HHsearch alignment of GI: 254780401 and MMDB domain: 1nij_A_1-204
>1nij_A (A:1-204) Hypothetical protein YJIA; structural genomics, P-loop protein, GTP binding, structure 2 function project, S2F, unknown function; 2.00A {Escherichia coli}
Probab=95.31 E-value=0.0053 Score=41.53 Aligned_cols=137 Identities=18% Similarity=0.175 Sum_probs=71.9
Q ss_pred CCCEEEECCEEECCCCCCHHHHHHHHHHHHCCCCEEEEEECCCCCCCCCEEEECCCCCHHHHCCHHHHHHHCCCCC-CCC
Q ss_conf 8988998230007888748999999998524731598760457877775587145678877042123322057634-652
Q gi|254780401|r 43 PIPVICVGGFVMGGTGKTPTALAIAKAVIDKNLKPGFLSRGYGRKSRISFRVDLEKHSAYDVGDEPLLLARRAVTI-VTS 121 (338)
Q Consensus 43 ~~pVI~VGNitvGGtGKTP~v~~l~~~l~~~g~~~~ilsRGYg~~~~~~~~v~~~~~~~~~vGDEp~lla~~~pv~-V~~ 121 (338)
++||+.|+-. -|+|||.+...|+++++ |.+++++.-..++..-..-... +.+.+-..+...+.-. ...
T Consensus 3 k~~v~~v~Gf--lGsGKTTll~~l~~~~~--~~k~~vi~~d~~~~~~d~~l~~-------~~~~~~~~~~~g~~~~~~~~ 71 (204)
T 1nij_A 3 PIAVTLLTGF--LGAGKTTLLRHILNEQH--GYKIAVIENEFGEVSVDDQLIG-------DRATQIKTLTNGCICCSRSN 71 (204)
T ss_dssp CEEEEEEEES--SSSSCHHHHHHHHHSCC--CCCEEEECSSCCSCCEEEEEEC-------TTSCEEEEETTSCEEECTTS
T ss_pred CCCEEEEEEC--CCCCHHHHHHHHHHCCC--CCCEEEEECCCCCCHHHHHHHH-------CCCCEEEEECCCCEEECCCH
T ss_conf 6578999718--78999999999983778--9968999778875200399983-------78952998628831411525
Q ss_pred CHHHHHHH------HCCCCCCEEEEC-CCC---------------CCCCCCCEEEEEEECCCCCCCCCCCCCCHHHHHCC
Q ss_conf 01225664------102457479971-832---------------23441230699996184335665537613652100
Q gi|254780401|r 122 DRKIGVQM------LLQEGVDIIIMD-DGF---------------HSADLQADFSLIVVNSHRGLGNGLVFPAGPLRVPL 179 (338)
Q Consensus 122 ~R~~~~~~------~~~~~~diiIlD-DGf---------------Qh~~l~rdl~Ivl~d~~~~~gn~~llPaGpLREp~ 179 (338)
+-..+.+. +...++|.|+.| .|. .+.....+.-++++|+..+- ..+--.+.+++
T Consensus 72 ~~~~~l~~~~~~~~a~~~~~d~ilie~~G~~~~~~~~~~~l~~~~~~~~~~~~~vi~vvda~~~~--~~~~~~~~~~~-- 147 (204)
T 1nij_A 72 ELEDALLDLLDNLDKGNIQFDRLVIECTGMADPGPIIQTFFSHEVLCQRYLLDGVIALVDAVHAD--EQMNQFTIAQS-- 147 (204)
T ss_dssp CHHHHHHHHHHHHHHTSCCCSEEEEEEETTCCHHHHHHHHHHSHHHHHHEEEEEEEEEEETTTHH--HHHHHCHHHHH--
T ss_pred HHHHHHHHHHHHHHHCCCCCCEEEEECCCCCCHHHHHHHHHHHHHHCCEEEECCEEEECHHHHHH--HHHHHHHHHHH--
T ss_conf 68999999999986167777669995167668699999986666424638865477831477788--86423255654--
Q ss_pred HHHHHHHHHHHHCCCCH
Q ss_conf 25566514544204412
Q gi|254780401|r 180 SRQLSYVDAILYVGNKK 196 (338)
Q Consensus 180 ~~~l~rad~vi~~~~~~ 196 (338)
.+.-||.+|+|+.+.
T Consensus 148 --q~~~ad~viitK~D~ 162 (204)
T 1nij_A 148 --QVGYADRILLTKTDV 162 (204)
T ss_dssp --HHHTCSEEEEECTTT
T ss_pred --HHCCCCEEEECCCCC
T ss_conf --303477466301101