HHsearch alignment for GI: 254780401 and conserved domain: pfam02492
>pfam02492 cobW CobW/HypB/UreG, nucleotide-binding domain. This domain is found in HypB, a hydrogenase expression / formation protein, and UreG a urease accessory protein. Both these proteins contain a P-loop nucleotide binding motif. HypB has GTPase activity and is a guanine nucleotide binding protein. It is not known whether UreG binds GTP or some other nucleotide. Both enzymes are involved in nickel binding. HypB can store nickel and is required for nickel dependent hydrogenase expression. UreG is required for functional incorporation of the urease nickel metallocenter. GTP hydrolysis may required by these proteins for nickel incorporation into other nickel proteins. This family of domains also contains P47K, a Pseudomonas chlororaphis protein needed for nitrile hydratase expression, and the cobW gene product, which may be involved in cobalamin biosynthesis in Pseudomonas denitrificans.
Probab=94.20 E-value=0.17 Score=31.34 Aligned_cols=125 Identities=20% Similarity=0.299 Sum_probs=62.8
Q ss_pred CCCCCCHHHHHHHHHHHHCCCCEEEEEECCCCCCCCCEEEECCCCCHHHHCCHHHHHHHCCCCCCCCC---H-HHHHHHH
Q ss_conf 78887489999999985247315987604578777755871456788770421233220576346520---1-2256641
Q gi|254780401|r 55 GGTGKTPTALAIAKAVIDKNLKPGFLSRGYGRKSRISFRVDLEKHSAYDVGDEPLLLARRAVTIVTSD---R-KIGVQML 130 (338)
Q Consensus 55 GGtGKTP~v~~l~~~l~~~g~~~~ilsRGYg~~~~~~~~v~~~~~~~~~vGDEp~lla~~~pv~V~~~---R-~~~~~~~ 130 (338)
T Consensus 9 LGsGKTTll~~ll~~~-~~~~~~avI~Ne~g~~~-----iD~--~ll~~~~~~v~el~~---GciCc~~~~d~~~~l~~l 77 (174)
T pfam02492 9 LGSGKTTLLEHLLRDN-REGLKIAVIVNDFGETG-----IDA--ELLRETGAEIVELNN---GCICCTIREDLSMVLEAL 77 (174)
T ss_pred CCCCHHHHHHHHHHHC-CCCCCEEEEEECCCCHH-----HHH--HHHHHCCCEEEEECC---CCCCCCCCHHHHHHHHHH
T ss_conf 8788999999999844-48984799993365302-----079--998706961899748---866454333699999999
Q ss_pred C---CCCCCEEEE-CCCCCCC--------CCCCEEEEEEECCCCCCCCCCCCCCHHHHHCCHHHHHHHHHHHHCCCCH
Q ss_conf 0---245747997-1832234--------4123069999618433566553761365210025566514544204412
Q gi|254780401|r 131 L---QEGVDIIIM-DDGFHSA--------DLQADFSLIVVNSHRGLGNGLVFPAGPLRVPLSRQLSYVDAILYVGNKK 196 (338)
Q Consensus 131 ~---~~~~diiIl-DDGfQh~--------~l~rdl~Ivl~d~~~~~gn~~llPaGpLREp~~~~l~rad~vi~~~~~~ 196 (338)
T Consensus 78 ~~~~~~~~d~iiIE~sGla~p~~i~~~~~~~~~~~~i~vvDa~~~~-~~~~~~----~~-~~~Qi~~AD~vvlNK~Dl 149 (174)
T pfam02492 78 LELKLPRLDLLFIETTGLACPAPVLDLRSDLGLDGVVTVVDVKNFT-EGEDIP----EK-APDQIAFADLIVINKTDL 149 (174)
T ss_pred HHCCCCCCCEEEEECCCCCCHHHHHHHHHCCCCCEEEEEEECHHHH-HCCCCH----HH-HHHHHHHCCEEEEEHHHC
T ss_conf 8557899999999587667707777653202654599999723433-002007----89-999998769999846653