Query gi|254780400|ref|YP_003064813.1| hypothetical protein CLIBASIA_01425 [Candidatus Liberibacter asiaticus str. psy62] Match_columns 71 No_of_seqs 109 out of 273 Neff 3.2 Searched_HMMs 33803 Date Wed Jun 1 12:31:31 2011 Command /home/congqian_1/programs/hhpred/hhsearch -i 254780400.hhm -d /home/congqian_1/database/mmdb/mmdb70.hhm No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM 1 >1iwm_A Outer membrane lipopro 69.6 3.1 9.1E-05 23.8 2.3 46 3-48 38-92 (158) 2 >1tjl_A DNAK suppressor protei 66.5 0.83 2.5E-05 27.2 -1.1 22 22-43 106-127 (132) 3 >1vet_B P14, late endosomal/ly 41.0 25 0.00075 18.3 3.0 40 8-47 70-109 (125) 4 >3iyj_F Major capsid protein L 32.6 7.6 0.00022 21.4 -0.8 24 32-55 431-454 (495) 5 >2kgo_A Uncharacterized protei 32.3 7.5 0.00022 21.5 -0.9 24 21-44 49-73 (108) 6 >1dzl_A Late major capsid prot 31.7 8.4 0.00025 21.2 -0.7 23 33-55 435-457 (505) 7 >2b8n_A Glycerate kinase, puta 30.9 42 0.0012 17.0 2.8 40 22-61 89-138 (227) 8 >1a81_A SYK kinase; complex (t 28.7 54 0.0016 16.3 3.0 23 15-37 24-49 (68) 9 >2jae_A L-amino acid oxidase; 25.5 58 0.0017 16.1 2.7 27 7-33 76-102 (179) 10 >1pya_B Pyruvoyl-dependent his 25.0 34 0.001 17.5 1.5 12 22-33 63-74 (189) 11 >2kq9_A DNAK suppressor protei 20.7 23 0.00069 18.5 -0.1 18 27-44 1-18 (32) No 1 >>1iwm_A Outer membrane lipoprotein LOLB; unclosed beta barrel, protein transport; 1.90A {Escherichia coli} (A:29-186) Probab=69.62 E-value=3.1 Score=23.78 Aligned_cols=46 Identities=24% Similarity=0.432 Sum_probs=37.1 Q ss_pred CCCCCCEEEEEECCCCEEEEECCCEEEEE---------ECCCEECHHHCCCCCHH Q ss_conf 12377669999849980992079889984---------14967067765427787 Q gi|254780400|r 3 NKVDENEASIRYKDGTFEIIRPGTYVVCA---------ITGQRIPLKKLCYWSVD 48 (71) Q Consensus 3 nkm~~~~Akl~Y~~~~F~ii~~G~yV~CA---------Vsgk~IpL~~L~YWnVe 48 (71) +-+..+.|+|.-.++...++.++.-+..| ++|-.+|++.|+||=-- T Consensus 38 ~PlG~~~~~l~~~~~~~~l~~~~g~~~~a~~~e~Ll~~~~G~~lPv~~L~~Wi~G 92 (158) T 1iwm_A 38 NPLGSTELELNAQPGNVQLVDNKGQRYTADDAEEMIGKLTGMPIPLNSLRQWILG 92 (158) T ss_dssp CTTSCEEEEEEEETTEEEEECTTSCEEEESCHHHHHHHHHSCCCCHHHHHHHTTT T ss_pred CCCCCCEEEEEECCCEEEEEECCCCEEECCCHHHHHHHHHCCCCCHHHHHHHHCC T ss_conf 7777017999985998999968998895699999999987884568999999738 No 2 >>1tjl_A DNAK suppressor protein; DKSA, transcription factor, RNA polymerase, stringent response, PPGPP, riken structural genomics/proteomics initiative; 2.00A {Escherichia coli} (A:1-132) Probab=66.45 E-value=0.83 Score=27.19 Aligned_cols=22 Identities=18% Similarity=0.440 Sum_probs=20.1 Q ss_pred EECCCEEEEEECCCEECHHHCC Q ss_conf 2079889984149670677654 Q gi|254780400|r 22 IRPGTYVVCAITGQRIPLKKLC 43 (71) Q Consensus 22 i~~G~yV~CAVsgk~IpL~~L~ 43 (71) |+.|+|=+|..+|+.||++-|. T Consensus 106 i~~G~YG~C~~Cge~I~~~RL~ 127 (132) T 1tjl_A 106 VEDEDFGYCESCGVEIGIRRLE 127 (132) T ss_dssp HHTTCCSBCSSSSCBCCHHHHH T ss_pred HHCCCCCEECCCCCCCCHHHHH T ss_conf 9779999619878806799983 No 3 >>1vet_B P14, late endosomal/lysosomal MP1 interacting protein; profilin, scaffold, adaptor, signaling protein/protein binding complex; 1.90A {Mus musculus} (B:) Probab=41.02 E-value=25 Score=18.28 Aligned_cols=40 Identities=13% Similarity=0.182 Sum_probs=36.2 Q ss_pred CEEEEEECCCCEEEEECCCEEEEEECCCEECHHHCCCCCH Q ss_conf 6699998499809920798899841496706776542778 Q gi|254780400|r 8 NEASIRYKDGTFEIIRPGTYVVCAITGQRIPLKKLCYWSV 47 (71) Q Consensus 8 ~~Akl~Y~~~~F~ii~~G~yV~CAVsgk~IpL~~L~YWnV 47 (71) +...++|..|..-+..-|+.++|.++++...|..++|=-. T Consensus 70 ~~~~ie~~~g~v~i~~~g~~~L~v~~~~~~~lG~i~~~~~ 109 (125) T 1vet_B 70 KFILMDCMEGRVAITRVANLLLCMYAKETVGFGMLKAKAQ 109 (125) T ss_dssp CEEEEEETTEEEEEEEETTEEEEEEECTTSCHHHHHHHHH T ss_pred EEEEEEECCCEEEEEECCCEEEEEEECCCCCCHHHHHHHH T ss_conf 8999993897999999676169999469887058999999 No 4 >>3iyj_F Major capsid protein L1; bovine papillomavirus BPV1, single particle cryo-EM, high resolution, late protein, virion; 4.20A {Bovine papillomavirus type 1} (F:) Probab=32.60 E-value=7.6 Score=21.44 Aligned_cols=24 Identities=17% Similarity=0.430 Sum_probs=20.2 Q ss_pred ECCCEECHHHCCCCCHHHCCCCCC Q ss_conf 149670677654277878072259 Q gi|254780400|r 32 ITGQRIPLKKLCYWSVDRQVPYAN 55 (71) Q Consensus 32 Vsgk~IpL~~L~YWnVe~QEaY~s 55 (71) -..++-|.+.+++|+||+.|-..+ T Consensus 431 p~~k~DPy~~~~FW~VDL~ekfS~ 454 (495) T 3iyj_F 431 IPAKEDPYAGFKFWNIDLKEKLSL 454 (495) T ss_dssp TTSCCCGGGSSCCEEEECSSSCBS T ss_pred CCCCCCCCCCCCEEEECCCHHCCC T ss_conf 988889756772145446210354 No 5 >>2kgo_A Uncharacterized protein YBII; Zn finger, partially disordered, structural proteomics, metal-binding, zinc, zinc-finger; NMR {Escherichia coli k-12} (A:) Probab=32.33 E-value=7.5 Score=21.47 Aligned_cols=24 Identities=25% Similarity=0.300 Sum_probs=20.3 Q ss_pred EEECC-CEEEEEECCCEECHHHCCC Q ss_conf 92079-8899841496706776542 Q gi|254780400|r 21 IIRPG-TYVVCAITGQRIPLKKLCY 44 (71) Q Consensus 21 ii~~G-~yV~CAVsgk~IpL~~L~Y 44 (71) -|+.| +|=.|-..|++||++-|.- T Consensus 49 ri~~g~tyG~C~~Cg~~I~~~RL~A 73 (108) T 2kgo_A 49 EIPRGESLDECEECGAPIPQARREA 73 (108) T ss_dssp CSCSSSCCSBCTTTCCBCCHHHHHH T ss_pred HHHCCCCCCCHHHCCCCCCHHHHHC T ss_conf 8865997888211299324999960 No 6 >>1dzl_A Late major capsid protein L1; icosahedral; 3.50A {Human papillomavirus type 16} (A:) Probab=31.73 E-value=8.4 Score=21.16 Aligned_cols=23 Identities=26% Similarity=0.615 Sum_probs=19.9 Q ss_pred CCCEECHHHCCCCCHHHCCCCCC Q ss_conf 49670677654277878072259 Q gi|254780400|r 33 TGQRIPLKKLCYWSVDRQVPYAN 55 (71) Q Consensus 33 sgk~IpL~~L~YWnVe~QEaY~s 55 (71) ..++-|.+.+++|+||+.|-..+ T Consensus 435 ~ek~DPy~~~~FW~VDL~ekfS~ 457 (505) T 1dzl_A 435 APKEDPLKKYTFWEVNLKEKFSA 457 (505) T ss_dssp CCCCCTTTTSCCEEEECTTCCBS T ss_pred CCCCCCCCCCCEEEECCCCCCCC T ss_conf 88999756772035447210354 No 7 >>2b8n_A Glycerate kinase, putative; TM1585, glycerate kinase (EC 2.7.1.31), structural genomics, joint center for structural genomics, JCSG; 2.53A {Thermotoga maritima MSB8} (A:35-261) Probab=30.94 E-value=42 Score=16.98 Aligned_cols=40 Identities=13% Similarity=0.132 Sum_probs=32.9 Q ss_pred EECCCEEEEEECC----------CEECHHHCCCCCHHHCCCCCCHHHHHH Q ss_conf 2079889984149----------670677654277878072259999999 Q gi|254780400|r 22 IRPGTYVVCAITG----------QRIPLKKLCYWSVDRQVPYANAEASFE 61 (71) Q Consensus 22 i~~G~yV~CAVsg----------k~IpL~~L~YWnVe~QEaY~s~e~~~~ 61 (71) +.++|.|+|-+|| ..|+|+++.-+|-.+...=++.++-.. T Consensus 89 ~~~~dlvl~LiSGGgSALl~~P~~gitL~dk~~~~~~Ll~sGa~I~eiN~ 138 (227) T 2b8n_A 89 LNENDTVLFLLSGGGSSLFELPLEGVSLEEIQKLTSALLKSGASIEEINT 138 (227) T ss_dssp CCTTCEEEEEECTTHHHHSCCBCTTCCHHHHHHHHHHHHHTTCCHHHHHH T ss_pred CCCCCEEEEEECCCCCCCHHCCCCCCCHHHHHHHHHHHHHCCCCHHHHHH T ss_conf 89987489985288540110489999999999999999858998799999 No 8 >>1a81_A SYK kinase; complex (transferase/peptide), SYK, kinase, SH2 domain; HET: PTR; 3.00A {Homo sapiens} (A:157-224) Probab=28.68 E-value=54 Score=16.30 Aligned_cols=23 Identities=26% Similarity=0.707 Sum_probs=19.2 Q ss_pred CCCCEEEE---ECCCEEEEEECCCEE Q ss_conf 49980992---079889984149670 Q gi|254780400|r 15 KDGTFEII---RPGTYVVCAITGQRI 37 (71) Q Consensus 15 ~~~~F~ii---~~G~yV~CAVsgk~I 37 (71) .||+|-|- .+|+||+|-.++.+| T Consensus 24 ~~G~FLVR~S~~~~~y~Lsv~~~~~v 49 (68) T 1a81_A 24 TNGKFLIRARDNNGSYALCLLHEGKV 49 (68) T ss_dssp CTTCEEEEECSSSSCEEEEEEETTEE T ss_pred CCCCEEEEECCCCCCEEEEEEECCEE T ss_conf 88868987269999889999889978 No 9 >>2jae_A L-amino acid oxidase; oxidoreductase, dimerisation mode, hydride transfer mechanism, GR2-family, flavoenzyme, FAD containing; HET: FAD; 1.25A {Rhodococcus opacus} PDB: 2jb1_A* 2jb2_A* 2jb3_A* (A:1-46,A:238-314,A:434-489) Probab=25.49 E-value=58 Score=16.14 Aligned_cols=27 Identities=19% Similarity=0.475 Sum_probs=19.6 Q ss_pred CCEEEEEECCCCEEEEECCCEEEEEEC Q ss_conf 766999984998099207988998414 Q gi|254780400|r 7 ENEASIRYKDGTFEIIRPGTYVVCAIT 33 (71) Q Consensus 7 ~~~Akl~Y~~~~F~ii~~G~yV~CAVs 33 (71) +....+.|.+++=+..-..|||+||+. T Consensus 76 ~~~V~Vt~~~gg~~~t~~aD~VI~aip 102 (179) T 2jae_A 76 SEGVTVEYTAGGSKKSITADYAICTIP 102 (179) T ss_dssp TTEEEEEEEETTEEEEEEESEEEECSC T ss_pred CCCCCEEECCCCCCCCCCCCCCCCCCC T ss_conf 543101211687653100122212561 No 10 >>1pya_B Pyruvoyl-dependent histidine decarboxylase (L- histidine carboxylase); carboxy-lyase; 2.50A {Lactobacillus SP} (B:1-189) Probab=24.97 E-value=34 Score=17.50 Aligned_cols=12 Identities=42% Similarity=0.980 Sum_probs=9.4 Q ss_pred EECCCEEEEEEC Q ss_conf 207988998414 Q gi|254780400|r 22 IRPGTYVVCAIT 33 (71) Q Consensus 22 i~~G~yV~CAVs 33 (71) .-||.||+||-- T Consensus 63 ~~PGa~viCAnK 74 (189) T 1pya_B 63 PAPGSFIVCANK 74 (189) T ss_dssp BCTTCEEEEEEE T ss_pred CCCCCEEEECCC T ss_conf 899756773046 No 11 >>2kq9_A DNAK suppressor protein; zinc binding protein, structural genomics, PSI-2, protein structure initiative; NMR {Agrobacterium tumefaciens str} (A:81-112) Probab=20.65 E-value=23 Score=18.49 Aligned_cols=18 Identities=28% Similarity=0.508 Sum_probs=14.7 Q ss_pred EEEEEECCCEECHHHCCC Q ss_conf 899841496706776542 Q gi|254780400|r 27 YVVCAITGQRIPLKKLCY 44 (71) Q Consensus 27 yV~CAVsgk~IpL~~L~Y 44 (71) |=+|-..|++||++-|.- T Consensus 1 YG~C~~Cg~~I~~~RL~a 18 (32) T 2kq9_A 1 FGTCVKCGKRISEDRLKA 18 (32) T ss_dssp CSEETTTTEECCHHHHHH T ss_pred CCCCHHCCCCCCHHHHHC T ss_conf 584023199068999707 Done!