HHsearch alignment for GI: 254780401 and conserved domain: TIGR03499
>TIGR03499 FlhF flagellar biosynthetic protein FlhF.
Probab=93.18 E-value=0.16 Score=31.38 Aligned_cols=41 Identities=27% Similarity=0.468 Sum_probs=20.0
Q ss_pred EEECHHHHHHCCCCCCCCHHHHCCEEEEEEEEEECCHHHHHHHHHH
Q ss_conf 9985466343823334411122051788769895787899999999
Q gi|254780401|r 279 LVTTAKDAMRLHKRPGRAEEIFAKSMVIEVDIVFENPDDLTNLVEM 324 (338)
Q Consensus 279 iiTTEKD~VKL~~~~~~~~~l~~~~~~l~i~~~~~~~~~l~~~l~~ 324 (338)
T Consensus 229 lIT~--DtyRigA~e--QLk~ya~il~vp~~vv-~~~~~l~~~l~~ 269 (282)
T TIGR03499 229 LITT--DTYRIGAVE--QLKTYAKILGVPVKVA-RDPKELAKALER 269 (282)
T ss_pred EEEE--CCCCHHHHH--HHHHHHHHHCCEEEEE-CCHHHHHHHHHH
T ss_conf 9980--777678999--9999999959748993-999999999986