HHsearch alignment for GI: 254780401 and conserved domain: PRK10867
>PRK10867 signal recognition particle protein; Provisional.
Probab=96.15 E-value=0.016 Score=38.59 Aligned_cols=204 Identities=16% Similarity=0.177 Sum_probs=106.7
Q ss_pred EEEECCEEECCCCCCHHHHHHHHHHHHC-CCCEEEEEE-CCCCCCCCCEEEECCCCCHHHHCCHHHHHHHC--CCCCC--
Q ss_conf 8998230007888748999999998524-731598760-45787777558714567887704212332205--76346--
Q gi|254780401|r 46 VICVGGFVMGGTGKTPTALAIAKAVIDK-NLKPGFLSR-GYGRKSRISFRVDLEKHSAYDVGDEPLLLARR--AVTIV-- 119 (338)
Q Consensus 46 VI~VGNitvGGtGKTP~v~~l~~~l~~~-g~~~~ilsR-GYg~~~~~~~~v~~~~~~~~~vGDEp~lla~~--~pv~V-- 119 (338)
T Consensus 103 Im~vG---LqGsGKTTT~aKLA~~lk~k~~k~vllvaaDt~R-------------paA~---eQL~~la~~~~v~~~~~~ 163 (453)
T PRK10867 103 VLMAG---LQGAGKTTSVGKLGKFLREKHKKKVLVVSADVYR-------------PAAI---KQLETLAEQVGVDFFPSD 163 (453)
T ss_pred EEEEC---CCCCCHHHHHHHHHHHHHHCCCCEEEEECCCCCH-------------HHHH---HHHHHHHHHCCCCEECCC
T ss_conf 99974---6888518589999999997389837985588770-------------5899---999999985198043678
Q ss_pred -CCCHHH----HHHHHCCCCCCEEEECCCCC--------------CCCCCCEEEEEEECCCCCCCCCCCCCCHHHHHCCH
Q ss_conf -520122----56641024574799718322--------------34412306999961843356655376136521002
Q gi|254780401|r 120 -TSDRKI----GVQMLLQEGVDIIIMDDGFH--------------SADLQADFSLIVVNSHRGLGNGLVFPAGPLRVPLS 180 (338)
Q Consensus 120 -~~~R~~----~~~~~~~~~~diiIlDDGfQ--------------h~~l~rdl~Ivl~d~~~~~gn~~llPaGpLREp~~ 180 (338)
T Consensus 164 ~~~dp~~ia~~a~~~ak~~~~DvvivDTAGRl~~d~~Lm~El~~i~~~~~P~e~llV~Da~~G--Q~a~~~a----~~F~ 237 (453)
T PRK10867 164 VGQKPVDIVNAALKEAKLKFYDVLLVDTAGRLHVDEAMMDEIKQVHASINPVETLFVVDAMTG--QDAANTA----KAFN 237 (453)
T ss_pred CCCCHHHHHHHHHHHHHHCCCCEEEEECCCCHHCCHHHHHHHHHHHHHHCCCCEEEEEECCCC--HHHHHHH----HHHH
T ss_conf 899889999999999997799999997876012108889999999876378713797432235--6689999----9999
Q ss_pred HHHHHHHHHHHCCCCHHH-------HHHHCCCCHHHHHH-H-HCCCCCCCCCEEE-EEECCCCHHHHHHHHHHHCCCCCC
Q ss_conf 556651454420441245-------77631350111222-2-0132111686389-874155357899988740100001
Q gi|254780401|r 181 RQLSYVDAILYVGNKKNV-------ISSIKNKSVYFAKL-K-PRLTFDLSGKKVL-AFSGIADTEKFFTTVRQLGALIEQ 250 (338)
Q Consensus 181 ~~l~rad~vi~~~~~~~~-------~~~~~~~~i~~~~~-~-~~~~~~l~~k~v~-afsGIa~P~~F~~~L~~~g~~i~~ 250 (338)
T Consensus 238 ~~~-~~~gvIlTKlDgdarGG~alS~~~~t~~PI~FiG~GEk~ddle~F~p~r~asRILGmGDi~~Lvek~~~~-~d~~~ 315 (453)
T PRK10867 238 EAL-PLTGVVLTKVDGDARGGAALSIRHITGKPIKFLGVGEKTDALEPFHPDRIASRILGMGDVLSLIEDIESK-VDRAQ 315 (453)
T ss_pred HHC-CCCEEEEECCCCCCCCHHHHHHHHHHCCCCEEEECCCCCCCCCCCCHHHHHHHHCCCCCHHHHHHHHHHH-HHHHH
T ss_conf 855-9870787504678761389899999786967886699824588768489999861898789999999987-50889
Q ss_pred ----CCCCCCCCCCCHHHHHHHHHHHHHCC
Q ss_conf ----22143323489899999999756479
Q gi|254780401|r 251 ----CYSFGDHAHLSDKKIAYLLDQAQQKG 276 (338)
Q Consensus 251 ----~~~fpDHh~ys~~dl~~i~~~a~~~~ 276 (338)
T Consensus 316 ~~~~~~k~~~g~~F~l~D~~~Q~~~i~kmG 345 (453)
T PRK10867 316 AEKLASKLKKGDGFDLNDFLEQLKQMKNMG 345 (453)
T ss_pred HHHHHHHHHCCCCCCHHHHHHHHHHHHCCC
T ss_conf 999999987069856999999999997457