HHsearch alignment for GI: 254780401 and conserved domain: PRK13976
>PRK13976 thymidylate kinase; Provisional.
Probab=93.20 E-value=0.14 Score=31.97 Aligned_cols=77 Identities=21% Similarity=0.201 Sum_probs=46.9
Q ss_pred ECCCCCCHHHHHHHHHHHH-CCCCEEEEEECCCCCCCCCE----EEECCCCCHHHHCCHHHHHHHCCCCCCCCCHHHHHH
Q ss_conf 0788874899999999852-47315987604578777755----871456788770421233220576346520122566
Q gi|254780401|r 54 MGGTGKTPTALAIAKAVID-KNLKPGFLSRGYGRKSRISF----RVDLEKHSAYDVGDEPLLLARRAVTIVTSDRKIGVQ 128 (338)
Q Consensus 54 vGGtGKTP~v~~l~~~l~~-~g~~~~ilsRGYg~~~~~~~----~v~~~~~~~~~vGDEp~lla~~~pv~V~~~R~~~~~ 128 (338)
T Consensus 8 iDGsGKsTq~~~L~~~L~~~~~~~~~~~trEPggt~~ge~IR~~ll~~~~~~~~---te~lLf~--------A~R~eh~~ 76 (202)
T PRK13976 8 IDGSGKTTQSRLLAEYLSQIYGENNVVLTREPGGTSFNESVRGLLLSTKNLDKL---SELLLFI--------AMRREHFV 76 (202)
T ss_pred CCCCCHHHHHHHHHHHHHHHCCCCCEEEECCCCCCCHHHHHHHHHHCCCCCCHH---HHHHHHH--------HHHHHHHH
T ss_conf 999989999999999998606998689837999982789999997165579969---9999999--------99999999
Q ss_pred HHCCC---CCCEEEEC
Q ss_conf 41024---57479971
Q gi|254780401|r 129 MLLQE---GVDIIIMD 141 (338)
Q Consensus 129 ~~~~~---~~diiIlD 141 (338)
T Consensus 77 ~~I~PaL~~g~~VI~D 92 (202)
T PRK13976 77 KVILPALTQGKIVICD 92 (202)
T ss_pred HHHHHHHHCCCEEEEC
T ss_conf 9988888669989974