RPS-BLAST 2.2.22 [Sep-27-2009]

Database: CddA 
           21,609 sequences; 6,263,737 total letters

Searching..................................................done

Query= gi|254780400|ref|YP_003064813.1| hypothetical protein
CLIBASIA_01425 [Candidatus Liberibacter asiaticus str. psy62]
         (71 letters)



>gnl|CDD|33695 COG3908, COG3908, Uncharacterized protein conserved in bacteria
          [Function unknown].
          Length = 77

 Score = 78.1 bits (192), Expect = 4e-16
 Identities = 32/62 (51%), Positives = 44/62 (70%)

Query: 9  EASIRYKDGTFEIIRPGTYVVCAITGQRIPLKKLCYWSVDRQVPYANAEASFEAEKISGK 68
          EA IRY DG F+++ PG++V+CA+TG+ IPL +L YWSV RQ  Y +A AS E E+ +G 
Sbjct: 12 EAVIRYLDGDFQVVSPGSFVLCAVTGKPIPLDELRYWSVARQEAYVDAAASLEREREAGP 71

Query: 69 IP 70
            
Sbjct: 72 EL 73


>gnl|CDD|31920 COG1734, DksA, DnaK suppressor protein [Signal transduction
           mechanisms].
          Length = 120

 Score = 26.5 bits (58), Expect = 1.7
 Identities = 13/49 (26%), Positives = 19/49 (38%), Gaps = 6/49 (12%)

Query: 6   DENEASIRYKDGTFEIIRPGTYVVCAITGQRIPLKKLCYWSVDRQVPYA 54
           D     +R  +   + I  GTY +C   G+ IP  +L         P A
Sbjct: 59  DRERKLLRKIESALDRIEEGTYGICEECGEPIPEARL------EARPTA 101


>gnl|CDD|145523 pfam02421, FeoB_N, Ferrous iron transport protein B.  Escherichia
          coli has an iron(II) transport system (feo) which may
          make an important contribution to the iron supply of
          the cell under anaerobic conditions. FeoB has been
          identified as part of this transport system. FeoB is a
          large 700-800 amino acid integral membrane protein. The
          N terminus contains a P-loop motif suggesting that iron
          transport may be ATP dependent.
          Length = 188

 Score = 25.5 bits (57), Expect = 3.1
 Identities = 10/24 (41%), Positives = 15/24 (62%), Gaps = 1/24 (4%)

Query: 5  VDENEASIRYKDGTFEIIR-PGTY 27
          V++ E + +YK    EI+  PGTY
Sbjct: 34 VEKKEGTFKYKGYEIEIVDLPGTY 57


>gnl|CDD|35586 KOG0365, KOG0365, KOG0365, Beta subunit of farnesyltransferase
           [Posttranslational modification, protein turnover,
           chaperones].
          Length = 423

 Score = 25.3 bits (55), Expect = 3.6
 Identities = 11/36 (30%), Positives = 18/36 (50%), Gaps = 7/36 (19%)

Query: 25  GTYVVCAITG-------QRIPLKKLCYWSVDRQVPY 53
           G Y  CA+          ++ L+KL  W+V RQ+ +
Sbjct: 248 GGYTFCALAALALLNEMDQLNLEKLLEWAVRRQMRF 283


>gnl|CDD|185742 cd09001, GH43_XYL_2, Glycosyl hydrolase family 43,
           beta-D-xylosidase.  This glycosyl hydrolase family 43
           (GH43) includes mostly enzymes that have been
           characterized to have beta-1,4-xylosidase
           (beta-D-xylosidase;xylan 1,4-beta-xylosidase; EC
           3.2.1.37) activity. They are part of an array of
           hemicellulases that are involved in the final breakdown
           of plant cell-wall whereby they degrade xylan. They
           hydrolyze beta-1,4 glycosidic bonds between two xylose
           units in short xylooligosaccharides. These are inverting
           enzymes (i.e. they invert the stereochemistry of the
           anomeric carbon atom of the substrate) that have an
           aspartate as the catalytic general base, a glutamate as
           the catalytic general acid and another aspartate that is
           responsible for pKa modulation and orienting the
           catalytic acid. A common structural feature of GH43
           enzymes is a 5-bladed beta-propeller domain that
           contains the catalytic acid and catalytic base. A long
           V-shaped groove, partially enclosed at one end, forms a
           single extended substrate-binding surface across the
           face of the propeller.
          Length = 269

 Score = 24.8 bits (55), Expect = 5.5
 Identities = 10/26 (38%), Positives = 14/26 (53%), Gaps = 4/26 (15%)

Query: 10  ASIRYKDGTFEIIRP----GTYVVCA 31
            S+RY +GTF +       GTY+  A
Sbjct: 79  PSLRYHNGTFYVFFCTNTGGTYIYTA 104


>gnl|CDD|39171 KOG3968, KOG3968, KOG3968, Atrazine chlorohydrolase/guanine
           deaminase [Nucleotide transport and metabolism,
           Secondary metabolites biosynthesis, transport and
           catabolism].
          Length = 439

 Score = 24.9 bits (54), Expect = 5.6
 Identities = 10/36 (27%), Positives = 13/36 (36%), Gaps = 2/36 (5%)

Query: 29  VCAITGQRIPLKKLCYWSVDRQVPY--ANAEASFEA 62
                GQR  + K+C       VP      E S E+
Sbjct: 154 AAIRAGQRALIGKVCMDCNAHAVPKGVETTEESIES 189


>gnl|CDD|31094 COG0751, GlyS, Glycyl-tRNA synthetase, beta subunit [Translation,
           ribosomal structure and biogenesis].
          Length = 691

 Score = 24.4 bits (53), Expect = 6.8
 Identities = 8/30 (26%), Positives = 15/30 (50%)

Query: 11  SIRYKDGTFEIIRPGTYVVCAITGQRIPLK 40
           S+R+       IRP  ++V  +  + IP +
Sbjct: 149 SMRWGSKDVRFIRPIHWIVALLGDEVIPFE 178


>gnl|CDD|38108 KOG2897, KOG2897, KOG2897, DNA-binding protein YL1 and related
           proteins [General function prediction only].
          Length = 390

 Score = 24.3 bits (52), Expect = 7.3
 Identities = 16/55 (29%), Positives = 23/55 (41%), Gaps = 5/55 (9%)

Query: 5   VDENEASIRYKDGTFEIIRPGTYVVCAITGQRIPLKKLCYWSVDRQVPYANAEAS 59
            +  EAS   +  T    +P   VVC ITG     +   Y      +PY+ A+A 
Sbjct: 271 TESGEASFLSEFPTKSPPKPRERVVCVITG-----RPARYLDPVTGLPYSTAQAF 320


  Database: CddA
    Posted date:  Feb 4, 2011  9:38 PM
  Number of letters in database: 6,263,737
  Number of sequences in database:  21,609
  
Lambda     K      H
   0.318    0.136    0.412 

Gapped
Lambda     K      H
   0.267   0.0846    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 21609
Number of Hits to DB: 852,223
Number of extensions: 34420
Number of successful extensions: 81
Number of sequences better than 10.0: 1
Number of HSP's gapped: 81
Number of HSP's successfully gapped: 11
Length of query: 71
Length of database: 6,263,737
Length adjustment: 42
Effective length of query: 29
Effective length of database: 5,356,159
Effective search space: 155328611
Effective search space used: 155328611
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 51 (23.2 bits)