HHsearch alignment of GI: 254780401 and MMDB domain: 1j8m_F_92-284
>1j8m_F (F:92-284) SRP54, signal recognition 54 kDa protein; signaling protein; 2.00A {Acidianus ambivalens}
Probab=94.57 E-value=0.042 Score=35.15 Aligned_cols=28 Identities=39% Similarity=0.455 Sum_probs=26.9
Q ss_pred ECCCCCCHHHHHHHHHHHHCCCCEEEEE
Q ss_conf 0788874899999999852473159876
Q gi|254780401|r 54 MGGTGKTPTALAIAKAVIDKNLKPGFLS 81 (338)
Q Consensus 54 vGGtGKTP~v~~l~~~l~~~g~~~~ils 81 (338)
.||+|||-++..|+..|.++|+++++++
T Consensus 15 ~~GvGKTT~~~~La~~L~~~G~~v~vi~ 42 (193)
T 1j8m_F 15 VQGTGKTTTAGKLAYFYKKKGFKVGLVG 42 (193)
T ss_dssp SSCSSTTHHHHHHHHHHHHTTCCEEEEE
T ss_pred CCCCCCHHHHHHHHHHHHHCCCCCCEEE
T ss_conf 6555621579999999996697641000