HHsearch alignment for GI: 254780401 and conserved domain: PRK11537
>PRK11537 putative GTP-binding protein YjiA; Provisional.
Probab=91.30 E-value=0.26 Score=29.92 Aligned_cols=137 Identities=20% Similarity=0.267 Sum_probs=71.9
Q ss_pred CCCCEEEECCEEECCCCCCHHHHHHHHHHHHCCCCEEEEEECCCCCCCCCEEEECCCCCHHHHCCHHHHHHHCCCCCCCC
Q ss_conf 88988998230007888748999999998524731598760457877775587145678877042123322057634652
Q gi|254780401|r 42 APIPVICVGGFVMGGTGKTPTALAIAKAVIDKNLKPGFLSRGYGRKSRISFRVDLEKHSAYDVGDEPLLLARRAVTIVTS 121 (338)
Q Consensus 42 ~~~pVI~VGNitvGGtGKTP~v~~l~~~l~~~g~~~~ilsRGYg~~~~~~~~v~~~~~~~~~vGDEp~lla~~~pv~V~~ 121 (338)
T Consensus 2 ~~IPVtiltGF--LGaGKTTlL~~lL~~--~~~~riaVivNEfGev-----~iD--~~li~~~~~~v~eL~nGCiCCs~~ 70 (317)
T PRK11537 2 NPIAVTLLTGF--LGAGKTTLLRHILNE--QHGYKIAVIENEFGEV-----SVD--DQLIGDRATQIKTLTNGCICCSRS 70 (317)
T ss_pred CCCCEEEEEEC--CCCCHHHHHHHHHHC--CCCCCEEEEEECCCCC-----CCH--HHHHHCCCCCEEEECCCCEEEEEC
T ss_conf 97688998308--888999999999727--7899789998376145-----332--988735653268844773687305
Q ss_pred CH-HHHHHHHCCC------CCCEEEE-----------------CCCCCCCCCCCEEEEEEECCCCCCCCCCCCCCHHHHH
Q ss_conf 01-2256641024------5747997-----------------1832234412306999961843356655376136521
Q gi|254780401|r 122 DR-KIGVQMLLQE------GVDIIIM-----------------DDGFHSADLQADFSLIVVNSHRGLGNGLVFPAGPLRV 177 (338)
Q Consensus 122 ~R-~~~~~~~~~~------~~diiIl-----------------DDGfQh~~l~rdl~Ivl~d~~~~~gn~~llPaGpLRE 177 (338)
T Consensus 71 ~dl~~~l~~l~~~~~~~~~~~D~IiIEtsGlAdP~~I~~~~~~~~~l~-~~~~Ld~vVtvVDa~~~~~~l~~~~-----~ 144 (317)
T PRK11537 71 NELEDALLDLLDNLDRGNIQFDRLVIECTGMADPGPIIQTFFSHEVLC-QRYLLDGVIALVDAVHADEQMNQFT-----I 144 (317)
T ss_pred CHHHHHHHHHHHHHHCCCCCCCEEEEECCCCCCHHHHHHHHHHHHHHH-HHEECCCEEEEEEHHHHHHHHHCCH-----H
T ss_conf 228999999998664357775479996257788399999986125656-5320365599986655576653034-----6
Q ss_pred CCHHHHHHHHHHHHCCCCH
Q ss_conf 0025566514544204412
Q gi|254780401|r 178 PLSRQLSYVDAILYVGNKK 196 (338)
Q Consensus 178 p~~~~l~rad~vi~~~~~~ 196 (338)
T Consensus 145 ~-~~Qi~~AD~illnK~Dl 162 (317)
T PRK11537 145 A-QSQVGYADRILLTKTDV 162 (317)
T ss_pred H-HHHHHHCCEEEEECCCC
T ss_conf 6-76663186899742002