HHsearch alignment for GI: 254780401 and conserved domain: PRK04537
>PRK04537 ATP-dependent RNA helicase RhlB; Provisional.
Probab=94.04 E-value=0.32 Score=29.29 Aligned_cols=215 Identities=20% Similarity=0.248 Sum_probs=103.9
Q ss_pred CCCCCCHHHHHHHHHHHHCCCCEEEEEECCCCCCCCCEEEECCCCCHHHHCCHHHHHHHCCC----CCCCCCHHHHHHHH
Q ss_conf 78887489999999985247315987604578777755871456788770421233220576----34652012256641
Q gi|254780401|r 55 GGTGKTPTALAIAKAVIDKNLKPGFLSRGYGRKSRISFRVDLEKHSAYDVGDEPLLLARRAV----TIVTSDRKIGVQML 130 (338)
Q Consensus 55 GGtGKTP~v~~l~~~l~~~g~~~~ilsRGYg~~~~~~~~v~~~~~~~~~vGDEp~lla~~~p----v~V~~~R~~~~~~~ 130 (338)
T Consensus 55 TGSGKTL--AYlLPiL~~Ll~~~~l~~~~--~~~p~aLILvPTRELA~QI~~~~~~l~~~~~lr~~~l~GG~~~~~q~~~ 130 (574)
T PRK04537 55 TGTGKTL--AFLVAVMNRLLSRPALADRK--PEDPRALILAPTRELAIQIHKDAVKFGADLGLRFALVYGGVDYDKQREL 130 (574)
T ss_pred CCCHHHH--HHHHHHHHHHHHCCCCCCCC--CCCCEEEEECCCHHHHHHHHHHHHHHHCCCCCEEEEEECCCCHHHHHHH
T ss_conf 9888999--99999999998374434577--8996199977989999999999999864589779999799668899998
Q ss_pred CCCCCCEEEECCC-----C-CCCCC-CCEEEEEEECCCCCCCCCCCCCCHHHHHCCHHHHHHH------HHHHHCCC-CH
Q ss_conf 0245747997183-----2-23441-2306999961843356655376136521002556651------45442044-12
Q gi|254780401|r 131 LQEGVDIIIMDDG-----F-HSADL-QADFSLIVVNSHRGLGNGLVFPAGPLRVPLSRQLSYV------DAILYVGN-KK 196 (338)
Q Consensus 131 ~~~~~diiIlDDG-----f-Qh~~l-~rdl~Ivl~d~~~~~gn~~llPaGpLREp~~~~l~ra------d~vi~~~~-~~ 196 (338)
T Consensus 131 L~~g~dIVVaTPGRLld~L~~~~~~~L~~vk~LVLDEAD-----~LLd~gF~~d-i~~IL~~lP~~~~rQ~iLfSATl~~ 204 (574)
T PRK04537 131 LQQGVDVIIATPGRLIDYVKQHKVVSLHACEICVLDEAD-----RMFDLGFIKD-IRFLLRRMPERGTRQTLLFSATLSH 204 (574)
T ss_pred HCCCCCEEEECHHHHHHHHHHCCCCCCCCEEEEEECCCH-----HHHCCCCHHH-HHHHHHHCCCCCCCEEEEEEECCCH
T ss_conf 735999899898999999981798653331589962732-----6542877999-9999996665568558999832777
Q ss_pred HH---HHHHCCC------------------CHHHHHH--HHC----CCCCCCCCEEEEEE-CCCCHHHHHHHHHHHCCCC
Q ss_conf 45---7763135------------------0111222--201----32111686389874-1553578999887401000
Q gi|254780401|r 197 NV---ISSIKNK------------------SVYFAKL--KPR----LTFDLSGKKVLAFS-GIADTEKFFTTVRQLGALI 248 (338)
Q Consensus 197 ~~---~~~~~~~------------------~i~~~~~--~~~----~~~~l~~k~v~afs-GIa~P~~F~~~L~~~g~~i 248 (338)
T Consensus 205 ~V~~la~~~l~~P~~i~v~~~~~~~~~I~Q~~~~~~~~~K~~~L~~LL~~~~~~k~IIF~nT~~~ve~l~~~L~~~g~~v 284 (574)
T PRK04537 205 RVLELAYEHMNEPEKLVVETETITAARVRQRIYFPSDEEKQTLLLGLLSRSEGARTMVFVNTKAFVERVARTLERHGYRV 284 (574)
T ss_pred HHHHHHHHHCCCCEEEEECCCCCCCCCEEEEEEECCHHHHHHHHHHHHHHCCCCCCEEECCHHHHHHHHHHHHHHCCCCE
T ss_conf 99999999779986999656654577603899977778999999999972677651153341899999999999779968
Q ss_pred CCCCCCCCCCCCCHHHHHHHHHHHHHCCC-EEEECHH
Q ss_conf 01221433234898999999997564798-7998546
Q gi|254780401|r 249 EQCYSFGDHAHLSDKKIAYLLDQAQQKGL-ILVTTAK 284 (338)
Q Consensus 249 ~~~~~fpDHh~ys~~dl~~i~~~a~~~~~-~iiTTEK 284 (338)
T Consensus 285 ~~-----LHG~lsQ~eR~~~L~~Fk~G~~~VLVaTDV 316 (574)
T PRK04537 285 GV-----LSGDVPQKKRESLLNRFQKGQLEILVATDV 316 (574)
T ss_pred EE-----EECCCCHHHHHHHHHHHHCCCCCEEEECCC
T ss_conf 99-----709999999999999997699979977350