HHsearch alignment for GI: 254780401 and conserved domain: PRK04537

>PRK04537 ATP-dependent RNA helicase RhlB; Provisional.
Probab=94.04  E-value=0.32  Score=29.29  Aligned_cols=215  Identities=20%  Similarity=0.248  Sum_probs=103.9

Q ss_pred             CCCCCCHHHHHHHHHHHHCCCCEEEEEECCCCCCCCCEEEECCCCCHHHHCCHHHHHHHCCC----CCCCCCHHHHHHHH
Q ss_conf             78887489999999985247315987604578777755871456788770421233220576----34652012256641
Q gi|254780401|r   55 GGTGKTPTALAIAKAVIDKNLKPGFLSRGYGRKSRISFRVDLEKHSAYDVGDEPLLLARRAV----TIVTSDRKIGVQML  130 (338)
Q Consensus        55 GGtGKTP~v~~l~~~l~~~g~~~~ilsRGYg~~~~~~~~v~~~~~~~~~vGDEp~lla~~~p----v~V~~~R~~~~~~~  130 (338)
T Consensus        55 TGSGKTL--AYlLPiL~~Ll~~~~l~~~~--~~~p~aLILvPTRELA~QI~~~~~~l~~~~~lr~~~l~GG~~~~~q~~~  130 (574)
T PRK04537         55 TGTGKTL--AFLVAVMNRLLSRPALADRK--PEDPRALILAPTRELAIQIHKDAVKFGADLGLRFALVYGGVDYDKQREL  130 (574)
T ss_pred             CCCHHHH--HHHHHHHHHHHHCCCCCCCC--CCCCEEEEECCCHHHHHHHHHHHHHHHCCCCCEEEEEECCCCHHHHHHH
T ss_conf             9888999--99999999998374434577--8996199977989999999999999864589779999799668899998


Q ss_pred             CCCCCCEEEECCC-----C-CCCCC-CCEEEEEEECCCCCCCCCCCCCCHHHHHCCHHHHHHH------HHHHHCCC-CH
Q ss_conf             0245747997183-----2-23441-2306999961843356655376136521002556651------45442044-12
Q gi|254780401|r  131 LQEGVDIIIMDDG-----F-HSADL-QADFSLIVVNSHRGLGNGLVFPAGPLRVPLSRQLSYV------DAILYVGN-KK  196 (338)
Q Consensus       131 ~~~~~diiIlDDG-----f-Qh~~l-~rdl~Ivl~d~~~~~gn~~llPaGpLREp~~~~l~ra------d~vi~~~~-~~  196 (338)
T Consensus       131 L~~g~dIVVaTPGRLld~L~~~~~~~L~~vk~LVLDEAD-----~LLd~gF~~d-i~~IL~~lP~~~~rQ~iLfSATl~~  204 (574)
T PRK04537        131 LQQGVDVIIATPGRLIDYVKQHKVVSLHACEICVLDEAD-----RMFDLGFIKD-IRFLLRRMPERGTRQTLLFSATLSH  204 (574)
T ss_pred             HCCCCCEEEECHHHHHHHHHHCCCCCCCCEEEEEECCCH-----HHHCCCCHHH-HHHHHHHCCCCCCCEEEEEEECCCH
T ss_conf             735999899898999999981798653331589962732-----6542877999-9999996665568558999832777


Q ss_pred             HH---HHHHCCC------------------CHHHHHH--HHC----CCCCCCCCEEEEEE-CCCCHHHHHHHHHHHCCCC
Q ss_conf             45---7763135------------------0111222--201----32111686389874-1553578999887401000
Q gi|254780401|r  197 NV---ISSIKNK------------------SVYFAKL--KPR----LTFDLSGKKVLAFS-GIADTEKFFTTVRQLGALI  248 (338)
Q Consensus       197 ~~---~~~~~~~------------------~i~~~~~--~~~----~~~~l~~k~v~afs-GIa~P~~F~~~L~~~g~~i  248 (338)
T Consensus       205 ~V~~la~~~l~~P~~i~v~~~~~~~~~I~Q~~~~~~~~~K~~~L~~LL~~~~~~k~IIF~nT~~~ve~l~~~L~~~g~~v  284 (574)
T PRK04537        205 RVLELAYEHMNEPEKLVVETETITAARVRQRIYFPSDEEKQTLLLGLLSRSEGARTMVFVNTKAFVERVARTLERHGYRV  284 (574)
T ss_pred             HHHHHHHHHCCCCEEEEECCCCCCCCCEEEEEEECCHHHHHHHHHHHHHHCCCCCCEEECCHHHHHHHHHHHHHHCCCCE
T ss_conf             99999999779986999656654577603899977778999999999972677651153341899999999999779968


Q ss_pred             CCCCCCCCCCCCCHHHHHHHHHHHHHCCC-EEEECHH
Q ss_conf             01221433234898999999997564798-7998546
Q gi|254780401|r  249 EQCYSFGDHAHLSDKKIAYLLDQAQQKGL-ILVTTAK  284 (338)
Q Consensus       249 ~~~~~fpDHh~ys~~dl~~i~~~a~~~~~-~iiTTEK  284 (338)
T Consensus       285 ~~-----LHG~lsQ~eR~~~L~~Fk~G~~~VLVaTDV  316 (574)
T PRK04537        285 GV-----LSGDVPQKKRESLLNRFQKGQLEILVATDV  316 (574)
T ss_pred             EE-----EECCCCHHHHHHHHHHHHCCCCCEEEECCC
T ss_conf             99-----709999999999999997699979977350