BLASTP 2.2.22 [Sep-27-2009]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= gi|254780400|ref|YP_003064813.1| hypothetical protein
CLIBASIA_01425 [Candidatus Liberibacter asiaticus str. psy62]
         (71 letters)

Database: las_proteome 
           1233 sequences; 328,796 total letters

Searching...................................................done



>gi|254780400|ref|YP_003064813.1| hypothetical protein CLIBASIA_01425 [Candidatus Liberibacter
          asiaticus str. psy62]
          Length = 71

 Score =  149 bits (375), Expect = 1e-38,   Method: Compositional matrix adjust.
 Identities = 71/71 (100%), Positives = 71/71 (100%)

Query: 1  MYNKVDENEASIRYKDGTFEIIRPGTYVVCAITGQRIPLKKLCYWSVDRQVPYANAEASF 60
          MYNKVDENEASIRYKDGTFEIIRPGTYVVCAITGQRIPLKKLCYWSVDRQVPYANAEASF
Sbjct: 1  MYNKVDENEASIRYKDGTFEIIRPGTYVVCAITGQRIPLKKLCYWSVDRQVPYANAEASF 60

Query: 61 EAEKISGKIPY 71
          EAEKISGKIPY
Sbjct: 61 EAEKISGKIPY 71


>gi|254781062|ref|YP_003065475.1| putative aminotransferase involved in iron-sulfur cluster
           biogenesis [Candidatus Liberibacter asiaticus str.
           psy62]
          Length = 406

 Score = 22.3 bits (46), Expect = 1.7,   Method: Composition-based stats.
 Identities = 7/21 (33%), Positives = 14/21 (66%)

Query: 32  ITGQRIPLKKLCYWSVDRQVP 52
           + G  IP+K++C  + +R +P
Sbjct: 176 VLGTVIPIKEICRIAHERNIP 196


>gi|254780831|ref|YP_003065244.1| hypothetical protein CLIBASIA_03620 [Candidatus Liberibacter
           asiaticus str. psy62]
          Length = 341

 Score = 21.6 bits (44), Expect = 2.6,   Method: Composition-based stats.
 Identities = 10/19 (52%), Positives = 12/19 (63%), Gaps = 2/19 (10%)

Query: 53  YANAEASFEAEKISGKIPY 71
           + N  A FEAEKI   IP+
Sbjct: 280 FGNGGARFEAEKIG--IPF 296


>gi|254780451|ref|YP_003064864.1| aconitate hydratase [Candidatus Liberibacter asiaticus str. psy62]
          Length = 896

 Score = 20.0 bits (40), Expect = 7.5,   Method: Compositional matrix adjust.
 Identities = 9/26 (34%), Positives = 14/26 (53%), Gaps = 4/26 (15%)

Query: 7   ENEASIRYKDGTFEIIRPGTYVVCAI 32
           E+   I Y DGTF+ +     ++C I
Sbjct: 852 ESTLEIHYSDGTFKCVP----IICCI 873


>gi|254780374|ref|YP_003064787.1| flagellar basal body L-ring protein [Candidatus Liberibacter
           asiaticus str. psy62]
          Length = 238

 Score = 20.0 bits (40), Expect = 8.1,   Method: Composition-based stats.
 Identities = 9/23 (39%), Positives = 13/23 (56%)

Query: 2   YNKVDENEASIRYKDGTFEIIRP 24
           Y+K+ E   S   K  T E++RP
Sbjct: 203 YDKIAEARISYGGKGRTTELLRP 225


  Database: las_proteome
    Posted date:  Jun 5, 2011  6:30 PM
  Number of letters in database: 328,796
  Number of sequences in database:  1233
  
Lambda     K      H
   0.318    0.136    0.412 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 44,998
Number of Sequences: 1233
Number of extensions: 1438
Number of successful extensions: 6
Number of sequences better than 100.0: 6
Number of HSP's better than 100.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6
length of query: 71
length of database: 328,796
effective HSP length: 42
effective length of query: 29
effective length of database: 277,010
effective search space:  8033290
effective search space used:  8033290
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 39 (20.8 bits)
S2: 31 (16.5 bits)