HHsearch alignment for GI: 254780401 and conserved domain: PRK00652
>PRK00652 lpxK tetraacyldisaccharide 4'-kinase; Reviewed.
Probab=100.00 E-value=0 Score=701.29 Aligned_cols=313 Identities=35% Similarity=0.591 Sum_probs=272.1
Q ss_pred CCCCCCCCCCCHHHHHHHHHHHHHHHHHHHH---HHHC--CCCCCCCCEEEECCEEECCCCCCHHHHHHHHHHHHCCCCE
Q ss_conf 8873322488999999999999999999999---7404--6433889889982300078887489999999985247315
Q gi|254780401|r 3 KSPLFWWKARGFYSFFLYPISWIYSFISSKL---MKRG--QRLHAPIPVICVGGFVMGGTGKTPTALAIAKAVIDKNLKP 77 (338)
Q Consensus 3 ~~p~fw~~~~~~~~~lL~Pls~iy~~~~~~~---~~~~--~~~~~~~pVI~VGNitvGGtGKTP~v~~l~~~l~~~g~~~ 77 (338)
T Consensus 4 ~~p~fW~-~~~~~~~lL~PlS~ly~~~~~lr~~~y~~~~~~~~~~~vpVI~VGNitvGGtGKTP~v~~la~~l~~~g~~~ 82 (334)
T PRK00652 4 MIPRFWY-GPSPLWRLLLPLSWLYGLVSGLIRLSYRLGLARPYRFPVPVISVGNLTVGGNGKTPVVIWLAEQLQARGVKV 82 (334)
T ss_pred CCHHHHC-CCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCEEEEECEEECCCCHHHHHHHHHHHHHHCCCCE
T ss_conf 6434308-998589999999999999999999998605676555899899990888788777999999999999769936
Q ss_pred EEEEECCCCCCCCCEEEECCCCCHHHHCCHHHHHHHC--CCCCCCCCHHHHHHHHCCCCCCEEEECCCCCCCCCCCEEEE
Q ss_conf 9876045787777558714567887704212332205--76346520122566410245747997183223441230699
Q gi|254780401|r 78 GFLSRGYGRKSRISFRVDLEKHSAYDVGDEPLLLARR--AVTIVTSDRKIGVQMLLQEGVDIIIMDDGFHSADLQADFSL 155 (338)
Q Consensus 78 ~ilsRGYg~~~~~~~~v~~~~~~~~~vGDEp~lla~~--~pv~V~~~R~~~~~~~~~~~~diiIlDDGfQh~~l~rdl~I 155 (338)
T Consensus 83 ~IlSRGYg~~~~~~~~v~~~~~~~~~vGDEpllla~~~~~~v~V~~~R~~~~~~l~~~~~dviIlDDGfQh~~l~rdl~I 162 (334)
T PRK00652 83 GVVSRGYGGKSKGYPLVLPADTTAAEVGDEPVLIAQRTGAPVAVSPDRVKAIKALLALGADIIILDDGLQHYRLHRDFEI 162 (334)
T ss_pred EEEECCCCCCCCCCEEEECCCCCHHHCCCHHHHHHHCCCCCEEEECCHHHHHHHHHHCCCCEEEECCCCCCCCCCCCEEE
T ss_conf 78734667656787276179998355186899985178983999566899999999659999997476656644688799
Q ss_pred EEECCCCCCCCCCCCCCHHHHHCCHHHHHHHHHHHHCCCCHHHHHHHC------CCCHHHHHHHHCCCCCCCCCEEEEEE
Q ss_conf 996184335665537613652100255665145442044124577631------35011122220132111686389874
Q gi|254780401|r 156 IVVNSHRGLGNGLVFPAGPLRVPLSRQLSYVDAILYVGNKKNVISSIK------NKSVYFAKLKPRLTFDLSGKKVLAFS 229 (338)
Q Consensus 156 vl~d~~~~~gn~~llPaGpLREp~~~~l~rad~vi~~~~~~~~~~~~~------~~~i~~~~~~~~~~~~l~~k~v~afs 229 (338)
T Consensus 163 vlid~~~~fgn~~llP~GpLREp~~-~l~rAD~ii~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~k~v~afs 237 (334)
T PRK00652 163 VVVDGQRRFGNGWLLPAGPLREPPS-RLKSADAVIVNGGDAQEGEIPMRLAPGAAVNLR----TGESRDVLKGKRVVAFA 237 (334)
T ss_pred EEECCCCCCCCCCCCCCCCCCCCHH-HHCCCCEEEEECCCCCCHHHHHHHCCCCCEECC----CCCCCCCCCCCEEEEEE
T ss_conf 9974776788986775865658964-761468999938854311045553656636766----65546335798189999
Q ss_pred CCCCHHHHHHHHHHHCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCEEEECHHHHHHCCCCCCCCHHHHCCEEEEEEE
Q ss_conf 15535789998874010000122143323489899999999756479879985466343823334411122051788769
Q gi|254780401|r 230 GIADTEKFFTTVRQLGALIEQCYSFGDHAHLSDKKIAYLLDQAQQKGLILVTTAKDAMRLHKRPGRAEEIFAKSMVIEVD 309 (338)
Q Consensus 230 GIa~P~~F~~~L~~~g~~i~~~~~fpDHh~ys~~dl~~i~~~a~~~~~~iiTTEKD~VKL~~~~~~~~~l~~~~~~l~i~ 309 (338)
T Consensus 238 GIanP~~F~~~L~~~g~~i~~~~~fpDHh~ys~~dl~~i~~~a~~~~~~iiTTEKD~VKL~~~~~------~~i~~lpi~ 311 (334)
T PRK00652 238 GIGHPPRFFATLRNLGIEVVGTVAFPDHQSFTKADLEALVSLAQRQGLSLLMTEKDAVKCRAFAE------PNWWYLPVD 311 (334)
T ss_pred ECCCHHHHHHHHHHCCCEEEEEEECCCCCCCCHHHHHHHHHHHHHCCCEEEECCHHHHHCCHHHH------CCEEEEEEE
T ss_conf 44886999999997699273425779866689999999999998289938985567765754542------785999999
Q ss_pred EEECC--HHHHHHHHHHHHH
Q ss_conf 89578--7899999999999
Q gi|254780401|r 310 IVFEN--PDDLTNLVEMTVV 327 (338)
Q Consensus 310 ~~~~~--~~~l~~~l~~~i~ 327 (338)
T Consensus 312 ~~~~~~~~~~l~~ki~~~~~ 331 (334)
T PRK00652 312 AELSGDEPDKLLEKIDSLIK 331 (334)
T ss_pred EEECHHHHHHHHHHHHHHHH
T ss_conf 99897789999999999986