HHsearch alignment for GI: 254780401 and conserved domain: pfam00448
>pfam00448 SRP54 SRP54-type protein, GTPase domain. This family includes relatives of the G-domain of the SRP54 family of proteins.
Probab=96.12 E-value=0.012 Score=39.55 Aligned_cols=73 Identities=21% Similarity=0.197 Sum_probs=43.5
Q ss_pred CCCCCCHHHHHHHHHHHHCCCCEEEEEECCCCCCCCCEEEECCCCCHHHHCCHHHH-HHH--CCCCCCCCCH-------H
Q ss_conf 78887489999999985247315987604578777755871456788770421233-220--5763465201-------2
Q gi|254780401|r 55 GGTGKTPTALAIAKAVIDKNLKPGFLSRGYGRKSRISFRVDLEKHSAYDVGDEPLL-LAR--RAVTIVTSDR-------K 124 (338)
Q Consensus 55 GGtGKTP~v~~l~~~l~~~g~~~~ilsRGYg~~~~~~~~v~~~~~~~~~vGDEp~l-la~--~~pv~V~~~R-------~ 124 (338)
T Consensus 10 tGvGKTTTiaKLAa~~~~~~~~V~lit~----------------Dt~R~gA~eQL~~ya~~l~v~~~~~~~~~d~~~~~~ 73 (196)
T pfam00448 10 QGSGKTTTIAKLAAYLKKQGKKVLLVAA----------------DTFRAAAIEQLKQLAERLGVPVFGSGTGSDPAAVAF 73 (196)
T ss_pred CCCCHHHHHHHHHHHHHHCCCEEEEEEC----------------CCCCHHHHHHHHHHHHHCCCEEEECCCCCCHHHHHH
T ss_conf 9998899999999999977992899975----------------877688999999999863981781487778789999
Q ss_pred HHHHHHCCCCCCEEEECCC
Q ss_conf 2566410245747997183
Q gi|254780401|r 125 IGVQMLLQEGVDIIIMDDG 143 (338)
Q Consensus 125 ~~~~~~~~~~~diiIlDDG 143 (338)
T Consensus 74 ~~l~~~~~~~~D~IlIDTa 92 (196)
T pfam00448 74 DAVEKAKAENYDVVLVDTA 92 (196)
T ss_pred HHHHHHHHCCCCEEEEECC
T ss_conf 9999988468999999899