HHsearch alignment for GI: 254780401 and conserved domain: pfam00448

>pfam00448 SRP54 SRP54-type protein, GTPase domain. This family includes relatives of the G-domain of the SRP54 family of proteins.
Probab=96.12  E-value=0.012  Score=39.55  Aligned_cols=73  Identities=21%  Similarity=0.197  Sum_probs=43.5

Q ss_pred             CCCCCCHHHHHHHHHHHHCCCCEEEEEECCCCCCCCCEEEECCCCCHHHHCCHHHH-HHH--CCCCCCCCCH-------H
Q ss_conf             78887489999999985247315987604578777755871456788770421233-220--5763465201-------2
Q gi|254780401|r   55 GGTGKTPTALAIAKAVIDKNLKPGFLSRGYGRKSRISFRVDLEKHSAYDVGDEPLL-LAR--RAVTIVTSDR-------K  124 (338)
Q Consensus        55 GGtGKTP~v~~l~~~l~~~g~~~~ilsRGYg~~~~~~~~v~~~~~~~~~vGDEp~l-la~--~~pv~V~~~R-------~  124 (338)
T Consensus        10 tGvGKTTTiaKLAa~~~~~~~~V~lit~----------------Dt~R~gA~eQL~~ya~~l~v~~~~~~~~~d~~~~~~   73 (196)
T pfam00448        10 QGSGKTTTIAKLAAYLKKQGKKVLLVAA----------------DTFRAAAIEQLKQLAERLGVPVFGSGTGSDPAAVAF   73 (196)
T ss_pred             CCCCHHHHHHHHHHHHHHCCCEEEEEEC----------------CCCCHHHHHHHHHHHHHCCCEEEECCCCCCHHHHHH
T ss_conf             9998899999999999977992899975----------------877688999999999863981781487778789999


Q ss_pred             HHHHHHCCCCCCEEEECCC
Q ss_conf             2566410245747997183
Q gi|254780401|r  125 IGVQMLLQEGVDIIIMDDG  143 (338)
Q Consensus       125 ~~~~~~~~~~~diiIlDDG  143 (338)
T Consensus        74 ~~l~~~~~~~~D~IlIDTa   92 (196)
T pfam00448        74 DAVEKAKAENYDVVLVDTA   92 (196)
T ss_pred             HHHHHHHHCCCCEEEEECC
T ss_conf             9999988468999999899