HHsearch alignment for GI: 254780401 and conserved domain: PRK10590
>PRK10590 ATP-dependent RNA helicase RhlE; Provisional.
Probab=94.96 E-value=0.37 Score=28.88 Aligned_cols=183 Identities=14% Similarity=0.185 Sum_probs=92.4
Q ss_pred CEEEECCCCCHHHHCCHHHHHHHCCC----CCCCCCHHHHHHHHCCCCCCEEEECCC-----C-CCCCCCCEEEEEEECC
Q ss_conf 55871456788770421233220576----346520122566410245747997183-----2-2344123069999618
Q gi|254780401|r 91 SFRVDLEKHSAYDVGDEPLLLARRAV----TIVTSDRKIGVQMLLQEGVDIIIMDDG-----F-HSADLQADFSLIVVNS 160 (338)
Q Consensus 91 ~~~v~~~~~~~~~vGDEp~lla~~~p----v~V~~~R~~~~~~~~~~~~diiIlDDG-----f-Qh~~l~rdl~Ivl~d~ 160 (338)
T Consensus 78 aLIL~PTRELA~Qi~~~~~~l~~~~~~~~~~~~Gg~~~~~q~~~l~~~~dIlVaTPGRLldl~~~~~~~l~~v~~lVlDE 157 (457)
T PRK10590 78 ALILTPTRELAAQIGENVRDYSKYLNIRSLVVFGGVSINPQMMKLRGGVDVLVATPGRLLDLEHQNAVKLDQVEILVLDE 157 (457)
T ss_pred EEEECCHHHHHHHHHHHHHHHCCCCCCEEEEEECCCCHHHHHHHHCCCCCEEEECCHHHHHHHHCCCCCCCCCEEEEEEC
T ss_conf 99976879999999999997425589459999799777599998618999899892888988862677657523999837
Q ss_pred CCCCCCCCCCCCHHHHHCCHHHHH----HHHHHHHCCC-CHH---HHHHHCCCCHH------------------HHHH--
Q ss_conf 433566553761365210025566----5145442044-124---57763135011------------------1222--
Q gi|254780401|r 161 HRGLGNGLVFPAGPLRVPLSRQLS----YVDAILYVGN-KKN---VISSIKNKSVY------------------FAKL-- 212 (338)
Q Consensus 161 ~~~~gn~~llPaGpLREp~~~~l~----rad~vi~~~~-~~~---~~~~~~~~~i~------------------~~~~-- 212 (338)
T Consensus 158 A-----D~mLd~gF~~d-i~~Il~~lp~~rQ~llfSAT~~~~v~~l~~~~l~~p~~i~v~~~~~~~~~i~q~~~~v~~~~ 231 (457)
T PRK10590 158 A-----DRMLDMGFIHD-IRRVLAKLPAKRQNLLFSATFSDDIKALAEKLLHNPLEIEVARRNTASEQVTQHVHFVDKKR 231 (457)
T ss_pred C-----HHHHCCCCHHH-HHHHHHHCCCCCEEEEEECCCCHHHHHHHHHHCCCCEEEEECCCCCCCCCEEEEEEEECHHH
T ss_conf 0-----56515665366-89998638765268999504888999999997689889996367665613048999956678
Q ss_pred HHC----CCCCCCCCEEEEEE-CCCCHHHHHHHHHHHCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCC-EEEECHH
Q ss_conf 201----32111686389874-155357899988740100001221433234898999999997564798-7998546
Q gi|254780401|r 213 KPR----LTFDLSGKKVLAFS-GIADTEKFFTTVRQLGALIEQCYSFGDHAHLSDKKIAYLLDQAQQKGL-ILVTTAK 284 (338)
Q Consensus 213 ~~~----~~~~l~~k~v~afs-GIa~P~~F~~~L~~~g~~i~~~~~fpDHh~ys~~dl~~i~~~a~~~~~-~iiTTEK 284 (338)
T Consensus 232 k~~~L~~ll~~~~~~~~iIF~~tk~~a~~l~~~L~~~g~~~~~-----lHg~~sq~~R~~~l~~F~~g~~~vLVaTDv 304 (457)
T PRK10590 232 KRELLSQMIGKGNWQQVLVFTRTKHGANHLAEQLNKDGIRSAA-----IHGNKSQGARTRALADFKSGDIRVLVATDI 304 (457)
T ss_pred HHHHHHHHHHHCCCCCEEEEECHHHHHHHHHHHHHHCCCCCEE-----EECCCCHHHHHHHHHHHHCCCCCEEEECCC
T ss_conf 9999999986158663358841199999999998556998232-----324789999999999998699829995770