HHsearch alignment for GI: 254780401 and conserved domain: cd02034
>cd02034 CooC The accessory protein CooC, which contains a nucleotide-binding domain (P-loop) near the N-terminus, participates in the maturation of the nickel center of carbon monoxide dehydrogenase (CODH). CODH from Rhodospirillum rubrum catalyzes the reversible oxidation of CO to CO2. CODH contains a nickel-iron-sulfur cluster (C-center) and an iron-sulfur cluster (B-center). CO oxidation occurs at the C-center. Three accessory proteins encoded by cooCTJ genes are involved in nickel incorporation into a nickel site. CooC functions as a nickel insertase that mobilizes nickel to apoCODH using energy released from ATP hydrolysis. CooC is a homodimer and has NTPase activities. Mutation at the P-loop abolishs its function.
Probab=92.78 E-value=0.095 Score=33.06 Aligned_cols=28 Identities=29% Similarity=0.343 Sum_probs=25.3
Q ss_pred ECCCCCCHHHHHHHHHHHHCCCCEEEEE
Q ss_conf 0788874899999999852473159876
Q gi|254780401|r 54 MGGTGKTPTALAIAKAVIDKNLKPGFLS 81 (338)
Q Consensus 54 vGGtGKTP~v~~l~~~l~~~g~~~~ils 81 (338)
T Consensus 7 KGGvGKtt~~~~la~~l~~~g~~vl~iD 34 (116)
T cd02034 7 KGGVGKTTIAALLARYLAEKGKPVLAID 34 (116)
T ss_pred CCCCCHHHHHHHHHHHHHHCCCEEEEEE
T ss_conf 9977499999999999997899699998