HHsearch alignment for GI: 254780401 and conserved domain: PRK13869
>PRK13869 plasmid-partitioning protein RepA; Provisional.
Probab=96.55 E-value=0.0028 Score=43.89 Aligned_cols=38 Identities=29% Similarity=0.407 Sum_probs=34.8
Q ss_pred CCCEEEECCEEECCCCCCHHHHHHHHHHHHCCCCEEEEE
Q ss_conf 898899823000788874899999999852473159876
Q gi|254780401|r 43 PIPVICVGGFVMGGTGKTPTALAIAKAVIDKNLKPGFLS 81 (338)
Q Consensus 43 ~~pVI~VGNitvGGtGKTP~v~~l~~~l~~~g~~~~ils 81 (338)
T Consensus 120 ~~kVIaVaN~-KGGVGKTTtav~LA~~LA~~G~RVLlID 157 (405)
T PRK13869 120 HLQVIAVTNF-KGGSGKTTTSAHLAQYLALQGYRVLAVD 157 (405)
T ss_pred CCEEEEEECC-CCCCHHHHHHHHHHHHHHHCCCCEEEEE
T ss_conf 9828999788-8776599999999999997799889996