HHsearch alignment for GI: 254780401 and conserved domain: PRK10590

>PRK10590 ATP-dependent RNA helicase RhlE; Provisional.
Probab=94.96  E-value=0.37  Score=28.88  Aligned_cols=183  Identities=14%  Similarity=0.185  Sum_probs=92.4

Q ss_pred             CEEEECCCCCHHHHCCHHHHHHHCCC----CCCCCCHHHHHHHHCCCCCCEEEECCC-----C-CCCCCCCEEEEEEECC
Q ss_conf             55871456788770421233220576----346520122566410245747997183-----2-2344123069999618
Q gi|254780401|r   91 SFRVDLEKHSAYDVGDEPLLLARRAV----TIVTSDRKIGVQMLLQEGVDIIIMDDG-----F-HSADLQADFSLIVVNS  160 (338)
Q Consensus        91 ~~~v~~~~~~~~~vGDEp~lla~~~p----v~V~~~R~~~~~~~~~~~~diiIlDDG-----f-Qh~~l~rdl~Ivl~d~  160 (338)
T Consensus        78 aLIL~PTRELA~Qi~~~~~~l~~~~~~~~~~~~Gg~~~~~q~~~l~~~~dIlVaTPGRLldl~~~~~~~l~~v~~lVlDE  157 (457)
T PRK10590         78 ALILTPTRELAAQIGENVRDYSKYLNIRSLVVFGGVSINPQMMKLRGGVDVLVATPGRLLDLEHQNAVKLDQVEILVLDE  157 (457)
T ss_pred             EEEECCHHHHHHHHHHHHHHHCCCCCCEEEEEECCCCHHHHHHHHCCCCCEEEECCHHHHHHHHCCCCCCCCCEEEEEEC
T ss_conf             99976879999999999997425589459999799777599998618999899892888988862677657523999837


Q ss_pred             CCCCCCCCCCCCHHHHHCCHHHHH----HHHHHHHCCC-CHH---HHHHHCCCCHH------------------HHHH--
Q ss_conf             433566553761365210025566----5145442044-124---57763135011------------------1222--
Q gi|254780401|r  161 HRGLGNGLVFPAGPLRVPLSRQLS----YVDAILYVGN-KKN---VISSIKNKSVY------------------FAKL--  212 (338)
Q Consensus       161 ~~~~gn~~llPaGpLREp~~~~l~----rad~vi~~~~-~~~---~~~~~~~~~i~------------------~~~~--  212 (338)
T Consensus       158 A-----D~mLd~gF~~d-i~~Il~~lp~~rQ~llfSAT~~~~v~~l~~~~l~~p~~i~v~~~~~~~~~i~q~~~~v~~~~  231 (457)
T PRK10590        158 A-----DRMLDMGFIHD-IRRVLAKLPAKRQNLLFSATFSDDIKALAEKLLHNPLEIEVARRNTASEQVTQHVHFVDKKR  231 (457)
T ss_pred             C-----HHHHCCCCHHH-HHHHHHHCCCCCEEEEEECCCCHHHHHHHHHHCCCCEEEEECCCCCCCCCEEEEEEEECHHH
T ss_conf             0-----56515665366-89998638765268999504888999999997689889996367665613048999956678


Q ss_pred             HHC----CCCCCCCCEEEEEE-CCCCHHHHHHHHHHHCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCC-EEEECHH
Q ss_conf             201----32111686389874-155357899988740100001221433234898999999997564798-7998546
Q gi|254780401|r  213 KPR----LTFDLSGKKVLAFS-GIADTEKFFTTVRQLGALIEQCYSFGDHAHLSDKKIAYLLDQAQQKGL-ILVTTAK  284 (338)
Q Consensus       213 ~~~----~~~~l~~k~v~afs-GIa~P~~F~~~L~~~g~~i~~~~~fpDHh~ys~~dl~~i~~~a~~~~~-~iiTTEK  284 (338)
T Consensus       232 k~~~L~~ll~~~~~~~~iIF~~tk~~a~~l~~~L~~~g~~~~~-----lHg~~sq~~R~~~l~~F~~g~~~vLVaTDv  304 (457)
T PRK10590        232 KRELLSQMIGKGNWQQVLVFTRTKHGANHLAEQLNKDGIRSAA-----IHGNKSQGARTRALADFKSGDIRVLVATDI  304 (457)
T ss_pred             HHHHHHHHHHHCCCCCEEEEECHHHHHHHHHHHHHHCCCCCEE-----EECCCCHHHHHHHHHHHHCCCCCEEEECCC
T ss_conf             9999999986158663358841199999999998556998232-----324789999999999998699829995770