HHsearch alignment for GI: 254780401 and conserved domain: TIGR01420
>TIGR01420 pilT_fam twitching motility protein; InterPro: IPR006321 These represent the PilT subfamily of proteins related to GspE, a protein involved in type II secretion (also called the General Secretion Pathway). PilT is an apparent cytosolic ATPase associated with type IV pilus systems. It is not required for pilin biogenesis, but is required for twitching motility and social gliding behaviors, shown in some species, powered by pilus retraction . Members of this family may be found in some species that do not have type IV pili but have related structures for DNA uptake and natural transformation. ; GO: 0005524 ATP binding, 0006810 transport.
Probab=94.39 E-value=0.065 Score=34.24 Aligned_cols=97 Identities=15% Similarity=0.207 Sum_probs=60.6
Q ss_pred CCCCCHHHHHHHHHHHHCCCCEEEEEECCCCCCCCCEEEECCCCCHHHHCCHHHHHHHCCCCCCCCCHHHHHHHHCCCCC
Q ss_conf 88874899999999852473159876045787777558714567887704212332205763465201225664102457
Q gi|254780401|r 56 GTGKTPTALAIAKAVIDKNLKPGFLSRGYGRKSRISFRVDLEKHSAYDVGDEPLLLARRAVTIVTSDRKIGVQMLLQEGV 135 (338)
Q Consensus 56 GtGKTP~v~~l~~~l~~~g~~~~ilsRGYg~~~~~~~~v~~~~~~~~~vGDEp~lla~~~pv~V~~~R~~~~~~~~~~~~ 135 (338)
T Consensus 137 GSGKSTTlAsmIDyIN~-~~~~HIiT------IEDPIEyvh~--------~~~sli~QREvG~DT~sF~~ALraALReDP 201 (350)
T TIGR01420 137 GSGKSTTLASMIDYINK-NKAGHIIT------IEDPIEYVHK--------NKRSLINQREVGLDTLSFANALRAALREDP 201 (350)
T ss_pred CCCHHHHHHHHHHHHHC-CCCCCCEE------EECCEEEEEC--------CCEEEEECCCCCCCHHHHHHHHHHHHCCCC
T ss_conf 98678999999978740-38888256------3177314104--------770245436246754579999768410289
Q ss_pred CEEEECCCCCCCCCCCEEEEEEECCCCCCCCCCCCCCHHHHHCCHHHHHHH---HHHHHCCCCHH
Q ss_conf 479971832234412306999961843356655376136521002556651---45442044124
Q gi|254780401|r 136 DIIIMDDGFHSADLQADFSLIVVNSHRGLGNGLVFPAGPLRVPLSRQLSYV---DAILYVGNKKN 197 (338)
Q Consensus 136 diiIlDDGfQh~~l~rdl~Ivl~d~~~~~gn~~llPaGpLREp~~~~l~ra---d~vi~~~~~~~ 197 (338)
T Consensus 202 DvILiGE-~------RD-----------------------~ET~~~AL~AAETGHLV~gTLHTns 236 (350)
T TIGR01420 202 DVILIGE-M------RD-----------------------LETVELALTAAETGHLVFGTLHTNS 236 (350)
T ss_pred CEEEEEC-C------CC-----------------------HHHHHHHHHHHHHCCHHHHHHHHHH
T ss_conf 8899825-5------62-----------------------7899999987421315676666423