RPSBLAST alignment for GI: 254780399 and conserved domain: cd03485
>gnl|CDD|48473 cd03485, MutL_Trans_hPMS_1_like, MutL_Trans_hPMS1_like: transducer domain, having a ribosomal S5 domain 2-like fold, found in proteins similar to human PSM1 (hPSM1) and yeast MLH2. hPSM1 and yMLH2 are members of the DNA mismatch repair (MutL/MLH1/PMS2) family. This transducer domain is homologous to the second domain of the DNA gyrase B subunit, which is known to be important in nucleotide hydrolysis and the transduction of structural signals from ATP-binding site to the DNA breakage/reunion regions of the enzymes. PMS1 forms a heterodimer with MLH1. The MLH1-PMS1 complex functions in meiosis. Loss of yMLH2 results in a small but significant decrease in spore viability and a significant increase in gene conversion frequencies. A role for hMLH1-hPMS1 in DNA mismatch repair has not been established. Mutation in hMLH1 accounts for a large fraction of Lynch syndrome (HNPCC) families, however there is no convincing evidence to support hPMS1 having a role in HNPCC predisposition.. Length = 132
Score = 44.1 bits (104), Expect = 1e-04
Identities = 29/129 (22%), Positives = 53/129 (41%), Gaps = 8/129 (6%)
Query: 204 NFPERISQVIGEDFINNAVELNEKSN--EITLQGYTGIPTFNRGNANQF--YVFINGRTV 259
+ E +++V+G N V + +I+L+G+ P + ++ +N R V
Sbjct: 1 DHKEALARVLGTAVAANMVPVQSTDEDPQISLEGFLPKPGSDVSKTKSDGKFISVNSRPV 60
Query: 260 -QDKFILSTIRTAYAETIPLG---RYPVVVLLLEIDPRQVDVNVHPAKSYIRFRNPTIIR 315
K I +R Y+ RYPV L + P VDVN+ P K + +N +
Sbjct: 61 SLGKDIGKLLRQYYSSAYRKSSLRRYPVFFLNILCPPGLVDVNIEPDKDDVLLQNKEAVL 120
Query: 316 NFIIQSIQK 324
+ ++
Sbjct: 121 QAVENLLES 129