHHHHCCEEEEEEECCCCCCEEEEEECCCCCCCCCCCCCCCCCEEEECCCCCCHHHHHHH
T ss_conf 53223311246664407899887525647998505876334999833752223543456666346320305876778876
Q ss_pred CCCHHHHHHHHHHHHHHHHHCCCCCEEEEEECCCC--EEEEECCCCCHHHHHHHHHHHHHHHHHHHHHCCCC--------
Q ss_conf 34536899999999999873189974999987983--07997178810489999973216665431002244--------
Q gi|254780399|r 158 LKSEQVETNLITDVIRRMAIAYPKVSFTFSTIKSN--RYKMNFQSTNGNFPERISQVIGEDFINNAVELNEK-------- 227 (594)
Q Consensus 158 lks~~~e~~~I~~~v~~~aL~~P~V~f~l~~~~~~--~~~l~~~~~~~~l~~ri~~i~G~~~~~~l~~i~~~-------- 227 (594)
+|+.++|+.+|.+++++|||+||+|+|+|.+...+ ......+++++++.+++.++||.+..+.+.+++..
T Consensus 164 ~k~~~~e~~~I~~~v~~yAL~~p~V~F~l~~~~~~~~~~~~l~~~~~~~~~~~i~~v~G~~~~~~l~~~~~~~~~~~~~~ 243 (367)
T 3h4l_A 164 SKTFKRQFTKCLTVIQGYAIINAAIKFSVWNITPKGKKNLILSTMRNSSMRKNISSVFGAGGMRGLEEVDLVLDLNPFKN 243 (367)
T ss_dssp HTTHHHHHHHHHHHHHHHHHHCTTCEEEEEEECTTSCEEEEEECCSSCCHHHHHHHHHCTTTTTTEEEEEEEEECGGGCC
T ss_pred HCCCHHHHHHHHHHHHHHHHCCCCEEEEEEEECCCCCEEEEECCCCCCCHHHHHHHHHCHHHHHCCCEEEHHCCCCCHHH
T ss_conf 50102677777889864432479706999863378740365314568589999999869777720402200124551010
Q ss_pred ---------------CEEEEEEEEECCCCC--CCCCCHHHHHHHCCCHHHCHHHHHHHHHHHHHHCCCCCCEEEEEEEEE
Q ss_conf ---------------203656666216110--332320667751521000758889999875544279998079999996
Q gi|254780399|r 228 ---------------SNEITLQGYTGIPTF--NRGNANQFYVFINGRTVQDKFILSTIRTAYAETIPLGRYPVVVLLLEI 290 (594)
Q Consensus 228 ---------------~~~~~i~G~is~P~~--~r~~~~~q~ifVNgR~V~~~~l~~AI~~aY~~~l~~g~~P~~vL~i~i 290 (594)
...++++||++.|+. +|+++++||+|||||||+++.|.+||+++|++ ++.++||+|+|+|+|
T Consensus 244 ~~~~~~~~~~~~~~~~~~~~i~G~is~p~~~~~r~~~~~q~ifVNgR~V~~~~l~~ai~~~y~~-~~~~~~P~~~L~i~~ 322 (367)
T 3h4l_A 244 RMLGKYTDDPDFLDLDYKIRVKGYISQNSFGCGRNSKDRQFIYVNKRPVEYSTLLKCCNEVYKT-FNNVQFPAVFLNLEL 322 (367)
T ss_dssp CCC------------CCEEEEEEEEECCSTTCSBSSSSSEEEEETTEEECCHHHHHHHHHHHHT-TCSSCBCCEEEEEEC
T ss_pred CCCCCCCCCCCCCCCCCCEEEEEEECCCCCCCCCCCCCEEEEEECCEEECCHHHHHHHHHHHHH-CCCCCCCEEEEEEEE
T ss_conf 0122224553222567747999998178301245778538999948782458999999999974-558998189999996
Q ss_pred EHHHHCCCCCCHHHHHHHCCHHHHHHHHHHHHHHHHHHCC
Q ss_conf 0657124757111125535979999999997898875317
Q gi|254780399|r 291 DPRQVDVNVHPAKSYIRFRNPTIIRNFIIQSIQKAINKKG 330 (594)
Q Consensus 291 ~p~~vDVNVHP~K~eVrf~de~~i~~~i~~~i~~~L~~~~ 330 (594)
||+.|||||||+|+||+|+||+.|.++|.++|+++|....
T Consensus 323 p~~~vDvNVhP~K~eV~f~~e~~i~~~i~~~l~~~l~~~~ 362 (367)
T 3h4l_A 323 PMSLIDVNVTPDKRVILLHNERAVIDIFKTTLSDYYNRQE 362 (367)
T ss_dssp CGGGEECCCSSSTTCCEETTHHHHHHHHHHHHHHHHHHHH
T ss_pred CHHHCCCEECCCCCEEEECCHHHHHHHHHHHHHHHHHHCC
T ss_conf 7587463068872889966988999999999999986333
No 3
>3na3_A DNA mismatch repair protein MLH1; MUTL protein homolog 1, DNA damag repair, structural genomics consortium, SGC, protein bindin; HET: DNA ATP; 2.50A {Homo sapiens}
Probab=100.00 E-value=0 Score=704.85 Aligned_cols=327 Identities=33% Similarity=0.550 Sum_probs=307.2
Q ss_pred CCCCCCHHHHHHHCCCCCCCCHHHHHHHHHHHHHHCCCCEEEEEEECCCEEEEEEEECCCCCCHHHHHHHHCCCCCCCCH
Q ss_conf 67458889999852687226978999999987772699679999980984399999888998898999875024665631
Q gi|254780399|r 2 KIRKLSEKIINQIAAGEIIERPSIAIKELIENSLDAESSRVETVIAGGGKSFFQITDNGFGMTSEEIPMAVQRHCTSKIS 81 (594)
Q Consensus 2 ~I~~L~~~~~~~Iaagevi~~~~svVkELveNSlDAgAt~I~v~i~~~g~~~i~V~DnG~Gi~~~dl~~~~~rh~TSKi~ 81 (594)
+||+||++++++|||||||++|++|||||||||||||||+|.|.|+++|+.+|+|.|||+||+++||.+++.||||||+.
T Consensus 8 ~I~~L~~~~~~~i~s~~vi~~~~s~vkELieNsiDA~At~I~i~i~~~g~~~I~V~DnG~Gi~~~dl~~~~~~~~tSK~~ 87 (348)
T 3na3_A 8 VIRRLDETVVNRIAAGEVIQRPANAIKEMIENCLDAKSTSIQVIVKEGGLKLIQIQDNGTGIRKEDLDIVCERFTTSKLQ 87 (348)
T ss_dssp CCCCCCHHHHHHHHHHHHCCSHHHHHHHHHHHHHHTTCSEEEEEEEGGGTSEEEEEECSCCCCGGGGGTTTSTTCCSSCC
T ss_pred CCEECCHHHHHHCCCCCEECCHHHHHHHHHHHHHCCCCCEEEEEEECCCEEEEEEEECCCCCCHHHHHHHHHCCCCCCCC
T ss_conf 16658989997718977655889999999865544899889999998987899999899888989999997524576778
Q ss_pred --HHHHHCCCCCCCHHHHHHHHHHEEEEEEEECCCCCCCEEEEECCCCC-CCCCCCCCCCCCEEEEEHHHHHHHHHHHCC
Q ss_conf --24411214884048999876202489998048986301551101000-002110125675788521012112543103
Q gi|254780399|r 82 --DDFSNIHTFGFRGEALPSIGAVSHLTLMSRPPQNNTGAQIAISGEKI-SSVRPVAMNPGTIVEVRDLFFTIPARLNFL 158 (594)
Q Consensus 82 --~dl~~i~t~GFRGEAL~sIa~vs~l~i~s~~~~~~~~~~~~~~~g~~-~~~~~~~~~~GT~V~V~~LF~N~PvRrkfl 158 (594)
+||.++.|||||||||+||+++|+++|+||+.+++.||++.+++|.. ....+++++.||+|+|+|||||+||||||+
T Consensus 88 ~~~dl~~~~t~GfRGeAL~sI~~~s~~~I~Sr~~~~~~~~~~~~~~~~~~~~~~~~~~~~GTtV~V~nLF~n~PvRrk~l 167 (348)
T 3na3_A 88 SFEDLASISTYGFRGEALASISHVAHVTITTKTADGKCAYRASYSDGKLKAPPKPCAGNQGTQITVEDLFYNIATRRKAL 167 (348)
T ss_dssp CC---------CCTTCHHHHHHHSSEEEEEEECTTCSSEEEEEEETTEESSCCEEECCCSEEEEEEESTTTTCHHHHHTS
T ss_pred CHHHHHHCCCCCCCHHHHHHHHHHCCEEEEEECCCCCCCCEEEEECCCCEEECCCCCCCCCCEEEECCCCCCCCHHHHHC
T ss_conf 75542210266632899999985177499961256764617998068623404423467765798700226752555312
Q ss_pred CCHHHHHHHHHHHHHHHHHCCCCCEEEEEECCCCEEEEECCCCCHHHHHHHHHHHHHHHHHHHHHCCCCC--EEEEEEEE
Q ss_conf 4536899999999999873189974999987983079971788104899999732166654310022442--03656666
Q gi|254780399|r 159 KSEQVETNLITDVIRRMAIAYPKVSFTFSTIKSNRYKMNFQSTNGNFPERISQVIGEDFINNAVELNEKS--NEITLQGY 236 (594)
Q Consensus 159 ks~~~e~~~I~~~v~~~aL~~P~V~f~l~~~~~~~~~l~~~~~~~~l~~ri~~i~G~~~~~~l~~i~~~~--~~~~i~G~ 236 (594)
+++++|+.+|.+++++|||+||+|+|+|.++++....+... ...++.+++..+||..+.+++.+++... ..+++.||
T Consensus 168 k~~~~e~~~i~~~i~~~AL~~p~I~F~l~~~gk~~~~~~~~-~~~~~~~~i~~v~G~~~~~~~~~~~~~~~~~~~~i~g~ 246 (348)
T 3na3_A 168 KNPSEEYGKILEVVGRYSVHNAGISFSVKKQGETVADVRTL-PNASTVDNIRSIFGNAVSRELIEIGCEDKTLAFKMNGY 246 (348)
T ss_dssp CCHHHHHHHHHHHHHHHHHHCTTCEEEEEETTCSSCSEECC-TTCCHHHHHHHHHCHHHHTTEEEEEEEEGGGTEEEEEE
T ss_pred CCCHHHHHHHHHHHHHHHHCCCCCEEEEEECCEEEEEEECC-CCCCHHHHHHHHHCHHHHHHCCCCCCCCCCCCEEEECC
T ss_conf 58189999999999998625999649999999999998659-99789999998747365651034333346653123034
Q ss_pred ECCCCCCCCCCHHHHHHHCCCHHHCHHHHHHHHHHHHHHCCCCCCEEEEEEEEEEHHHHCCCCCCHHHHHHHCCHHHHHH
Q ss_conf 21611033232066775152100075888999987554427999807999999606571247571111255359799999
Q gi|254780399|r 237 TGIPTFNRGNANQFYVFINGRTVQDKFILSTIRTAYAETIPLGRYPVVVLLLEIDPRQVDVNVHPAKSYIRFRNPTIIRN 316 (594)
Q Consensus 237 is~P~~~r~~~~~q~ifVNgR~V~~~~l~~AI~~aY~~~l~~g~~P~~vL~i~i~p~~vDVNVHP~K~eVrf~de~~i~~ 316 (594)
++.|..+++ ++.||+|||||||+++.+.+||+++|+++++.++||+|+|+|+|||..+||||||+|+||+|+||+.|++
T Consensus 247 is~p~~~~~-~~~q~~fVN~R~V~~~~l~~aI~~~y~~~l~~~~~P~~vL~i~~p~~~iDVNVhP~K~eV~f~~e~~i~~ 325 (348)
T 3na3_A 247 ISNANYSVK-KCIFLLFINHRLVESTSLRKAIETVYAAYLPKNTHPFLYLSLEISPQNVDVNVHPTKHEVHFLHEESILE 325 (348)
T ss_dssp EECSSCCBS-SCEEEEEETTEECCCTTHHHHHHHHHHTTSCTTCBCEEEEEEECC----------------------CTH
T ss_pred CCCCCCCCC-CCCEEEEECCCEECCHHHHHHHHHHHHHHCCCCCCEEEEEEEEECCHHEEEEECCCCCEEEECCHHHHHH
T ss_conf 268654667-7617999918732567999999999997575898629999999471337741478748899669899999
Q ss_pred HHHHHHHHHHHHCC
Q ss_conf 99997898875317
Q gi|254780399|r 317 FIIQSIQKAINKKG 330 (594)
Q Consensus 317 ~i~~~i~~~L~~~~ 330 (594)
+|.++|+++|...+
T Consensus 326 ~i~~~i~~~L~~~~ 339 (348)
T 3na3_A 326 RVQQHIESKLLGSN 339 (348)
T ss_dssp HHHHHHHHHHC---
T ss_pred HHHHHHHHHHHCCC
T ss_conf 99999999985268
No 4
>1h7s_A PMS1 protein homolog 2; DNA repair, GHL ATPase, mismatch repair, HNPCC; 1.95A {Homo sapiens} SCOP: d.14.1.3 d.122.1.2 PDB: 1h7u_A* 1ea6_A*
Probab=100.00 E-value=0 Score=669.49 Aligned_cols=325 Identities=26% Similarity=0.443 Sum_probs=301.2
Q ss_pred CCCCCCHHHHHHHCCCCCCCCHHHHHHHHHHHHHHCCCCEEEEEEECCCEEEEEEEECCCCCCHHHHHHHHCCCCCCCCH
Q ss_conf 67458889999852687226978999999987772699679999980984399999888998898999875024665631
Q gi|254780399|r 2 KIRKLSEKIINQIAAGEIIERPSIAIKELIENSLDAESSRVETVIAGGGKSFFQITDNGFGMTSEEIPMAVQRHCTSKIS 81 (594)
Q Consensus 2 ~I~~L~~~~~~~Iaagevi~~~~svVkELveNSlDAgAt~I~v~i~~~g~~~i~V~DnG~Gi~~~dl~~~~~rh~TSKi~ 81 (594)
+|++||++++++|+|||||++|++|||||||||||||||+|.|.|+++|+++|+|.|||+||+++||.+++.||+|||+.
T Consensus 14 ~I~~L~~~~~~~i~s~~vi~~~~svvkELieNSiDA~At~I~I~v~~~g~~~I~V~DnG~Gi~~~dl~~~~~~~~tsk~~ 93 (365)
T 1h7s_A 14 AIKPIDRKSVHQICSGQVVLSLSTAVKELVENSLDAGATNIDLKLKDYGVDLIEVSDNGCGVEEENFEGLTLKHHTSKIQ 93 (365)
T ss_dssp ---------------CEEECCHHHHHHHHHHHHHHTTCSEEEEEEEGGGTSEEEEEECSCCCCGGGSGGGGC--------
T ss_pred CCEECCHHHHHHHCCCCEECCHHHHHHHHHHHHHCCCCCEEEEEEECCCEEEEEEEECCCCCCHHHHHHHHHHHCCCCCC
T ss_conf 77619989998828977346888999999977872898889999987984389999899875989986454202367766
Q ss_pred --HHHHHCCCCCCCHHHHHHHHHHEEEEEEEECCCCCCCEEEEECC-CCCCCCCCCCCCCCCEEEEEHHHHHHHHHHH-C
Q ss_conf --24411214884048999876202489998048986301551101-0000021101256757885210121125431-0
Q gi|254780399|r 82 --DDFSNIHTFGFRGEALPSIGAVSHLTLMSRPPQNNTGAQIAISG-EKISSVRPVAMNPGTIVEVRDLFFTIPARLN-F 157 (594)
Q Consensus 82 --~dl~~i~t~GFRGEAL~sIa~vs~l~i~s~~~~~~~~~~~~~~~-g~~~~~~~~~~~~GT~V~V~~LF~N~PvRrk-f 157 (594)
+|+.++.|||||||||+|||++|+++|+||+.+++.||++.+++ +.+...+|++++.||+|+|+|||||+||||| |
T Consensus 94 ~~~d~~~~~t~GfRGeaL~si~~~s~~~i~S~~~~~~~~~~~~~~~~~~~~~~~~~~~~~GTtV~v~~lF~n~PvRrk~~ 173 (365)
T 1h7s_A 94 EFADLTQVETFGFRGEALSSLCALSDVTISTCHASAKVGTRLMFDHNGKIIQKTPYPRPRGTTVSVQQLFSTLPVRHKEF 173 (365)
T ss_dssp --CCTTCSEEESSSSSHHHHHHHHSEEEEEEECTTCSSCEEEEECTTSCEEEEEECCCCSEEEEEEESTTTTSHHHHHHH
T ss_pred CCCCCCCCCCCCCCCHHHHHHHHHCCEEEEEECCCCCHHEEEEEECCCCCCCCCCCCCCCCCEEEEEECCCCCCHHHHHC
T ss_conf 23365334557742278888886245158884389743349998246653223564467875899961335772243321
Q ss_pred CCCHHHHHHHHHHHHHHHHHCCCCCEEEEEECCCC--EEEEECCCCCHHHHHHHHHHHHHHHHHHHHHC-----------
Q ss_conf 34536899999999999873189974999987983--07997178810489999973216665431002-----------
Q gi|254780399|r 158 LKSEQVETNLITDVIRRMAIAYPKVSFTFSTIKSN--RYKMNFQSTNGNFPERISQVIGEDFINNAVEL----------- 224 (594)
Q Consensus 158 lks~~~e~~~I~~~v~~~aL~~P~V~f~l~~~~~~--~~~l~~~~~~~~l~~ri~~i~G~~~~~~l~~i----------- 224 (594)
+|+.++|+.+|.+++++|||+||+|+|+|.++... ...+..+.+..++.+++..+||..+.++++++
T Consensus 174 ~k~~~~e~~~i~~~v~~~Al~~p~V~f~l~~~~~~~~~~~~~~~~~~~~~~~~i~~v~G~~~~~~li~~~~~~~~~~~~~ 253 (365)
T 1h7s_A 174 QRNIKKEYAKMVQVLHAYCIISAGIRVSCTNQLGQGKRQPVVCTGGSPSIKENIGSVFGQKQLQSLIPFVQLPPSDSVCE 253 (365)
T ss_dssp HHTHHHHHHHHHHHHHHHHHHCTTCEEEEEEECTTSCEEEEEECCCCSSHHHHHHHHHCHHHHHTEEECCCCCCCHHHHH
T ss_pred CCCHHHHHHHHHHHHHHHHHCCCCEEEEEEEECCCCCEEEEEECCCCCCHHHHHHHHHHHHHHHHCCCHHCCCCCCCHHH
T ss_conf 35205899999998765522279647999973676614556750448428899999874899974163010465430234
Q ss_pred -------CCCCEEEEEEEEECCCC--CCCCCCHHHHHHHCCCHHHCHHHHHHHHHHHHHHCCCCCCEEEEEEEEEEHHHH
Q ss_conf -------24420365666621611--033232066775152100075888999987554427999807999999606571
Q gi|254780399|r 225 -------NEKSNEITLQGYTGIPT--FNRGNANQFYVFINGRTVQDKFILSTIRTAYAETIPLGRYPVVVLLLEIDPRQV 295 (594)
Q Consensus 225 -------~~~~~~~~i~G~is~P~--~~r~~~~~q~ifVNgR~V~~~~l~~AI~~aY~~~l~~g~~P~~vL~i~i~p~~v 295 (594)
+.....++++||++.|+ ..|+++++||+|||||||+++.|.+||+++|+ .++.++||+|+|+|+|||+.|
T Consensus 254 ~~~~~~~~~~~~~~~i~G~is~p~~~~~r~~~~~q~lfVNgR~V~~~~l~~~i~~~y~-~~~~~~~P~~~L~i~~p~~~i 332 (365)
T 1h7s_A 254 EYGLSCSDALHNLFYISGFISQCTHGVGRSSTDRQFFFINRRPCDPAKVCRLVNEVYH-MYNRHQYPFVVLNISVDSECV 332 (365)
T ss_dssp HHTCCTTTTTSCCCEEEEEEECCSTTTSBSSSTTEEEEETTEEECCHHHHHHHHHHHH-TTCTTCBCCEEEEEECCGGGE
T ss_pred HCCCCCCCCCCCCEEEEEEECCCCCCCCCCCCCCEEEEECCEEECCHHHHHHHHHHHH-HCCCCCCCEEEEEEEECHHHE
T ss_conf 3055543223673479888636744346677764599996848067999999999998-554799848999999563646
Q ss_pred CCCCCCHHHHHHHCCHHHHHHHHHHHHHHHHH
Q ss_conf 24757111125535979999999997898875
Q gi|254780399|r 296 DVNVHPAKSYIRFRNPTIIRNFIIQSIQKAIN 327 (594)
Q Consensus 296 DVNVHP~K~eVrf~de~~i~~~i~~~i~~~L~ 327 (594)
||||||+|+||+|+||+.|.++|.++|.+++.
T Consensus 333 DvNvhP~K~eV~f~~e~~i~~~i~~~l~~~~~ 364 (365)
T 1h7s_A 333 DINVTPDKRQILLQEEKLLLAVLKTSLIGMFD 364 (365)
T ss_dssp EEC------CEEETTHHHHHHHHHHHHHHHHC
T ss_pred EECCCCCCCEEEECCHHHHHHHHHHHHHHHHC
T ss_conf 21347874789967988999999999999865
No 5
>3kdg_A DNA mismatch repair protein MUTL; endonuclease, DNA damage, DNA repair, hydrolase; HET: DNA; 2.00A {Bacillus subtilis} PDB: 3gab_A* 3kdk_A*
Probab=100.00 E-value=0 Score=400.14 Aligned_cols=192 Identities=30% Similarity=0.560 Sum_probs=183.6
Q ss_pred HHHCCCCEEEEECCCCCEEECCCCEEECCHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHH
Q ss_conf 11005721131045510000258635400589989999999852210388421111222234678347777999899998
Q gi|254780399|r 402 THYQLGIACAQIHQNYIISQTTDGLVIVDQHAAHERLIFEKMRQDFNSTKITSQTLLTPEIIDLLEGECALIMEHDEDLH 481 (594)
Q Consensus 402 ~~~~~~~~igQ~~~~yIl~~~~~gL~iIDQHAAhERI~yE~l~~~~~~~~~~~Q~Ll~P~~i~Ls~~e~~~l~~~~~~l~ 481 (594)
..+|.+++|||++++|||++.++||++||||||||||+||+|++.+.+....+|+|++|+.++|++.|...+.++++.|+
T Consensus 4 ~~~p~~~~igQ~~~~YIl~~~~~~L~iIDQHaAhERI~yE~l~~~~~~~~~~~Q~Ll~P~~l~l~~~e~~~l~~~~~~L~ 83 (197)
T 3kdg_A 4 DRVPIMYPIGQMHGTYILAQNENGLYIIDQHAAQERIKYEYFREKVGEVEPEVQEMIVPLTFHYSTNEALIIEQHKQELE 83 (197)
T ss_dssp CCCCCCEEEEEETTTEEEEEETTEEEEEEHHHHHHHHHHHHHHHHHHCSSCCEEEEEEEEEEECCTTHHHHHHHTHHHHH
T ss_pred CCCCCCCCHHHCCCEEEEEEECCCEEEEEHHHHHHHHHHHHHHHHHHCCCCCCEECCCCCCCCCCHHHHHHHHHHHHHHH
T ss_conf 65888668101768889998189789987799899999999999980588752212567556789899988999999999
Q ss_pred HCCCEEEEECCCEEEEEECCCCCCCCCHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHH
Q ss_conf 66959996079879999526111556789999999999985788664689999999976348666458888989999999
Q gi|254780399|r 482 RLGIKAERFGPNAIAIREIPAILSKKNIPQLLRDIIDEIIDSSTTYTLQDRIENILATMACYGSIRSGRKMQSIEMNRLL 561 (594)
Q Consensus 482 ~~Gf~~e~~g~~~~~i~~iP~~l~~~~~~~~l~dll~~l~~~~~~~~~~~~~~~~l~s~ACr~AIk~gd~L~~~e~~~Li 561 (594)
+|||+++.||++++.|+++|.++...+...++.++++++.+.+. ...++..+++++++|||+|||+||+|+.+||+.||
T Consensus 84 ~~Gf~~~~~g~~~~~i~~~P~~l~~~~~~~~i~~~l~~l~~~~~-~~~~~~~~~i~~~~AC~~Aik~g~~Ls~~E~~~Li 162 (197)
T 3kdg_A 84 SVGVFLESFGSNSYIVRCHPAWFPKGEEAELIEEIIQQVLDSKN-IDIKKLREEAAIMMSCKGSIKANRHLRNDEIKALL 162 (197)
T ss_dssp HTTCCCEECSTTEEEEEEEETTSCTTCHHHHHHHHHHHHHHHSS-CCHHHHHHHHHHHHHHCC----CCCCCHHHHHHHH
T ss_pred HCCCEEEECCCCCEEEEEECCCCCCCHHHHHHHHHHHHHHHCCC-CCHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHH
T ss_conf 75957885288612577404446752088899999999984589-75589999999999988860188989999999999
Q ss_pred HHHHHCCCCCCCCCCCEEEEEECHHHHHHHCCC
Q ss_conf 999818888788788727998388899764187
Q gi|254780399|r 562 REMEKNPNSSQCNHGRPTFIKLKLSDIEKLFGR 594 (594)
Q Consensus 562 ~~L~~c~~P~~CpHGRPt~~~l~~~el~k~F~R 594 (594)
++|+.|++||+|||||||++.|+.+||+|+|+|
T Consensus 163 ~~L~~c~~P~~CPhGRP~~~~l~~~el~k~F~R 195 (197)
T 3kdg_A 163 DDLRSTSDPFTCPHGRPIIIHHSTYEMEKMFKR 195 (197)
T ss_dssp HHHHHSSCTTBCTTSCBCEEEEEHHHHHHHHCS
T ss_pred HHHHHCCCCCCCCCCCCEEEECCHHHHHHHHCC
T ss_conf 999828998959799948899589999987286
No 6
>1x9z_A DNA mismatch repair protein MUTL; alpha-beta fold, dimer, replication, signaling protein; HET: DNA MSE; 2.10A {Escherichia coli} SCOP: d.292.1.1
Probab=100.00 E-value=5.1e-36 Score=277.01 Aligned_cols=175 Identities=17% Similarity=0.241 Sum_probs=156.9
Q ss_pred CCCCEEEEECCCCCEEECCCCEEECCHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHCC
Q ss_conf 05721131045510000258635400589989999999852210388421111222234678347777999899998669
Q gi|254780399|r 405 QLGIACAQIHQNYIISQTTDGLVIVDQHAAHERLIFEKMRQDFNSTKITSQTLLTPEIIDLLEGECALIMEHDEDLHRLG 484 (594)
Q Consensus 405 ~~~~~igQ~~~~yIl~~~~~gL~iIDQHAAhERI~yE~l~~~~~~~~~~~Q~Ll~P~~i~Ls~~e~~~l~~~~~~l~~~G 484 (594)
..|+++||++++|||++.++||++||||||||||+||++.+. ...+.+|+|++|+.++|++.|...++++.+.|++||
T Consensus 7 ~~grvl~~~~~~Yil~e~~~gl~liDqhaA~eri~~~~l~~~--~~~i~sQ~LL~P~~v~ls~~e~~~l~~~~~~L~~lG 84 (188)
T 1x9z_A 7 SFGRVLTIVHSDCALLERDGNISLLSLPVAERWLRQAQLTPG--EAPVCAQPLLIPLRLKVSAEEKSALEKAQSALAELG 84 (188)
T ss_dssp CCCEEEEEETTTEEEEEETTEEEEEEHHHHHHHHHHHHHSBT--TBCCCEEEEEEEEEEECCHHHHHHHHHHHHHHHHTT
T ss_pred CCCEEHHHCCCEEEEEEECCCEEEEEHHHHHHHHHHHHHHHC--CCCCCCCCCCCCEEECCCHHHHHHHHHHHHHHHHCC
T ss_conf 566333213388899982897699649999999999997541--589776205789375289999999999999999779
Q ss_pred CEEEEECCCEEEEEECCCCCCCCCHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHH
Q ss_conf 59996079879999526111556789999999999985788664689999999976348666458888989999999999
Q gi|254780399|r 485 IKAERFGPNAIAIREIPAILSKKNIPQLLRDIIDEIIDSSTTYTLQDRIENILATMACYGSIRSGRKMQSIEMNRLLREM 564 (594)
Q Consensus 485 f~~e~~g~~~~~i~~iP~~l~~~~~~~~l~dll~~l~~~~~~~~~~~~~~~~l~s~ACr~AIk~gd~L~~~e~~~Li~~L 564 (594)
|+++.+ ++++.|+++|.++...+.++++.|+++.+.+.+... .+.++++|||+|||+|+.|+.+||+.||++|
T Consensus 85 f~~e~~-~~~~~I~~vP~~l~~~~~~~~i~dll~~l~~~~~~~------~~~la~~ack~aik~~~~ls~~E~~~Ll~el 157 (188)
T 1x9z_A 85 IDFQSD-AQHVTIRAVPLPLRQQNLQILIPELIGYLAKQSVFE------PGNIAQWIARNLMSEHAQWSMAQAITLLADV 157 (188)
T ss_dssp CEEEEC-SSEEEEEEEEGGGTTSCHHHHHHHHHHHHTTCSSCC------HHHHHHHHHHTTSCCCCSCCHHHHHHHHHHH
T ss_pred CEEEEE-CCEEEEEECCHHHCCCCHHHHHHHHHHHHHHCCCCH------HHHHHHHHHHHHHHCCCCCCHHHHHHHHHHH
T ss_conf 599961-788999977921154789999999999998679746------9999999989876568989999999999999
Q ss_pred HHCCCCCCCCCCCEE-----EEEECHHHHHHHCC
Q ss_conf 818888788788727-----99838889976418
Q gi|254780399|r 565 EKNPNSSQCNHGRPT-----FIKLKLSDIEKLFG 593 (594)
Q Consensus 565 ~~c~~P~~CpHGRPt-----~~~l~~~el~k~F~ 593 (594)
.+| |||++++ +.+++....-+.|.
T Consensus 158 e~~-----cp~~~~~~~~~ll~~id~~~~l~~~~ 186 (188)
T 1x9z_A 158 ERL-----CPQLVKTPPGGLLQSVDLHPAIKALK 186 (188)
T ss_dssp HHH-----CHHHHHSCCTTTEEECCCHHHHHHHH
T ss_pred HHH-----CCCCCCCCCHHHHHHCCHHHHHHHHC
T ss_conf 986-----87878688655533248699999863
No 7
>2zbk_B Type 2 DNA topoisomerase 6 subunit B; DNA binding protein, decatenation, ATPase, drug design, DNA-binding, magnesium, metal-binding; HET: RDC; 3.56A {Sulfolobus shibatae}
Probab=99.94 E-value=3.2e-26 Score=206.61 Aligned_cols=176 Identities=19% Similarity=0.183 Sum_probs=146.6
Q ss_pred CCCCHHHHHHHHHHHHHHCCCC-------EEEEEEE--CCCEEEEEEEECCCCCCHHHHHHHHCCCCCCCCH--HHHHHC
Q ss_conf 2269789999999877726996-------7999998--0984399999888998898999875024665631--244112
Q gi|254780399|r 19 IIERPSIAIKELIENSLDAESS-------RVETVIA--GGGKSFFQITDNGFGMTSEEIPMAVQRHCTSKIS--DDFSNI 87 (594)
Q Consensus 19 vi~~~~svVkELveNSlDAgAt-------~I~v~i~--~~g~~~i~V~DnG~Gi~~~dl~~~~~rh~TSKi~--~dl~~i 87 (594)
++-++++||||||+||+||+|+ .|.|.+. +.+...|.|.|||+||+++|+..++.+|+||+.+ .|+...
T Consensus 28 ~~~~l~~~vkELi~Na~DA~a~~~~~~~i~v~I~~~~~~~~~~~i~V~DnGiGms~e~l~~~f~~f~~s~~~~~~~~~G~ 107 (530)
T 2zbk_B 28 PARALYQTVRELIENSLDATDVHGILPNIKITIDLIDDARQIYKVNVVDNGIGIPPQEVPNAFGRVLYSSKYVNRQTRGM 107 (530)
T ss_dssp HHHHHHHHHHHHHHHHHTTTTTTTCCCCCEEEEEEEETTTTEEEEEEECCSCCCCGGGSHHHHTSCCCSCCCCCSCCSCS
T ss_pred HHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEEEEEECCCCCEEEEEEEECCCCCCHHHHHHHHHHHCCCCCCCCCCCCCC
T ss_conf 46569999999999999888725898835999998348995789999962898999999998642034776453244786
Q ss_pred CCCCCCHHHHHHHHHHEE-EEEEEECCCCCCCEEEEECCCCCCCCCCCCCCCCCEEEEEHHHHHHHHHHHCCCCHHHHHH
Q ss_conf 148840489998762024-8999804898630155110100000211012567578852101211254310345368999
Q gi|254780399|r 88 HTFGFRGEALPSIGAVSH-LTLMSRPPQNNTGAQIAISGEKISSVRPVAMNPGTIVEVRDLFFTIPARLNFLKSEQVETN 166 (594)
Q Consensus 88 ~t~GFRGEAL~sIa~vs~-l~i~s~~~~~~~~~~~~~~~g~~~~~~~~~~~~GT~V~V~~LF~N~PvRrkflks~~~e~~ 166 (594)
.++||||+++.|+..++. +++.|+..++..+|..... ......+.....||++.+.++|+++|+|.++++....+..
T Consensus 108 ~GlGl~~~~~~s~~~~g~~v~v~S~~~~~s~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 185 (530)
T 2zbk_B 108 YGLGVKAAVLYSQMHQDKPIEIETSPVNSKRIYTFKLK--IDINKNEPIIVERGSVENTRGFHGTSVAISIPGDWPKAKS 185 (530)
T ss_dssp SSSHHHHHHHHHHHHCCCCEEEEEECTTCSEEEEEEEE--EETTTTEEEEEEEEEEECCSSCCEEEEEEEEECCHHHHHH
T ss_pred CCCCHHHHHHHHHHHCCCEEEEEEECCCCCEEEEEECC--CCCCCCCCCCCCCCEEECCCCCCCEEEEEECCCHHHHHHH
T ss_conf 54458999999998059759999945899648998334--4356676534578665035677731466500005555555
Q ss_pred HHHHHHHHHHHCCCCCEEEEEECCCCEEEE
Q ss_conf 999999998731899749999879830799
Q gi|254780399|r 167 LITDVIRRMAIAYPKVSFTFSTIKSNRYKM 196 (594)
Q Consensus 167 ~I~~~v~~~aL~~P~V~f~l~~~~~~~~~l 196 (594)
.+.+.+..+++.+|++.|.+..........
T Consensus 186 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 215 (530)
T 2zbk_B 186 RIYEYIKRTYIITPYAEFIFKDPEGNVTYY 215 (530)
T ss_dssp HHHHHHHHHHHHCTTCCEEEECTTSCEEEE
T ss_pred HHHHHHHHHHHCCCCCEEEEECCCCCEEEE
T ss_conf 589999987632888638997389734652
No 8
>1mu5_A Type II DNA topoisomerase VI subunit B; GHKL ATPase, helix two-turns helix; 2.00A {Sulfolobus shibatae} SCOP: a.156.1.3 d.14.1.3 d.122.1.2 PDB: 1mx0_A* 1z5b_A* 1z5a_A* 1z59_A* 1z5c_A* 2hkj_A*
Probab=99.88 E-value=1.7e-21 Score=172.58 Aligned_cols=173 Identities=20% Similarity=0.231 Sum_probs=127.7
Q ss_pred CHHHHHHHHHHHHHHCCCC-----EEEEEEE--CCC--EEEEEEEECCCCCCHHHHHHHHCCCCCCCCHH--HHHHCCCC
Q ss_conf 9789999999877726996-----7999998--098--43999998889988989998750246656312--44112148
Q gi|254780399|r 22 RPSIAIKELIENSLDAESS-----RVETVIA--GGG--KSFFQITDNGFGMTSEEIPMAVQRHCTSKISD--DFSNIHTF 90 (594)
Q Consensus 22 ~~~svVkELveNSlDAgAt-----~I~v~i~--~~g--~~~i~V~DnG~Gi~~~dl~~~~~rh~TSKi~~--dl~~i~t~ 90 (594)
++.++|||||+|||||+++ .|.|.|+ +.+ ...|.|+|||+||++++++.++.|+.||+-.. +..-...+
T Consensus 32 ~l~~~v~ElV~NAiDa~~~~g~~p~I~I~I~~~~~~~~~~~I~V~DNG~GI~~e~i~~iF~r~~~~sk~~~~~~~G~~Gl 111 (471)
T 1mu5_A 32 ALYQTVRELIENSLDATDVHGILPNIKITIDLIDDARQIYKVNVVDNGIGIPPQEVPNAFGRVLYSSKYVNRQTRGMYGL 111 (471)
T ss_dssp HHHHHHHHHHHHHHHTTGGGTCCCEEEEEEEEEETTTTEEEEEEECCSCCCCGGGHHHHHHCCCCC-CCCCSCCSCSCTT
T ss_pred HHHHHHHHHHHHHHHHHHHCCCCCCEEEEEEECCCCCCEEEEEEEECCCCCCHHHHHHHHHHHCCCCCCCCCCCCCCCCC
T ss_conf 69999999999999978855998716999997368886899999962899999999998650262567665036896213
Q ss_pred CCCHHHHHHHHHHEE-EEEEEECCCCCCCEEEEECCCCCCCCCCCCCCCCCEEEEEHHHHHHHHHHHCCCCHHHHHHHHH
Q ss_conf 840489998762024-8999804898630155110100000211012567578852101211254310345368999999
Q gi|254780399|r 91 GFRGEALPSIGAVSH-LTLMSRPPQNNTGAQIAISGEKISSVRPVAMNPGTIVEVRDLFFTIPARLNFLKSEQVETNLIT 169 (594)
Q Consensus 91 GFRGEAL~sIa~vs~-l~i~s~~~~~~~~~~~~~~~g~~~~~~~~~~~~GT~V~V~~LF~N~PvRrkflks~~~e~~~I~ 169 (594)
|++|.++.|.....+ ++|+|++.++..+|...+.... ...+|. ...+|++...++|+++||+.++..+.++..+.+.
T Consensus 112 Gl~~~~~~s~~~~G~~i~V~S~~~~~~~~~~~~l~id~-~kn~p~-i~~~~~~~~~~~~~Gt~v~l~~~~~~~~~~~~i~ 189 (471)
T 1mu5_A 112 GVKAAVLYSQMHQDKPIEIETSPVNSKRIYTFKLKIDI-NKNEPI-IVERGSVENTRGFHGTSVAISIPGDWPKAKSRIY 189 (471)
T ss_dssp THHHHHHHHHHHCCCCEEEEEECTTCSEEEEEEEEECT-TTCCEE-EEEEEEEECCTTCCEEEEEEEEECCHHHHHHHHH
T ss_pred CHHHHHHHHHHCCCCEEEEEEECCCCCEEEEEEEEEEC-CCCCCC-CCCCEEEECCCCCCCEEEEEEECCHHHHHHHHHH
T ss_conf 48999999997379469999944899737998732213-567765-6787066057666771699850301777777899
Q ss_pred HHHHHHHHCCCCCEEEEEECCCCEEEE
Q ss_conf 999998731899749999879830799
Q gi|254780399|r 170 DVIRRMAIAYPKVSFTFSTIKSNRYKM 196 (594)
Q Consensus 170 ~~v~~~aL~~P~V~f~l~~~~~~~~~l 196 (594)
+.+++.||++|++.|+|...+.....+
T Consensus 190 eyl~rtAi~nPha~i~~~~p~~e~~~~ 216 (471)
T 1mu5_A 190 EYIKRTYIITPYAEFIFKDPEGNVTYY 216 (471)
T ss_dssp HHHHHHHHHCTTCEEEEECTTCCEEEE
T ss_pred HHHHHHHHCCCCEEEEEECCCCCEEEE
T ss_conf 999887640887189998699974896
No 9
>2q2e_B Type 2 DNA topoisomerase 6 subunit B; DNA-binding, SPO11, ATPase; 4.00A {Methanosarcina mazei}
Probab=99.83 E-value=3.6e-20 Score=163.10 Aligned_cols=164 Identities=20% Similarity=0.230 Sum_probs=124.5
Q ss_pred CCHHHHHHHHHHHHHHCCCC-----EEEEEEE--CCCEEEEEEEECCCCCCHHHHHHH-HCCCCCCCCH--HHHHHCCCC
Q ss_conf 69789999999877726996-----7999998--098439999988899889899987-5024665631--244112148
Q gi|254780399|r 21 ERPSIAIKELIENSLDAESS-----RVETVIA--GGGKSFFQITDNGFGMTSEEIPMA-VQRHCTSKIS--DDFSNIHTF 90 (594)
Q Consensus 21 ~~~~svVkELveNSlDAgAt-----~I~v~i~--~~g~~~i~V~DnG~Gi~~~dl~~~-~~rh~TSKi~--~dl~~i~t~ 90 (594)
-+++++|+|||+||+||+|+ .|.|.|. +++...|+|+|||+||+.+|++.+ +.-|++||.. +++.-.+.+
T Consensus 36 ~~L~~~v~Elv~Na~Da~~~~g~~~~I~v~i~~~~~~~~~i~V~DnG~Gm~~d~~~~~l~~l~~sgK~~~~~~s~G~~Gv 115 (621)
T 2q2e_B 36 RSLITTVKEAVDNALDACEEAGILPDILVQVERTGPDYVTVIIEDNGPGIVREQIPKVFAKLLYGSRFHALKQSRGQQGI 115 (621)
T ss_dssp HHHHHHHHHHHHHHHHHHTTTSCSCEEEECCEEETTTEEEEEEECCSCCCCGGGHHHHHSCCCCC--CCCCC-CCSSSSH
T ss_pred CHHHHHHHHHHHHHHHHHHHCCCCCCEEEEEEECCCCEEEEEEEEECCCCCHHHHHHHHHEECCCCCCCCCCCCCCCCCC
T ss_conf 17899899999718868976399982599999689964699999848999989999986084667787665117997665
Q ss_pred CCCHHHHHHHHHHE-EEEEEEECCCCCCCEEEEECCCCCCC--------CCCCCCCCCCEEEEEHHHHHHHHHHHCCCCH
Q ss_conf 84048999876202-48999804898630155110100000--------2110125675788521012112543103453
Q gi|254780399|r 91 GFRGEALPSIGAVS-HLTLMSRPPQNNTGAQIAISGEKISS--------VRPVAMNPGTIVEVRDLFFTIPARLNFLKSE 161 (594)
Q Consensus 91 GFRGEAL~sIa~vs-~l~i~s~~~~~~~~~~~~~~~g~~~~--------~~~~~~~~GT~V~V~~LF~N~PvRrkflks~ 161 (594)
||+|+++.|.-.++ +++|.|+..++..+|...+.++.... ........||.+.+..-|......+.
T Consensus 116 G~~gv~~~S~~~va~~v~V~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----- 190 (621)
T 2q2e_B 116 GISAAVLYAQMTAGRHTKILSKTSPTAPAHYYELMINTSTNEPDILVDEVRDWFRPHGTQIELEMRAAYVKGRRQ----- 190 (621)
T ss_dssp HHHHHHHHHHHHTCCCCEEEEECSSSSCEEEEECCCCSSSCSCCCCCEEECCCSCSSCCCEEEECSCCCCCCSSS-----
T ss_pred CHHHHHHHHHHHCCCEEEEEEECCCCCCEEEEEECCCCCCCCCCEEECCCCCCCCCEEEEEEECCCCCHHHHHHH-----
T ss_conf 676888876864286389999617987259998415665567731103655664440479740223430122689-----
Q ss_pred HHHHHHHHHHHHHHHHCCCCCEEEEEECCCCEE
Q ss_conf 689999999999987318997499998798307
Q gi|254780399|r 162 QVETNLITDVIRRMAIAYPKVSFTFSTIKSNRY 194 (594)
Q Consensus 162 ~~e~~~I~~~v~~~aL~~P~V~f~l~~~~~~~~ 194 (594)
.|.+.++++|+.+|++.+.+...+....
T Consensus 191 -----~i~~~lr~~a~~~~~~~i~~~~~~~~~~ 218 (621)
T 2q2e_B 191 -----SIYEYLKATAIVNPHARITLIDPDGNEE 218 (621)
T ss_dssp -----SSHHHHHHHHHHCCSCEEEECCTTSCCE
T ss_pred -----HHHHHHHHHHHHCCCCEEEEECCCCCEE
T ss_conf -----9999999998508785699864899706
No 10
>3cwv_A DNA gyrase, B subunit, truncated; structural genomics, unknown function, ATP-binding, isomerase, nucleotide-binding, topoisomerase; HET: DNA; 1.95A {Myxococcus xanthus dk 1622}
Probab=99.38 E-value=3.4e-10 Score=91.34 Aligned_cols=280 Identities=13% Similarity=0.113 Sum_probs=153.3
Q ss_pred HHHHHHHHHHHHHH---CC-CCEEEEEEECCCEEEEEEEECCCCCCHHHHHHHHCCCCCCCCHHHHHHCCCCCCCHHHHH
Q ss_conf 78999999987772---69-967999998098439999988899889899987502466563124411214884048999
Q gi|254780399|r 23 PSIAIKELIENSLD---AE-SSRVETVIAGGGKSFFQITDNGFGMTSEEIPMAVQRHCTSKISDDFSNIHTFGFRGEALP 98 (594)
Q Consensus 23 ~~svVkELveNSlD---Ag-At~I~v~i~~~g~~~i~V~DnG~Gi~~~dl~~~~~rh~TSKi~~dl~~i~t~GFRGEAL~ 98 (594)
+...|.|+|.||+| || |++|.|.+...| .|.|.|||.||+.+.+. .-|+.+|..++-+ -.+.|.-| .++
T Consensus 31 l~hlv~EivdNsvDEa~aG~~~~I~V~i~~Dg--~IsV~dnGrGIPv~~~~---~l~~g~~f~~~~~-~~~gG~~G-g~s 103 (369)
T 3cwv_A 31 LHHLVYFLLDVAYEEARRGECRDVVLEVGGDG--SIALFCTSRTVTAENLV---RVATGAGFLGRPP-GDGWGWDS-MLV 103 (369)
T ss_dssp HHHHHHHHHHHHHHHHHTTCCSEEEEEECTTS--CEEEEEEESSCCHHHHH---HHHTTTTGGGSSC-CCSTTTTS-SHH
T ss_pred CEEEEEEEEECCHHHHHCCCCCEEEEEECCCC--CEEEEECCCCCEEEEEE---EEEECCCCCCCCC-CCCCCCCC-EEE
T ss_conf 55899888653220764488877999999999--69999289995220778---8741023368777-66534665-399
Q ss_pred HHHHHE-EEEEEEECCCCCCCEEEEECCCCCCC-------CC--CCCCCCCCEEEEEHHHHHHHHHHHCCCCHHHHHHHH
Q ss_conf 876202-48999804898630155110100000-------21--101256757885210121125431034536899999
Q gi|254780399|r 99 SIGAVS-HLTLMSRPPQNNTGAQIAISGEKISS-------VR--PVAMNPGTIVEVRDLFFTIPARLNFLKSEQVETNLI 168 (594)
Q Consensus 99 sIa~vs-~l~i~s~~~~~~~~~~~~~~~g~~~~-------~~--~~~~~~GT~V~V~~LF~N~PvRrkflks~~~e~~~I 168 (594)
..-++| ++++.++..+. -|+..++.|.... .+ +.....||+|+-. |-...| .........+
T Consensus 104 vvNalS~~~~Vev~r~~~--~~~~~f~~g~~~~~~~~~~~~k~~~~~~~~gT~i~F~------pD~~iF-~~~~~~~~~i 174 (369)
T 3cwv_A 104 VSLALSSRYQVDIWADGR--QWRVMGEHGHPQGEGAAVTPMEPMPVSAERGVRVHFV------PDATIF-EVLAFDRARL 174 (369)
T ss_dssp HHHHTEEEEEEEEEETTE--EEEEEEETTEECTTCEEESSCCCCSSCCSEEEEEEEE------ECTTTC-SCCCCCHHHH
T ss_pred EEEEEEEEEEEEEEECCE--EEEEEEEECCCCCCCCCCCCCEECCCCCCCCCEEEEE------CCCCCC-CCEEECHHHH
T ss_conf 999982089999997997--9999888572547883514403526766899789996------663554-4226527888
Q ss_pred HHHHHHHHHCCCCCEEEEEECCCCEEEEECCCCCHHHHHHHHHHHHHH--HHHHHHHCCCCCEEEEEEEEECCCCCCCCC
Q ss_conf 999999873189974999987983079971788104899999732166--654310022442036566662161103323
Q gi|254780399|r 169 TDVIRRMAIAYPKVSFTFSTIKSNRYKMNFQSTNGNFPERISQVIGED--FINNAVELNEKSNEITLQGYTGIPTFNRGN 246 (594)
Q Consensus 169 ~~~v~~~aL~~P~V~f~l~~~~~~~~~l~~~~~~~~l~~ri~~i~G~~--~~~~l~~i~~~~~~~~i~G~is~P~~~r~~ 246 (594)
.+.+++.|.-+|.+.+.+.............. +.+.+-+..+.... +.+..+.++.+..+.++.-.+...+ ..
T Consensus 175 ~~~lr~~a~l~~gl~i~l~~~~~~~~~~~~~~--~g~~~fv~~l~~~~~~l~~~~~~~~~~~~~~~vEval~~~~---~~ 249 (369)
T 3cwv_A 175 SRRCNELAALAPGLRVSFADLQRGERTLWHLP--GGVAQWAHVLTEARPQLHPEPVVFDFTWDGLRVQCALQWCE---DE 249 (369)
T ss_dssp HHHHHHHHHHSTTCEEEEEETTTTEEEEEECT--THHHHHHHHHHTTSCBSSSSCEEEEEEETTEEEEEEEEEBS---SS
T ss_pred HHHHHHHHHCCCCCCCEEEEECCCCEEEEEEC--CCHHHHHHHHHCCCCCCCCCCEEEEEEEEEEEEEEEEEECC---CC
T ss_conf 64420044306996000258407944689735--74788999875146623547789997766553899999748---88
Q ss_pred CHHHHHHHCCCHHHC-----HHHHHHHHHHHHHHCCCC----------CCEEEEEEEEEEHHH--HCCCCCCHHHHHHHC
Q ss_conf 206677515210007-----588899998755442799----------980799999960657--124757111125535
Q gi|254780399|r 247 ANQFYVFINGRTVQD-----KFILSTIRTAYAETIPLG----------RYPVVVLLLEIDPRQ--VDVNVHPAKSYIRFR 309 (594)
Q Consensus 247 ~~~q~ifVNgR~V~~-----~~l~~AI~~aY~~~l~~g----------~~P~~vL~i~i~p~~--vDVNVHP~K~eVrf~ 309 (594)
...++-|||+=+=.+ ..+..|+..+...+.... ..-.+++++.++-.. .| ..+|. |+.
T Consensus 250 ~~~~~SFVN~I~T~~GGTHv~g~~~~l~k~i~~~~kk~k~~i~~~dIregL~~visV~~~~~nP~Fe---gQTKe--kL~ 324 (369)
T 3cwv_A 250 DSTLLSFANAVRTVRHGAHVKGVTQALRGALAKLSGETRGAFPWARVAQGLTAIVAVSGPRRQMAFA---GPTKE--LLA 324 (369)
T ss_dssp CCEEEEEETTEECTTCBHHHHHHHHHHHHHHHHHHTCCGGGSCHHHHTTTEEEEEEEECCGGGCCBS---STTCC--SBC
T ss_pred CEEEEEEECCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHCCCEEEEEEECCCCCCCCC---CCCCC--CCC
T ss_conf 6237863478748999886886999999999987431113587888752878999998789899807---84747--616
Q ss_pred CH---HHHHHHHHHHHHHHHHH
Q ss_conf 97---99999999978988753
Q gi|254780399|r 310 NP---TIIRNFIIQSIQKAINK 328 (594)
Q Consensus 310 de---~~i~~~i~~~i~~~L~~ 328 (594)
+. ..|...+.+.+...|.+
T Consensus 325 ~~~v~~~v~~~v~~~l~~~l~~ 346 (369)
T 3cwv_A 325 IPGLEEAIRKQLQPLFIELLRE 346 (369)
T ss_dssp CTTHHHHHHHHHHHHHHHHHHT
T ss_pred CHHHHHHHHHHHHHHHHHHHHH
T ss_conf 9879999999999999999997
No 11
>2ior_A Chaperone protein HTPG; heat shock protein, HSP90; HET: ADP; 1.65A {Escherichia coli}
Probab=99.12 E-value=9e-10 Score=88.31 Aligned_cols=145 Identities=24% Similarity=0.301 Sum_probs=94.8
Q ss_pred CCCHHHHHHHHHHHHHHCC------------------CCEEEEEEECCCEEEEEEEECCCCCCHHHHHHHHCCCCCCCCH
Q ss_conf 2697899999998777269------------------9679999980984399999888998898999875024665631
Q gi|254780399|r 20 IERPSIAIKELIENSLDAE------------------SSRVETVIAGGGKSFFQITDNGFGMTSEEIPMAVQRHCTSKIS 81 (594)
Q Consensus 20 i~~~~svVkELveNSlDAg------------------At~I~v~i~~~g~~~i~V~DnG~Gi~~~dl~~~~~rh~TSKi~ 81 (594)
-.+|.-.+||||+||.||- .-.|.|.++..+. .+.|+|||.||+++++..-+..-|.|--+
T Consensus 45 Ys~~~ifLRELIqNA~DA~~k~r~~~~~~~~~~~~~~~~~I~i~~d~~~~-~l~I~DnGiGMt~~el~~~l~tia~S~~~ 123 (235)
T 2ior_A 45 YSNKEIFLRELISNASDAADKLRFRALSNPDLYEGDGELRVRVSFDKDKR-TLTISDNGVGMTRDEVIDHLGTIAKSGTK 123 (235)
T ss_dssp GGGTTHHHHHHHHHHHHHHHHHHHHHTSCGGGGTTCCCCCEEEEEETTTT-EEEEEECSSCCCHHHHHHHHTTCCCTTHH
T ss_pred CCCCCEEEEEHHHHHHHHHHHHHHHHCCCCHHHCCCCCCEEEEEECCCCC-EEEEEECCCCCCHHHHHHHHHHHHHHHHH
T ss_conf 89986453108765999999999987159501058877436888648998-89999777332478866665022023238
Q ss_pred H-----------HHHHCCCCCCCHHHHHHHHHHE-EEEEEEECCCCC--CCEEEEECCCCCCCCCCC-CCCCCCEEEEEH
Q ss_conf 2-----------4411214884048999876202-489998048986--301551101000002110-125675788521
Q gi|254780399|r 82 D-----------DFSNIHTFGFRGEALPSIGAVS-HLTLMSRPPQNN--TGAQIAISGEKISSVRPV-AMNPGTIVEVRD 146 (594)
Q Consensus 82 ~-----------dl~~i~t~GFRGEAL~sIa~vs-~l~i~s~~~~~~--~~~~~~~~~g~~~~~~~~-~~~~GT~V~V~~ 146 (594)
+ |..- .|..|=...|.=.|| +++|.||..++. .+|.....|+......+. ..+.||+|++.
T Consensus 124 ~f~~~~~~~~~~~~~~---IGqFGIGf~S~FmVad~V~V~Trs~~~~~~~~~~w~~~g~~~~~i~~~~~~~~GT~I~L~- 199 (235)
T 2ior_A 124 SFLESLGSDQAKDSQL---IGQFGVGFYSAFIVADKVTVRTRAAGEKPENGVFWESAGEGEYTVADITKEDRGTEITLH- 199 (235)
T ss_dssp HHHHHCCSCHHHHHHH---HTTCCCCGGGGGGTEEEEEEEEECTTSCGGGEEEEEECSSSEEEEEEECCCSCEEEEEEE-
T ss_pred HHHHHHHHCCCCCCCC---CCCCCCCEEEEEECCCEEEEEECCCCCCCCCCEEEEECCCCEEEECCCCCCCCCCEEEEE-
T ss_conf 8987533113344110---023450025553306769998446686766113577458860550678889998889999-
Q ss_pred HHHHHHHHHHCCCCHHHHHHHHHHHHHHHHH
Q ss_conf 0121125431034536899999999999873
Q gi|254780399|r 147 LFFTIPARLNFLKSEQVETNLITDVIRRMAI 177 (594)
Q Consensus 147 LF~N~PvRrkflks~~~e~~~I~~~v~~~aL 177 (594)
| =|--..|+ +...+.++|.+|+-
T Consensus 200 L---ked~~efl-----~~~~lk~iIkkys~ 222 (235)
T 2ior_A 200 L---REGEDEFL-----DDWRVRSIISKYSD 222 (235)
T ss_dssp E---CTTCGGGG-----CHHHHHHHHHHHTT
T ss_pred E---CCCHHHHH-----CHHHHHHHHHHHHH
T ss_conf 8---97317664-----98799999998874
No 12
>2ioq_A Chaperone protein HTPG; heat shock protein, HSP90; 3.50A {Escherichia coli} PDB: 2iop_A
Probab=99.05 E-value=5.2e-09 Score=82.87 Aligned_cols=254 Identities=21% Similarity=0.290 Sum_probs=138.2
Q ss_pred CCCHHHHHHHHHHHHHHCC------------------CCEEEEEEECCCEEEEEEEECCCCCCHHHHHHHHCCCC---CC
Q ss_conf 2697899999998777269------------------96799999809843999998889988989998750246---65
Q gi|254780399|r 20 IERPSIAIKELIENSLDAE------------------SSRVETVIAGGGKSFFQITDNGFGMTSEEIPMAVQRHC---TS 78 (594)
Q Consensus 20 i~~~~svVkELveNSlDAg------------------At~I~v~i~~~g~~~i~V~DnG~Gi~~~dl~~~~~rh~---TS 78 (594)
-.+|---+||||.||.||= .-.|.|.++..+. .+.|+|||.||+++|+...+-.=| |.
T Consensus 25 Ys~~~vflRELisNa~DA~~k~r~~~l~~~~~~~~~~~~~I~I~~d~~~~-tl~i~DnGiGMt~~el~~~LgtIa~Sgt~ 103 (624)
T 2ioq_A 25 YSNKEIFLRELISNASDAADKLRFRALSNPDLYEGDGELRVRVSFDKDKR-TLTISDNGVGMTRDEVIDHLGTIAKSGTK 103 (624)
T ss_dssp SSCTTHHHHHHHHHHHHHHHHHHHHHHTSTTTTTTCCCCCEEEEEETTTT-EEEEEECSCCCCHHHHHHHHHHHCC----
T ss_pred CCCCHHHHHHHHHHHHHHHHHHHHHHCCCCHHCCCCCCCEEEEEECCCCC-EEEEEECCCCCCHHHHHHHHHHHHHHHHH
T ss_conf 88831669999872999999999987159131078888469999759889-89999538888999999876676024179
Q ss_pred C----CHHHH-HHCCCCCCCHHHHHHHHHHE-EEEEEEECCCC--CCCEEEEECCCCCCCCCCCC-CCCCCEEEEEHHHH
Q ss_conf 6----31244-11214884048999876202-48999804898--63015511010000021101-25675788521012
Q gi|254780399|r 79 K----ISDDF-SNIHTFGFRGEALPSIGAVS-HLTLMSRPPQN--NTGAQIAISGEKISSVRPVA-MNPGTIVEVRDLFF 149 (594)
Q Consensus 79 K----i~~dl-~~i~t~GFRGEAL~sIa~vs-~l~i~s~~~~~--~~~~~~~~~~g~~~~~~~~~-~~~GT~V~V~~LF~ 149 (594)
. +.+|- ....-.|--|=.+.|-=-|| ++++.||+.++ ..+|+..-+|+....+.++. .++||+|++.
T Consensus 104 ~f~~~~~~~~~~~~~~IGqFGvGfyS~FmVad~V~v~srs~~~~~~~~~~w~~~g~~~~~i~~~~~~~~GT~I~L~---- 179 (624)
T 2ioq_A 104 SFLESLGSDQAKDSQLIGQFGVGFYSAFIVADKVTVRTRAAGEKPENGVFWESAGEGEYTVADITKEDRGTEITLH---- 179 (624)
T ss_dssp -----------CCTTHHHHHHHHHHHHHHHEEEEEEEEECTTSCGGGEEEEEECSSSCCEEEEECCSSSEEEEEEE----
T ss_pred HHHHHHHHHCCCCCCCCCCCCCCCEECCCCCCEEEEEEEECCCCCCCEEEEEECCCCCEEECCCCCCCCCCEEEEE----
T ss_conf 9999866410244343542321200013337879999722688776417999579871364467767875069973----
Q ss_pred HHHHHHHCCCCHHHH---HHHHHHHHHHHHH--CCCCCEEEEEECCCCEE-----EEE-----CC-CC----CHHHHHHH
Q ss_conf 112543103453689---9999999999873--18997499998798307-----997-----17-88----10489999
Q gi|254780399|r 150 TIPARLNFLKSEQVE---TNLITDVIRRMAI--AYPKVSFTFSTIKSNRY-----KMN-----FQ-ST----NGNFPERI 209 (594)
Q Consensus 150 N~PvRrkflks~~~e---~~~I~~~v~~~aL--~~P~V~f~l~~~~~~~~-----~l~-----~~-~~----~~~l~~ri 209 (594)
||....| -..|.+++.+|+= .+| |.+.-.....+.. .+. ++ +. ...+.+..
T Consensus 180 --------lk~d~~e~l~~~~i~~li~kYs~fi~~P-I~l~~~~~~~~~~~~~~~~iN~~~~~W~~~~~ei~~eey~~fY 250 (624)
T 2ioq_A 180 --------LREGEDEFLDDWRVRSIISKYSDHIALP-VEIEKREEKDGETVISWEKINKAQALWTRNKSEITDEEYKEFY 250 (624)
T ss_dssp --------ECTTCGGGGCHHHHHHHHHHHHTTCSSC-EEEEEEEECSSCEEEEEEECCCCSCTTTSCTTTCCHHHHHHHH
T ss_pred --------ECCCHHHHHHHHHHHHHHHHCCCCCCCC-EEEEECCCCCCCCCCCCCCCCCCCCCCCCCHHHCCHHHHHHHH
T ss_conf --------1650676642999999898526577877-4876434345544444423453343455893443678899998
Q ss_pred HHHHHHHHHHHHHHCCCCC-EEEEEEEEECCCCCC------CCCCHHHHHHHCCCHHHCHHHHHHHHHHHHHHCCCCCCE
Q ss_conf 9732166654310022442-036566662161103------323206677515210007588899998755442799980
Q gi|254780399|r 210 SQVIGEDFINNAVELNEKS-NEITLQGYTGIPTFN------RGNANQFYVFINGRTVQDKFILSTIRTAYAETIPLGRYP 282 (594)
Q Consensus 210 ~~i~G~~~~~~l~~i~~~~-~~~~i~G~is~P~~~------r~~~~~q~ifVNgR~V~~~~l~~AI~~aY~~~l~~g~~P 282 (594)
..+++ .+..-+..+.... +.+.+.|.+=.|... ...+...-+|+|+=.|.+. ..++||. |-
T Consensus 251 k~~~~-~~~~pl~~ih~~~e~~~~~~~llyiP~~~p~~~~~~~~~~~i~LY~krVfIsd~---------~~~lLP~--wl 318 (624)
T 2ioq_A 251 KHIAH-DFNDPLTWSHNRVEGKQEYTSLLYIPSQAPWDMWNRDHKHGLKLYVQRVFIMDD---------AEQFMPN--YL 318 (624)
T ss_dssp HHHHT-CCSCCSCCEEEEEESSSCEEEEEECCSSCCGGGSSSSCCCCEEEEESSCEEEEE---------ECSSSCT--TS
T ss_pred HHHCC-CCCCHHHHHCCCCCCCCEEEEEEECCCCCCHHHHHHHHCCCEEEEEEEEEECCC---------HHHHCCH--HH
T ss_conf 75136-732216551355677611456873477784666523302762899975563165---------5443823--43
Q ss_pred EEEEEEEEEHHHHCCCCC
Q ss_conf 799999960657124757
Q gi|254780399|r 283 VVVLLLEIDPRQVDVNVH 300 (594)
Q Consensus 283 ~~vL~i~i~p~~vDVNVH 300 (594)
+|+.--++...+-.||.
T Consensus 319 -~FvrGVVDS~DLplNvS 335 (624)
T 2ioq_A 319 -RFVRGLIDSSDLPLNVS 335 (624)
T ss_dssp -TTCEEEEEESSSCTTCC
T ss_pred -CCCCEEECCCCCCCCHH
T ss_conf -20221321344684135
No 13
>1yc1_A HSP 86, heat shock protein HSP 90-alpha; cell-cycle, cancer, drug design, cell cycle; HET: 4BC; 1.70A {Homo sapiens} SCOP: d.122.1.1 PDB: 1yc3_A* 1yc4_A*
Probab=99.03 E-value=6.1e-09 Score=82.34 Aligned_cols=143 Identities=23% Similarity=0.339 Sum_probs=89.7
Q ss_pred CCCCHHHHHHHHHHHHHHC------------------CCCEEEEEEECCCEEEEEEEECCCCCCHHHHHHHHCCCCCCCC
Q ss_conf 2269789999999877726------------------9967999998098439999988899889899987502466563
Q gi|254780399|r 19 IIERPSIAIKELIENSLDA------------------ESSRVETVIAGGGKSFFQITDNGFGMTSEEIPMAVQRHCTSKI 80 (594)
Q Consensus 19 vi~~~~svVkELveNSlDA------------------gAt~I~v~i~~~g~~~i~V~DnG~Gi~~~dl~~~~~rh~TSKi 80 (594)
.=.+|--.+||||.||.|| ..-.|.|..+.... .+.|+|||.||+++++..-+..-|.|-=
T Consensus 65 LYS~keIFLRELIsNAsDAi~k~r~~~~~~~~~~~~~~~~~I~i~~d~~~~-tl~I~DnGiGMt~~el~~~lgtIa~Sg~ 143 (264)
T 1yc1_A 65 FYSNKEIFLRELISNSSDALDKIRYETLTDPSKLDSGKELHINLIPNKQDR-TLTIVDTGIGMTKADLINNLGTIAKSGT 143 (264)
T ss_dssp CCSCTTHHHHHHHHHHHHHHHHHHHHHHHCGGGGGGCCCCCEEEEEETTTT-EEEEEECSCCCCHHHHHHHHHSCTTSCH
T ss_pred CCCCCCEEHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCEEEEEECCCCC-EEEEEECCCCCCHHHHHHHCCCHHCCCC
T ss_conf 579975008888857999999999986539522467987369998768888-8999968987779999976165001463
Q ss_pred HH---------HHHHCCCCCCCHHHHHHHHHHE-EEEEEEECCCCCC-CEEEEECCCC-CCCCCCCCCCCCCEEEEEHHH
Q ss_conf 12---------4411214884048999876202-4899980489863-0155110100-000211012567578852101
Q gi|254780399|r 81 SD---------DFSNIHTFGFRGEALPSIGAVS-HLTLMSRPPQNNT-GAQIAISGEK-ISSVRPVAMNPGTIVEVRDLF 148 (594)
Q Consensus 81 ~~---------dl~~i~t~GFRGEAL~sIa~vs-~l~i~s~~~~~~~-~~~~~~~~g~-~~~~~~~~~~~GT~V~V~~LF 148 (594)
.+ |..-|.-||- -+.|-=.|| ++++.||..++.. +|+-.-.++. ......-...+||+|+..
T Consensus 144 ~~f~~~~~~~~d~~~IGqFGV---GFyS~FMVAdkV~V~Trs~~~~~~~w~s~~~g~~~~~~~~~~~~~~GT~I~L~--- 217 (264)
T 1yc1_A 144 KAFMEALQAGADISMIGQFGV---GFYSAYLVAEKVTVITKHNDDEQYAWESSAGGSFTVRTDTGEPMGRGTKVILH--- 217 (264)
T ss_dssp HHHHHHHHTTCCGGGGGGGTC---GGGGHHHHEEEEEEEEECTTSCCEEEEECSTTEEEEEECCSSCCSSEEEEEEE---
T ss_pred HHHHHHHHHCCCCCEECCCCC---CEEEECCCCCEEEEEECCCCCCCCEEEEEECCCEEEEECCCCCCCCCCEEEEE---
T ss_conf 888987540256440000152---21220234775799975899864437864068727996777889999489999---
Q ss_pred HHHHHHHHCCCCHHH---HHHHHHHHHHHHHH
Q ss_conf 211254310345368---99999999999873
Q gi|254780399|r 149 FTIPARLNFLKSEQV---ETNLITDVIRRMAI 177 (594)
Q Consensus 149 ~N~PvRrkflks~~~---e~~~I~~~v~~~aL 177 (594)
||.+.. +...|.++|.+|+=
T Consensus 218 ---------Lk~d~~Efle~~rl~~lIkkYS~ 240 (264)
T 1yc1_A 218 ---------LKEDQTEYLEERRIKEIVKKHSQ 240 (264)
T ss_dssp ---------ECGGGGGGGSHHHHHHHHHHHTT
T ss_pred ---------ECCCHHHHCCHHHHHHHHHHHHH
T ss_conf ---------68872786699899999998763
No 14
>2wer_A ATP-dependent molecular chaperone HSP82; ATPase, cytoplasm, ATP-binding, phosphoprotein, stress response, nucleotide-binding; HET: RDC; 1.60A {Saccharomyces cerevisiae} PDB: 2weq_A* 2wep_A* 1zwh_A* 1zw9_A* 2fxs_A* 3c11_A* 3c0e_A* 2akp_A
Probab=99.03 E-value=3.1e-09 Score=84.47 Aligned_cols=141 Identities=23% Similarity=0.313 Sum_probs=93.0
Q ss_pred CCCHHHHHHHHHHHHHHC------------------CCCEEEEEEECCCEEEEEEEECCCCCCHHHHHHHHCCCCCCCCH
Q ss_conf 269789999999877726------------------99679999980984399999888998898999875024665631
Q gi|254780399|r 20 IERPSIAIKELIENSLDA------------------ESSRVETVIAGGGKSFFQITDNGFGMTSEEIPMAVQRHCTSKIS 81 (594)
Q Consensus 20 i~~~~svVkELveNSlDA------------------gAt~I~v~i~~~g~~~i~V~DnG~Gi~~~dl~~~~~rh~TSKi~ 81 (594)
=.+|.-.+||||.||.|| +.-.|.|.++..+. .+.|+|||.||+++++...+..-+.|.=+
T Consensus 24 Ys~~~iflRELisNa~DA~~k~~~~~~~~~~~~~~~~~~~I~i~~d~~~~-~l~i~DnGiGMt~~el~~~L~ti~~S~t~ 102 (220)
T 2wer_A 24 YSNKEIFLREIVSNASDALDKIRYKSLSDPKQLETEPDLFIRITPKPEQK-VLEIRDSGIGMTKAELINNLGTIAKSGTK 102 (220)
T ss_dssp CSSTTHHHHHHHHHHHHHHHHHHHHHTTCGGGGGGCCCCCEEEEEEGGGT-EEEEEECSCCCCHHHHHHHTTTSCCTTHH
T ss_pred CCCCCEEHHHHHHHHHHHHHHHHHHHCCCCCHHCCCCCCEEEEEECCCCC-EEEEECCCCEECHHHHHHHHHHHHCCCCH
T ss_conf 89975018788867999999999986459501125788458998538887-79996187311389987654434033437
Q ss_pred ---------HHHHHCCCCCCCHHHHHHHHHHE-EEEEEEECCCCCCCEEEEECC--CCCCCCCC--CCCCCCCEEEEEHH
Q ss_conf ---------24411214884048999876202-489998048986301551101--00000211--01256757885210
Q gi|254780399|r 82 ---------DDFSNIHTFGFRGEALPSIGAVS-HLTLMSRPPQNNTGAQIAISG--EKISSVRP--VAMNPGTIVEVRDL 147 (594)
Q Consensus 82 ---------~dl~~i~t~GFRGEAL~sIa~vs-~l~i~s~~~~~~~~~~~~~~~--g~~~~~~~--~~~~~GT~V~V~~L 147 (594)
+|..-|.-|| =-+.|-=.|+ ++++.||..+++ +|.....+ +-.....+ -..++||+|+..
T Consensus 103 ~~~~~~~~~~~~~~IGqFG---IGfyS~FmVad~V~V~Tr~~~~~-~~~W~~~~dg~~~i~~~~~~~~~~~GT~I~L~-- 176 (220)
T 2wer_A 103 AFMEALSAGADVSMIGQFG---VGFYSLFLVADRVQVISKSNDDE-QYIWESNAGGSFTVTLDEVNERIGRGTILRLF-- 176 (220)
T ss_dssp HHHHHHTTTCCGGGGGGGT---CGGGGGGGTEEEEEEEEECTTSC-CEEEEECSSSEEEEEECSSSCCCSSEEEEEEE--
T ss_pred HHHHHCCCCCCCCCCCCCC---EEEEEEEEECCEEEEEECCCCCC-CEEEEECCCCCEEEEEECCCCCCCCCEEEEEE--
T ss_conf 7775301365413035310---04778886317699998359986-30578517997699981147767987799999--
Q ss_pred HHHHHHHHHCCCCHH---HHHHHHHHHHHHHHH
Q ss_conf 121125431034536---899999999999873
Q gi|254780399|r 148 FFTIPARLNFLKSEQ---VETNLITDVIRRMAI 177 (594)
Q Consensus 148 F~N~PvRrkflks~~---~e~~~I~~~v~~~aL 177 (594)
||... .+-..|.++|.+|+=
T Consensus 177 ----------lk~d~~e~l~~~~l~~likkys~ 199 (220)
T 2wer_A 177 ----------LKDDQLEYLEEKRIKEVIKRHSE 199 (220)
T ss_dssp ----------ECTTCGGGGCHHHHHHHHHHHCT
T ss_pred ----------ECCCHHHHCCHHHHHHHHHHHHH
T ss_conf ----------68448876598899999999874
No 15
>1y4s_A Chaperone protein HTPG; HSP90, molecular chaperone, ATPase; HET: ADP; 2.90A {Escherichia coli} PDB: 1y4u_A
Probab=99.01 E-value=4.9e-09 Score=83.03 Aligned_cols=145 Identities=22% Similarity=0.283 Sum_probs=91.0
Q ss_pred CCCHHHHHHHHHHHHHHCC------------------CCEEEEEEECCCEEEEEEEECCCCCCHHHHHHHHCCCC---CC
Q ss_conf 2697899999998777269------------------96799999809843999998889988989998750246---65
Q gi|254780399|r 20 IERPSIAIKELIENSLDAE------------------SSRVETVIAGGGKSFFQITDNGFGMTSEEIPMAVQRHC---TS 78 (594)
Q Consensus 20 i~~~~svVkELveNSlDAg------------------At~I~v~i~~~g~~~i~V~DnG~Gi~~~dl~~~~~rh~---TS 78 (594)
-.+|.-.+||||.||.||- .-.|.|..+... ..++|+|||.||+++|+...+---| |.
T Consensus 25 Ys~~~vflRELisNa~DA~~k~r~~~l~~~~~~~~~~~~~I~i~~d~~~-~~l~i~DnGiGMt~~el~~~lgtIa~Sgt~ 103 (559)
T 1y4s_A 25 YSNKEIFLRELISNASDAADKLRFRALSNPDLYEGDGELRVRVSFDKDK-RTLTISDNGVGMTRDEVIDHLGTIAKSGTK 103 (559)
T ss_dssp GGGTTHHHHHHHHHHHHHHHHHHHHHHHCGGGGCSCCCCCEEEEEETTT-TEEEEEECSSCCCHHHHHHHHSCCSCCCCC
T ss_pred CCCCCHHHHHHHHHHHHHHHHHHHHHCCCCHHCCCCCCCEEEEEECCCC-CEEEEEECCCCCCHHHHHHHHHHHEEHHHH
T ss_conf 6885143888887299999999998614931007898827999973889-989999628889999999851132535189
Q ss_pred C----CHH-HHHHCCCCCCCHHHHHHHHHHE-EEEEEEECCCC--CCCEEEEECCCCCCCCC-CCCCCCCCEEEEEHHHH
Q ss_conf 6----312-4411214884048999876202-48999804898--63015511010000021-10125675788521012
Q gi|254780399|r 79 K----ISD-DFSNIHTFGFRGEALPSIGAVS-HLTLMSRPPQN--NTGAQIAISGEKISSVR-PVAMNPGTIVEVRDLFF 149 (594)
Q Consensus 79 K----i~~-dl~~i~t~GFRGEAL~sIa~vs-~l~i~s~~~~~--~~~~~~~~~~g~~~~~~-~~~~~~GT~V~V~~LF~ 149 (594)
. +.+ .-....-.|.-|=...|-=-|+ ++++.||+.++ ..+|+..-+|+...... ....++||+|+..
T Consensus 104 ~f~~~~~~~~~~~~~~iGqFGvGfyS~FmVa~~V~V~tr~~~~~~~~~~~w~~~g~~~~~~~~~~~~~~GT~I~L~---- 179 (559)
T 1y4s_A 104 SFLESLGSDQAKDSQLIGQFGVGFYSAFIVADKVTVRTRAAGEKPENGVFWESAGEGEYTVADITKEDRGTEITLH---- 179 (559)
T ss_dssp CTTCC--------CCCCSSCCCSGGGHHHHEEEEEEEEECSSSCGGGEEEEEECSSSEEEEEEECCCSCEEEEEEE----
T ss_pred HHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCEEEEEEECCCCCCCCEEEEEECCCCCEEECCCCCCCCCEEEEEE----
T ss_conf 9999845312554454553210012455446679999722787777437999779862584467777787478740----
Q ss_pred HHHHHHHCCCCHHH---HHHHHHHHHHHHHH
Q ss_conf 11254310345368---99999999999873
Q gi|254780399|r 150 TIPARLNFLKSEQV---ETNLITDVIRRMAI 177 (594)
Q Consensus 150 N~PvRrkflks~~~---e~~~I~~~v~~~aL 177 (594)
||-... +...+.+++.+|+=
T Consensus 180 --------lk~~~~efl~~~~l~~li~kys~ 202 (559)
T 1y4s_A 180 --------LREGEDEFLDDWRVRSIISKYSD 202 (559)
T ss_dssp --------ECTTCGGGSCHHHHHHHHHHHHT
T ss_pred --------ECCCHHHHHHHHHHHHHHHHHCC
T ss_conf --------05546766317899999986040
No 16
>2gqp_A Endoplasmin; GRP94, HSP82, HSP90, HTPG, chaperone, ligand, NECA, NPCA, adenosine; HET: PA7 PG4 1PE; 1.50A {Canis lupus familiaris} SCOP: d.122.1.1 PDB: 1tc0_A* 1tbw_A* 1u0z_A* 1u2o_A* 1ysz_A* 1yt0_A* 1yt1_A* 2exl_A* 2fyp_A* 2gfd_A* 1tc6_A* 2h8m_A* 2hch_A* 2hg1_A* 2esa_A*
Probab=98.98 E-value=4.9e-09 Score=83.01 Aligned_cols=142 Identities=24% Similarity=0.343 Sum_probs=87.2
Q ss_pred CCCCHHHHHHHHHHHHHHCC------------------CCEEEEEEECCCEEEEEEEECCCCCCHHHHHHHHCCCCCC--
Q ss_conf 22697899999998777269------------------9679999980984399999888998898999875024665--
Q gi|254780399|r 19 IIERPSIAIKELIENSLDAE------------------SSRVETVIAGGGKSFFQITDNGFGMTSEEIPMAVQRHCTS-- 78 (594)
Q Consensus 19 vi~~~~svVkELveNSlDAg------------------At~I~v~i~~~g~~~i~V~DnG~Gi~~~dl~~~~~rh~TS-- 78 (594)
.=.+|.-.+||||.||.||- .-.|.|..+.. ...+.|+|||.||+++|+..-+..-|-|
T Consensus 29 LYs~~evfLRELiqNa~DA~~k~r~~~~~~~~~~~~~~~~~I~i~~d~~-~~~l~i~DnGiGMt~~el~~~lgtIa~Sgt 107 (236)
T 2gqp_A 29 LYKNKEIFLRELISNASDALDKIRLISLTDENALAGNEELTVKIKCDKE-KNLLHVTDTGVGMTREELVKNLGTIAKSGT 107 (236)
T ss_dssp TTTCTTHHHHHHHHHHHHHHHHHHHHHHHCTTTTTTCCCCCEEEEEETT-TTEEEEEECSCCCCHHHHHHHHHCC-----
T ss_pred CCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCEEEEEECCC-CCEEEEEECCCCCCHHHHHHHHHHHHHCCC
T ss_conf 5699622099998789999999999966494100467771699976588-888999845522159999887676662142
Q ss_pred -----CCHH-------HHHHCCCCCCCHHHHHHHHHHE-EEEEEEECCCCCCCEEEEECCCCCCCC---CCCCCCCCCEE
Q ss_conf -----6312-------4411214884048999876202-489998048986301551101000002---11012567578
Q gi|254780399|r 79 -----KISD-------DFSNIHTFGFRGEALPSIGAVS-HLTLMSRPPQNNTGAQIAISGEKISSV---RPVAMNPGTIV 142 (594)
Q Consensus 79 -----Ki~~-------dl~~i~t~GFRGEAL~sIa~vs-~l~i~s~~~~~~~~~~~~~~~g~~~~~---~~~~~~~GT~V 142 (594)
|+.+ +-.-|.-|| --+.|-=.|+ +++++||..+++ +|....+|+..... .....++||+|
T Consensus 108 ~~f~~~~~~~~~~~~~~~~lIGqFG---VGFyS~FmVAd~V~V~sr~~~~~-~~~W~s~g~~~~~i~~~~~~~~~~GT~I 183 (236)
T 2gqp_A 108 SEFLNKMTEAQEDGQSTSELIGQFG---VGFYSAFLVADKVIVTSKHNNDT-QHIWESDSNEFSVIADPRGNTLGRGTTI 183 (236)
T ss_dssp ----------------CHHHHHHTT---CGGGGGGGTEEEEEEEEECTTSC-CEEEEESSSCEEEEECTTCSCSSSEEEE
T ss_pred HHHHHHHHHHHCCCCCCHHHHHHCC---CCCEEEEEEECEEEEEEECCCCC-CCEEEECCCCCEEEECCCCCCCCCCEEE
T ss_conf 8888765532003453111353257---23057673305599998216787-7459945887179731357778998499
Q ss_pred EEEHHHHHHHHHHHCCCCHHH---HHHHHHHHHHHHHH
Q ss_conf 852101211254310345368---99999999999873
Q gi|254780399|r 143 EVRDLFFTIPARLNFLKSEQV---ETNLITDVIRRMAI 177 (594)
Q Consensus 143 ~V~~LF~N~PvRrkflks~~~---e~~~I~~~v~~~aL 177 (594)
+.. ||.... +...+.++|.+|+=
T Consensus 184 ~L~------------lk~~~~e~l~~~~l~~li~kys~ 209 (236)
T 2gqp_A 184 TLV------------LKEEASDYLELDTIKNLVKKYSQ 209 (236)
T ss_dssp EEE------------ECGGGGGGGCHHHHHHHHHHHHT
T ss_pred EEE------------ECCCCHHHCCHHHHHHHHHHHHH
T ss_conf 999------------88877455799999999999861
No 17
>1ei1_A DNA gyrase B, GYRB; ATPase domain, dimer, isomerase; HET: DNA ANP; 2.30A {Escherichia coli} SCOP: d.14.1.3 d.122.1.2
Probab=98.96 E-value=2e-07 Score=71.52 Aligned_cols=225 Identities=14% Similarity=0.198 Sum_probs=134.2
Q ss_pred CCCHHHHHHHHHHHHHHC----CCCEEEEEEECCCEEEEEEEECCCCCCHH--------HHHHH-HCCCCCCCCHHHHHH
Q ss_conf 269789999999877726----99679999980984399999888998898--------99987-502466563124411
Q gi|254780399|r 20 IERPSIAIKELIENSLDA----ESSRVETVIAGGGKSFFQITDNGFGMTSE--------EIPMA-VQRHCTSKISDDFSN 86 (594)
Q Consensus 20 i~~~~svVkELveNSlDA----gAt~I~v~i~~~g~~~i~V~DnG~Gi~~~--------dl~~~-~~rh~TSKi~~dl~~ 86 (594)
...+..++.|+|-||+|- -|++|.|.+...| .|.|.|||.||+-+ -.+++ +.-|+-||..++-++
T Consensus 32 ~~Gl~~i~~Eil~Na~De~~~g~~~~I~V~i~~dg--sisV~ddGrGIPv~~h~~~~~~~~Elif~~L~tg~nfd~~~~~ 109 (391)
T 1ei1_A 32 GTGLHHMVFEVVDNAIDEALAGHCKEIIVTIHADN--SVSVQDDGRGIPTGIHPEEGVSAAEVIMTVLHAGGKFDDNSYK 109 (391)
T ss_dssp SHHHHHHHHHHHHHHHHHHHTTCCCEEEEEECTTS--CEEEEECSSCCCCSBCTTTSSBHHHHHHHSTTEESCSSSSSCS
T ss_pred CCCCEEEEEEEEECHHHHHCCCCCCEEEEEECCCC--EEEEEECCCCCCCCCCCCCCCCEEEEEEEEEECCCCCCCCCCE
T ss_conf 87220688888884323521499867999992798--2999979986767776666851008999997136777998743
Q ss_pred CCCCCCCHHHHHHHHHHEE-EEEEEECCCCCCCEEEEECCCCCCCCC---CCCCCCCCEEEEEHHHHHHHHHHHCCCCHH
Q ss_conf 2148840489998762024-899980489863015511010000021---101256757885210121125431034536
Q gi|254780399|r 87 IHTFGFRGEALPSIGAVSH-LTLMSRPPQNNTGAQIAISGEKISSVR---PVAMNPGTIVEVRDLFFTIPARLNFLKSEQ 162 (594)
Q Consensus 87 i~t~GFRGEAL~sIa~vs~-l~i~s~~~~~~~~~~~~~~~g~~~~~~---~~~~~~GT~V~V~~LF~N~PvRrkflks~~ 162 (594)
+ |-|--|--+...-+.|. +++.++..+. -|+..++.|...... ......||+|+-. |=-..|-....
T Consensus 110 ~-sgG~nGvGakl~NalS~~f~v~~~~~gk--~~~q~f~~g~~~~~~~~~~~~~~~gT~I~F~------PD~~~F~~~~~ 180 (391)
T 1ei1_A 110 V-SGGLHGVGVSVVNALSQKLELVIQREGK--IHRQIYEHGVPQAPLAVTGETEKTGTMVRFW------PSLETFTNVTE 180 (391)
T ss_dssp S-CSCCSSCHHHHHHHTEEEEEEEEEETTE--EEEEEEETTEESSCCEEEEECSCCEEEEEEE------ECTTTCCSCCS
T ss_pred E-ECCCCCCCEEEEEEEECCEEEEEEECCE--EEEEEEECCEECCCCEEECCCCCCCCEEEEE------ECHHHHCCCCC
T ss_conf 3-1688765427999961555999996998--9999980993978840505757897589999------79788178655
Q ss_pred HHHHHHHHHHHHHHHCCCCCEEEEEECCCCEEEEECCCCCHHHHHHHHHHHHH--HHHHHHHHCCCCCEEEEEEEEECCC
Q ss_conf 89999999999987318997499998798307997178810489999973216--6654310022442036566662161
Q gi|254780399|r 163 VETNLITDVIRRMAIAYPKVSFTFSTIKSNRYKMNFQSTNGNFPERISQVIGE--DFINNAVELNEKSNEITLQGYTGIP 240 (594)
Q Consensus 163 ~e~~~I~~~v~~~aL~~P~V~f~l~~~~~~~~~l~~~~~~~~l~~ri~~i~G~--~~~~~l~~i~~~~~~~~i~G~is~P 240 (594)
-....+.+.++.+|..+|++.+.|+............. +.+.+-+..+-.. ...+..+.+..+..++.+.--+...
T Consensus 181 ~~~~~l~~r~~~~A~l~~gl~i~~~d~~~~~~~~~~~~--~gl~~~~~~l~~~~~~~~~~~~~~~~~~~~~~veva~~~~ 258 (391)
T 1ei1_A 181 FEYEILAKRLRELSFLDSGVSIRLRDKRDGKEDHFHYE--GGIKAFVEYLNKNKTPIHPNIFYFSTEKDGIGVEVALQWN 258 (391)
T ss_dssp CCHHHHHHHHHHHHHHSTTCEEEEEETTTCCEEEECCC--SHHHHHHHHHHHTSCBSSSCCEEEEEEETTEEEEEEEEEB
T ss_pred CCHHHHHHHHHHHHCCCCCCEEEEEEECCCCEEEEECC--CCHHHHHHHHCCCCCCCCCCCEEEEEEECCEEEEEEEEEC
T ss_conf 66999999999985508997799996047826888707--6499999986258876799768999765782899999844
Q ss_pred CCCCCCCHHHHHHHCCCHHH
Q ss_conf 10332320667751521000
Q gi|254780399|r 241 TFNRGNANQFYVFINGRTVQ 260 (594)
Q Consensus 241 ~~~r~~~~~q~ifVNgR~V~ 260 (594)
+ +-...++-|||+-+-.
T Consensus 259 ~---~~~~~~~SfVN~I~T~ 275 (391)
T 1ei1_A 259 D---GFQENIYCFTNNIPQR 275 (391)
T ss_dssp S---SCCEEEEEEETTEECT
T ss_pred C---CCCEEEEEEEEEECCC
T ss_conf 8---8836899986322489
No 18
>1zxm_A TOPO IIA ATPase, DNA topoisomerase II, alpha isozyme; GHKL nucleotide-binding fold; HET: DNA ANP; 1.87A {Homo sapiens} PDB: 1zxn_A*
Probab=98.96 E-value=4.3e-08 Score=76.26 Aligned_cols=161 Identities=15% Similarity=0.108 Sum_probs=106.7
Q ss_pred CCCHHHHHHHHHHHHHH---CC--CCEEEEEEECCCEEEEEEEECCCCCCHH--------HHHHHH-CCCCCCCCHHHHH
Q ss_conf 26978999999987772---69--9679999980984399999888998898--------999875-0246656312441
Q gi|254780399|r 20 IERPSIAIKELIENSLD---AE--SSRVETVIAGGGKSFFQITDNGFGMTSE--------EIPMAV-QRHCTSKISDDFS 85 (594)
Q Consensus 20 i~~~~svVkELveNSlD---Ag--At~I~v~i~~~g~~~i~V~DnG~Gi~~~--------dl~~~~-~rh~TSKi~~dl~ 85 (594)
+.-+...|-|+|.||+| || |+.|.|.|...| ..|.|.|||.||+-+ -+++++ .-||-+|..+|-+
T Consensus 50 ~~GL~~l~~EildNavDe~~~g~~~~~I~V~i~~d~-~sitV~DnGrGIPv~~h~~~~~~~~e~i~t~Lhaggkfd~~~y 128 (400)
T 1zxm_A 50 VPGLYKIFDEILVNAADNKQRDPKMSCIRVTIDPEN-NLISIWNNGKGIPVVEHKVEKMYVPALIFGQLLTSSNYDDDEK 128 (400)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHCTTCCEEEEEEETTT-TEEEEEEESSCCCCSEETTTTEEHHHHHHHSSSEESCCCGGGC
T ss_pred CCEEEEEEEEEEECHHHHHHHCCCCCEEEEEEECCC-CEEEEEECCCCCCEEECCCCCCCCEEEEEEEECCCCCCCCCCC
T ss_conf 870058998999965548865579847999997799-9899998996532002156673210246778413156689862
Q ss_pred HCCCCCCCHHHHHHHHHHE-EEEEEEECCCCCCCEEEEECCCCC----CCCCCCCCCCCCEEEEEHHHHHHHHHHHCCCC
Q ss_conf 1214884048999876202-489998048986301551101000----00211012567578852101211254310345
Q gi|254780399|r 86 NIHTFGFRGEALPSIGAVS-HLTLMSRPPQNNTGAQIAISGEKI----SSVRPVAMNPGTIVEVRDLFFTIPARLNFLKS 160 (594)
Q Consensus 86 ~i~t~GFRGEAL~sIa~vs-~l~i~s~~~~~~~~~~~~~~~g~~----~~~~~~~~~~GT~V~V~~LF~N~PvRrkflks 160 (594)
. .|-|--|--.+.--++| ++++.+...+....|...+..+.. ....+.....||+|+ |.-=|.+-..-.=
T Consensus 129 k-~sgGlhGVG~svvNalS~~~~Vev~~~~~~~~~~q~~~~~~~~~~~~~~~~~~~~~GT~I~----F~PD~~iF~~~~~ 203 (400)
T 1zxm_A 129 K-VTGGRNGYGAKLCNIFSTKFTVETASREYKKMFKQTWMDNMGRAGEMELKPFNGEDYTCIT----FQPDLSKFKMQSL 203 (400)
T ss_dssp C-CCSCCSSCHHHHHHHTEEEEEEEEEETTTTEEEEEEEETTTTEECCCEEEECCSCCEEEEE----EEECGGGGTCSSC
T ss_pred E-EECCCCCCCHHHHHHCCHHHEEEEEECCCEEEEEEECCCCCCCCCCCCCCCCCCCCCEEEE----EECCCCCCCEEEE
T ss_conf 3-6346445252555110341145566302305677510235664554445577899957999----9857440144551
Q ss_pred HHHHHHHHHHHHHHHHHCCCCCEEEE
Q ss_conf 36899999999999873189974999
Q gi|254780399|r 161 EQVETNLITDVIRRMAIAYPKVSFTF 186 (594)
Q Consensus 161 ~~~e~~~I~~~v~~~aL~~P~V~f~l 186 (594)
+.-....+.+.+..+|-.+|++.+.+
T Consensus 204 ~~d~~~~l~~r~~~la~l~~~~~v~~ 229 (400)
T 1zxm_A 204 DKDIVALMVRRAYDIAGSTKDVKVFL 229 (400)
T ss_dssp CHHHHHHHHHHHHHHHHHSSSCEEEE
T ss_pred CHHHHHHHHHHHHHHCCCCCCEEEEE
T ss_conf 58999998877898627777418981
No 19
>2cg9_A ATP-dependent molecular chaperone HSP82; chaperone complex, HSP90, heat shock protein, ATP-binding, heat shock, nucleotide-binding, acetylation; HET: ATP; 3.1A {Saccharomyces cerevisiae}
Probab=98.94 E-value=8.2e-09 Score=81.44 Aligned_cols=142 Identities=25% Similarity=0.344 Sum_probs=87.7
Q ss_pred CCCCHHHHHHHHHHHHHHC----------------CCC--EEEEEEECCCEEEEEEEECCCCCCHHHHHHHHCCCCCC--
Q ss_conf 2269789999999877726----------------996--79999980984399999888998898999875024665--
Q gi|254780399|r 19 IIERPSIAIKELIENSLDA----------------ESS--RVETVIAGGGKSFFQITDNGFGMTSEEIPMAVQRHCTS-- 78 (594)
Q Consensus 19 vi~~~~svVkELveNSlDA----------------gAt--~I~v~i~~~g~~~i~V~DnG~Gi~~~dl~~~~~rh~TS-- 78 (594)
.=.+|---+||||.||.|| +.. .|.|..+... ..++|+|||.||+++|+...+-.=|-|
T Consensus 23 LYS~~evFlRELisNa~DAi~k~r~~~l~~~~~~~~~~~~~I~i~~d~~~-~tl~i~D~GiGMt~~e~~~~lgtIa~Sgt 101 (677)
T 2cg9_A 23 VYSNKEIFLRELISNASDALDKIRYKSLSDPKQLETEPDLFIRITPKPEQ-KVLEIRDSGIGMTKAELINNLGTIAKSGT 101 (677)
T ss_dssp CCSCTTHHHHHHHHHHHHHHHHHHHHTSSCTTTTTTCCCCCEEEEEEGGG-TEEEEEECSCCCCHHHHHGGGSSSSSCTT
T ss_pred CCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCHHCCCCCCCEEEEEECCCC-CEEEEEECCCCCCHHHHHHHHHHHHHHHH
T ss_conf 57984164998886299999999988536912116788606999975888-98999951888899999998777711425
Q ss_pred -----CCH--HHHHHCCCCCCCHHHHHHHHHHE-EEEEEEECCCCCCCEEEEECCCC--CCCCCC--CCCCCCCEEEEEH
Q ss_conf -----631--24411214884048999876202-48999804898630155110100--000211--0125675788521
Q gi|254780399|r 79 -----KIS--DDFSNIHTFGFRGEALPSIGAVS-HLTLMSRPPQNNTGAQIAISGEK--ISSVRP--VAMNPGTIVEVRD 146 (594)
Q Consensus 79 -----Ki~--~dl~~i~t~GFRGEAL~sIa~vs-~l~i~s~~~~~~~~~~~~~~~g~--~~~~~~--~~~~~GT~V~V~~ 146 (594)
++. .|-.-|.-||- .+.|-=-|| ++++.||+.+++ +|.....++. .....+ ...+.||+|+..
T Consensus 102 ~~f~~~~~~~~~~~~IGqFGv---GfyS~FmVad~V~v~t~~~~~~-~~~w~~~~~~~~~~~~~~~~~~~~~GT~I~L~- 176 (677)
T 2cg9_A 102 KAFMEALSAGADVSMIGQFGV---GFYSLFLVADRVQVISKSNDDE-QYIWESNAGGSFTVTLDEVNERIGRGTILRLF- 176 (677)
T ss_dssp HHHHSCCCSSCCCCCCCCTTC---TTGGGGGTEEEEEEEEECTTSC-EEEEEECSSSEEEEEECCSSCCCSSEEEEEEE-
T ss_pred HHHHHHHHCCCCCCHHCCCCC---CCEEEEEEECEEEEEEECCCCC-CCEEEEECCCCEEEEEECCCCCCCCCEEEEEE-
T ss_conf 999998545786012304761---0146788616379997068888-72799963897079840345567772489999-
Q ss_pred HHHHHHHHHHCCCCHH---HHHHHHHHHHHHHHH
Q ss_conf 0121125431034536---899999999999873
Q gi|254780399|r 147 LFFTIPARLNFLKSEQ---VETNLITDVIRRMAI 177 (594)
Q Consensus 147 LF~N~PvRrkflks~~---~e~~~I~~~v~~~aL 177 (594)
+|... .+...|.++|.+|+=
T Consensus 177 -----------lk~~~~e~~~~~~l~~ii~kys~ 199 (677)
T 2cg9_A 177 -----------LKDDQLEYLEEKRIKEVIKRHSE 199 (677)
T ss_dssp -----------ECTTGGGGGCHHHHHHHHHHHST
T ss_pred -----------ECCCHHHHHHHHHHHHHHHHHCC
T ss_conf -----------37877877508899999998435
No 20
>1qy5_A Endoplasmin; GRP94, NECA, HSP90, chaperone; HET: NEC; 1.75A {Canis lupus familiaris} SCOP: d.122.1.1 PDB: 1qy8_A* 1qye_A* 1u0y_A* 1yt2_A*
Probab=98.92 E-value=4.8e-09 Score=83.08 Aligned_cols=144 Identities=24% Similarity=0.360 Sum_probs=90.8
Q ss_pred CCCHHHHHHHHHHHHHHCC------------------CCEEEEEEECCCEEEEEEEECCCCCCHHHHHHHHCCCCCC---
Q ss_conf 2697899999998777269------------------9679999980984399999888998898999875024665---
Q gi|254780399|r 20 IERPSIAIKELIENSLDAE------------------SSRVETVIAGGGKSFFQITDNGFGMTSEEIPMAVQRHCTS--- 78 (594)
Q Consensus 20 i~~~~svVkELveNSlDAg------------------At~I~v~i~~~g~~~i~V~DnG~Gi~~~dl~~~~~rh~TS--- 78 (594)
-.+|.-.+||||.||.||- .-.|.|..+.. ...+.|+|||.||++++|..-+..-|-|
T Consensus 26 Ys~~eiflRELisNa~DA~~k~r~~~~~~~~~~~~~~~~~I~i~~d~~-~~~l~i~DnGiGMt~~el~~~LgtIa~Sgt~ 104 (269)
T 1qy5_A 26 YKNKEIFLRELISNASDALDKIRLISLTDENALAGNEELTVKIKCDKE-KNLLHVTDTGVGMTREELVKNLGTIAKSGTS 104 (269)
T ss_dssp TTCTTHHHHHHHHHHHHHHHHHHHHHHHCTTTTTTCCCCCEEEEEETT-TTEEEEEECSCCCCHHHHHHHHHSCCSHHHH
T ss_pred CCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCEEEEECCCC-CCEEEEEECCCCCCHHHHHHHHHHHHCCCHH
T ss_conf 588502188898769999999999855495223688883588412688-7489998276333599999887766310179
Q ss_pred C----CH----H---HHHHCCCCCCCHHHHHHHHHHE-EEEEEEECCCCCCCEEEEECCCCCCCCCC---CCCCCCCEEE
Q ss_conf 6----31----2---4411214884048999876202-48999804898630155110100000211---0125675788
Q gi|254780399|r 79 K----IS----D---DFSNIHTFGFRGEALPSIGAVS-HLTLMSRPPQNNTGAQIAISGEKISSVRP---VAMNPGTIVE 143 (594)
Q Consensus 79 K----i~----~---dl~~i~t~GFRGEAL~sIa~vs-~l~i~s~~~~~~~~~~~~~~~g~~~~~~~---~~~~~GT~V~ 143 (594)
+ +. + +..-|.-|| .-..|-=.|+ +++++||..++. +++...+|+....... -..++||+|+
T Consensus 105 ~f~~~~~~~~~~~~~~~~~iGqFG---vGfyS~FmVAd~V~V~sr~~~~~-~~~W~s~g~~~~~~~~~~~~~~~rGT~I~ 180 (269)
T 1qy5_A 105 EFLNKMTEAQEDGQSTSELIGQFG---VGFYSAFLVADKVIVTSKHNNDT-QHIWESDSNEFSVIADPRGNTLGRGTTIT 180 (269)
T ss_dssp HHHHHHHHHHHHTCCCHHHHHHTT---CGGGGGGGTEEEEEEEEECTTSC-CEEEEECSSCEEEEECTTCSCSSSEEEEE
T ss_pred HHHHHHHHCCCCCCCCHHHHHHCC---CCEEEEEEEEEEEEEEEECCCCC-CCEEEECCCCCEEEECCCCCCCCCCEEEE
T ss_conf 999863421234431022353257---42178898624899997148887-76799579971786156677668864999
Q ss_pred EEHHHHHHHHHHHCCCCHHHHH---HHHHHHHHHHH--HCCC
Q ss_conf 5210121125431034536899---99999999987--3189
Q gi|254780399|r 144 VRDLFFTIPARLNFLKSEQVET---NLITDVIRRMA--IAYP 180 (594)
Q Consensus 144 V~~LF~N~PvRrkflks~~~e~---~~I~~~v~~~a--L~~P 180 (594)
.. ||....|+ ..+.++|.+|+ +.+|
T Consensus 181 L~------------Lk~d~~efl~~~~l~~ii~kys~fi~~P 210 (269)
T 1qy5_A 181 LV------------LKEEASDYLELDTIKNLVKKYSQFINFP 210 (269)
T ss_dssp EE------------ECGGGGGGGSHHHHHHHHHTTCTTCSSC
T ss_pred EE------------ECCCHHHHCCHHHHHHHHHHHHHCCCCC
T ss_conf 99------------8771455369999999999885176868
No 21
>3peh_A Endoplasmin homolog; structural genomics, structural genomics consortium, SGC, HE protein, chaperone, ATP binding; HET: IBD; 2.75A {Plasmodium falciparum 3D7} PDB: 3pej_A*
Probab=98.87 E-value=2.5e-08 Score=77.95 Aligned_cols=141 Identities=20% Similarity=0.302 Sum_probs=88.6
Q ss_pred CCCHHHHHHHHHHHHHHCC------------------CCEEEEEEECCCEEEEEEEECCCCCCHHHHHHHHCC----CCC
Q ss_conf 2697899999998777269------------------967999998098439999988899889899987502----466
Q gi|254780399|r 20 IERPSIAIKELIENSLDAE------------------SSRVETVIAGGGKSFFQITDNGFGMTSEEIPMAVQR----HCT 77 (594)
Q Consensus 20 i~~~~svVkELveNSlDAg------------------At~I~v~i~~~g~~~i~V~DnG~Gi~~~dl~~~~~r----h~T 77 (594)
-.+|.-.+||||.||.||- .-.|.|.++.. ...+.|+|||.||+++|+...+-. ++.
T Consensus 44 YS~keIFLRELIsNAsDA~~K~r~~~~~~~~~~~~~~~~~I~i~~D~~-~~~l~I~DnGIGMt~~el~~~LgtIa~Sgt~ 122 (281)
T 3peh_A 44 YTQKEVFLRELISNAADALEKIRFLSLSDESVLGEEKKLEIRISANKE-KNILSITDTGIGMTKVDLINNLGTIAKSGTS 122 (281)
T ss_dssp TTCGGGHHHHHHHHHHHHHHHHHHHHTTCGGGGTTCCCCCEEEEEETT-TTEEEEEECSCCCCHHHHHHHHHHHHHSCHH
T ss_pred CCCCCHHHHHHHHHHHHHHHHHHHHHCCCCHHCCCCCCEEEEEEECCC-CCEEEEEECCCCCCHHHHHHHHHHHCCCCHH
T ss_conf 699644177788679999999999973692111788762699887399-9989999798156789999775331343438
Q ss_pred CCC---H---HHHHHCCCCCCCHHHHHHHHHHE-EEEEEEECCCCCCCEEEEECCCCCCCCC----CCCCCCCCEEEEEH
Q ss_conf 563---1---24411214884048999876202-4899980489863015511010000021----10125675788521
Q gi|254780399|r 78 SKI---S---DDFSNIHTFGFRGEALPSIGAVS-HLTLMSRPPQNNTGAQIAISGEKISSVR----PVAMNPGTIVEVRD 146 (594)
Q Consensus 78 SKi---~---~dl~~i~t~GFRGEAL~sIa~vs-~l~i~s~~~~~~~~~~~~~~~g~~~~~~----~~~~~~GT~V~V~~ 146 (594)
+-+ . +|..-|.-||- -..|.=.|| ++++.||..+++ ++...-+++..-.+. .....+||.|+..
T Consensus 123 ~f~~~~~~~~~d~~lIGqFGV---GFySaFmVAdkV~V~Tk~~~~~-~~~w~s~~~g~yti~~~~~~~~~~rGT~I~L~- 197 (281)
T 3peh_A 123 NFLEAISKSGGDMSLIGQFGV---GFYSAFLVADKVIVYTKNNDDE-QYIWESTADAKFTIYKDPRGATLKRGTRISLH- 197 (281)
T ss_dssp HHHHHHHHTTCCSTTTTTTTC---GGGGGGGTEEEEEEEEECTTSC-CEEEEEETTSCEEEEECTTCSTTSSEEEEEEE-
T ss_pred HHHHHHHHCCCCHHHHHHCCC---CEEEEEEECCEEEEEECCCCCC-CEEEEEECCCCCEEEECCCCCCCCCCEEEEEE-
T ss_conf 888764412552334432031---2267764067799995479976-20899978998678643556556776389998-
Q ss_pred HHHHHHHHHHCCCCHHHH---HHHHHHHHHHHHH
Q ss_conf 012112543103453689---9999999999873
Q gi|254780399|r 147 LFFTIPARLNFLKSEQVE---TNLITDVIRRMAI 177 (594)
Q Consensus 147 LF~N~PvRrkflks~~~e---~~~I~~~v~~~aL 177 (594)
||.+..| -..+.++|.+|+=
T Consensus 198 -----------Lk~d~~efl~~~~l~~likkys~ 220 (281)
T 3peh_A 198 -----------LKEDATNLLNDKKLMDLISKYSQ 220 (281)
T ss_dssp -----------ECGGGGGGGSHHHHHHHHHHHTT
T ss_pred -----------ECCHHHHHHCHHHHHHHHHHHCC
T ss_conf -----------56606766199999999998414
No 22
>1kij_A DNA gyrase subunit B; topoisomerase, gyrase B-coumarin complex; HET: DNA NOV; 2.30A {Thermus thermophilus} SCOP: d.14.1.3 d.122.1.2
Probab=98.87 E-value=5.1e-07 Score=68.51 Aligned_cols=223 Identities=15% Similarity=0.222 Sum_probs=127.4
Q ss_pred CCCHHHHHHHHHHHHHHC---C-CCEEEEEEECCCEEEEEEEECCCCCCHHH--------HHHH-HCCCCCCCCHHHHHH
Q ss_conf 269789999999877726---9-96799999809843999998889988989--------9987-502466563124411
Q gi|254780399|r 20 IERPSIAIKELIENSLDA---E-SSRVETVIAGGGKSFFQITDNGFGMTSEE--------IPMA-VQRHCTSKISDDFSN 86 (594)
Q Consensus 20 i~~~~svVkELveNSlDA---g-At~I~v~i~~~g~~~i~V~DnG~Gi~~~d--------l~~~-~~rh~TSKi~~dl~~ 86 (594)
...+...+.|+|.||+|- | |++|.|.+...| .|.|.|||.||+-+- .+++ +..|+.||..+|-++
T Consensus 30 ~~gl~~i~~Eil~Na~De~~~~~~~~I~V~i~~dg--~isV~ddGrGIPv~~h~~~~~~~~e~i~~~L~tg~nfd~~~~k 107 (390)
T 1kij_A 30 VEGYHHLFKEILDNAVDEALAGYATEILVRLNEDG--SLTVEDNGRGIPVDLMPEEGKPAVEVIYNTLHSGGKFEQGAYK 107 (390)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTTSCCEEEEEECTTS--CEEEEECSSCCCCSEETTTTEEHHHHHHHSSCEESGGGGSSCC
T ss_pred CCCCEEEEEEEEECHHHHHCCCCCCEEEEEECCCC--EEEEEECCCCEECCCCCCCCCCEEEEEEEEECCCCCCCCCCCC
T ss_conf 87221788766685666743699966999996998--5999988872664786677971019999898456765788753
Q ss_pred CCCCCCCHHHHHHHHHHE-EEEEEEECCCCCCCEEEEECCCCCCCC-CCC----CCCCCCEEEEEHHHHHHHHHHHCCCC
Q ss_conf 214884048999876202-489998048986301551101000002-110----12567578852101211254310345
Q gi|254780399|r 87 IHTFGFRGEALPSIGAVS-HLTLMSRPPQNNTGAQIAISGEKISSV-RPV----AMNPGTIVEVRDLFFTIPARLNFLKS 160 (594)
Q Consensus 87 i~t~GFRGEAL~sIa~vs-~l~i~s~~~~~~~~~~~~~~~g~~~~~-~~~----~~~~GT~V~V~~LF~N~PvRrkflks 160 (594)
+ |-|--|-.....-+.| .++++++..+. .|...+..|..... .+. ....||+|+-. -=|.|-. .
T Consensus 108 ~-sgG~nGvGa~l~NalS~~f~v~v~~~~~--~~~~~~~~g~~~~~~~~~~~~~~~~~gT~I~F~----PD~~iF~---~ 177 (390)
T 1kij_A 108 V-SGGLHGVGASVVNALSEWTVVEVFREGK--HHRIAFSRGEVTEPLRVVGEAPRGKTGTRVTFK----PDPEIFG---N 177 (390)
T ss_dssp C-CSCSSTTSHHHHHHTEEEEEEEEEETTE--EEEEEEETTEEEEEEEEEEECGGGCCEEEEEEE----ECHHHHT---T
T ss_pred C-CCCCCCCCCHHHHHCCHHEEEEEEECCE--EEEEEEECCCCCCCCEECCCCCCCCCEEEEEEE----ECHHHHC---C
T ss_conf 0-2675764427652325203899980433--799998488365772021667889980799999----5868745---6
Q ss_pred HHHHHHHHHHHHHHHHHCCCCCEEEEEECCCCEEEEECCCCCHHHHHHHHHHHHHH--HHHHHHHCCCCCEEEEEEEEEC
Q ss_conf 36899999999999873189974999987983079971788104899999732166--6543100224420365666621
Q gi|254780399|r 161 EQVETNLITDVIRRMAIAYPKVSFTFSTIKSNRYKMNFQSTNGNFPERISQVIGED--FINNAVELNEKSNEITLQGYTG 238 (594)
Q Consensus 161 ~~~e~~~I~~~v~~~aL~~P~V~f~l~~~~~~~~~l~~~~~~~~l~~ri~~i~G~~--~~~~l~~i~~~~~~~~i~G~is 238 (594)
.......+...+++.|..+|.+.+.+.....+........ +.+.+....+.... +.+...........+.+.-.+.
T Consensus 178 ~~~~~~~i~~r~~~~a~l~~gl~i~~~d~~~~~~~~~~~~--~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~ 255 (390)
T 1kij_A 178 LRFDPSKIRARLREVAYLVAGLKLVFQDRQHGKEEVFLDK--GGVASFAKALAEGEDLLYEKPFLIRGTHGEVEVEVGFL 255 (390)
T ss_dssp CCCCHHHHHHHHHHHHHHTTTCEEEEEEGGGTEEEEECCT--THHHHHHHHHTTTSCBSCSSCEEEEEEETTEEEEEEEE
T ss_pred CCCCHHHHHHHHHHHHHHCCCCEEEEECCCCCCEEEEECC--CCHHHHHHHHCCCCCCCCCCCCEECCCCCEEEEEEEEE
T ss_conf 6333899988889887533884675101678802322227--62677767530477613442101023332035788630
Q ss_pred CCCCCCCCCHHHHHHHCCCHH
Q ss_conf 611033232066775152100
Q gi|254780399|r 239 IPTFNRGNANQFYVFINGRTV 259 (594)
Q Consensus 239 ~P~~~r~~~~~q~ifVNgR~V 259 (594)
. +......|.-|||+-+-
T Consensus 256 ~---~~~~~~~~~SfVN~I~T 273 (390)
T 1kij_A 256 H---TQGYNAEILTYANMIPT 273 (390)
T ss_dssp E---BSSSCCEEEEEETTEEC
T ss_pred C---CCCCCEEEEEEEEEEEC
T ss_conf 3---79876578988635887
No 23
>3ied_A Heat shock protein; HSP90, chaperone, structural genomics, structural genomics consortium, SGC, stress response; HET: AN2; 2.01A {Plasmodium falciparum 3D7}
Probab=98.84 E-value=3.1e-08 Score=77.25 Aligned_cols=140 Identities=24% Similarity=0.254 Sum_probs=89.7
Q ss_pred CCCHHHHHHHHHHHHHHCC------------------------------------------------------CCEEEEE
Q ss_conf 2697899999998777269------------------------------------------------------9679999
Q gi|254780399|r 20 IERPSIAIKELIENSLDAE------------------------------------------------------SSRVETV 45 (594)
Q Consensus 20 i~~~~svVkELveNSlDAg------------------------------------------------------At~I~v~ 45 (594)
=.++---+||||.||.||- .-.|.|.
T Consensus 45 YS~keIFLRELISNAsDAl~K~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~I~I~ 124 (272)
T 3ied_A 45 YTDKDVFLRELISNASDACDKKRIILENNKLIKDAEVVTNEEIKNETEKEKTENVNESTDKKENVEEEKNDIKKLIIKIK 124 (272)
T ss_dssp TCCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC--------------------------------CGGGGCCEEEE
T ss_pred CCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEE
T ss_conf 68874107778865999999998764147311231002321001233222222222122221121112466667349988
Q ss_pred EECCCEEEEEEEECCCCCCHHHHHHHHCCCCCCC-------CH---HHHHHCCCCCCCHHHHHHHHHHE-EEEEEEECCC
Q ss_conf 9809843999998889988989998750246656-------31---24411214884048999876202-4899980489
Q gi|254780399|r 46 IAGGGKSFFQITDNGFGMTSEEIPMAVQRHCTSK-------IS---DDFSNIHTFGFRGEALPSIGAVS-HLTLMSRPPQ 114 (594)
Q Consensus 46 i~~~g~~~i~V~DnG~Gi~~~dl~~~~~rh~TSK-------i~---~dl~~i~t~GFRGEAL~sIa~vs-~l~i~s~~~~ 114 (594)
++..... |.|+|||.||+++||..-+..-|-|- +. +|..-|.-||- .+.|-=-|+ +|+|.||..+
T Consensus 125 ~Dk~~~t-ltI~DnGIGMt~~el~~~LgTIa~Sgt~~F~~~l~~~~~~~~lIGqFGV---GFySaFmVAdkV~V~Tk~~~ 200 (272)
T 3ied_A 125 PDKEKKT-LTITDNGIGMDKSELINNLGTIAQSGTAKFLKQIEEGKADSNLIGQFGV---GFYSSFLVSNRVEVYTKKED 200 (272)
T ss_dssp EETTTTE-EEEEECSCCCCHHHHHHHTTCSCCHHHHHHHHHHHTTSSCTTCGGGSCC---GGGGGGGTEEEEEEEEESSS
T ss_pred ECCCCCE-EEEEECCEEECHHHHHHHHCCCCCCCHHHHHHHHHCCCCCCCHHCCCCC---CEEEEEEECCEEEEEECCCC
T ss_conf 7587898-9999433234289998773555646539999864214443220123575---41788876068999975788
Q ss_pred CCCCEEEEECCCCCCCCCCC---------CCCCCCEEEEEHHHHHHHHHHHCCCCHHHH---HHHHHHHHHHHHH
Q ss_conf 86301551101000002110---------125675788521012112543103453689---9999999999873
Q gi|254780399|r 115 NNTGAQIAISGEKISSVRPV---------AMNPGTIVEVRDLFFTIPARLNFLKSEQVE---TNLITDVIRRMAI 177 (594)
Q Consensus 115 ~~~~~~~~~~~g~~~~~~~~---------~~~~GT~V~V~~LF~N~PvRrkflks~~~e---~~~I~~~v~~~aL 177 (594)
.+|+...+|+..-.+.++ ...+||+|+.. ||....| ...|.++|.+|+-
T Consensus 201 --~~~~W~S~g~g~y~i~~~~~~~~~~~~~~~rGT~I~L~------------Lked~~efl~~~~lk~lIkkYs~ 261 (272)
T 3ied_A 201 --QIYRWSSDLKGSFSVNEIKKYDQEYDDIKGSGTKIILH------------LKEECDEYLEDYKLKELIKKYSE 261 (272)
T ss_dssp --CEEEEEECSSSEEEEEECTTCTTCC--CCSSEEEEEEE------------ECGGGGGGGSHHHHHHHHHHHCT
T ss_pred --CEEEEEECCCCCEEEEECCCCCCCCCCCCCCCEEEEEE------------ECCCHHHHCCHHHHHHHHHHHHH
T ss_conf --41688755998568864433455556779997089999------------89770676598899999998860
No 24
>3fv5_A DNA topoisomerase 4 subunit B; topoisomerase IV B subunit complex, antibiotic resistance, ATP-binding, nucleotide-binding; HET: DNA 1EU; 1.80A {Escherichia coli} PDB: 1s14_A*
Probab=98.83 E-value=1.3e-07 Score=72.74 Aligned_cols=161 Identities=23% Similarity=0.340 Sum_probs=108.9
Q ss_pred CHHHHHHHHHHHHHHC----CCCEEEEEEECCCEEEEEEEECCCCCCHHH--------HHHH-HCCCCCCCCHHHHHHCC
Q ss_conf 9789999999877726----996799999809843999998889988989--------9987-50246656312441121
Q gi|254780399|r 22 RPSIAIKELIENSLDA----ESSRVETVIAGGGKSFFQITDNGFGMTSEE--------IPMA-VQRHCTSKISDDFSNIH 88 (594)
Q Consensus 22 ~~~svVkELveNSlDA----gAt~I~v~i~~~g~~~i~V~DnG~Gi~~~d--------l~~~-~~rh~TSKi~~dl~~i~ 88 (594)
.+...+.|+|.||+|- .|+.|.|.+...|. |.|.|||.||+-+- .+++ +..|+.+|..++-+.+
T Consensus 17 gl~hl~~EildNaiDe~~~g~~~~i~v~~~~d~s--itV~d~GrGIPv~~h~~~~~~~~e~i~t~l~ag~~fd~~~~k~- 93 (201)
T 3fv5_A 17 RPNHLGQEVIDNSVDEALAGHAKRVDVILHADQS--LEVIDDGRGMPVDIHPEEGVPAVELILCRLHAGGKFSNKNYQF- 93 (201)
T ss_dssp STHHHHHHHHHHHHHHHHTTCCSEEEEEECTTSC--EEEEECSSCCCCSBCTTCSSBHHHHHHHCC--------------
T ss_pred CCCEEEEEEEECCHHHHHCCCCCEEEEEEECCCC--EEEEECCCCEEEEECCCCCCCEEEEEEEEEECCCCCCCCCCCC-
T ss_conf 8770786888813548754898379999918980--9999978964685867789714599999970357678876411-
Q ss_pred CCCCCHHHHHHHHHHE-EEEEEEECCCCCCCEEEEECCCCCCCC----CCCC-CCCCCEEEEEHHHHHHHHHHHCCCCHH
Q ss_conf 4884048999876202-489998048986301551101000002----1101-256757885210121125431034536
Q gi|254780399|r 89 TFGFRGEALPSIGAVS-HLTLMSRPPQNNTGAQIAISGEKISSV----RPVA-MNPGTIVEVRDLFFTIPARLNFLKSEQ 162 (594)
Q Consensus 89 t~GFRGEAL~sIa~vs-~l~i~s~~~~~~~~~~~~~~~g~~~~~----~~~~-~~~GT~V~V~~LF~N~PvRrkflks~~ 162 (594)
|-|--|=-++..-++| .+++.++..+. -|...++.|..... .++. ...||+|+-. -=|.| | ....
T Consensus 94 sgG~~GvG~~~vNalS~~~~v~v~r~g~--~~~q~f~~g~~~~~~~~i~~~~~~~~gT~I~F~----PD~~i--F-~~~~ 164 (201)
T 3fv5_A 94 SGGLHGVGISVVNALSKRVEVNVRRDGQ--VYNIAFENGEKVQDLQVVGTCGKRNTGTSVHFW----PDETF--F-DSPR 164 (201)
T ss_dssp --------CHHHHHTEEEEEEEEEETTE--EEEEEEETTEEEEEEEEEEECCTTCCEEEEEEE----ECGGG--S-SCCC
T ss_pred CCCCCCCCCEEEEEECCCEEEEEECCCE--EEEEEEECCCCCCCCEEEECCCCCCCEEEEEEE----CCHHH--C-CCCE
T ss_conf 3775760523447651616999941898--999998399306763487414678984999997----88432--3-7558
Q ss_pred HHHHHHHHHHHHHHHCCCCCEEEEEECCCCEE
Q ss_conf 89999999999987318997499998798307
Q gi|254780399|r 163 VETNLITDVIRRMAIAYPKVSFTFSTIKSNRY 194 (594)
Q Consensus 163 ~e~~~I~~~v~~~aL~~P~V~f~l~~~~~~~~ 194 (594)
-....|.+.+++.|..+|++.+.|+....+..
T Consensus 165 ~~~d~l~~rl~~~A~L~~Gl~i~~~Der~~~~ 196 (201)
T 3fv5_A 165 FSVSRLTHVLKAKAVLCPGVEITFKDEINNTE 196 (201)
T ss_dssp CCHHHHHHHHHHHHHHSTTCEEEEEETTTTEE
T ss_pred ECHHHHHHHHHHHHCCCCCCEEEEEECCCCCE
T ss_conf 97999999999996047997899998478968
No 25
>1s16_A Topoisomerase IV subunit B; two-domain protein complexed with ADPNP; HET: ANP; 2.10A {Escherichia coli} SCOP: d.14.1.3 d.122.1.2
Probab=98.78 E-value=5.1e-07 Score=68.55 Aligned_cols=177 Identities=20% Similarity=0.298 Sum_probs=113.4
Q ss_pred CHHHHHHHHHHHHHHC----CCCEEEEEEECCCEEEEEEEECCCCCCHH--------HHHHH-HCCCCCCCCHHHHHHCC
Q ss_conf 9789999999877726----99679999980984399999888998898--------99987-50246656312441121
Q gi|254780399|r 22 RPSIAIKELIENSLDA----ESSRVETVIAGGGKSFFQITDNGFGMTSE--------EIPMA-VQRHCTSKISDDFSNIH 88 (594)
Q Consensus 22 ~~~svVkELveNSlDA----gAt~I~v~i~~~g~~~i~V~DnG~Gi~~~--------dl~~~-~~rh~TSKi~~dl~~i~ 88 (594)
.+...+.|+|.||+|- -|++|.|.+...| .|.|.|||.||+-+ -.+++ +.-|+-||..++-+. .
T Consensus 31 gl~~~~~EildNavDe~~~~~~~~I~V~i~~dg--~isV~dnGrGIPv~~h~~~~~~~~elif~~L~tg~nfd~~~~k-~ 107 (390)
T 1s16_A 31 RPNHLGQEVIDNSVDEALAGHAKRVDVILHADQ--SLEVIDDGRGMPVDIHPEEGVPAVELILCRLHAGGKFSNKNYQ-F 107 (390)
T ss_dssp STHHHHHHHHHHHHHHHHTTCCSEEEEEECTTS--CEEEEECSSCCCCSBCTTTCSBHHHHHHHCTTEESCSSSSSCS-S
T ss_pred CCCEEEEEEEECCHHHHHCCCCCEEEEEECCCC--EEEEEECCCCEEECCCCCCCCCCEEEEEEEEECCCCCCCCCCC-E
T ss_conf 852078699874650674299967999991898--6999988995000456566877138889876036767887742-3
Q ss_pred CCCCCHHHHHHHHHHE-EEEEEEECCCCCCCEEEEECCCCCCCCC----CCC-CCCCCEEEEEHHHHHHHHHHHCCCCHH
Q ss_conf 4884048999876202-4899980489863015511010000021----101-256757885210121125431034536
Q gi|254780399|r 89 TFGFRGEALPSIGAVS-HLTLMSRPPQNNTGAQIAISGEKISSVR----PVA-MNPGTIVEVRDLFFTIPARLNFLKSEQ 162 (594)
Q Consensus 89 t~GFRGEAL~sIa~vs-~l~i~s~~~~~~~~~~~~~~~g~~~~~~----~~~-~~~GT~V~V~~LF~N~PvRrkflks~~ 162 (594)
|-|--|--++..-+.| .+++.++..+ .-|...+..|...... .+. ...||+|+-. -=|.|- ....
T Consensus 108 sgG~nGvGakl~NalS~~f~v~v~~~~--~~~~q~f~~g~~~~~~~~i~~~~~~~~gT~ItF~----PD~~~F---~~~~ 178 (390)
T 1s16_A 108 SGGLHGVGISVVNALSKRVEVNVRRDG--QVYNIAFENGEKVQDLQVVGTCGKRNTGTSVHFW----PDETFF---DSPR 178 (390)
T ss_dssp CSCCSSCHHHHHHHTEEEEEEEEEETT--EEEEEEEETTEEEEEEEEEEECCTTCCEEEEEEE----ECGGGS---SCCS
T ss_pred ECCCCCCCEEEEEECCCEEEEEEEECC--EEEEEEECCCCCCCCCEEEECCCCCCCCEEEEEE----ECHHHH---CCCC
T ss_conf 067576245898962410799998646--7689996399745672176145778996899999----486870---4423
Q ss_pred HHHHHHHHHHHHHHHCCCCCEEEEEECCCCEEEEECCCCCHHHHHHHHHH
Q ss_conf 89999999999987318997499998798307997178810489999973
Q gi|254780399|r 163 VETNLITDVIRRMAIAYPKVSFTFSTIKSNRYKMNFQSTNGNFPERISQV 212 (594)
Q Consensus 163 ~e~~~I~~~v~~~aL~~P~V~f~l~~~~~~~~~l~~~~~~~~l~~ri~~i 212 (594)
.....+...+++.|..+|.+.+.+.............. +.+.+-+..+
T Consensus 179 ~~~~~i~~~~k~~a~l~~gl~i~~~~~~~~~~~~~~~~--~Gi~~y~~~~ 226 (390)
T 1s16_A 179 FSVSRLTHVLKAKAVLCPGVEITFKDEINNTEQRWCYQ--DGLNDYLAEA 226 (390)
T ss_dssp CCHHHHHHHHHHHHHHSTTCEEEEEETTTTEEEEECCS--SCHHHHHHHH
T ss_pred CCHHHHHHHHHHHEEECCCCEEEEEECCCCEEEEEEEC--CCHHHHHHHH
T ss_conf 26999999998752886895578875168706777604--8676778887
No 26
>2o1u_A Endoplasmin; GRP94, HSP82, HSP90, HTPG, chaperone, AMP-PNP, GP96; HET: ANP; 2.40A {Canis lupus familiaris} PDB: 2o1v_A* 2o1w_A 2o1t_A
Probab=98.77 E-value=7.4e-08 Score=74.56 Aligned_cols=272 Identities=19% Similarity=0.280 Sum_probs=137.7
Q ss_pred CCHHHHHHHHHHHHHHCC------------------CCEEEEEEECCCEEEEEEEECCCCCCHHHHHHHHCCCC---CC-
Q ss_conf 697899999998777269------------------96799999809843999998889988989998750246---65-
Q gi|254780399|r 21 ERPSIAIKELIENSLDAE------------------SSRVETVIAGGGKSFFQITDNGFGMTSEEIPMAVQRHC---TS- 78 (594)
Q Consensus 21 ~~~~svVkELveNSlDAg------------------At~I~v~i~~~g~~~i~V~DnG~Gi~~~dl~~~~~rh~---TS- 78 (594)
.+|---|||||.||.||= .-.|.|.++..+. .+.|+|||.||+++|+...+-.=| |.
T Consensus 44 S~~eVFlRELisNA~DAi~k~r~~~l~~~~~~~~~~~~~I~i~~d~~~~-tl~i~DnGIGMt~~El~~~LgtIa~Sgt~~ 122 (666)
T 2o1u_A 44 KNKEIFLRELISNASDALDKIRLISLTDENALAGNEELTVKIKCDKEKN-LLHVTDTGVGMTREELVKNLGTIAKSGTSE 122 (666)
T ss_dssp SSCTTHHHHHHHHHHHHHHHHHHHTTSCTTSSSSCCCCCEEEEEETTTT-EEEEEECSCCCCHHHHHHHTTC--------
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHCCCCHHCCCCCCCEEEEEECCCCC-EEEEEECCCCCCHHHHHHHHHHHHHHHHHH
T ss_conf 9832759989874999999999986358200278888469998659899-899995388889999998723230132899
Q ss_pred ---CCHH---H----HHHCCC--CCCCHHHHHHHHHHE-EEEEEEECCCCCCCEEEEECCCCCCCC---CCCCCCCCCEE
Q ss_conf ---6312---4----411214--884048999876202-489998048986301551101000002---11012567578
Q gi|254780399|r 79 ---KISD---D----FSNIHT--FGFRGEALPSIGAVS-HLTLMSRPPQNNTGAQIAISGEKISSV---RPVAMNPGTIV 142 (594)
Q Consensus 79 ---Ki~~---d----l~~i~t--~GFRGEAL~sIa~vs-~l~i~s~~~~~~~~~~~~~~~g~~~~~---~~~~~~~GT~V 142 (594)
|+.+ | -.-|.- .|| .|-=-|| +++|.||..+++ ++...-+|+..... .....+.||+|
T Consensus 123 fl~~~~~~~~~~~~~~~~IGqFGvGf-----yS~FmVad~V~V~trs~~~~-~~~W~s~g~~~~~~~~~~~~~~~~GT~I 196 (666)
T 2o1u_A 123 FLNKMTEAQEDGQSTSELIGQFGVGF-----YSAFLVADKVIVTSKHNNDT-QHIWESDSNEFSVIADPRGNTLGRGTTI 196 (666)
T ss_dssp -----------------------CTT-----GGGGGTEEEEEEEEECTTSC-CEEEEESSSCCEEEECTTCCSSSSEEEE
T ss_pred HHHHHHHHHHCCCCHHHHHCCCCCCC-----EEEEEEEEEEEEEEECCCCC-CCEEEECCCCCEEECCCCCCCCCCCEEE
T ss_conf 99998742101231033340577451-----13427867999998548877-5058935898357456655666897389
Q ss_pred EEEHHHHHHHHHHHCCCCHHHHH---HHHHHHHHHHHHCCCCCEEEEEECCCC--------EEEEE-----CC-CC----
Q ss_conf 85210121125431034536899---999999999873189974999987983--------07997-----17-88----
Q gi|254780399|r 143 EVRDLFFTIPARLNFLKSEQVET---NLITDVIRRMAIAYPKVSFTFSTIKSN--------RYKMN-----FQ-ST---- 201 (594)
Q Consensus 143 ~V~~LF~N~PvRrkflks~~~e~---~~I~~~v~~~aL~~P~V~f~l~~~~~~--------~~~l~-----~~-~~---- 201 (594)
+.. ||....|+ ..|.+++.+|+=.= .+-+.+...... ...+. +. +.
T Consensus 197 ~L~------------lk~~~~e~l~~~~i~~li~kYs~fi-~~PI~l~~~~~~~~~~~~~~~~~iN~~~~lW~r~~~~it 263 (666)
T 2o1u_A 197 TLV------------LKEEASDYLELDTIKNLVKKYSQFI-NFPIYVWSSKTGGGGKTVWDWELMNDIKPIWQRPSKEVE 263 (666)
T ss_dssp EEE------------ECTTTTTSSSTTHHHHHHHHHSTTC-CSCEEEEECC-------CCEEEECSCCSCTTTSCTTTCC
T ss_pred EEE------------ECCCHHHHCCHHHHHHHHHHHCCCC-CCCEEEECCCCCCCCCCCCHHHHHCCCCCCCCCCHHHCC
T ss_conf 997------------0550143411999999999741367-777698304444555455405550666644468812237
Q ss_pred CHHHHHHHHHHHHHHHHHHHHHCCCCC-EEEEEEEEECCCCC---------CCCCCHHHHHHHCCCHHHCHHHHHHHHHH
Q ss_conf 104899999732166654310022442-03656666216110---------33232066775152100075888999987
Q gi|254780399|r 202 NGNFPERISQVIGEDFINNAVELNEKS-NEITLQGYTGIPTF---------NRGNANQFYVFINGRTVQDKFILSTIRTA 271 (594)
Q Consensus 202 ~~~l~~ri~~i~G~~~~~~l~~i~~~~-~~~~i~G~is~P~~---------~r~~~~~q~ifVNgR~V~~~~l~~AI~~a 271 (594)
...+.+-...+++. ...-+..+.... +.+.+.|.+=.|.. ....+...-+|+|+=.|.+.
T Consensus 264 ~eey~~fy~~~~~~-~~~Pl~~ih~~~eg~~~~~~llyiP~~~p~~~~~~~~~~~~~~i~LY~krVfI~d~--------- 333 (666)
T 2o1u_A 264 DDEYKAFYKSFSKE-SDDPMAYIHFTAEGEVTFKSILFVPTSAPRGLFDEYGSKKSDYIKLYVRRVFITDD--------- 333 (666)
T ss_dssp HHHHHHHHHHTTCT-TSCCSEEEEEEECSSSCEEEEEEECSSCCC------------CEEEEETTEEEESC---------
T ss_pred HHHHHHHHHHHCCC-CCCCHHHEEECCCCCCEEEEEEEECCCCCHHHHHHHHHHHCCCEEEEEEEEEEECC---------
T ss_conf 88999898750123-35873441230367621578997114584444544324304764899730386054---------
Q ss_pred HHHHCCCCCCEEEEEEEEEEHHHHCCCCCCHHHHHHHCCH--HHHHHHHHHHHHHHHHH
Q ss_conf 5544279998079999996065712475711112553597--99999999978988753
Q gi|254780399|r 272 YAETIPLGRYPVVVLLLEIDPRQVDVNVHPAKSYIRFRNP--TIIRNFIIQSIQKAINK 328 (594)
Q Consensus 272 Y~~~l~~g~~P~~vL~i~i~p~~vDVNVHP~K~eVrf~de--~~i~~~i~~~i~~~L~~ 328 (594)
..++||. |- +|+.--+|...+-.||. +|.--.|. ..|...|...|.+.|..
T Consensus 334 ~~~LLP~--wl-~FvrGVVDS~DLpLNvS---RE~LQ~d~~l~kI~~~i~kkv~~~L~~ 386 (666)
T 2o1u_A 334 FHDMMPK--YL-NFVKGVVDSDDLPLNVS---RETLQQHKLLKVIRKKLVRKTLDMIKK 386 (666)
T ss_dssp CCTTSCG--GG-TTCEEEEEESSSCSSSC---HHHHHTCHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHCHH--HH-HHHCCEECCCCCCCCCH---HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 5443828--77-53211200112675410---555542399999999999999999987
No 27
>3g75_A DNA gyrase subunit B; antibiotic resistance, isomerase; HET: DNA B48; 2.30A {Staphylococcus aureus} PDB: 3g7b_A*
Probab=98.69 E-value=4e-07 Score=69.31 Aligned_cols=145 Identities=17% Similarity=0.236 Sum_probs=94.0
Q ss_pred CHHHHHHHHHHHHHHC----CCCEEEEEEECCCEEEEEEEECCCCCCHHHHHHHHCCCCCCCCHHHHHHCCCCCCCHHHH
Q ss_conf 9789999999877726----996799999809843999998889988989998750246656312441121488404899
Q gi|254780399|r 22 RPSIAIKELIENSLDA----ESSRVETVIAGGGKSFFQITDNGFGMTSEEIPMAVQRHCTSKISDDFSNIHTFGFRGEAL 97 (594)
Q Consensus 22 ~~~svVkELveNSlDA----gAt~I~v~i~~~g~~~i~V~DnG~Gi~~~dl~~~~~rh~TSKi~~dl~~i~t~GFRGEAL 97 (594)
.+...|.|+|.||+|= .|+.|.|.+..+| .|.|.|||.||+- ..|-..+.. .++-+ || .
T Consensus 20 Gl~~l~~EiidNsvDE~~~g~~~~I~v~~~~d~--si~V~D~GRGIPv-------d~h~~~~~~-~~e~i--~t-----~ 82 (184)
T 3g75_A 20 GLHHLVWEIVDNSIDEALAGYANQIEVVIEKDN--WIKVTDNGRGIPV-------DIQEKMGRP-AVEVI--LT-----S 82 (184)
T ss_dssp HHHHHHHHHHHHHHHHHHHTSCCEEEEEECGGG--CEEEEECSSCCCC-------CBCTTTSCB-HHHHH--HT-----T
T ss_pred CCEEEEEEEEEHHHHHHHCCCCCEEEEEECCCC--CEEEEEECCCCCC-------CCCCCCCCC-HHHEE--EE-----E
T ss_conf 222331011135665875597754599996899--6999993577511-------102457975-13188--76-----8
Q ss_pred HHHHHHE-EEEEEEECCCCCCCEEEEECCCCCCC-CCCC--CCCCCCEEEEEHHHHHHHHHHHCCCCHHHHHHHHHHHHH
Q ss_conf 9876202-48999804898630155110100000-2110--125675788521012112543103453689999999999
Q gi|254780399|r 98 PSIGAVS-HLTLMSRPPQNNTGAQIAISGEKISS-VRPV--AMNPGTIVEVRDLFFTIPARLNFLKSEQVETNLITDVIR 173 (594)
Q Consensus 98 ~sIa~vs-~l~i~s~~~~~~~~~~~~~~~g~~~~-~~~~--~~~~GT~V~V~~LF~N~PvRrkflks~~~e~~~I~~~v~ 173 (594)
+..-++| .+++.++..+. -|...++.|.... .+.+ ....||+|+-. |=..-|.....-....|.+.++
T Consensus 83 svvNALS~~l~v~v~rdgk--~~~q~f~~G~~~~~l~~~~~~~~~GT~I~F~------PD~~iF~~~~~~~~~~l~~rl~ 154 (184)
T 3g75_A 83 SVVNALSQDLEVYVHRNET--IYHQAYKKGVPQFDLKEVGTTDKTGTVIRFK------ADGEIFTETTVYNYETLQQRIR 154 (184)
T ss_dssp CHHHHTEEEEEEEEEETTE--EEEEEEETTEESSCCEEEEECSCCEEEEEEE------ECTTTSCSCCCCCHHHHHHHHH
T ss_pred EEEEECCCEEEEEEEECCE--EEEEEECCCEECCCCEECCCCCCCCCEEEEE------CCCCCCCCCCCCCHHHHHHHHH
T ss_conf 9947168849999998999--9999967987998733657767997599998------9903135665258999999999
Q ss_pred HHHHCCCCCEEEEEECCC
Q ss_conf 987318997499998798
Q gi|254780399|r 174 RMAIAYPKVSFTFSTIKS 191 (594)
Q Consensus 174 ~~aL~~P~V~f~l~~~~~ 191 (594)
++|..+|++.+.|+....
T Consensus 155 ~~A~Ln~Gl~i~l~d~r~ 172 (184)
T 3g75_A 155 ELAFLNKGIQITLRDERD 172 (184)
T ss_dssp HHHHHSTTCEEEEEECSS
T ss_pred HHCCCCCCCEEEEEEECC
T ss_conf 973168987999997268
No 28
>1uyl_A HSP 86, heat shock protein HSP 90-alpha; ATPase, chaperone, ATP-binding; 1.4A {Homo sapiens} SCOP: d.122.1.1 PDB: 1uy7_A* 1uy8_A* 1uy9_A* 1uyc_A* 1uyd_A* 1uye_A* 1uyf_A* 1uyg_A* 1uyh_A* 1uyk_A* 1uy6_A 2cdd_A* 2uwd_A* 2vci_A* 2vcj_A* 2wi1_A* 2wi2_A* 2wi3_A* 2wi4_A* 2wi5_A* ...
Probab=98.68 E-value=1.9e-07 Score=71.60 Aligned_cols=142 Identities=25% Similarity=0.330 Sum_probs=87.2
Q ss_pred CCCCHHHHHHHHHHHHHHCC------------------CCEEEEEEECCCEEEEEEEECCCCCCHHHHHHHHCCCC---C
Q ss_conf 22697899999998777269------------------96799999809843999998889988989998750246---6
Q gi|254780399|r 19 IIERPSIAIKELIENSLDAE------------------SSRVETVIAGGGKSFFQITDNGFGMTSEEIPMAVQRHC---T 77 (594)
Q Consensus 19 vi~~~~svVkELveNSlDAg------------------At~I~v~i~~~g~~~i~V~DnG~Gi~~~dl~~~~~rh~---T 77 (594)
.=.+|--.+||||.||.||- --.|.|.++..+. .+.|+|||.||+++|+..-+-.=| |
T Consensus 37 LYS~keiFLRELIsNAsDA~~k~r~~~l~~~~~~~~~~~~~I~i~~d~~~~-tl~I~DnGiGMt~~el~~~LgtIa~Sgt 115 (236)
T 1uyl_A 37 FYSNKEIFLRELISNSSDALDKIRYESLTDPSKLDSGKELHINLIPNKQDR-TLTIVDTGIGMTKADLINNLGTIAKSGT 115 (236)
T ss_dssp CCSCTTHHHHHHHHHHHHHHHHHHHHHHHCGGGGTTCCCCCEEEEEETTTT-EEEEEECSCCCCHHHHHTGGGSCHHHHH
T ss_pred CCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCEEEEEECCCCC-EEEEEECCCCCCHHHHHHHHHHHHHCCC
T ss_conf 689972119999867999999999997459400156777379999869887-8999968977578999987223430361
Q ss_pred CCC----H--HHHHHCCCCCCCHHHHHHHHHHE-EEEEEEECCCCCCCEEEEECCCCCCCCC---CCCCCCCCEEEEEHH
Q ss_conf 563----1--24411214884048999876202-4899980489863015511010000021---101256757885210
Q gi|254780399|r 78 SKI----S--DDFSNIHTFGFRGEALPSIGAVS-HLTLMSRPPQNNTGAQIAISGEKISSVR---PVAMNPGTIVEVRDL 147 (594)
Q Consensus 78 SKi----~--~dl~~i~t~GFRGEAL~sIa~vs-~l~i~s~~~~~~~~~~~~~~~g~~~~~~---~~~~~~GT~V~V~~L 147 (594)
.+. . .|-.-|.-||- -..|-=.|| ++++.||..++. ++.....|+..-... .-..+.||+|+..
T Consensus 116 ~~f~~~~~~~~d~~~IGqFGV---GFyS~FmVad~V~V~Tk~~~~~-~~~w~s~g~g~~~i~~~~~~~~~~GT~I~L~-- 189 (236)
T 1uyl_A 116 KAFMEALQAGADISMIGQFGV---GFYSAYLVAEKVTVITKHNDDE-QYAWESSAGGSFTVRTDTGEPMGRGTKVILH-- 189 (236)
T ss_dssp HHHHHHHHTTCCGGGGGGGTC---GGGGGGGTEEEEEEEEECTTSC-CEEEEECSTTEEEEEECCSSCCSSEEEEEEE--
T ss_pred HHHHHHHHHCCCCCHHHHCCC---CEEEECCCCCEEEEEECCCCCC-CCEEEECCCCCEEEEEECCCCCCCCCEEEEE--
T ss_conf 999987550156122211152---1354023467689997469876-4307813788737985045556766179998--
Q ss_pred HHHHHHHHHCCCCHHH---HHHHHHHHHHHHHH
Q ss_conf 1211254310345368---99999999999873
Q gi|254780399|r 148 FFTIPARLNFLKSEQV---ETNLITDVIRRMAI 177 (594)
Q Consensus 148 F~N~PvRrkflks~~~---e~~~I~~~v~~~aL 177 (594)
||.+.. +-..|.++|.+|+-
T Consensus 190 ----------lk~d~~efl~~~~i~~iikkys~ 212 (236)
T 1uyl_A 190 ----------LKEDQTEYLEERRIKEIVKKHSQ 212 (236)
T ss_dssp ----------ECGGGGGGGSHHHHHHHHHHHCT
T ss_pred ----------ECCCHHHHHCHHHHHHHHHHHHH
T ss_conf ----------47776887198999999999864
No 29
>3g7e_A DNA gyrase subunit B; isomerase; HET: DNA B46; 2.20A {Escherichia coli} PDB: 1kzn_A* 1aj6_A*
Probab=98.65 E-value=6.5e-07 Score=67.77 Aligned_cols=163 Identities=16% Similarity=0.255 Sum_probs=109.7
Q ss_pred CCCHHHHHHHHHHHHHHC----CCCEEEEEEECCCEEEEEEEECCCCCCHH--------HHHHHH-CCCCCCCCHHHHHH
Q ss_conf 269789999999877726----99679999980984399999888998898--------999875-02466563124411
Q gi|254780399|r 20 IERPSIAIKELIENSLDA----ESSRVETVIAGGGKSFFQITDNGFGMTSE--------EIPMAV-QRHCTSKISDDFSN 86 (594)
Q Consensus 20 i~~~~svVkELveNSlDA----gAt~I~v~i~~~g~~~i~V~DnG~Gi~~~--------dl~~~~-~rh~TSKi~~dl~~ 86 (594)
.+.+...+.|+|.||+|. .++.|.|.+...| .|.|.|||.||+-+ -.++++ .-|+-||..+|-++
T Consensus 19 ~~gl~~i~~Eil~NavDe~~~~~~~~i~v~i~~dg--~isV~ddG~GIPv~~h~~~~~~~~elif~~l~tg~nyd~~~~~ 96 (203)
T 3g7e_A 19 GTGLHHMVFEVVDNAIDEALAGHCKEIIVTIHADN--SVSVQDDGRGIPTGIHPEEGVSAAEVIMTVLHAGGKFDDNSYK 96 (203)
T ss_dssp SHHHHHHHHHHHHHHHHHHHTTCCCEEEEEECTTS--CEEEEECSSCCCCSCCTTTCCCHHHHHHHSTTCCSEECTTCCE
T ss_pred CCCCEEEEEEEEEEHHHHHCCCCCCEEEEEECCCC--EEEEEECCCCCCCCCCCCCCCCEEEEEEEEEEECCCCCCCCCE
T ss_conf 87274899988883445631599976899996799--7999989977456445766982206899898404778888613
Q ss_pred CCCCCCCHHHHHHHHHHEE-EEEEEECCCCCCCEEEEECCCCCCCCC---CCCCCCCCEEEEEHHHHHHHHHHHCCCCHH
Q ss_conf 2148840489998762024-899980489863015511010000021---101256757885210121125431034536
Q gi|254780399|r 87 IHTFGFRGEALPSIGAVSH-LTLMSRPPQNNTGAQIAISGEKISSVR---PVAMNPGTIVEVRDLFFTIPARLNFLKSEQ 162 (594)
Q Consensus 87 i~t~GFRGEAL~sIa~vs~-l~i~s~~~~~~~~~~~~~~~g~~~~~~---~~~~~~GT~V~V~~LF~N~PvRrkflks~~ 162 (594)
.|-|-.|--+...-+.|. +++.++..+ .-|...++.|...... ......||+|+ |. |=...|.....
T Consensus 97 -~~gG~nG~G~kl~N~~S~~f~v~~~~~g--k~~~q~f~~g~~~~~~~~~~~~~~~gT~V~----F~--PD~~~F~~~~~ 167 (203)
T 3g7e_A 97 -VSGGLHGVGVSVVNALSQKLELVIQREG--KIHRQIYEHGVPQAPLAVTGETEKTGTMVR----FW--PSLETFTNVTE 167 (203)
T ss_dssp -ESCCCCSSCHHHHHHTEEEEEEEEEETT--EEEEEEEETTEESSCCEEEEECSCCEEEEE----EE--ECTTTCCSCCS
T ss_pred -ECCCCCCCCCEEEEEEEEEEEEEEEECC--EEEEEEECCCEECCCCEECCCCCCCCEEEE----EE--ECCCCCCCCCC
T ss_conf -1167578672898986218999999899--999999849929888235257689988999----99--79310267541
Q ss_pred HHHHHHHHHHHHHHHCCCCCEEEEEECCCCE
Q ss_conf 8999999999998731899749999879830
Q gi|254780399|r 163 VETNLITDVIRRMAIAYPKVSFTFSTIKSNR 193 (594)
Q Consensus 163 ~e~~~I~~~v~~~aL~~P~V~f~l~~~~~~~ 193 (594)
-....+.+.++.+|..+|+|.+.|+......
T Consensus 168 ~~~~~l~~r~~~~A~l~~gl~v~~nder~~~ 198 (203)
T 3g7e_A 168 FEYEILAKRLRELSFLNSGVSIRLRDKRDGK 198 (203)
T ss_dssp CCHHHHHHHHHHHHHHSTTCEEEEEETTTCC
T ss_pred CCHHHHHHHHHHHHCCCCCCEEEEEECCCCC
T ss_conf 4799999999998135898589999647897
No 30
>1pvg_A DNA topoisomerase II; GHKL ATPase domain; HET: DNA ANP; 1.80A {Saccharomyces cerevisiae} SCOP: d.14.1.3 d.122.1.2 PDB: 1qzr_A*
Probab=98.60 E-value=2.2e-06 Score=63.98 Aligned_cols=128 Identities=16% Similarity=0.074 Sum_probs=86.2
Q ss_pred CCCHHHHHHHHHHHHHH---CC--CCEEEEEEE-CCCEEEEEEEECCCCCCHH--------HHHHH-HCCCCCCCCHHHH
Q ss_conf 26978999999987772---69--967999998-0984399999888998898--------99987-5024665631244
Q gi|254780399|r 20 IERPSIAIKELIENSLD---AE--SSRVETVIA-GGGKSFFQITDNGFGMTSE--------EIPMA-VQRHCTSKISDDF 84 (594)
Q Consensus 20 i~~~~svVkELveNSlD---Ag--At~I~v~i~-~~g~~~i~V~DnG~Gi~~~--------dl~~~-~~rh~TSKi~~dl 84 (594)
+.-+...+.|.|.||+| || +++|.|.|. ++| .|.|.|||.||+-+ -++++ +.-||-+|..++-
T Consensus 62 ~~Gl~~l~~EildNavDe~~~g~~~~~I~V~i~~~dg--sisV~DnGrGIPv~~h~~~~~~~~E~i~t~LhaGgkfd~~~ 139 (418)
T 1pvg_A 62 VPGLFKIFDEILVNAADNKVRDPSMKRIDVNIHAEEH--TIEVKNDGKGIPIEIHNKENIYIPEMIFGHLLTSSNYDDDE 139 (418)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHCTTCCEEEEEEETTTT--EEEEEEESSCCCCSBCTTTCSBHHHHHHHSSSEESCCCTTS
T ss_pred CCEEEEEEEEEEECHHHHHHCCCCCCEEEEEEECCCC--EEEEEECCCCCCCCCCCCCCCCCEEEEEEEECCCCCCCCCC
T ss_conf 6600246568999802476516888779999967998--89999699014610436678641157887740355445775
Q ss_pred HHCCCCCCCHHHHHHHHHHEE-EEEEEECCCCCCCEEEEECCCCCCCC----CCC-CCCCCCEEEEEHHHHHHHHH
Q ss_conf 112148840489998762024-89998048986301551101000002----110-12567578852101211254
Q gi|254780399|r 85 SNIHTFGFRGEALPSIGAVSH-LTLMSRPPQNNTGAQIAISGEKISSV----RPV-AMNPGTIVEVRDLFFTIPAR 154 (594)
Q Consensus 85 ~~i~t~GFRGEAL~sIa~vs~-l~i~s~~~~~~~~~~~~~~~g~~~~~----~~~-~~~~GT~V~V~~LF~N~PvR 154 (594)
+. .|=|--|--.+.--++|. +++.+....+..-|...++.|..... ... ....||+|+ |.-=|.|
T Consensus 140 yk-~SGGlhGvGasvvNalS~~f~vev~~~r~gk~y~q~f~~g~~~~~~~~i~~~~~~~~gT~I~----F~PD~~i 210 (418)
T 1pvg_A 140 KK-VTGGRNGYGAKLCNIFSTEFILETADLNVGQKYVQKWENNMSICHPPKITSYKKGPSYTKVT----FKPDLTR 210 (418)
T ss_dssp CC-CCSCCSSCHHHHHHHTEEEEEEEEEETTTTEEEEEEEETTTTEECCCEEEECCSSCCEEEEE----EEECGGG
T ss_pred CE-ECCCCCCCCHHHHHHHHHHHHHEEEECCCCEEEEEEEECCCCCCCCCEEECCCCCCCCEEEE----EEECHHH
T ss_conf 30-40787552640227663565317676149879999994684113442010135689953999----9838565
No 31
>2e0a_A Pyruvate dehydrogenase kinase isozyme 4; PDK4, ATP-binding, structural genomics, NPPSFA; HET: ANP; 1.86A {Homo sapiens} PDB: 2zdx_A* 2zdy_A* 2zkj_A* 3d2r_A*
Probab=98.30 E-value=9.6e-06 Score=59.37 Aligned_cols=25 Identities=16% Similarity=-0.052 Sum_probs=8.9
Q ss_pred HHHHCCCEEE---EECCCEEEEEECCCC
Q ss_conf 9986695999---607987999952611
Q gi|254780399|r 479 DLHRLGIKAE---RFGPNAIAIREIPAI 503 (594)
Q Consensus 479 ~l~~~Gf~~e---~~g~~~~~i~~iP~~ 503 (594)
..+.+|=+++ ..|.++-..-.+|.+
T Consensus 323 i~~~hgG~I~v~S~~G~GT~f~l~Lp~l 350 (394)
T 2e0a_A 323 YAKYFQGDLNLYSLSGYGTDAIIYLKAL 350 (394)
T ss_dssp HHHHTTCEEEEEEETTTEEEEEEEEESS
T ss_pred HHHHCCCEEEEEEECCCCEEEEEEEECC
T ss_conf 9998799799994279845999998488
No 32
>3d36_A Sporulation kinase B; GHKL ATPase, four helix bundle, class I two-component histidine kinase, phosphoprotein; HET: ADP; 2.03A {Geobacillus stearothermophilus}
Probab=98.23 E-value=4.5e-06 Score=61.74 Aligned_cols=58 Identities=21% Similarity=0.418 Sum_probs=47.5
Q ss_pred CHHHHHHHHHHHHHHCCCC--EEEEEEE-CCCEEEEEEEECCCCCCHHHHHHHHCCCCCCC
Q ss_conf 9789999999877726996--7999998-09843999998889988989998750246656
Q gi|254780399|r 22 RPSIAIKELIENSLDAESS--RVETVIA-GGGKSFFQITDNGFGMTSEEIPMAVQRHCTSK 79 (594)
Q Consensus 22 ~~~svVkELveNSlDAgAt--~I~v~i~-~~g~~~i~V~DnG~Gi~~~dl~~~~~rh~TSK 79 (594)
....|+--|+.||++|... .|.|.+. +++.-.|.|.|||+||++++++.+++|++|+|
T Consensus 123 ~l~qvl~NLl~NAik~~~~~~~i~i~~~~~~~~v~i~V~D~G~GI~~e~~~~iFepF~~tk 183 (244)
T 3d36_A 123 KFRQCLLNVMKNAIEAMPNGGTLQVYVSIDNGRVLIRIADTGVGMTKEQLERLGEPYFTTK 183 (244)
T ss_dssp HHHHHHHHHHHHHHHTCTTCEEEEEEEEEETTEEEEEEEECSSCCCHHHHHHTTSTTCCSS
T ss_pred HHHHHHHHHHHHHHHHCCCCCEEEEEEEEECCEEEEEEEECCCCCCHHHHHHHCCCCCCCC
T ss_conf 9999999999999986768976899999608889999998688989899998669986589
No 33
>2btz_A Pyruvate dehydrogenase kinase isoenzyme 2; GHKL motif regulation, transferase; 2.2A {Homo sapiens} PDB: 2bu2_A* 2bu5_A* 2bu6_A* 2bu7_A* 2bu8_A* 3crk_A* 1jm6_A* 3crl_A*
Probab=98.21 E-value=4.3e-06 Score=61.88 Aligned_cols=24 Identities=17% Similarity=0.272 Sum_probs=8.6
Q ss_pred EEEEECCCCCCHHHHHHHHCCCCC
Q ss_conf 999988899889899987502466
Q gi|254780399|r 54 FQITDNGFGMTSEEIPMAVQRHCT 77 (594)
Q Consensus 54 i~V~DnG~Gi~~~dl~~~~~rh~T 77 (594)
|.|+|||.||++++++.++++++|
T Consensus 273 I~V~D~G~GI~~e~l~~IF~~fyt 296 (394)
T 2btz_A 273 IKMSDRGGGVPLRKIERLFSYMYS 296 (394)
T ss_dssp EEEEECSCCCCHHHHHHHTCTTTT
T ss_pred EEEEECCCCCCHHHHHHHCCCCCC
T ss_conf 999889999898999987387621
No 34
>1gkz_A [3-methyl-2-oxobutanoate dehydrogenase [lipoamide]] kinase; transferase, mitochondrial protein kinase, potassium; HET: ADP; 2.2A {Rattus norvegicus} SCOP: a.29.5.1 d.122.1.4 PDB: 1gjv_A 1gkx_A*
Probab=98.19 E-value=1.1e-06 Score=66.03 Aligned_cols=16 Identities=6% Similarity=0.355 Sum_probs=9.1
Q ss_pred HHHHHHHHHHHHHHHH
Q ss_conf 9999999997898875
Q gi|254780399|r 312 TIIRNFIIQSIQKAIN 327 (594)
Q Consensus 312 ~~i~~~i~~~i~~~L~ 327 (594)
+.+.++|..|++-.-.
T Consensus 241 ~il~NLL~NAikat~e 256 (388)
T 1gkz_A 241 YILPELLKNAMRATME 256 (388)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHH
T ss_conf 9999999999999771
No 35
>2q8g_A [pyruvate dehydrogenase [lipoamide]] kinase isozyme 1; GHKL ATPase/kinase family, pyruvate dehydrogenase complex, mitochondrial kinase; HET: AZX; 1.90A {Homo sapiens} PDB: 2q8f_A* 2q8h_A
Probab=98.10 E-value=8.2e-06 Score=59.86 Aligned_cols=26 Identities=15% Similarity=-0.084 Sum_probs=10.1
Q ss_pred HHHHHCCCEEE---EECCCEEEEEECCCC
Q ss_conf 99986695999---607987999952611
Q gi|254780399|r 478 EDLHRLGIKAE---RFGPNAIAIREIPAI 503 (594)
Q Consensus 478 ~~l~~~Gf~~e---~~g~~~~~i~~iP~~ 503 (594)
..-+.||=+++ .-|.++-..-.+|.+
T Consensus 335 ~~ae~~gG~I~v~S~~G~GTd~~l~Lp~l 363 (407)
T 2q8g_A 335 LYAQYFQGDLKLYSLEGYGTDAVIYIKAL 363 (407)
T ss_dssp HHHHHTTCEEEEEEETTTEEEEEEEEESS
T ss_pred HHHHHCCCEEEEEEECCCCEEEEEEEECC
T ss_conf 99998799799996479625999997089
No 36
>3a0r_A Sensor protein; four helix bundle, PAS fold, kinase, phosphoprotein, transferase, two-component regulatory system; 3.80A {Thermotoga maritima}
Probab=98.10 E-value=3.1e-06 Score=62.87 Aligned_cols=57 Identities=19% Similarity=0.286 Sum_probs=23.7
Q ss_pred HHHCHHHHHHHHHHHHHHCCCCCCEEEEEEEEEEHHHHCCCCCCHHHHHHHCCHHHHHHHHHHHHHHHHH
Q ss_conf 0007588899998755442799980799999960657124757111125535979999999997898875
Q gi|254780399|r 258 TVQDKFILSTIRTAYAETIPLGRYPVVVLLLEIDPRQVDVNVHPAKSYIRFRNPTIIRNFIIQSIQKAIN 327 (594)
Q Consensus 258 ~V~~~~l~~AI~~aY~~~l~~g~~P~~vL~i~i~p~~vDVNVHP~K~eVrf~de~~i~~~i~~~i~~~L~ 327 (594)
++.-..+...+...++..+.... .-+.+++++....|...| ..+...+..-+.+|+.
T Consensus 202 ~~~l~~~i~~~~~~~~~~~~~~~---i~l~~~~~~~~~~v~~d~----------~~l~qvl~NLl~NAi~ 258 (349)
T 3a0r_A 202 EFNLNELIREVYVLFEEKIRKMN---IDFCFETDNEDLRVEADR----------TRIKQVLINLVQNAIE 258 (349)
T ss_dssp EEEHHHHHHHHHHHHHHHHTTTT---CCCEEEESCSCCEEEECH----------HHHHHHHHHHHTHHHH
T ss_pred CCCHHHHHHHHHHHHHHHHHHCC---CEEEEECCCCCEEEEECH----------HHHHHHHHHHHHHHHH
T ss_conf 65799999999999999998669---189997278870899857----------8999999999999999
No 37
>1ysr_A Sensor-type histidine kinase PRRB; ATP-binding domain, structural genomics, mycobacterium tuberculosis structural proteomics project; 1.78A {Mycobacterium tuberculosis} SCOP: d.122.1.3 PDB: 1ys3_A
Probab=97.99 E-value=2.1e-05 Score=56.95 Aligned_cols=58 Identities=19% Similarity=0.270 Sum_probs=47.6
Q ss_pred CHHHHHHHHHHHHHH-CCCCEEEEEEE-CCCEEEEEEEECCCCCCHHHHHHHHCCCCCCC
Q ss_conf 978999999987772-69967999998-09843999998889988989998750246656
Q gi|254780399|r 22 RPSIAIKELIENSLD-AESSRVETVIA-GGGKSFFQITDNGFGMTSEEIPMAVQRHCTSK 79 (594)
Q Consensus 22 ~~~svVkELveNSlD-AgAt~I~v~i~-~~g~~~i~V~DnG~Gi~~~dl~~~~~rh~TSK 79 (594)
....|+.-||.||+. ++++.|.|... ..+.-.|.|.|||.||+++++..+++|+.+++
T Consensus 46 ~l~~vl~NLl~NAiky~~~~~I~i~~~~~~~~v~i~V~D~G~GI~~~~~~~iF~~F~r~~ 105 (150)
T 1ysr_A 46 GLRLAVDNAIANAVKHGGATLVQLSAVSSRAGVEIAIDDNGSGVPEGERQVVFERFSRGS 105 (150)
T ss_dssp HHHHHHHHHHHHHHHTTCCSEEEEEEEEETTEEEEEEEESSSCCCGGGHHHHHTSCC---
T ss_pred HHHHHHHHHHHHHHHHCCCCEEEEEEEEECCEEEEEEEECCCCCCHHHHHHHCCCCCCCC
T ss_conf 999999999999997489978999999809999999998487979899998557634179
No 38
>3a0y_A Sensor protein; ATP-LID, kinase, phosphoprotein, transferase, two-component regulatory system; 1.57A {Thermotoga maritima} PDB: 3a0t_A* 3a0x_A 3a0w_A 3a0z_A
Probab=97.91 E-value=1.6e-05 Score=57.69 Aligned_cols=58 Identities=16% Similarity=0.184 Sum_probs=49.0
Q ss_pred CHHHHHHHHHHHHHHCCC--CEEEEEEEC-CCEEEEEEEECCCCCCHHHHHHHHCCCCCCC
Q ss_conf 978999999987772699--679999980-9843999998889988989998750246656
Q gi|254780399|r 22 RPSIAIKELIENSLDAES--SRVETVIAG-GGKSFFQITDNGFGMTSEEIPMAVQRHCTSK 79 (594)
Q Consensus 22 ~~~svVkELveNSlDAgA--t~I~v~i~~-~g~~~i~V~DnG~Gi~~~dl~~~~~rh~TSK 79 (594)
+...|+--|+.||++|.. .+|.|.+.. ++.-.|.|.|||+||++++++.+++|++|.|
T Consensus 47 ~l~qvl~NLi~NAi~~~~~~~~I~i~~~~~~~~v~i~V~D~G~Gi~~e~~~~iFe~F~t~k 107 (152)
T 3a0y_A 47 RIKQVLINLVQNAIEATGENGKIKITSEDMYTKVRVSVWNSGPPIPEELKEKIFSPFFTTK 107 (152)
T ss_dssp HHHHHHHHHHHHHHHHHCTTCEEEEEEEECSSEEEEEEEEESCCCCGGGTTGGGSTTCCCC
T ss_pred HHHHHHHHHHHHHHHHCCCCCEEEEEEEECCCEEEEEEECCCCCCCHHHHHHCCCCCEECC
T ss_conf 9999999999999998149977999999659889999970899989999987169951889
No 39
>1bxd_A ENVZ(290-450), protein (osmolarity sensor protein (ENVZ)); histidine kinase, osmosensor, His-Asp phosphorelay system, signal transduction; HET: ANP; NMR {Escherichia coli BL21} SCOP: d.122.1.3
Probab=97.86 E-value=1.5e-05 Score=57.97 Aligned_cols=58 Identities=16% Similarity=0.273 Sum_probs=50.0
Q ss_pred CHHHHHHHHHHHHHHCCCCEEEEEEE-CCCEEEEEEEECCCCCCHHHHHHHHCCCCCCC
Q ss_conf 97899999998777269967999998-09843999998889988989998750246656
Q gi|254780399|r 22 RPSIAIKELIENSLDAESSRVETVIA-GGGKSFFQITDNGFGMTSEEIPMAVQRHCTSK 79 (594)
Q Consensus 22 ~~~svVkELveNSlDAgAt~I~v~i~-~~g~~~i~V~DnG~Gi~~~dl~~~~~rh~TSK 79 (594)
....|+.-||.|||.++-..|.|.+. +++.-.|.|.|||.||++++++.+++|+.+.+
T Consensus 47 ~l~~vl~NLi~NAik~~~~~I~i~~~~~~~~~~i~V~D~G~GI~~e~~~~iF~~F~r~~ 105 (161)
T 1bxd_A 47 SIKRAVANMVVNAARYGNGWIKVSSGTEPNRAWFQVEDDGPGIAPEQRKHLFQPFVRGD 105 (161)
T ss_dssp HHHHHHHHHHHHHHTTCCSCEEEEEEEETTEEEEEEEEESSCSCTTGGGCSSCCCCCCS
T ss_pred HHHHHHHHHHHHHHHHCCCEEEEEEEEECCEEEEEEEECCCCCCHHHHHHHHCCCEECC
T ss_conf 99999999999999747985999999966989999998675559999988658835887
No 40
>1id0_A PHOQ histidine kinase; PHOQ/PHOP, signal transduction, transferase; HET: ANP; 1.60A {Escherichia coli} SCOP: d.122.1.3 PDB: 3cgz_A 3cgy_A
Probab=97.78 E-value=4e-05 Score=54.89 Aligned_cols=57 Identities=12% Similarity=0.123 Sum_probs=47.3
Q ss_pred CHHHHHHHHHHHHHHCCCCEEEEEEEC-CCEEEEEEEECCCCCCHHHHHHHHCCCCCC
Q ss_conf 978999999987772699679999980-984399999888998898999875024665
Q gi|254780399|r 22 RPSIAIKELIENSLDAESSRVETVIAG-GGKSFFQITDNGFGMTSEEIPMAVQRHCTS 78 (594)
Q Consensus 22 ~~~svVkELveNSlDAgAt~I~v~i~~-~g~~~i~V~DnG~Gi~~~dl~~~~~rh~TS 78 (594)
....|+--||+||+......|.|.+.. +..-.|.|.|||.||++++++.+++|+++.
T Consensus 44 ~l~~vl~NLl~NAiky~~~~i~I~~~~~~~~~~i~V~D~G~Gi~~~~~~~iF~~F~r~ 101 (152)
T 1id0_A 44 DFVEVMGNVLDNACKYCLEFVEISARQTDEHLYIVVEDDGPGIPLSKREVIFDRGQRV 101 (152)
T ss_dssp HHHHHHHHHHHHHHHHCSSEEEEEEEECSSCEEEEEEESSSCCCGGGTTGGGSCCCCT
T ss_pred HHHHHHHHHHHHHHHHCCCCEEEEEEEECCEEEEEEEECCCCCCHHHHHHHCCCCCCC
T ss_conf 9999999999999997799889999997999999999889998989999872897048
No 41
>1th8_A Anti-sigma F factor; SPOIIAB, SPOIIAA, anti-ANTI-sigma, sporulation, serine kinase, transcription; HET: ADP; 2.40A {Geobacillus stearothermophilus} SCOP: d.122.1.3 PDB: 1thn_A* 1til_A* 1l0o_A* 1tid_A*
Probab=97.66 E-value=0.00036 Score=48.07 Aligned_cols=91 Identities=18% Similarity=0.258 Sum_probs=56.3
Q ss_pred CCCHHHHHHHHHHHHHHCC-----CCEEEEEEE-CCCEEEEEEEECCCCCCHHHHHHHHCCCCCCCCHHHHHHCCCCCCC
Q ss_conf 2697899999998777269-----967999998-0984399999888998898999875024665631244112148840
Q gi|254780399|r 20 IERPSIAIKELIENSLDAE-----SSRVETVIA-GGGKSFFQITDNGFGMTSEEIPMAVQRHCTSKISDDFSNIHTFGFR 93 (594)
Q Consensus 20 i~~~~svVkELveNSlDAg-----At~I~v~i~-~~g~~~i~V~DnG~Gi~~~dl~~~~~rh~TSKi~~dl~~i~t~GFR 93 (594)
+...-.+|.|++.|+|..| ...|.|.+. +.+.-.|.|.|||.||++ +..+.++..|.+- ..+-.
T Consensus 37 i~di~lav~E~~~NaI~Ha~~~~~~~~I~i~~~~~~~~l~i~V~D~G~Gi~~--~~~~~~~~~~~~~--------~~~~~ 106 (145)
T 1th8_A 37 LTEIKTVVSEAVTNAIIHGYNNDPNGIVSISVIIEDGVVHLTVRDEGVGIPD--IEEARQPLFTTKP--------ELERS 106 (145)
T ss_dssp HHHHHHHHHHHHHHHHHTTSTTCTTSEEEEEEEEETTEEEEEEEECSSCCSC--HHHHTCCC---------------CCC
T ss_pred HHHHHHHHHHHHHHHHHHCCCCCCCEEEEEEEEEECCEEEEEEEECCCCCCC--HHHCCCCCCCCCC--------CCCCC
T ss_conf 9999999999999998843489999089999999378999999964789585--7753787754467--------99957
Q ss_pred HHHHHHHHHHE-EEEEEEECCCCCCCEEEEE
Q ss_conf 48999876202-4899980489863015511
Q gi|254780399|r 94 GEALPSIGAVS-HLTLMSRPPQNNTGAQIAI 123 (594)
Q Consensus 94 GEAL~sIa~vs-~l~i~s~~~~~~~~~~~~~ 123 (594)
|=.|+-|..+. +++|.|+. ..|+++++
T Consensus 107 GlGL~ii~~l~d~i~i~s~~---~~Gt~v~l 134 (145)
T 1th8_A 107 GMGFTIMENFMDEVIVESEV---NKGTTVYL 134 (145)
T ss_dssp SCHHHHHHHHSSEEEEEEET---TTEEEEEE
T ss_pred CHHHHHHHHHCCEEEEEECC---CCCEEEEE
T ss_conf 36899999969999999839---99699999
No 42
>2c2a_A Sensor histidine kinase; phosphotransfer, PHOQ, selenomethionyl MAD, two-component systems, transferase; HET: ADP; 1.9A {Thermotoga maritima} SCOP: a.30.2.1 d.122.1.3 PDB: 3dge_A*
Probab=97.61 E-value=0.00013 Score=51.19 Aligned_cols=58 Identities=16% Similarity=0.308 Sum_probs=46.2
Q ss_pred CHHHHHHHHHHHHHHCCC---C--EEEEEEE-CCCEEEEEEEECCCCCCHHHHHHHHCCCCCCC
Q ss_conf 978999999987772699---6--7999998-09843999998889988989998750246656
Q gi|254780399|r 22 RPSIAIKELIENSLDAES---S--RVETVIA-GGGKSFFQITDNGFGMTSEEIPMAVQRHCTSK 79 (594)
Q Consensus 22 ~~~svVkELveNSlDAgA---t--~I~v~i~-~~g~~~i~V~DnG~Gi~~~dl~~~~~rh~TSK 79 (594)
....|+.-|+.||+.+.. . .|.|.+. .++.-.|.|.|||.||++++++.+++++++..
T Consensus 138 ~l~qvl~NLl~NAik~t~~g~~~~~i~v~~~~~~~~~~i~V~D~G~GI~~e~~~~iF~~F~r~~ 201 (258)
T 2c2a_A 138 RIRQVLLNLLNNGVKYSKKDAPDKYVKVILDEKDGGVLIIVEDNGIGIPDHAKDRIFEQFYRVD 201 (258)
T ss_dssp HHHHHHHHHHHHHHHTCCTTCTTCEEEEEEEEETTEEEEEEEECSSCCCGGGTTGGGSTTCCCC
T ss_pred HHHHHHHHHHHHHHHHCCCCCCCEEEEEEEEECCCEEEEEEEECCCCCCHHHHHHHCCCCCCCC
T ss_conf 9999999999999985535898248999996059989999998289889899998745988288
No 43
>3jz3_A Sensor protein QSEC; helix-turn-helix, kinase domain, ATP-binding, cell inner MEM cell membrane, kinase, membrane, nucleotide-binding; 2.50A {Escherichia coli}
Probab=97.50 E-value=9.1e-05 Score=52.34 Aligned_cols=54 Identities=22% Similarity=0.402 Sum_probs=42.6
Q ss_pred HHHHHHHHHHHHHHCCCCE--EEEEEECCCEEEEEEEECCCCCCHHHHHHHHCCCCCCC
Q ss_conf 7899999998777269967--99999809843999998889988989998750246656
Q gi|254780399|r 23 PSIAIKELIENSLDAESSR--VETVIAGGGKSFFQITDNGFGMTSEEIPMAVQRHCTSK 79 (594)
Q Consensus 23 ~~svVkELveNSlDAgAt~--I~v~i~~~g~~~i~V~DnG~Gi~~~dl~~~~~rh~TSK 79 (594)
...|+.-||.||+...... |.|.+.. . .+.|.|||.||++++++.+++|+++++
T Consensus 118 l~~vl~NLl~NAikys~~~~~I~i~~~~--~-~~~v~D~G~GI~~e~~~~iFe~F~r~~ 173 (222)
T 3jz3_A 118 LSLLVRNLLDNAVRYSPQGSVVDVTLNA--D-NFIVRDNGPGVTPEALARIGERFYRPP 173 (222)
T ss_dssp HHHHHHHHHHHHHHTCCTTCEEEEEECS--S-EEEEECSCC------------------
T ss_pred HHHHHHHHHHHHHHHCCCCCEEEEEEEE--E-EEEECCCCCCCCHHHHHHHCCCCCCCC
T ss_conf 9999999999999868999679999974--2-499835899989999998617974189
No 44
>1r62_A Nitrogen regulation protein NR(II); PII, histidine kinase, two component system, transferase; 1.60A {Escherichia coli K12} SCOP: d.122.1.3
Probab=97.47 E-value=3.1e-05 Score=55.72 Aligned_cols=58 Identities=12% Similarity=0.142 Sum_probs=43.1
Q ss_pred CHHHHHHHHHHHHHHCCCCE--E---------EEEE---ECCCEEEEEEEECCCCCCHHHHHHHHCCCCCCC
Q ss_conf 97899999998777269967--9---------9999---809843999998889988989998750246656
Q gi|254780399|r 22 RPSIAIKELIENSLDAESSR--V---------ETVI---AGGGKSFFQITDNGFGMTSEEIPMAVQRHCTSK 79 (594)
Q Consensus 22 ~~~svVkELveNSlDAgAt~--I---------~v~i---~~~g~~~i~V~DnG~Gi~~~dl~~~~~rh~TSK 79 (594)
....|+--|+.||++|.... + .+.+ ..++.-.|.|.|||+||++++++.+++++.|.|
T Consensus 48 ~l~qvl~NLl~NAi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~i~V~D~G~GI~~~~~~~iF~pf~t~k 119 (160)
T 1r62_A 48 QIEQVLLNIVRNALQALGPEGGEIILRTRTAFQLTLHGERYRLAARIDVEDNGPGIPPHLQDTLFYPMVSGR 119 (160)
T ss_dssp HHHHHHHHHHHHHHHHHGGGCEEEEEEEEEEEEEEETTEEEEEEEEEEEEEECTTC----------------
T ss_pred HHHHHHHHHHHHHHHHCCCCCCEEEEEEEECCEEEEECCCCCCEEEEEECCCCCCCCHHHHHHHCCCCEECC
T ss_conf 999999999999998503689616886410230343023568468999787889779899997278722048
No 45
>1ixm_A SPO0B, protein (sporulation response regulatory protein); phosphotransferase, two component system; 2.60A {Bacillus subtilis} SCOP: d.123.1.1 PDB: 2ftk_A* 1f51_A
Probab=97.24 E-value=0.0001 Score=51.91 Aligned_cols=56 Identities=11% Similarity=0.033 Sum_probs=43.1
Q ss_pred CHHHHHHHHHHHHHHCCCC---EEEEEEE-CCCEEEEEEEECCCCCCHHHHHHHHCCCCC
Q ss_conf 9789999999877726996---7999998-098439999988899889899987502466
Q gi|254780399|r 22 RPSIAIKELIENSLDAESS---RVETVIA-GGGKSFFQITDNGFGMTSEEIPMAVQRHCT 77 (594)
Q Consensus 22 ~~~svVkELveNSlDAgAt---~I~v~i~-~~g~~~i~V~DnG~Gi~~~dl~~~~~rh~T 77 (594)
....++..|++||++|+.. .|.|.+. +++.-.|.|.|||.||+++++..++++.+.
T Consensus 112 ~l~~il~nli~NAi~~~~~~~~~I~i~~~~~~~~~~i~i~D~G~gi~~~~l~~i~~~~~~ 171 (192)
T 1ixm_A 112 KLMRKLFHLFDQAVSRESENHLTVSLQTDHPDRQLILYLDFHGAFADPSAFDDIRQNGYE 171 (192)
T ss_dssp HHHHHHHHHHHHHBCTTSCCEEEEEEECCCSSSSCEEEEEEESCBSCGGGCC--------
T ss_pred HHHHHHHHHHHHHHHHCCCCCCEEEEEEEECCCEEEEEEEECCCCCCHHHHHHHHHCCCC
T ss_conf 999999999999887427898669999996799999999976885688999998761137
No 46
>3ehg_A Sensor kinase (YOCF protein); GHL ATPase domain, transferase; HET: ATP; 1.74A {Bacillus subtilis}
Probab=97.21 E-value=0.00067 Score=46.09 Aligned_cols=44 Identities=18% Similarity=0.216 Sum_probs=35.4
Q ss_pred HHHHHHHHHHHHHH-CCCCEEEEEEE-CCCEEEEEEEECCCCCCHH
Q ss_conf 78999999987772-69967999998-0984399999888998898
Q gi|254780399|r 23 PSIAIKELIENSLD-AESSRVETVIA-GGGKSFFQITDNGFGMTSE 66 (594)
Q Consensus 23 ~~svVkELveNSlD-AgAt~I~v~i~-~~g~~~i~V~DnG~Gi~~~ 66 (594)
.+.+++|++.|++- |+|++|.|.+. .++.-.|+|.|||.|+..+
T Consensus 41 l~~ii~E~ltNa~kHa~a~~v~v~l~~~~~~~~l~V~DnG~g~~~~ 86 (128)
T 3ehg_A 41 LSMCLKEAVTNVVKHSQAKTCRVDIQQLWKEVVITVSDDGTFKGEE 86 (128)
T ss_dssp HHHHHHHHHHHHHHHTCCSEEEEEEEEETTEEEEEEEESSCCCSCS
T ss_pred HHHHHHHHHHHHHHHCCCCEEEEEEEEECCEEEEEEEECCCCCCCC
T ss_conf 9999999999999847996799999987999999999799454345
No 47
>3ehh_A Sensor kinase (YOCF protein); four-helix bundle, GHL ATPase domain, transferase; HET: MSE ADP; 2.10A {Bacillus subtilis} PDB: 3ehj_A* 3gie_A* 3gif_A* 3gig_A* 3ehf_A*
Probab=96.42 E-value=0.01 Score=37.66 Aligned_cols=45 Identities=18% Similarity=0.218 Sum_probs=34.8
Q ss_pred HHHHHHHHHHHHHH-CCCCEEEEEEE-CCCEEEEEEEECCCCCCHHH
Q ss_conf 78999999987772-69967999998-09843999998889988989
Q gi|254780399|r 23 PSIAIKELIENSLD-AESSRVETVIA-GGGKSFFQITDNGFGMTSEE 67 (594)
Q Consensus 23 ~~svVkELveNSlD-AgAt~I~v~i~-~~g~~~i~V~DnG~Gi~~~d 67 (594)
+..||.||+.|++. |++..|.|.+. .++.-.+.|.|||.|+++++
T Consensus 131 l~~il~ell~Na~kh~~~~~v~i~~~~~~~~~~i~v~Dng~g~~~~~ 177 (218)
T 3ehh_A 131 LSMCLKEAVTNVVKHSQAKTCRVDIQQLWKEVVITVSDDGTFKGEEN 177 (218)
T ss_dssp HHHHHHHHHHHHHHHTCCSEEEEEEEEETTEEEEEEEESSCCCC---
T ss_pred HHHHHHHHHHHHHHCCCCCEEEEEECCCCCEEEEECCCCCCCCCCCC
T ss_conf 99999999971121145505898741432034322147987667778
No 48
>3ke6_A Protein RV1364C/MT1410; anti-sigma factor, anti-sigma factor antagonist, phosphatase serine kinase, ATPase, unknown function; 2.60A {Mycobacterium tuberculosis}
Probab=95.62 E-value=0.028 Score=34.46 Aligned_cols=14 Identities=21% Similarity=0.496 Sum_probs=6.2
Q ss_pred EEEEEE-CCCCCCHH
Q ss_conf 999998-88998898
Q gi|254780399|r 53 FFQITD-NGFGMTSE 66 (594)
Q Consensus 53 ~i~V~D-nG~Gi~~~ 66 (594)
.+.|-| -|||++..
T Consensus 66 ~i~igDvsGHGv~AA 80 (399)
T 3ke6_A 66 VLVVGDVVGHGVEAA 80 (399)
T ss_dssp EEEEEECSSCSHHHH
T ss_pred EEEEEEECCCCHHHH
T ss_conf 999999558797899
No 49
>2x4h_A Hypothetical protein SSO2273; transcription; 2.30A {Sulfolobus solfataricus}
Probab=94.81 E-value=0.016 Score=36.19 Aligned_cols=96 Identities=16% Similarity=0.282 Sum_probs=52.4
Q ss_pred CCCCCCHHHHHHHHHHHHHHHHCCCEEEEECCCEEEEEECCCCCCCCCHHHHHH--HHHHHHHH-CCCCCCHHHHHHHHH
Q ss_conf 234678347777999899998669599960798799995261115567899999--99999985-788664689999999
Q gi|254780399|r 461 EIIDLLEGECALIMEHDEDLHRLGIKAERFGPNAIAIREIPAILSKKNIPQLLR--DIIDEIID-SSTTYTLQDRIENIL 537 (594)
Q Consensus 461 ~~i~Ls~~e~~~l~~~~~~l~~~Gf~~e~~g~~~~~i~~iP~~l~~~~~~~~l~--dll~~l~~-~~~~~~~~~~~~~~l 537 (594)
..+.+++. .+.+....|.+-|+.-.. ...+.++.- +...+..+++ .+++.+.. .+ ++
T Consensus 39 ~~L~vs~~---svt~~l~~L~~~Glv~~~--~~gi~LT~~----G~~~A~~i~rrHrl~e~fL~~lg----i~------- 98 (139)
T 2x4h_A 39 KDLKIAPS---SVFEEVSHLEEKGLVKKK--EDGVWITNN----GTRSINYLIKAHRVIEILLVNIG----ID------- 98 (139)
T ss_dssp HHHTCCHH---HHHHHHHHHHHTTSEEEE--TTEEEECHH----HHHHHHHHHHHHHHHHHHHHHHT----CC-------
T ss_pred HHHCCCCH---HHHHHHHHHHHCCCEEEE--CCCCEECHH----HHHHHHHHHHHHHHHHHHHHHCC----CC-------
T ss_conf 99688907---999999999988995450--477157888----99999999999999999999949----99-------
Q ss_pred HHHHHHHHHHCCCCCCHHHHHHHHHHHHHCCCCCCCCCCCEE
Q ss_conf 976348666458888989999999999818888788788727
Q gi|254780399|r 538 ATMACYGSIRSGRKMQSIEMNRLLREMEKNPNSSQCNHGRPT 579 (594)
Q Consensus 538 ~s~ACr~AIk~gd~L~~~e~~~Li~~L~~c~~P~~CpHGRPt 579 (594)
...||.-|-+.-+.++.+..++|.+-| .+|-.||||.|+
T Consensus 99 ~~~a~~~A~~iEH~ls~e~~~~L~~~L---g~p~~cPhG~pI 137 (139)
T 2x4h_A 99 KQTACEYSKQFDYLIPEEIIDKLYNYL---GKPSYCPHGLEI 137 (139)
T ss_dssp HHHHHHHHHHHGGGSCHHHHHHHHHHT---TCCSBCTTSCBC
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHC---CCCCCCCCCCCC
T ss_conf 899999998877528999999999981---898989696989
No 50
>1b3q_A Protein (chemotaxis protein CHEA); histine kinase, signal transduction, multi- domains protein, transferase; 2.60A {Thermotoga maritima} SCOP: a.30.2.1 b.40.7.1 d.122.1.3 PDB: 2ch4_A*
Probab=94.16 E-value=0.2 Score=28.36 Aligned_cols=54 Identities=17% Similarity=0.268 Sum_probs=35.7
Q ss_pred CHHHHHHHHHHHHHHCCCC--------------EEEEEEE-CCCEEEEEEEECCCCCCHHHHHHHHCCC
Q ss_conf 9789999999877726996--------------7999998-0984399999888998898999875024
Q gi|254780399|r 22 RPSIAIKELIENSLDAESS--------------RVETVIA-GGGKSFFQITDNGFGMTSEEIPMAVQRH 75 (594)
Q Consensus 22 ~~~svVkELveNSlDAgAt--------------~I~v~i~-~~g~~~i~V~DnG~Gi~~~dl~~~~~rh 75 (594)
+...++..|+.|++|.+.. .|.+... .++.-.+.+.|||.||.+........+.
T Consensus 106 ~l~~~l~~Ll~Na~~~~~e~~~~r~~~~~~~~~~i~~~~~~~~~~i~i~~~d~g~g~~~~~~~~~~~~~ 174 (379)
T 1b3q_A 106 EIGEPLLHLLRNAIDHGIEPKEERIAKGKPPIGTLILSARHEGNNVVIEVEDDGRGIDKEKIIRKAIEK 174 (379)
T ss_dssp HHHHHHHHHHHHHHHHTSCCHHHHHHTTCCSSEEEEEEEEEETTEEEEEEEECSCCCCHHHHHHHHHHS
T ss_pred HHHHHHHHHHHHHHHHCCCCCEEEEEEEECCCCCCEEEEEECCCEEEEEEEECCCCCCCCCCCEEEEEE
T ss_conf 999999999877776434786289886403555303799974987999994068776643441258984
No 51
>1fx7_A Iron-dependent repressor IDER; DTXR, iron-dependent regulator, signaling protein; 2.00A {Mycobacterium tuberculosis} SCOP: a.4.5.24 a.76.1.1 b.34.1.2 PDB: 1u8r_A
Probab=94.07 E-value=0.037 Score=33.55 Aligned_cols=37 Identities=19% Similarity=0.205 Sum_probs=27.0
Q ss_pred HHHHHHHHCCCCCCHHHHHHHHHHHHHCCCCCCCCCCCEE
Q ss_conf 6348666458888989999999999818888788788727
Q gi|254780399|r 540 MACYGSIRSGRKMQSIEMNRLLREMEKNPNSSQCNHGRPT 579 (594)
Q Consensus 540 ~ACr~AIk~gd~L~~~e~~~Li~~L~~c~~P~~CpHGRPt 579 (594)
.||.-|-+.-+.++.+..++|-.-| .+|-+||||+|+
T Consensus 96 ~a~~~A~~lEH~~s~~~~~~l~~~l---~~p~~~Phg~pI 132 (230)
T 1fx7_A 96 EVHAEACRWEHVMSEDVERRLVKVL---NNPTTSPFGNPI 132 (230)
T ss_dssp HHHHHHHHHTTTCCHHHHHHHHHHT---TSCCBCTTSCBC
T ss_pred HHHHHHHHHEECCCHHHHHHHHHHH---CCCCCCCCCCCC
T ss_conf 7788877011008999999999982---899979898967
No 52
>2qq9_A Diphtheria toxin repressor; regulator, DTXR, helix-turn-helix, metal ION, activation, DNA-binding, ferrous iron, cytoplasm; 1.71A {Corynebacterium diphtheriae} PDB: 2tdx_A 1ddn_A 1g3t_A 1g3s_A 1g3w_A 2qqa_A 2qqb_A 2dtr_A 1bi0_A 1bi2_A 1bi3_A 1dpr_A 1bi1_A 1fwz_A 1g3y_A 1c0w_A* 3glx_A 1p92_A 1xcv_A 1f5t_A ...
Probab=93.61 E-value=0.039 Score=33.44 Aligned_cols=97 Identities=12% Similarity=0.171 Sum_probs=48.0
Q ss_pred CCCCCHHHHHHHHHHHHHHHHCCCEEEEECCCEEEEEECCCCCCCCCHHHHHH--HHHHHHH-HCCCCCCHHHHHHHHHH
Q ss_conf 34678347777999899998669599960798799995261115567899999--9999998-57886646899999999
Q gi|254780399|r 462 IIDLLEGECALIMEHDEDLHRLGIKAERFGPNAIAIREIPAILSKKNIPQLLR--DIIDEII-DSSTTYTLQDRIENILA 538 (594)
Q Consensus 462 ~i~Ls~~e~~~l~~~~~~l~~~Gf~~e~~g~~~~~i~~iP~~l~~~~~~~~l~--dll~~l~-~~~~~~~~~~~~~~~l~ 538 (594)
.+.+++.- ..+....|.+-|+.-. ...+.+.++.- +...+..+++ .+++.+. +.-. .. ++-
T Consensus 33 ~L~vs~~s---vt~~l~~L~~~Gli~~-~~~~~v~LT~~----G~~~A~~i~rrHrl~E~fL~~~lg-~~-----~~~-- 96 (226)
T 2qq9_A 33 RLEQSGPT---VSQTVARMERDGLVVV-ASDRSLQMTPT----GRTLATAVMRKHRLAERLLTDIIG-LD-----INK-- 96 (226)
T ss_dssp HHTCCHHH---HHHHHHHHHHTTSEEE-CTTSBEEECHH----HHHHHHHHHHHHHHHHHHHHHTTC-CC-----HHH--
T ss_pred HHCCCHHH---HHHHHHHHHHCCCEEE-CCCCCEEECHH----HHHHHHHHHHHHHHHHHHHHHHHC-CC-----HHH--
T ss_conf 96899179---9999999998899897-28978798988----999999999999999999999709-99-----999--
Q ss_pred HHHHHHHHHCCCCCCHHHHHHHHHHHHHCCCCCCCCCCCEE
Q ss_conf 76348666458888989999999999818888788788727
Q gi|254780399|r 539 TMACYGSIRSGRKMQSIEMNRLLREMEKNPNSSQCNHGRPT 579 (594)
Q Consensus 539 s~ACr~AIk~gd~L~~~e~~~Li~~L~~c~~P~~CpHGRPt 579 (594)
|+.-|-+.-+.++.+...+|..-| .+|-+||||.|+
T Consensus 97 --~~~~A~~lEH~~s~~~~~~l~~~L---g~p~~~PhG~pI 132 (226)
T 2qq9_A 97 --VHDEADRWEHVMSDEVERRLVKVL---KDVSRSPFGNPI 132 (226)
T ss_dssp --HHHHHHHHTTTCCHHHHHHHHHHS---SCCSBCTTSCBC
T ss_pred --HHHHHHHHHHCCCHHHHHHHHHHH---CCCCCCCCCCCC
T ss_conf --999998887049999999999994---899979796967
No 53
>3hrs_A Metalloregulator SCAR; DTXR/MNTR family member, transcription; 2.70A {Streptococcus gordonii} PDB: 3hrt_A 3hru_A
Probab=91.83 E-value=0.085 Score=30.98 Aligned_cols=99 Identities=12% Similarity=0.137 Sum_probs=51.3
Q ss_pred CCCCCCHHHHHHHHHHHHHHHHCCCEEEEECCCEEEEEECCCCCCCCCHHHHHH--HHHHHHH-HCCCCCCHHHHHHHHH
Q ss_conf 234678347777999899998669599960798799995261115567899999--9999998-5788664689999999
Q gi|254780399|r 461 EIIDLLEGECALIMEHDEDLHRLGIKAERFGPNAIAIREIPAILSKKNIPQLLR--DIIDEII-DSSTTYTLQDRIENIL 537 (594)
Q Consensus 461 ~~i~Ls~~e~~~l~~~~~~l~~~Gf~~e~~g~~~~~i~~iP~~l~~~~~~~~l~--dll~~l~-~~~~~~~~~~~~~~~l 537 (594)
..+.+++.. +.+....|..-|+.... ....+.++.- +...+..+++ .+++.+. +.-.. . +
T Consensus 28 ~~l~vs~~s---v~~~l~rL~~~g~i~~~-~~~~i~LT~~----G~~~A~~i~r~hrl~e~fl~~~lg~-~-----~--- 90 (214)
T 3hrs_A 28 QLMQVSPPA---VTEMMKKLLAEELLIKD-KKAGYLLTDL----GLKLVSDLYRKHRLIEVFLVHHLGY-T-----T--- 90 (214)
T ss_dssp HHHTCCHHH---HHHHHHHHHHTTSEEEE-TTTEEEECHH----HHHHHHHHHHHHHHHHHHHHHTTCC-C-----H---
T ss_pred HHHCCCHHH---HHHHHHHHHHCCCEEEC-CCCCEEECHH----HHHHHHHHHHHHHHHHHHHHHHHCC-C-----H---
T ss_conf 986899579---99999999978998973-8977765787----9999999999999999999998499-9-----8---
Q ss_pred HHHHHHHHHHCCCCCCHHHHHHHHHHHHHCCCCCCCCCCCEEE
Q ss_conf 9763486664588889899999999998188887887887279
Q gi|254780399|r 538 ATMACYGSIRSGRKMQSIEMNRLLREMEKNPNSSQCNHGRPTF 580 (594)
Q Consensus 538 ~s~ACr~AIk~gd~L~~~e~~~Li~~L~~c~~P~~CpHGRPt~ 580 (594)
..||+.|-+.-+.++.+-..+|...| .+|-+||||+|+.
T Consensus 91 -~~~~~~A~~iEH~is~~~~~~l~~~l---~~p~~~P~g~~ip 129 (214)
T 3hrs_A 91 -EEIHEEAEVLEHTVSDHFVERLDQLL---DYPKACPHGGTIP 129 (214)
T ss_dssp -HHHHHHHHHHHTTSCHHHHHHHHHHT---TCCSBCTTSCBCC
T ss_pred -HHHHHHHHHHHHHCCHHHHHHHHHHH---CCCCCCCCCCCCC
T ss_conf -99999998886437999999999994---8998795989779
No 54
>1to6_A Glycerate kinase; glycerate metabolism, structural genomics T831, PSI, protein structure initiative; 2.50A {Neisseria meningitidis serogroup A} SCOP: c.141.1.1
Probab=56.76 E-value=3.4 Score=19.46 Aligned_cols=63 Identities=21% Similarity=0.300 Sum_probs=36.2
Q ss_pred HHHHHHHHHHHHCCCCEEEEEEECCCEEEEEEEECCCCCCHHHHHHHHCCCCCCCCHHHHHHCCCCCCCHHHHHHHHHH
Q ss_conf 9999999877726996799999809843999998889988989998750246656312441121488404899987620
Q gi|254780399|r 25 IAIKELIENSLDAESSRVETVIAGGGKSFFQITDNGFGMTSEEIPMAVQRHCTSKISDDFSNIHTFGFRGEALPSIGAV 103 (594)
Q Consensus 25 svVkELveNSlDAgAt~I~v~i~~~g~~~i~V~DnG~Gi~~~dl~~~~~rh~TSKi~~dl~~i~t~GFRGEAL~sIa~v 103 (594)
-=+-||+-.+||+||++|-|-+ ||.. ..|=|.|| |.-.+-++....= ..+..-|+.|..|+++
T Consensus 110 ~G~GelI~~Al~~G~~~Iiigl--GGSA---T~DgG~G~----L~ALG~~f~D~~g-------~~l~~~g~~L~~i~~i 172 (371)
T 1to6_A 110 RGIGELIRHLISQEIKEIYIGV--GGTA---SNDGGIGI----AAGLGYQFYDEDG-------NALPACGQSLLNLASV 172 (371)
T ss_dssp HHHHHHHHHHHHTTCCEEEEEE--CSBC---CCSTTHHH----HHTTTCEEECTTS-------CBCCSSGGGGGTCCEE
T ss_pred CCHHHHHHHHHHCCCCEEEEEC--CCCC---CCHHHHHH----HHHHCCCCCCCCC-------CCCCCCHHHHHHHHCC
T ss_conf 5189999999975998899806--8864---54277899----9970655417588-------9888851438874416
No 55
>1r5l_A Alpha-TTP, protein (alpha-tocopherol transfer protein); ataxia with vitamin E deficiency, transport protein; HET: MSE VIV; 1.50A {Homo sapiens} SCOP: a.5.3.1 c.13.1.1 PDB: 1oiz_A* 1oip_A*
Probab=54.15 E-value=9.1 Score=16.39 Aligned_cols=24 Identities=13% Similarity=0.279 Sum_probs=9.7
Q ss_pred HHHHHHHHHHHHCCC---CCCEEEEEE
Q ss_conf 889999875544279---998079999
Q gi|254780399|r 264 ILSTIRTAYAETIPL---GRYPVVVLL 287 (594)
Q Consensus 264 l~~AI~~aY~~~l~~---g~~P~~vL~ 287 (594)
+...+..+|...++. ...|++++.
T Consensus 76 ~~~~~~~~~~~~~~~~d~~grpv~~~~ 102 (262)
T 1r5l_A 76 IIGLLKAGYHGVLRSRDPTGSKVLIYR 102 (262)
T ss_dssp THHHHHTTCEEECSSCCTTCCEEEEEE
T ss_pred HHHHHHCCCEEECCCCCCCCCEEEEEE
T ss_conf 999997798776689899998589972
No 56
>3cwc_A Putative glycerate kinase 2; structural genomics, center for structural genomics of infectious diseases, csgid, IDP122, transferase; 2.23A {Salmonella typhimurium LT2}
Probab=53.51 E-value=3.2 Score=19.65 Aligned_cols=42 Identities=33% Similarity=0.438 Sum_probs=21.7
Q ss_pred HHHHHHHHHHHCCCCEEEEEEECCCEEEEEEEECCCCCCHHHHHHHHCCCC
Q ss_conf 999999877726996799999809843999998889988989998750246
Q gi|254780399|r 26 AIKELIENSLDAESSRVETVIAGGGKSFFQITDNGFGMTSEEIPMAVQRHC 76 (594)
Q Consensus 26 vVkELveNSlDAgAt~I~v~i~~~g~~~i~V~DnG~Gi~~~dl~~~~~rh~ 76 (594)
=+-||+-.+||+|+++|-|-+ ||. -..|=|.|| |.-.+-|+.
T Consensus 116 G~GelI~~Al~~G~~~iiigl--GGS---aT~DgG~G~----L~ALG~~f~ 157 (383)
T 3cwc_A 116 GTGELIRHALDAGVEHIIIGI--GGS---ATNDGGAGM----VQALGARLR 157 (383)
T ss_dssp HHHHHHHHHHHTTCSEEEEEC--CSB---CCCSTTHHH----HHHTTCEEE
T ss_pred CHHHHHHHHHHCCCCEEEEEC--CCC---CCCHHHHHH----HHHCCCCCC
T ss_conf 499999999976986799942--785---441477789----996596100
No 57
>3b7n_A Uncharacterized protein YKL091C; SEC14, golgi, phospholipid, phosphatidylinositol, signaling protein; HET: B7N; 1.86A {Saccharomyces cerevisiae} PDB: 3b74_A* 3b7q_A* 3b7z_A*
Probab=52.15 E-value=9.8 Score=16.17 Aligned_cols=19 Identities=11% Similarity=-0.099 Sum_probs=8.9
Q ss_pred EEEEEECCCCEEEEECCCC
Q ss_conf 4999987983079971788
Q gi|254780399|r 183 SFTFSTIKSNRYKMNFQST 201 (594)
Q Consensus 183 ~f~l~~~~~~~~~l~~~~~ 201 (594)
.+..-.+..++..+....+
T Consensus 121 ~~~~g~Dk~GrpV~i~r~g 139 (320)
T 3b7n_A 121 QYYHHVDKDGRPLYFEELG 139 (320)
T ss_dssp EEEEEECTTSCEEEEEECT
T ss_pred EEECCCCCCCCEEEEEEEC
T ss_conf 3307808999946888644
No 58
>2h09_A Transcriptional regulator MNTR; transcription regulator, diphtheria toxin, manganese transport, structural genomics, NPPSFA; 2.10A {Escherichia coli}
Probab=50.15 E-value=8.4 Score=16.63 Aligned_cols=118 Identities=9% Similarity=0.077 Sum_probs=57.4
Q ss_pred HHHHHHHHHHHHHHHHCC-----CCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEECCCEEEEEECCCCCCC
Q ss_conf 899899999998522103-----884211112222346783477779998999986695999607987999952611155
Q gi|254780399|r 432 HAAHERLIFEKMRQDFNS-----TKITSQTLLTPEIIDLLEGECALIMEHDEDLHRLGIKAERFGPNAIAIREIPAILSK 506 (594)
Q Consensus 432 HAAhERI~yE~l~~~~~~-----~~~~~Q~Ll~P~~i~Ls~~e~~~l~~~~~~l~~~Gf~~e~~g~~~~~i~~iP~~l~~ 506 (594)
..||.+-..|.|++.+.. .......+ --.+.+++.-. .+....|.+-|+.... ..+.+.++.- . .
T Consensus 30 r~~~~~e~~EdYLe~Iy~L~~~~~~vr~~dI--A~~L~vs~~sV---s~~l~~L~~~GlI~~~-~~~~i~LT~~--G--~ 99 (155)
T 2h09_A 30 REAHRRELIDDYVELISDLIREVGEARQVDM--AARLGVSQPTV---AKMLKRLATMGLIEMI-PWRGVFLTAE--G--E 99 (155)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHSCCCHHHH--HHHHTSCHHHH---HHHHHHHHHTTCEEEE-TTTEEEECHH--H--H
T ss_pred HHHHCCHHHHHHHHHHHHHHHCCCCCCHHHH--HHHHCCCHHHH---HHHHHHHHHCCCEEEC-CCCCEEECHH--H--H
T ss_conf 8700546799999999999853897709999--99969897899---9999999778898754-9987558985--9--9
Q ss_pred CCHHHHH--HHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHCCCCCCCCCCC
Q ss_conf 6789999--9999999857886646899999999763486664588889899999999998188887887887
Q gi|254780399|r 507 KNIPQLL--RDIIDEIIDSSTTYTLQDRIENILATMACYGSIRSGRKMQSIEMNRLLREMEKNPNSSQCNHGR 577 (594)
Q Consensus 507 ~~~~~~l--~dll~~l~~~~~~~~~~~~~~~~l~s~ACr~AIk~gd~L~~~e~~~Li~~L~~c~~P~~CpHGR 577 (594)
.-+..++ +.++..+... . .++ ++.+...|| +.-+.++.+..+.|.. |.||||=
T Consensus 100 ~~A~~i~rrHrlle~fL~~--l-gv~---~~~a~~~A~----~iEH~ls~et~~~l~~--------fl~pHG~ 154 (155)
T 2h09_A 100 KLAQESRERHQIVENFLLV--L-GVS---PEIARRDAE----GMEHHVSEETLDAFRL--------FTQKHGA 154 (155)
T ss_dssp HHHHHHHHHHHHHHHHHHH--H-TCC---HHHHHHHHH----HHGGGCCHHHHHHHHH--------CCC----
T ss_pred HHHHHHHHHHHHHHHHHHH--C-CCC---HHHHHHHHH----HHHHCCCHHHHHHHHH--------HHCCCCC
T ss_conf 9999999999999999999--2-998---889999999----9871299999999999--------7563689
No 59
>2j9w_A VPS28, VPS28-PROV protein; MVB, CHMP, ESCRT, NZF finger, HIV budding, protein transport; 1.30A {Xenopus laevis}
Probab=49.76 E-value=11 Score=15.92 Aligned_cols=57 Identities=14% Similarity=0.343 Sum_probs=37.4
Q ss_pred CCHHHHHHHHHHHHHHCCCC-CCH--HHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHH
Q ss_conf 67899999999999857886-646--8999999997634866645888898999999999981
Q gi|254780399|r 507 KNIPQLLRDIIDEIIDSSTT-YTL--QDRIENILATMACYGSIRSGRKMQSIEMNRLLREMEK 566 (594)
Q Consensus 507 ~~~~~~l~dll~~l~~~~~~-~~~--~~~~~~~l~s~ACr~AIk~gd~L~~~e~~~Li~~L~~ 566 (594)
.+...++.|++..+...+.. ..+ ..++.+++.. =..-++.|.|+.+|+++++-+|..
T Consensus 32 DqLhPlL~dL~~slnrl~~lp~dFegk~kv~~Wl~k---Ln~M~AsdeL~e~q~RqllfDle~ 91 (102)
T 2j9w_A 32 DEIQPDLRELMETMNRMSHLPPDFEGREKVSQWLQK---LSSMSASDELDDSQVRQMLFDLES 91 (102)
T ss_dssp HHHHHHHHHHHHHHHHCTTSCTTCHHHHHHHHHHHH---HHTSCTTCBCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHH---HHCCCCHHCCCHHHHHHHHHHHHH
T ss_conf 988477999999998616899773238899999999---967860200599999999999999
No 60
>1djx_A PLC-D1, phosphoinositide-specific phospholipase C, isozyme delta1; phosphoric diester hydrolase, hydrolase, lipid degradation, transducer; HET: I3P; 2.30A {Rattus norvegicus} SCOP: a.39.1.7 b.7.1.1 c.1.18.1 PDB: 1djg_A 1dji_A 1djh_A* 1djw_A* 1djy_A* 1djz_A* 2isd_A 1qas_A 1qat_A
Probab=42.36 E-value=14 Score=15.14 Aligned_cols=19 Identities=16% Similarity=0.102 Sum_probs=10.4
Q ss_pred EEECCCC-CCHHHHHHHHCC
Q ss_conf 9988899-889899987502
Q gi|254780399|r 56 ITDNGFG-MTSEEIPMAVQR 74 (594)
Q Consensus 56 V~DnG~G-i~~~dl~~~~~r 74 (594)
.-.||.| |+.+|+..++.+
T Consensus 20 ~D~d~dg~Ls~~El~~ll~~ 39 (624)
T 1djx_A 20 ADKNKDNKMNFKELKDFLKE 39 (624)
T ss_dssp --------------------
T ss_pred HCCCCCCCCCHHHHHHHHHH
T ss_conf 66799996879999999997
No 61
>2zkm_X 1-phosphatidylinositol-4,5-bisphosphate phosphodiesterase beta-2; phospholipase C, phosphoinositide phospholipase, PLC-beta-2, calcium, coiled coil; 1.62A {Homo sapiens} SCOP: a.39.1.7 b.7.1.1 b.55.1.1 c.1.18.1 PDB: 2fju_B
Probab=32.93 E-value=15 Score=14.89 Aligned_cols=12 Identities=33% Similarity=0.681 Sum_probs=6.7
Q ss_pred CCCCEEEEEEEEE
Q ss_conf 9998079999996
Q gi|254780399|r 278 LGRYPVVVLLLEI 290 (594)
Q Consensus 278 ~g~~P~~vL~i~i 290 (594)
...||+ +|.|++
T Consensus 398 tS~yPv-IlslE~ 409 (799)
T 2zkm_X 398 TSPYPI-ILSFEN 409 (799)
T ss_dssp SCCSCE-EEEEEE
T ss_pred CCCCCE-EEEEEC
T ss_conf 699987-999851
No 62
>3mud_A DNA repair protein XRCC4, tropomyosin alpha-1 CHA; tropomysoin, overlap complex, coiled-coils, contractIle PROT; HET: DNA; 2.20A {Homo sapiens}
Probab=31.71 E-value=20 Score=13.99 Aligned_cols=35 Identities=20% Similarity=0.326 Sum_probs=15.8
Q ss_pred CCHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHH
Q ss_conf 6789999999999985788664689999999976348
Q gi|254780399|r 507 KNIPQLLRDIIDEIIDSSTTYTLQDRIENILATMACY 543 (594)
Q Consensus 507 ~~~~~~l~dll~~l~~~~~~~~~~~~~~~~l~s~ACr 543 (594)
.+..+.+++++....+. .......++++=...+|+
T Consensus 120 ~~P~e~i~eli~~~l~t--Ia~l~~~ie~LqerLs~~ 154 (175)
T 3mud_A 120 ENPAEVIRELICYCLDT--TAKNEKSIDDLEEKVAHA 154 (175)
T ss_dssp SCHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHH
T ss_conf 98499999999999999--998887789999999999
No 63
>2bp3_A Filamin A; structural protein, cytoskeleton/complex, actin binding protein, cytoskeleton, complex; 2.32A {Homo sapiens} SCOP: b.1.18.10 PDB: 2aav_A
Probab=31.33 E-value=20 Score=13.95 Aligned_cols=28 Identities=32% Similarity=0.318 Sum_probs=14.6
Q ss_pred HHCCCCEEEEEEECCCEEEEEEEECCCC
Q ss_conf 7269967999998098439999988899
Q gi|254780399|r 35 LDAESSRVETVIAGGGKSFFQITDNGFG 62 (594)
Q Consensus 35 lDAgAt~I~v~i~~~g~~~i~V~DnG~G 62 (594)
-|||.-.+.|.|...+..-+.|.||+.|
T Consensus 32 ~~aG~g~l~v~v~~p~~~~~~v~~~~dG 59 (97)
T 2bp3_A 32 KDAGEGGLSLAIEGPSKAEISCTDNQDG 59 (97)
T ss_dssp TTCCSEEEEEEEEESSCCEEEEEECSSS
T ss_pred CCCCCCCEEEEEECCCCCEEEEEECCCC
T ss_conf 8888995699998899985579989999
No 64
>1vpb_A Putative modulator of DNA gyrase; BT3649, structural genomics, JCSG, joint center for structural genomics, PSI; 1.75A {Bacteroides thetaiotaomicron vpi-5482} SCOP: d.283.1.1
Probab=28.18 E-value=22 Score=13.58 Aligned_cols=36 Identities=8% Similarity=0.183 Sum_probs=26.2
Q ss_pred HHHHHHHHHHHHHHCCCCEEEEEEECCCEEEEEEEE
Q ss_conf 789999999877726996799999809843999998
Q gi|254780399|r 23 PSIAIKELIENSLDAESSRVETVIAGGGKSFFQITD 58 (594)
Q Consensus 23 ~~svVkELveNSlDAgAt~I~v~i~~~g~~~i~V~D 58 (594)
....+..+|+.|+++||+..+|.+..+--..|.+.|
T Consensus 18 ~~~~a~~~l~~a~k~Ga~~aev~~~~~~s~si~~~~ 53 (451)
T 1vpb_A 18 NKKLAQWAMDYALKNGCQAAKVLLYSSSNTSFELRD 53 (451)
T ss_dssp HHHHHHHHHHHHHHTTCSEEEEEEEEEEEEEEEEEC
T ss_pred HHHHHHHHHHHHHHCCCCEEEEEEEECCEEEEEEEC
T ss_conf 999999999999987997899999956238999999
No 65
>2itb_A TRNA-(MS(2)IO(6)A)-hydroxylase, putative; putative ATTH, structural genomics, joint center for structu genomics, JCSG; 2.05A {Pseudomonas putida KT2440} SCOP: a.25.1.7
Probab=23.41 E-value=27 Score=12.98 Aligned_cols=83 Identities=13% Similarity=0.123 Sum_probs=48.6
Q ss_pred CEEECCHHHHHHHHHHHH---HHHHHCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEECCCEEEEEECC
Q ss_conf 635400589989999999---85221038842111122223467834777799989999866959996079879999526
Q gi|254780399|r 425 GLVIVDQHAAHERLIFEK---MRQDFNSTKITSQTLLTPEIIDLLEGECALIMEHDEDLHRLGIKAERFGPNAIAIREIP 501 (594)
Q Consensus 425 gL~iIDQHAAhERI~yE~---l~~~~~~~~~~~Q~Ll~P~~i~Ls~~e~~~l~~~~~~l~~~Gf~~e~~g~~~~~i~~iP 501 (594)
..+++| ||.=||----. |+..|. . .+=|+.....|...|...|++-.+.+.+-|+.+.....+.+ +.++=
T Consensus 29 ~~~L~D-HA~cEkKAA~tA~sli~rYp----~-~~~Lv~~m~~LarEEL~HF~qV~~im~~Rgi~l~~~~~~~Y-a~~L~ 101 (206)
T 2itb_A 29 ETLLID-HKNCEFKAASTALSLIAKYN----T-HLDLINMMSRLAREELVHHEQVLRLMKRRGVPLRPVSAGRY-ASGLR 101 (206)
T ss_dssp HHHHHH-HHHHHHHHHHHHHHHHHHTT----T-CHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCCCCCCCCSH-HHHHH
T ss_pred HHHHHH-HHHHHHHHHHHHHHHHHHCC----C-CHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHH-HHHHH
T ss_conf 999999-99999999999999999889----9-18999999999999999999999999985996888898889-99999
Q ss_pred CCCCCCCHHHHHH
Q ss_conf 1115567899999
Q gi|254780399|r 502 AILSKKNIPQLLR 514 (594)
Q Consensus 502 ~~l~~~~~~~~l~ 514 (594)
..+.......++.
T Consensus 102 ~~~r~~~~~~llD 114 (206)
T 2itb_A 102 RLVRAHEPVKLVD 114 (206)
T ss_dssp TTSCSSTTHHHHH
T ss_pred HHCCCCCHHHHHH
T ss_conf 8704788189999
No 66
>2j3s_A Filamin-A; acetylation, polymorphism, cytoskeleton, disease mutation, actin-binding, phosphorylation, immunoglobulin like, structural protein; 2.5A {Homo sapiens} SCOP: b.1.18.10 b.1.18.10 PDB: 2e9i_A
Probab=22.40 E-value=28 Score=12.85 Aligned_cols=29 Identities=24% Similarity=0.138 Sum_probs=19.0
Q ss_pred HHCCCCEEEEEEECCCEEEEEEEECCCCC
Q ss_conf 72699679999980984399999888998
Q gi|254780399|r 35 LDAESSRVETVIAGGGKSFFQITDNGFGM 63 (594)
Q Consensus 35 lDAgAt~I~v~i~~~g~~~i~V~DnG~Gi 63 (594)
-|||-..++|.+.+...--+.|.|||.|-
T Consensus 32 ~~ag~~~l~v~v~~p~~v~~~v~d~~dGt 60 (288)
T 2j3s_A 32 RDAGYGGLSLSIEGPSKVDINTEDLEDGT 60 (288)
T ss_dssp TTSBSCCEEEEEESSSCCEEEEEECTTSE
T ss_pred CCCCCCCEEEEEECCCCCEEEEEECCCCE
T ss_conf 88888963999978988706999899998
No 67
>1u84_A Hypothetical protein; structural genomics, protein structure initiative, MCSG, PSI midwest center for structural genomics; 1.60A {Geobacillus stearothermophilus} SCOP: a.230.1.1
Probab=22.21 E-value=29 Score=12.82 Aligned_cols=59 Identities=14% Similarity=0.207 Sum_probs=43.5
Q ss_pred HHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHCCCCCCCC
Q ss_conf 899999999999857886646899999999763486664588889899999999998188887887
Q gi|254780399|r 509 IPQLLRDIIDEIIDSSTTYTLQDRIENILATMACYGSIRSGRKMQSIEMNRLLREMEKNPNSSQCN 574 (594)
Q Consensus 509 ~~~~l~dll~~l~~~~~~~~~~~~~~~~l~s~ACr~AIk~gd~L~~~e~~~Li~~L~~c~~P~~Cp 574 (594)
-+.-..|+++.+........+.+.+.++.-. -|+..+-.++|+.+-++|...++--.|.
T Consensus 30 YetE~~dvv~av~~~dd~~~LA~~IQ~Iye~-------SFee~~P~e~C~k~A~~LL~ik~~~sC~ 88 (90)
T 1u84_A 30 YDVEAASVLQAVYETEDARTLAARIQSIYEF-------AFDEPIPFPHCLKLARRLLELKQAASCP 88 (90)
T ss_dssp GHHHHHHHHHHHTTCSCHHHHHHHHHHHHHH-------HHSSCCCHHHHHHHHHHHHHHHHHHC--
T ss_pred CCHHHHHHHHHHHHCCCHHHHHHHHHHHHHH-------HHCCCCCHHHHHHHHHHHHHHHCCCCCC
T ss_conf 5437999999999418889999999999998-------7413476899999999998774167789
No 68
>2w0p_A Filamin-A; alternative splicing, cytoskeleton/complex, phosphoprotein, disease mutation, immunoglobulin like, zinc, complex; 1.90A {Homo sapiens} SCOP: b.1.18.10 PDB: 2brq_A* 2jf1_A 3isw_A
Probab=21.28 E-value=30 Score=12.69 Aligned_cols=26 Identities=15% Similarity=0.213 Sum_probs=8.5
Q ss_pred HCCCCEEEEEEECCCEEEEEEEECCC
Q ss_conf 26996799999809843999998889
Q gi|254780399|r 36 DAESSRVETVIAGGGKSFFQITDNGF 61 (594)
Q Consensus 36 DAgAt~I~v~i~~~g~~~i~V~DnG~ 61 (594)
|||...+.|.+......-+.|.||+.
T Consensus 30 ~ag~g~l~v~v~~p~~~~~~v~~~~d 55 (94)
T 2w0p_A 30 EAGAGGLAIAVEGPSKAEISFEDRKD 55 (94)
T ss_dssp GGCSCCEEEEEEESSCCEEEEEECTT
T ss_pred CCCCCCEEEEEECCCCCEEEEEECCC
T ss_conf 88899279999989998047898999
No 69
>2j9u_A VPS28, vacuolar protein sorting-associated protein 28; MVB, zinc, CHMP, ESCRT, membrane, transport, NZF finger, HIV budding, zinc-finger; 2.00A {Saccharomyces cerevisiae} SCOP: a.24.28.1 PDB: 2j9v_A 2g3k_A
Probab=20.69 E-value=31 Score=12.61 Aligned_cols=56 Identities=13% Similarity=0.308 Sum_probs=35.5
Q ss_pred CHHHHHHHHHHHHHHCCCC-CCHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHH
Q ss_conf 7899999999999857886-6468999999997634866645888898999999999981
Q gi|254780399|r 508 NIPQLLRDIIDEIIDSSTT-YTLQDRIENILATMACYGSIRSGRKMQSIEMNRLLREMEK 566 (594)
Q Consensus 508 ~~~~~l~dll~~l~~~~~~-~~~~~~~~~~l~s~ACr~AIk~gd~L~~~e~~~Li~~L~~ 566 (594)
+...++.|++..+...+.. ..-..++.+++.. =..-++.|.|+.+|+++++-+|..
T Consensus 30 qLhPlL~dL~~sln~l~~~dfegk~kv~~Wl~~---Ln~M~AsdeL~e~q~RqllfDle~ 86 (96)
T 2j9u_A 30 QLHPLLAELLISINRVTRDDFENRSKLIDWIVR---INKLSIGDTLTETQIRELLFDLEL 86 (96)
T ss_dssp HHHHHHHHHHHHHHHHCCCCCTTHHHHHHHHHH---HHTSCTTCBCCHHHHHHHHHHHHH
T ss_pred HHCHHHHHHHHHHHCCCCCCCCHHHHHHHHHHH---HHCCCCCCCCCHHHHHHHHHHHHH
T ss_conf 655469999999975797453548889999999---957861201699999999999999
Done!