HHsearch alignment of GI: 254780401 and MMDB domain: 1nij_A_1-204

>1nij_A (A:1-204) Hypothetical protein YJIA; structural genomics, P-loop protein, GTP binding, structure 2 function project, S2F, unknown function; 2.00A {Escherichia coli}
Probab=95.31  E-value=0.0053  Score=41.53  Aligned_cols=137  Identities=18%  Similarity=0.175  Sum_probs=71.9

Q ss_pred             CCCEEEECCEEECCCCCCHHHHHHHHHHHHCCCCEEEEEECCCCCCCCCEEEECCCCCHHHHCCHHHHHHHCCCCC-CCC
Q ss_conf             8988998230007888748999999998524731598760457877775587145678877042123322057634-652
Q gi|254780401|r   43 PIPVICVGGFVMGGTGKTPTALAIAKAVIDKNLKPGFLSRGYGRKSRISFRVDLEKHSAYDVGDEPLLLARRAVTI-VTS  121 (338)
Q Consensus        43 ~~pVI~VGNitvGGtGKTP~v~~l~~~l~~~g~~~~ilsRGYg~~~~~~~~v~~~~~~~~~vGDEp~lla~~~pv~-V~~  121 (338)
                      ++||+.|+-.  -|+|||.+...|+++++  |.+++++.-..++..-..-...       +.+.+-..+...+.-. ...
T Consensus         3 k~~v~~v~Gf--lGsGKTTll~~l~~~~~--~~k~~vi~~d~~~~~~d~~l~~-------~~~~~~~~~~~g~~~~~~~~   71 (204)
T 1nij_A            3 PIAVTLLTGF--LGAGKTTLLRHILNEQH--GYKIAVIENEFGEVSVDDQLIG-------DRATQIKTLTNGCICCSRSN   71 (204)
T ss_dssp             CEEEEEEEES--SSSSCHHHHHHHHHSCC--CCCEEEECSSCCSCCEEEEEEC-------TTSCEEEEETTSCEEECTTS
T ss_pred             CCCEEEEEEC--CCCCHHHHHHHHHHCCC--CCCEEEEECCCCCCHHHHHHHH-------CCCCEEEEECCCCEEECCCH
T ss_conf             6578999718--78999999999983778--9968999778875200399983-------78952998628831411525


Q ss_pred             CHHHHHHH------HCCCCCCEEEEC-CCC---------------CCCCCCCEEEEEEECCCCCCCCCCCCCCHHHHHCC
Q ss_conf             01225664------102457479971-832---------------23441230699996184335665537613652100
Q gi|254780401|r  122 DRKIGVQM------LLQEGVDIIIMD-DGF---------------HSADLQADFSLIVVNSHRGLGNGLVFPAGPLRVPL  179 (338)
Q Consensus       122 ~R~~~~~~------~~~~~~diiIlD-DGf---------------Qh~~l~rdl~Ivl~d~~~~~gn~~llPaGpLREp~  179 (338)
                      +-..+.+.      +...++|.|+.| .|.               .+.....+.-++++|+..+-  ..+--.+.+++  
T Consensus        72 ~~~~~l~~~~~~~~a~~~~~d~ilie~~G~~~~~~~~~~~l~~~~~~~~~~~~~vi~vvda~~~~--~~~~~~~~~~~--  147 (204)
T 1nij_A           72 ELEDALLDLLDNLDKGNIQFDRLVIECTGMADPGPIIQTFFSHEVLCQRYLLDGVIALVDAVHAD--EQMNQFTIAQS--  147 (204)
T ss_dssp             CHHHHHHHHHHHHHHTSCCCSEEEEEEETTCCHHHHHHHHHHSHHHHHHEEEEEEEEEEETTTHH--HHHHHCHHHHH--
T ss_pred             HHHHHHHHHHHHHHHCCCCCCEEEEECCCCCCHHHHHHHHHHHHHHCCEEEECCEEEECHHHHHH--HHHHHHHHHHH--
T ss_conf             68999999999986167777669995167668699999986666424638865477831477788--86423255654--


Q ss_pred             HHHHHHHHHHHHCCCCH
Q ss_conf             25566514544204412
Q gi|254780401|r  180 SRQLSYVDAILYVGNKK  196 (338)
Q Consensus       180 ~~~l~rad~vi~~~~~~  196 (338)
                        .+.-||.+|+|+.+.
T Consensus       148 --q~~~ad~viitK~D~  162 (204)
T 1nij_A          148 --QVGYADRILLTKTDV  162 (204)
T ss_dssp             --HHHTCSEEEEECTTT
T ss_pred             --HHCCCCEEEECCCCC
T ss_conf             --303477466301101