RPS-BLAST 2.2.22 [Sep-27-2009] Database: scop70_1_75 13,730 sequences; 2,407,596 total letters Searching..................................................done Query= gi|254780400|ref|YP_003064813.1| hypothetical protein CLIBASIA_01425 [Candidatus Liberibacter asiaticus str. psy62] (71 letters) >d2tnfa_ b.22.1.1 (A:) Tumor necrosis factor (TNF) {Mouse (Mus musculus) [TaxId: 10090]} Length = 148 Score = 24.2 bits (52), Expect = 2.9 Identities = 5/25 (20%), Positives = 10/25 (40%) Query: 12 IRYKDGTFEIIRPGTYVVCAITGQR 36 + KD + G Y+V + + Sbjct: 33 MDLKDNQLVVPADGLYLVYSQVLFK 57 >d1yova1 c.111.1.2 (A:6-534) Amyloid beta precursor protein-binding protein 1, APPBP1 {Human (Homo sapiens) [TaxId: 9606]} Length = 529 Score = 24.2 bits (52), Expect = 3.5 Identities = 4/18 (22%), Positives = 7/18 (38%) Query: 28 VVCAITGQRIPLKKLCYW 45 V+ IT Q + + Sbjct: 500 VIKIITKQFVIFNNTYIY 517 >d2h6fb1 a.102.4.3 (B:521-921) Protein farnesyltransferase, beta-subunit {Human (Homo sapiens) [TaxId: 9606]} Length = 401 Score = 23.4 bits (50), Expect = 5.4 Identities = 9/36 (25%), Positives = 14/36 (38%), Gaps = 7/36 (19%) Query: 25 GTYVVCAITG-------QRIPLKKLCYWSVDRQVPY 53 G Y C + + + LK L W RQ+ + Sbjct: 229 GGYTFCGLAALVILKRERSLNLKSLLQWVTSRQMRF 264 >d1s55a1 b.22.1.1 (A:161-316) TRANCE/RANKL cytokine {Mouse (Mus musculus) [TaxId: 10090]} Length = 156 Score = 23.1 bits (49), Expect = 6.9 Identities = 3/19 (15%), Positives = 9/19 (47%) Query: 11 SIRYKDGTFEIIRPGTYVV 29 ++ +G + + G Y + Sbjct: 37 NMTLSNGKLRVNQDGFYYL 55 Database: scop70_1_75 Posted date: Mar 27, 2010 6:21 PM Number of letters in database: 2,407,596 Number of sequences in database: 13,730 Lambda K H 0.318 0.136 0.412 Gapped Lambda K H 0.267 0.0562 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 13730 Number of Hits to DB: 279,522 Number of extensions: 10585 Number of successful extensions: 30 Number of sequences better than 10.0: 1 Number of HSP's gapped: 30 Number of HSP's successfully gapped: 5 Length of query: 71 Length of database: 2,407,596 Length adjustment: 39 Effective length of query: 32 Effective length of database: 1,872,126 Effective search space: 59908032 Effective search space used: 59908032 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits) S2: 47 (22.3 bits)