RPS-BLAST 2.2.22 [Sep-27-2009]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= gi|254780400|ref|YP_003064813.1| hypothetical protein
CLIBASIA_01425 [Candidatus Liberibacter asiaticus str. psy62]
         (71 letters)



>d2tnfa_ b.22.1.1 (A:) Tumor necrosis factor (TNF) {Mouse (Mus
          musculus) [TaxId: 10090]}
          Length = 148

 Score = 24.2 bits (52), Expect = 2.9
 Identities = 5/25 (20%), Positives = 10/25 (40%)

Query: 12 IRYKDGTFEIIRPGTYVVCAITGQR 36
          +  KD    +   G Y+V +    +
Sbjct: 33 MDLKDNQLVVPADGLYLVYSQVLFK 57


>d1yova1 c.111.1.2 (A:6-534) Amyloid beta precursor protein-binding
           protein 1, APPBP1 {Human (Homo sapiens) [TaxId: 9606]}
          Length = 529

 Score = 24.2 bits (52), Expect = 3.5
 Identities = 4/18 (22%), Positives = 7/18 (38%)

Query: 28  VVCAITGQRIPLKKLCYW 45
           V+  IT Q +       +
Sbjct: 500 VIKIITKQFVIFNNTYIY 517


>d2h6fb1 a.102.4.3 (B:521-921) Protein farnesyltransferase,
           beta-subunit {Human (Homo sapiens) [TaxId: 9606]}
          Length = 401

 Score = 23.4 bits (50), Expect = 5.4
 Identities = 9/36 (25%), Positives = 14/36 (38%), Gaps = 7/36 (19%)

Query: 25  GTYVVCAITG-------QRIPLKKLCYWSVDRQVPY 53
           G Y  C +         + + LK L  W   RQ+ +
Sbjct: 229 GGYTFCGLAALVILKRERSLNLKSLLQWVTSRQMRF 264


>d1s55a1 b.22.1.1 (A:161-316) TRANCE/RANKL cytokine {Mouse (Mus
          musculus) [TaxId: 10090]}
          Length = 156

 Score = 23.1 bits (49), Expect = 6.9
 Identities = 3/19 (15%), Positives = 9/19 (47%)

Query: 11 SIRYKDGTFEIIRPGTYVV 29
          ++   +G   + + G Y +
Sbjct: 37 NMTLSNGKLRVNQDGFYYL 55


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.318    0.136    0.412 

Gapped
Lambda     K      H
   0.267   0.0562    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 279,522
Number of extensions: 10585
Number of successful extensions: 30
Number of sequences better than 10.0: 1
Number of HSP's gapped: 30
Number of HSP's successfully gapped: 5
Length of query: 71
Length of database: 2,407,596
Length adjustment: 39
Effective length of query: 32
Effective length of database: 1,872,126
Effective search space: 59908032
Effective search space used: 59908032
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 47 (22.3 bits)