RPSBLAST alignment for GI: 254780399 and conserved domain: cd03485

>gnl|CDD|48473 cd03485, MutL_Trans_hPMS_1_like, MutL_Trans_hPMS1_like: transducer domain, having a ribosomal S5 domain 2-like fold, found in proteins similar to human PSM1 (hPSM1) and yeast MLH2. hPSM1 and yMLH2 are members of the DNA mismatch repair (MutL/MLH1/PMS2) family. This transducer domain is homologous to the second domain of the DNA gyrase B subunit, which is known to be important in nucleotide hydrolysis and the transduction of structural signals from ATP-binding site to the DNA breakage/reunion regions of the enzymes. PMS1 forms a heterodimer with MLH1. The MLH1-PMS1 complex functions in meiosis. Loss of yMLH2 results in a small but significant decrease in spore viability and a significant increase in gene conversion frequencies. A role for hMLH1-hPMS1 in DNA mismatch repair has not been established. Mutation in hMLH1 accounts for a large fraction of Lynch syndrome (HNPCC) families, however there is no convincing evidence to support hPMS1 having a role in HNPCC predisposition.. Length = 132
 Score = 44.1 bits (104), Expect = 1e-04
 Identities = 29/129 (22%), Positives = 53/129 (41%), Gaps = 8/129 (6%)

Query: 204 NFPERISQVIGEDFINNAVELNEKSN--EITLQGYTGIPTFNRGNANQF--YVFINGRTV 259
           +  E +++V+G     N V +       +I+L+G+   P  +         ++ +N R V
Sbjct: 1   DHKEALARVLGTAVAANMVPVQSTDEDPQISLEGFLPKPGSDVSKTKSDGKFISVNSRPV 60

Query: 260 -QDKFILSTIRTAYAETIPLG---RYPVVVLLLEIDPRQVDVNVHPAKSYIRFRNPTIIR 315
              K I   +R  Y+         RYPV  L +   P  VDVN+ P K  +  +N   + 
Sbjct: 61  SLGKDIGKLLRQYYSSAYRKSSLRRYPVFFLNILCPPGLVDVNIEPDKDDVLLQNKEAVL 120

Query: 316 NFIIQSIQK 324
             +   ++ 
Sbjct: 121 QAVENLLES 129