HHsearch alignment for GI: 254780401 and conserved domain: cd03114
>cd03114 ArgK-like The function of this protein family is unkown. The protein sequences are similar to the ArgK protein in E. coli. ArgK protein is a membrane ATPase which is required for transporting arginine, ornithine and lysine into the cells by the arginine and ornithine (AO system) and lysine, arginine and ornithine (LAO) transport systems.
Probab=93.03 E-value=0.27 Score=29.82 Aligned_cols=122 Identities=17% Similarity=0.265 Sum_probs=70.4
Q ss_pred EECCCCCCHHHHHHHHHHHHCCCCEEEEEECCCCCCCCCEEEECCCC--CHHHHCCHHHHHHH-CCC-CC----------
Q ss_conf 00788874899999999852473159876045787777558714567--88770421233220-576-34----------
Q gi|254780401|r 53 VMGGTGKTPTALAIAKAVIDKNLKPGFLSRGYGRKSRISFRVDLEKH--SAYDVGDEPLLLAR-RAV-TI---------- 118 (338)
Q Consensus 53 tvGGtGKTP~v~~l~~~l~~~g~~~~ilsRGYg~~~~~~~~v~~~~~--~~~~vGDEp~lla~-~~p-v~---------- 118 (338)
T Consensus 6 G~pGaGKStLi~~l~~~~~~~g~~VaVla------------vDPsS~~sgGalLGDRiRm~~~~~~~~vfiRs~atrg~~ 73 (148)
T cd03114 6 GVPGAGKSTLIDALITALRARGKRVAVLA------------IDPSSPFSGGAILGDRIRMERHASDPGVFIRSLATRGFL 73 (148)
T ss_pred CCCCCCHHHHHHHHHHHHHHCCCEEEEEE------------ECCCCCCCCCCCHHHHHHHHHHCCCCCEEEEECCCCCCC
T ss_conf 89978789999999999997898379999------------688878668620323545344157998368634666654
Q ss_pred --CCCCHHHHHHHHCCCCCCEEEEC---CCCCCCCCCC--EEEEEEECCCCCCCCCCCCCCHHHHHCCHHHHHHHHHHHH
Q ss_conf --65201225664102457479971---8322344123--0699996184335665537613652100255665145442
Q gi|254780401|r 119 --VTSDRKIGVQMLLQEGVDIIIMD---DGFHSADLQA--DFSLIVVNSHRGLGNGLVFPAGPLRVPLSRQLSYVDAILY 191 (338)
Q Consensus 119 --V~~~R~~~~~~~~~~~~diiIlD---DGfQh~~l~r--dl~Ivl~d~~~~~gn~~llPaGpLREp~~~~l~rad~vi~ 191 (338)
T Consensus 74 ggla~~~~~~i~~l~~~g~D~IiIETvGvGQse~~i~~~aD~~i~v~~p~--~GD--~iQ~----~K-~gi~e~aDl~vv 144 (148)
T cd03114 74 GGLSRATPEVIRVLDAAGFDVIIVETVGVGQSEVDIASMADTTVVVMAPG--AGD--DIQA----IK-AGIMEIADIVVV 144 (148)
T ss_pred CCHHHHHHHHHHHHHHCCCCEEEEECCCCCCCHHHHHHHCCEEEEEECCC--CCC--HHHH----CC-CCHHHCCCEEEE
T ss_conf 20468899999999975999899974877756026554356699996368--873--7761----12-285212469999
Q ss_pred CCCC
Q ss_conf 0441
Q gi|254780401|r 192 VGNK 195 (338)
Q Consensus 192 ~~~~ 195 (338)
T Consensus 145 NK~D 148 (148)
T cd03114 145 NKAD 148 (148)
T ss_pred ECCC
T ss_conf 3789