Query gi|254780401|ref|YP_003064814.1| tetraacyldisaccharide 4'-kinase [Candidatus Liberibacter asiaticus str. psy62]
Match_columns 338
No_of_seqs 164 out of 1985
Neff 6.7
Searched_HMMs 33803
Date Wed Jun 1 12:45:31 2011
Command /home/congqian_1/programs/hhpred/hhsearch -i 254780401.hhm -d /home/congqian_1/database/mmdb/mmdb70.hhm
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 >1xjc_A MOBB protein homolog; 96.7 0.0057 1.7E-07 41.3 6.4 43 44-88 4-46 (169)
2 >2www_A Methylmalonic aciduria 96.3 0.0056 1.6E-07 41.4 4.3 147 40-198 70-226 (262)
3 >2px0_A Flagellar biosynthesis 96.0 0.024 7E-07 36.9 6.6 79 46-143 10-93 (187)
4 >1np6_A Molybdopterin-guanine 96.0 0.025 7.5E-07 36.7 6.5 43 41-85 3-45 (174)
5 >1ihu_A Arsenical pump-driving 95.7 0.013 3.7E-07 38.8 3.9 44 43-87 6-49 (303)
6 >1yrb_A ATP(GTP)binding protei 95.6 0.014 4E-07 38.6 3.8 154 41-196 11-183 (262)
7 >1vma_A Cell division protein 95.5 0.025 7.3E-07 36.8 5.0 79 46-143 107-195 (306)
8 >1nij_A Hypothetical protein Y 95.3 0.0053 1.6E-07 41.5 1.0 137 43-196 3-162 (204)
9 >1hyq_A MIND, cell division in 95.3 0.02 5.9E-07 37.4 3.9 39 45-84 3-41 (263)
10 >3c8u_A Fructokinase; YP_61236 95.2 0.03 8.7E-07 36.2 4.5 34 46-81 24-57 (146)
11 >3fgn_A Dethiobiotin synthetas 95.0 0.03 8.9E-07 36.2 4.1 42 39-81 21-62 (251)
12 >3cwq_A Para family chromosome 95.0 0.027 8.1E-07 36.4 3.9 36 45-81 1-36 (209)
13 >1qzx_A SRP54, signal recognit 94.9 0.027 8E-07 36.5 3.6 82 44-144 7-99 (193)
14 >2f1r_A Molybdopterin-guanine 94.8 0.025 7.3E-07 36.8 3.2 31 53-83 9-39 (121)
15 >1odf_A YGR205W, hypothetical 94.8 0.11 3.1E-06 32.3 6.4 34 48-81 33-69 (211)
16 >2oze_A ORF delta'; para, walk 94.8 0.023 6.9E-07 36.9 3.0 40 42-82 34-73 (298)
17 >2npi_A Protein CLP1; CLP1-PCF 94.7 0.05 1.5E-06 34.6 4.6 42 41-85 19-61 (211)
18 >2ph1_A Nucleotide-binding pro 94.6 0.033 9.8E-07 35.9 3.4 45 39-84 13-57 (228)
19 >1j8m_F SRP54, signal recognit 94.6 0.042 1.2E-06 35.1 3.9 28 54-81 15-42 (193)
20 >3iqw_A Tail-anchored protein 94.5 0.03 8.8E-07 36.2 3.1 43 43-86 14-56 (334)
21 >2woo_A ATPase GET3; tail-anch 94.5 0.034 1E-06 35.8 3.3 43 43-86 17-59 (329)
22 >1cp2_A CP2, nitrogenase iron 94.4 0.034 1E-06 35.8 3.2 34 54-87 9-42 (269)
23 >3e1s_A Exodeoxyribonuclease V 94.4 0.24 7.2E-06 29.7 7.5 27 55-81 64-90 (215)
24 >2qmo_A Dethiobiotin synthetas 94.3 0.034 1E-06 35.8 2.9 37 46-83 3-39 (220)
25 >1wcv_1 SOJ, segregation prote 94.3 0.038 1.1E-06 35.4 3.2 43 43-86 5-47 (257)
26 >2afh_E Nitrogenase iron prote 94.3 0.035 1E-06 35.7 3.0 32 54-85 10-41 (289)
27 >3end_A Light-independent prot 94.3 0.035 1E-06 35.7 3.0 41 45-87 42-82 (307)
28 >1byi_A Dethiobiotin synthase; 94.2 0.036 1.1E-06 35.6 2.9 37 45-82 2-38 (224)
29 >1g3q_A MIND ATPase, cell divi 94.2 0.057 1.7E-06 34.2 4.0 38 45-83 3-40 (237)
30 >1ihu_A Arsenical pump-driving 94.1 0.038 1.1E-06 35.4 3.0 42 43-85 22-63 (286)
31 >1a7j_A Phosphoribulokinase; t 94.0 0.074 2.2E-06 33.4 4.3 38 44-83 5-42 (290)
32 >3fkq_A NTRC-like two-domain p 94.0 0.037 1.1E-06 35.6 2.7 42 44-86 5-46 (235)
33 >3kjh_A CO dehydrogenase/acety 93.9 0.026 7.6E-07 36.6 1.7 30 54-83 8-37 (254)
34 >3igf_A ALL4481 protein; two-d 93.8 0.032 9.4E-07 36.0 2.1 36 45-81 2-37 (297)
35 >3ea0_A ATPase, para family; a 93.5 0.073 2.1E-06 33.4 3.5 40 44-84 4-44 (245)
36 >1w78_A FOLC bifunctional prot 93.4 0.68 2E-05 26.5 8.8 131 38-179 43-184 (286)
37 >2g0t_A Conserved hypothetical 93.3 0.18 5.3E-06 30.6 5.2 46 37-83 3-48 (191)
38 >3ez2_A Plasmid partition prot 93.0 0.073 2.2E-06 33.4 2.8 41 44-85 6-52 (296)
39 >3ez9_A Para; DNA binding, win 92.8 0.11 3.2E-06 32.2 3.5 46 42-88 4-55 (298)
40 >3cio_A ETK, tyrosine-protein 92.8 0.16 4.6E-06 31.1 4.3 41 41-82 101-141 (299)
41 >2woj_A ATPase GET3; tail-anch 92.4 0.11 3.2E-06 32.3 3.1 43 43-86 16-60 (354)
42 >1bif_A 6-phosphofructo-2-kina 92.4 0.049 1.5E-06 34.6 1.2 35 46-83 42-76 (231)
43 >2axn_A 6-phosphofructo-2-kina 92.3 0.046 1.4E-06 34.9 1.0 38 44-84 10-47 (218)
44 >2j9r_A Thymidine kinase; TK1, 92.3 0.37 1.1E-05 28.4 5.7 35 46-83 31-65 (167)
45 >3io3_A DEHA2D07832P; chaperon 91.7 0.15 4.4E-06 31.2 3.1 43 43-86 16-60 (348)
46 >1zu4_A FTSY; GTPase, signal r 91.5 0.16 4.8E-06 30.9 3.2 32 50-81 13-44 (203)
47 >3k9g_A PF-32 protein; ssgcid, 91.5 0.24 7E-06 29.8 3.9 44 39-83 22-65 (267)
48 >2b8t_A Thymidine kinase; deox 90.9 0.58 1.7E-05 27.0 5.4 26 56-81 22-47 (155)
49 >3bfv_A CAPA1, CAPB2, membrane 90.7 0.2 6.1E-06 30.2 3.0 42 40-82 78-119 (271)
50 >3bos_A Putative DNA replicati 90.4 0.67 2E-05 26.6 5.4 36 43-81 52-87 (175)
51 >1j6u_A UDP-N-acetylmuramate-a 89.7 0.76 2.2E-05 26.2 5.2 67 45-116 2-69 (195)
52 >3eag_A UDP-N-acetylmuramate:L 89.6 0.51 1.5E-05 27.4 4.3 43 43-89 2-44 (221)
53 >1rj9_A FTSY, signal recogniti 89.3 0.3 9E-06 29.0 3.0 31 53-83 14-44 (198)
54 >2get_A Pantothenate kinase; h 88.8 0.37 1.1E-05 28.4 3.1 29 53-81 97-127 (248)
55 >1o5z_A Folylpolyglutamate syn 88.2 2.1 6.1E-05 23.1 8.5 119 35-157 43-176 (304)
56 >3e70_C DPA, signal recognitio 88.1 0.46 1.4E-05 27.8 3.2 29 54-82 23-51 (200)
57 >3hn7_A UDP-N-acetylmuramate-L 87.1 0.71 2.1E-05 26.4 3.7 39 43-85 2-40 (255)
58 >1ls1_A Signal recognition par 87.0 0.54 1.6E-05 27.2 3.0 35 46-83 9-43 (185)
59 >2z4s_A Chromosomal replicatio 86.3 0.47 1.4E-05 27.7 2.4 31 43-76 130-160 (262)
60 >3cmw_A Protein RECA, recombin 86.1 0.58 1.7E-05 27.0 2.8 27 55-81 32-58 (274)
61 >3e2i_A Thymidine kinase; Zn-b 86.1 1.8 5.4E-05 23.5 5.3 72 55-143 37-110 (167)
62 >3cmw_A Protein RECA, recombin 85.8 0.61 1.8E-05 26.9 2.8 27 55-81 36-62 (279)
63 >1nks_A Adenylate kinase; ther 85.3 0.62 1.8E-05 26.8 2.6 32 55-86 10-41 (194)
64 >3cmw_A Protein RECA, recombin 84.9 0.76 2.2E-05 26.2 2.9 27 55-81 43-69 (289)
65 >2wtz_A UDP-N-acetylmuramoyl-L 84.8 2.7 8.1E-05 22.3 5.7 43 37-83 12-54 (241)
66 >2am1_A SP protein, UDP-N-acet 84.8 0.71 2.1E-05 26.4 2.7 40 42-86 17-56 (224)
67 >2ocp_A DGK, deoxyguanosine ki 83.9 0.41 1.2E-05 28.1 1.2 40 46-88 4-44 (241)
68 >2eyu_A Twitching motility pro 83.6 3.4 0.0001 21.6 5.8 35 49-83 25-63 (261)
69 >1nn5_A Similar to deoxythymid 83.5 1.9 5.7E-05 23.3 4.5 41 44-87 10-50 (215)
70 >3dmq_A RNA polymerase-associa 83.3 0.77 2.3E-05 26.2 2.4 27 55-81 30-58 (302)
71 >3do6_A Formate--tetrahydrofol 82.9 1.9 5.6E-05 23.4 4.3 196 41-282 40-268 (295)
72 >3b9q_A Chloroplast SRP recept 82.9 1 3E-05 25.3 2.9 35 46-83 11-45 (200)
73 >2og2_A Putative signal recogn 82.9 1 3E-05 25.3 2.9 35 46-83 11-45 (200)
74 >3cmu_A Protein RECA, recombin 82.8 0.86 2.5E-05 25.8 2.5 27 55-81 43-69 (286)
75 >3cmu_A Protein RECA, recombin 82.7 2.5 7.5E-05 22.5 4.9 27 55-81 36-62 (281)
76 >2gza_A Type IV secretion syst 82.4 3.8 0.00011 21.3 5.6 29 55-84 41-69 (218)
77 >1wrb_A DJVLGB; RNA helicase, 82.4 1.6 4.6E-05 24.0 3.6 103 55-160 69-182 (253)
78 >1xp8_A RECA protein, recombin 82.2 1.2 3.6E-05 24.7 3.1 27 55-81 13-39 (215)
79 >3cmw_A Protein RECA, recombin 81.3 1.2 3.6E-05 24.8 2.8 27 55-81 36-62 (279)
80 >1w36_D RECD, exodeoxyribonucl 81.3 1.3 3.8E-05 24.6 2.9 28 54-81 62-93 (263)
81 >2w58_A DNAI, primosome compon 81.2 1.4 4.1E-05 24.3 3.1 36 43-81 54-89 (202)
82 >3cmu_A Protein RECA, recombin 81.2 1.1 3.2E-05 25.1 2.5 27 55-81 36-62 (278)
83 >1kht_A Adenylate kinase; phos 81.1 1 3E-05 25.3 2.4 32 54-85 11-42 (192)
84 >4tmk_A Protein (thymidylate k 81.0 2.6 7.8E-05 22.4 4.4 40 45-87 5-44 (213)
85 >2jfg_A UDP-N-acetylmuramoylal 81.0 2.9 8.5E-05 22.1 4.6 35 44-82 2-36 (197)
86 >2i5e_A Hypothetical protein M 80.8 4.3 0.00013 20.9 6.5 38 52-89 9-62 (170)
87 >1osn_A Thymidine kinase, VZV- 80.7 1.9 5.6E-05 23.4 3.6 35 46-83 15-49 (341)
88 >1jbw_A Folylpolyglutamate syn 80.6 4.3 0.00013 20.8 7.2 115 38-157 33-164 (297)
89 >3cmu_A Protein RECA, recombin 80.5 1.2 3.6E-05 24.7 2.6 27 55-81 36-62 (278)
90 >1sxj_A Activator 1 95 kDa sub 80.3 2.8 8.4E-05 22.1 4.4 34 42-81 76-109 (208)
91 >3fe2_A Probable ATP-dependent 80.0 2.5 7.5E-05 22.5 4.1 99 53-159 73-183 (242)
92 >1p3d_A UDP-N-acetylmuramate-- 79.6 1.9 5.5E-05 23.4 3.3 38 45-86 3-40 (209)
93 >1e8c_A UDP-N-acetylmuramoylal 78.6 5 0.00015 20.4 5.9 44 36-83 10-53 (247)
94 >1xx6_A Thymidine kinase; X-RA 77.4 5.4 0.00016 20.2 5.6 27 55-81 17-43 (147)
95 >3lk7_A UDP-N-acetylmuramoylal 77.0 3.6 0.00011 21.4 4.1 34 44-81 1-34 (199)
96 >1p9r_A General secretion path 76.8 4.4 0.00013 20.8 4.5 26 55-80 30-55 (272)
97 >2oap_1 GSPE-2, type II secret 76.6 3.3 9.8E-05 21.7 3.8 29 55-84 9-37 (186)
98 >1eg7_A Formyltetrahydrofolate 76.6 4.3 0.00013 20.8 4.4 187 42-278 55-276 (308)
99 >2qy9_A Cell division protein 76.3 2.2 6.6E-05 22.9 2.9 30 54-83 15-44 (198)
100 >2eyq_A TRCF, transcription-re 76.0 5.8 0.00017 19.9 5.5 97 55-165 52-157 (202)
101 >2qgz_A Helicase loader, putat 75.9 2 6E-05 23.2 2.6 36 41-79 150-185 (308)
102 >2i3b_A HCR-ntpase, human canc 75.8 2.1 6.1E-05 23.1 2.6 29 55-83 10-38 (189)
103 >2pk3_A GDP-6-deoxy-D-LYXO-4-h 75.3 6.1 0.00018 19.8 6.1 43 52-96 16-58 (321)
104 >2f00_A UDP-N-acetylmuramate-- 75.3 2.9 8.7E-05 22.0 3.3 34 53-86 7-40 (209)
105 >2zr9_A Protein RECA, recombin 75.1 2.7 8.1E-05 22.2 3.1 27 55-81 36-62 (237)
106 >2pln_A HP1043, response regul 74.8 5.5 0.00016 20.1 4.6 48 115-162 43-96 (137)
107 >2jjm_A Glycosyl transferase, 74.7 1 3.1E-05 25.2 0.8 142 41-194 13-165 (216)
108 >2w0m_A SSO2452; RECA, SSPF, u 74.6 2.5 7.5E-05 22.5 2.8 34 46-82 26-59 (235)
109 >1l8q_A Chromosomal replicatio 74.6 2.9 8.6E-05 22.1 3.1 38 41-81 35-72 (166)
110 >3ice_A Transcription terminat 74.5 5.6 0.00017 20.0 4.6 97 50-157 37-143 (281)
111 >2r6a_A DNAB helicase, replica 74.5 3.8 0.00011 21.2 3.7 27 55-81 22-49 (264)
112 >2pt7_A CAG-ALFA; ATPase, prot 74.5 1.8 5.4E-05 23.5 2.1 34 44-81 34-67 (192)
113 >2wv9_A Flavivirin protease NS 73.7 2.9 8.6E-05 22.1 2.9 27 55-81 19-46 (243)
114 >2ffh_A Protein (FFH); SRP54, 73.4 3.2 9.6E-05 21.7 3.1 31 54-84 14-44 (190)
115 >1g5t_A COB(I)alamin adenosylt 73.3 6.7 0.0002 19.5 5.2 34 53-87 35-68 (196)
116 >2vhj_A Ntpase P4, P4; non- hy 72.6 4.6 0.00014 20.6 3.7 25 55-79 68-92 (267)
117 >1g8f_A Sulfate adenylyltransf 72.2 3.4 0.0001 21.6 3.0 56 55-126 13-74 (120)
118 >2qby_A CDC6 homolog 1, cell d 72.0 2 6E-05 23.2 1.8 28 46-76 48-75 (196)
119 >2yvu_A Probable adenylyl-sulf 71.8 2.7 8E-05 22.3 2.4 39 46-87 16-54 (186)
120 >2z0h_A DTMP kinase, thymidyla 71.6 4.5 0.00013 20.7 3.5 33 55-87 9-41 (197)
121 >1vm6_A DHPR, dihydrodipicolin 71.3 3.7 0.00011 21.3 3.0 33 53-87 17-49 (142)
122 >2v6i_A RNA helicase; membrane 71.3 4.6 0.00013 20.7 3.5 27 55-81 11-38 (225)
123 >1hqc_A RUVB; extended AAA-ATP 71.2 2.3 6.9E-05 22.7 2.0 29 42-73 37-65 (167)
124 >3b85_A Phosphate starvation-i 71.2 4.6 0.00014 20.6 3.5 26 55-80 31-56 (194)
125 >2zan_A Vacuolar protein sorti 71.2 5.6 0.00016 20.1 3.9 34 257-290 208-242 (300)
126 >1gm5_A RECG; helicase, replic 71.1 7.5 0.00022 19.1 7.0 27 55-81 52-78 (203)
127 >2qm8_A GTPase/ATPase; G prote 71.1 7.5 0.00022 19.1 8.4 137 43-197 54-206 (337)
128 >1g41_A Heat shock protein HSL 71.0 1.7 5.1E-05 23.7 1.2 40 42-87 49-94 (335)
129 >2fi1_A Hydrolase, haloacid de 70.6 4.6 0.00014 20.6 3.4 89 54-147 13-119 (124)
130 >1w36_B RECB, exodeoxyribonucl 70.6 1.9 5.5E-05 23.4 1.3 39 44-85 17-55 (243)
131 >2qby_B CDC6 homolog 3, cell d 70.5 2.3 6.8E-05 22.8 1.8 27 44-73 46-72 (196)
132 >1pfk_A Phosphofructokinase; t 70.4 5.1 0.00015 20.3 3.5 111 49-160 5-125 (185)
133 >2p65_A Hypothetical protein P 70.4 2.1 6.2E-05 23.1 1.6 29 44-75 44-72 (187)
134 >1gtv_A TMK, thymidylate kinas 70.0 1.7 4.9E-05 23.8 1.0 32 55-86 9-40 (214)
135 >3ld9_A DTMP kinase, thymidyla 70.0 2.9 8.6E-05 22.1 2.2 40 45-87 23-62 (223)
136 >1cqx_A Flavohemoprotein; glob 70.0 3.6 0.00011 21.4 2.7 33 44-80 7-39 (143)
137 >1fnn_A CDC6P, cell division c 69.6 4.2 0.00012 20.9 3.0 28 46-76 47-74 (192)
138 >2oca_A DAR protein, ATP-depen 68.8 7 0.00021 19.3 4.0 125 54-198 49-178 (202)
139 >3hdt_A Putative kinase; struc 68.4 0.81 2.4E-05 26.0 -0.9 37 43-82 13-50 (223)
140 >2chq_A Replication factor C s 68.3 1.7 4.9E-05 23.8 0.7 31 44-77 39-69 (160)
141 >1uj2_A Uridine-cytidine kinas 68.1 5.9 0.00017 19.9 3.5 35 47-81 23-62 (188)
142 >3bgw_A DNAB-like replicative 68.1 4.3 0.00013 20.8 2.8 27 55-81 23-49 (261)
143 >3bh0_A DNAB-like replicative 68.1 4.9 0.00014 20.5 3.0 28 55-82 28-55 (266)
144 >2gk6_A Regulator of nonsense 67.9 4.9 0.00014 20.4 3.0 28 56-83 60-87 (263)
145 >3h1t_A Type I site-specific r 67.9 5.2 0.00015 20.3 3.2 22 54-75 37-58 (192)
146 >2vbc_A Dengue 4 NS3 FULL-leng 67.9 4.7 0.00014 20.6 2.9 27 55-81 20-47 (229)
147 >2qxy_A Response regulator; re 67.8 3.2 9.6E-05 21.7 2.1 48 115-162 29-85 (142)
148 >2wjy_A Regulator of nonsense 67.7 4.9 0.00014 20.4 3.0 28 56-83 60-87 (263)
149 >1p5z_B DCK, deoxycytidine kin 67.5 0.37 1.1E-05 28.4 -2.8 43 45-90 25-68 (263)
150 >2ewv_A Twitching motility pro 67.5 8.1 0.00024 18.9 4.1 26 55-80 21-47 (248)
151 >2oyc_A PLP phosphatase, pyrid 67.4 8.9 0.00026 18.6 5.6 62 222-287 19-93 (140)
152 >1p6x_A Thymidine kinase; P-lo 67.1 2.1 6.4E-05 23.0 1.1 33 48-83 12-44 (334)
153 >1ye8_A Protein THEP1, hypothe 66.8 4.4 0.00013 20.8 2.6 94 54-148 8-113 (178)
154 >1yks_A Genome polyprotein [co 66.8 5.2 0.00015 20.3 3.0 27 55-81 17-44 (230)
155 >3cmu_A Protein RECA, recombin 66.1 5 0.00015 20.4 2.8 27 55-81 32-58 (233)
156 >2is6_A DNA helicase II; hydro 66.0 6 0.00018 19.8 3.2 35 44-81 23-61 (201)
157 >2j37_W Signal recognition par 65.9 6.1 0.00018 19.8 3.2 30 53-82 13-42 (190)
158 >1kjn_A MTH0777; hypotethical 65.9 5.6 0.00017 20.0 3.0 23 59-81 21-43 (157)
159 >1u0j_A DNA replication protei 65.8 4.5 0.00013 20.7 2.5 67 26-95 24-90 (204)
160 >3dhn_A NAD-dependent epimeras 65.8 5.9 0.00017 19.9 3.1 35 52-88 8-42 (227)
161 >1f0k_A MURG, UDP-N-acetylgluc 65.3 9.8 0.00029 18.3 4.3 33 55-87 15-47 (196)
162 >1rz3_A Hypothetical protein r 65.0 6.1 0.00018 19.7 3.1 40 44-86 22-62 (201)
163 >1jbk_A CLPB protein; beta bar 65.0 3 9E-05 21.9 1.5 30 42-74 42-71 (195)
164 >2pez_A Bifunctional 3'-phosph 64.2 5.9 0.00017 19.9 2.8 33 55-87 14-46 (179)
165 >1gg4_A UDP-N-acetylmuramoylal 64.1 4.1 0.00012 21.0 2.0 37 41-81 16-52 (231)
166 >3hws_A ATP-dependent CLP prot 64.0 2.9 8.5E-05 22.1 1.2 36 40-81 48-83 (255)
167 >2v1u_A Cell division control 63.5 3.8 0.00011 21.2 1.8 30 44-76 45-74 (200)
168 >2p67_A LAO/AO transport syste 63.5 11 0.00031 18.1 5.4 42 43-87 55-97 (265)
169 >2v54_A DTMP kinase, thymidyla 63.3 4 0.00012 21.0 1.9 35 46-83 7-41 (204)
170 >1oc2_A DTDP-glucose 4,6-dehyd 63.0 11 0.00032 18.0 5.3 32 52-85 8-39 (329)
171 >1nlf_A Regulatory protein REP 62.9 8.9 0.00026 18.6 3.6 26 55-80 17-42 (257)
172 >1vl0_A DTDP-4-dehydrorhamnose 62.8 11 0.00032 18.0 4.2 63 221-285 187-249 (292)
173 >2j28_9 Signal recognition par 62.8 3.2 9.4E-05 21.8 1.3 100 46-162 11-133 (239)
174 >1qvr_A CLPB protein; coiled c 62.6 4.4 0.00013 20.8 2.0 29 43-74 46-74 (186)
175 >3ec2_A DNA replication protei 62.5 3.7 0.00011 21.3 1.6 37 41-80 36-72 (180)
176 >1w5s_A ORC2; CDC6, DNA replic 62.5 4.1 0.00012 21.0 1.8 25 46-73 55-79 (214)
177 >1r6b_X CLPA protein; AAA+, N- 62.4 4.1 0.00012 21.0 1.8 29 44-75 52-80 (192)
178 >2orw_A Thymidine kinase; TMTK 62.4 11 0.00033 17.9 5.4 27 55-81 12-38 (142)
179 >2chg_A Replication factor C s 62.3 4.2 0.00013 20.9 1.8 31 44-77 39-69 (160)
180 >2w00_A HSDR, R.ECOR124I; ATP- 62.1 11 0.00033 17.9 6.4 28 54-81 35-64 (199)
181 >2pbr_A DTMP kinase, thymidyla 62.0 9 0.00027 18.6 3.5 30 55-84 9-38 (195)
182 >1of1_A Thymidine kinase; tran 62.0 3.8 0.00011 21.3 1.5 36 43-81 48-84 (376)
183 >2plr_A DTMP kinase, probable 61.9 5.9 0.00017 19.9 2.5 30 55-84 13-42 (213)
184 >1ofh_A ATP-dependent HSL prot 61.7 3.9 0.00011 21.2 1.6 31 40-73 47-77 (201)
185 >1gvn_B Zeta; postsegregationa 61.6 4.9 0.00015 20.4 2.1 25 46-73 36-60 (287)
186 >2v3c_C SRP54, signal recognit 61.4 7.1 0.00021 19.3 2.8 30 55-84 17-46 (188)
187 >1in4_A RUVB, holliday junctio 61.1 4 0.00012 21.0 1.6 37 41-83 49-85 (179)
188 >1nkt_A Preprotein translocase 61.0 9.1 0.00027 18.5 3.4 102 45-162 121-241 (311)
189 >2ggs_A 273AA long hypothetica 61.0 10 0.00031 18.1 3.6 33 52-86 4-36 (273)
190 >3c97_A Signal transduction hi 61.0 10 0.00031 18.1 3.7 27 115-141 35-61 (65)
191 >2jlq_A Serine protease subuni 61.0 7.7 0.00023 19.0 3.0 27 55-81 28-55 (237)
192 >1qvr_A CLPB protein; coiled c 61.0 12 0.00034 17.8 5.7 40 38-80 44-83 (218)
193 >1a5t_A Delta prime, HOLB; zin 61.0 4 0.00012 21.1 1.5 31 41-74 22-52 (166)
194 >1u94_A RECA protein, recombin 60.9 8.1 0.00024 18.9 3.1 27 55-81 36-62 (237)
195 >2gks_A Bifunctional SAT/APS k 60.9 7.4 0.00022 19.2 2.9 28 55-82 13-40 (178)
196 >2p6r_A Afuhel308 helicase; pr 60.8 2.3 6.8E-05 22.8 0.3 27 55-81 49-75 (202)
197 >3bs4_A Uncharacterized protei 60.4 6.9 0.0002 19.4 2.6 28 55-82 30-57 (260)
198 >1tf7_A KAIC; homohexamer, hex 60.3 8.4 0.00025 18.8 3.1 27 55-81 36-62 (271)
199 >3ehe_A UDP-glucose 4-epimeras 60.1 10 0.0003 18.2 3.5 33 52-86 5-37 (166)
200 >1vp8_A Hypothetical protein A 59.9 0.19 5.6E-06 30.5 -5.4 29 119-147 50-79 (201)
201 >2ccj_A DTMP kinase, thymidyla 59.8 7.3 0.00022 19.2 2.7 30 55-84 11-40 (205)
202 >1cr0_A DNA primase/helicase; 59.6 8.8 0.00026 18.6 3.1 30 55-84 21-51 (273)
203 >2dr3_A UPF0273 protein PH0284 59.6 8.8 0.00026 18.6 3.1 28 55-82 32-59 (247)
204 >1zxx_A 6-phosphofructokinase; 59.5 8.7 0.00026 18.7 3.0 111 49-160 4-124 (182)
205 >2c20_A UDP-glucose 4-epimeras 59.4 12 0.00036 17.6 4.6 34 52-87 5-38 (330)
206 >2pia_A Phthalate dioxygenase 59.4 6 0.00018 19.8 2.2 29 52-80 8-36 (121)
207 >1sxj_D Activator 1 41 kDa sub 59.4 4.5 0.00013 20.7 1.5 26 45-73 60-85 (191)
208 >2qz4_A Paraplegin; AAA+, SPG7 59.2 4.5 0.00013 20.7 1.5 32 44-81 40-71 (177)
209 >3ew7_A LMO0794 protein; Q8Y8U 59.2 12 0.00037 17.6 4.1 33 52-86 4-36 (221)
210 >1q57_A DNA primase/helicase; 59.0 5.1 0.00015 20.3 1.8 29 55-83 21-50 (273)
211 >1uaa_A REP helicase, protein 58.9 6.7 0.0002 19.5 2.4 28 54-81 23-54 (195)
212 >3cmw_A Protein RECA, recombin 58.9 8.1 0.00024 18.9 2.8 27 55-81 36-62 (237)
213 >1njg_A DNA polymerase III sub 58.9 4.6 0.00014 20.7 1.5 32 40-74 42-73 (185)
214 >3cmu_A Protein RECA, recombin 58.9 8.1 0.00024 18.9 2.8 27 55-81 36-62 (237)
215 >1orr_A CDP-tyvelose-2-epimera 58.8 13 0.00037 17.5 6.2 31 52-84 5-35 (347)
216 >1e9r_A Conjugal transfer prot 58.8 8.4 0.00025 18.8 2.8 27 55-81 39-65 (274)
217 >2v9p_A Replication protein E1 58.7 11 0.00032 18.0 3.4 32 39-73 46-77 (229)
218 >1rif_A DAR protein, DNA helic 58.5 7.6 0.00022 19.1 2.6 28 54-81 49-77 (195)
219 >1m8p_A Sulfate adenylyltransf 58.1 7.4 0.00022 19.2 2.5 31 54-84 13-43 (182)
220 >3tmk_A Thymidylate kinase; ph 58.1 6.7 0.0002 19.5 2.3 32 45-79 7-38 (216)
221 >3kx2_B PRE-mRNA-splicing fact 58.1 13 0.00038 17.4 4.0 12 232-243 144-155 (222)
222 >3pfk_A Phosphofructokinase; t 57.5 12 0.00035 17.7 3.4 111 49-160 4-124 (186)
223 >2b69_A UDP-glucuronate decarb 57.4 13 0.00039 17.4 4.1 31 53-85 32-62 (198)
224 >3h4m_A Proteasome-activating 57.3 5.6 0.00016 20.0 1.7 24 55-81 60-83 (187)
225 >1d2n_A N-ethylmaleimide-sensi 57.3 5.1 0.00015 20.3 1.6 29 42-73 63-91 (196)
226 >2bll_A Protein YFBG; decarbox 56.6 14 0.00041 17.3 4.2 33 52-86 4-36 (345)
227 >1iy2_A ATP-dependent metallop 56.6 4.6 0.00014 20.6 1.2 34 42-81 72-105 (210)
228 >3h2s_A Putative NADH-flavin r 56.5 14 0.00041 17.3 4.1 32 52-85 4-35 (224)
229 >3gpi_A NAD-dependent epimeras 56.5 14 0.00041 17.3 6.0 38 52-91 6-43 (286)
230 >2c9o_A RUVB-like 1; hexameric 56.5 14 0.00041 17.3 5.4 37 39-81 59-95 (365)
231 >3cr8_A Sulfate adenylyltranfe 56.3 5.8 0.00017 19.9 1.7 37 45-84 7-43 (188)
232 >2zxe_A Na, K-ATPase alpha sub 56.2 14 0.00041 17.2 4.2 27 55-81 22-48 (185)
233 >2q6t_A DNAB replication FORK 56.1 11 0.00032 18.0 3.1 28 55-82 31-59 (266)
234 >3d8b_A Fidgetin-like protein 56.0 4.5 0.00013 20.7 1.1 27 43-72 117-143 (268)
235 >3iru_A Phoshonoacetaldehyde h 55.9 14 0.00042 17.2 5.4 42 43-84 5-51 (172)
236 >2q1w_A Putative nucleotide su 55.7 14 0.00042 17.2 4.2 33 52-86 25-57 (333)
237 >1qgu_B Protein (nitrogenase m 55.7 13 0.00039 17.4 3.4 34 220-253 79-112 (240)
238 >2p5t_B PEZT; postsegregationa 55.5 6.1 0.00018 19.8 1.7 34 42-81 31-64 (253)
239 >3gi1_A LBP, laminin-binding p 55.5 14 0.00042 17.2 4.2 94 235-330 10-105 (109)
240 >1pjr_A PCRA; DNA repair, DNA 54.9 12 0.00035 17.7 3.1 28 54-81 32-63 (200)
241 >3dqp_A Oxidoreductase YLBE; a 54.8 15 0.00043 17.1 4.0 35 52-88 4-38 (219)
242 >2bka_A CC3, TAT-interacting p 54.6 13 0.0004 17.3 3.3 33 52-86 22-54 (242)
243 >2z83_A Helicase/nucleoside tr 54.4 11 0.00034 17.8 2.9 27 55-81 30-57 (240)
244 >1u2p_A Ptpase, low molecular 54.3 8.5 0.00025 18.7 2.3 40 42-86 5-47 (163)
245 >1um8_A ATP-dependent CLP prot 54.3 5.3 0.00016 20.2 1.2 37 39-81 68-104 (272)
246 >2gno_A DNA polymerase III, ga 54.1 5.8 0.00017 19.9 1.4 22 55-76 27-48 (140)
247 >1f6b_A SAR1; gtpases, N-termi 54.0 5.9 0.00018 19.9 1.4 27 38-67 20-46 (198)
248 >1x6v_B Bifunctional 3'-phosph 54.0 9.3 0.00027 18.5 2.4 38 46-86 55-92 (233)
249 >1hdo_A Biliverdin IX beta red 53.8 15 0.00045 17.0 4.1 33 52-86 7-39 (206)
250 >3eie_A Vacuolar protein sorti 53.6 6.1 0.00018 19.8 1.4 26 44-72 52-77 (204)
251 >1iqp_A RFCS; clamp loader, ex 53.5 6.9 0.0002 19.4 1.7 30 45-77 48-77 (168)
252 >2gn4_A FLAA1 protein, UDP-GLC 53.3 15 0.00045 16.9 3.6 32 52-85 25-56 (344)
253 >2c5a_A GDP-mannose-3', 5'-epi 53.3 14 0.00043 17.1 3.3 33 52-86 33-65 (379)
254 >2zpa_A Uncharacterized protei 53.2 5.4 0.00016 20.2 1.1 25 54-81 34-58 (153)
255 >3c1o_A Eugenol synthase; phen 53.0 16 0.00046 16.9 6.7 32 52-85 8-39 (321)
256 >1htw_A HI0065; nucleotide-bin 52.8 5.8 0.00017 19.9 1.2 34 45-84 35-68 (158)
257 >3cpe_A Terminase, DNA packagi 52.4 16 0.00047 16.8 3.4 27 55-81 42-70 (238)
258 >3i6i_A Putative leucoanthocya 52.3 16 0.00047 16.8 4.1 67 222-288 189-257 (346)
259 >2db3_A ATP-dependent RNA heli 52.1 12 0.00037 17.6 2.8 43 231-273 184-232 (271)
260 >3b9p_A CG5977-PA, isoform A; 51.9 6.1 0.00018 19.8 1.2 33 43-81 54-86 (188)
261 >2r2a_A Uncharacterized protei 51.9 4.6 0.00014 20.6 0.6 21 56-76 15-35 (199)
262 >3d3j_A Enhancer of mRNA-decap 51.6 16 0.00048 16.7 6.0 152 43-240 133-286 (306)
263 >1z7e_A Protein aRNA; rossmann 51.4 16 0.00049 16.7 4.2 32 52-85 17-48 (358)
264 >1q0u_A Bstdead; DEAD protein, 51.1 6.9 0.0002 19.4 1.4 93 55-159 50-157 (219)
265 >1wp9_A ATP-dependent RNA heli 51.0 17 0.00049 16.7 5.3 27 55-81 32-59 (196)
266 >1tf7_A KAIC; homohexamer, hex 51.0 13 0.00039 17.4 2.8 31 55-85 48-79 (254)
267 >1n2s_A DTDP-4-, DTDP-glucose 50.9 13 0.00037 17.5 2.7 33 52-86 4-36 (299)
268 >1ja1_A NADPH-cytochrome P450 50.8 12 0.00035 17.7 2.6 28 42-73 5-32 (159)
269 >2oil_A CATX-8, RAS-related pr 50.8 7.6 0.00023 19.1 1.6 26 40-68 22-47 (193)
270 >2ce7_A Cell division protein 50.7 7.5 0.00022 19.1 1.5 33 43-81 49-81 (185)
271 >1m1n_B Nitrogenase molybdenum 50.7 17 0.0005 16.6 3.6 70 61-141 66-137 (215)
272 >1e32_A P97; membrane fusion; 50.6 6.6 0.00019 19.5 1.2 34 42-81 40-73 (174)
273 >1ixz_A ATP-dependent metallop 50.5 6.7 0.0002 19.5 1.2 30 46-81 52-81 (185)
274 >2hqr_A Putative transcription 50.5 17 0.0005 16.6 4.7 48 115-162 25-78 (99)
275 >2p5y_A UDP-glucose 4-epimeras 50.4 17 0.0005 16.6 3.8 33 52-86 4-36 (311)
276 >1lv7_A FTSH; alpha/beta domai 50.2 7.7 0.00023 19.0 1.5 34 42-81 44-77 (181)
277 >1vzy_A 33 kDa chaperonin; cha 50.1 12 0.00035 17.7 2.5 40 234-273 14-53 (54)
278 >1mio_B Nitrogenase molybdenum 50.1 17 0.00051 16.6 4.0 82 61-158 13-98 (109)
279 >3ius_A Uncharacterized conser 50.1 17 0.00051 16.6 3.9 33 52-86 8-40 (286)
280 >3cg0_A Response regulator rec 50.1 7.9 0.00023 19.0 1.6 30 115-144 34-64 (91)
281 >1qyd_A Pinoresinol-lariciresi 50.1 15 0.00045 16.9 3.0 60 222-281 188-248 (313)
282 >3iuy_A Probable ATP-dependent 50.0 16 0.00049 16.7 3.2 101 54-160 65-175 (228)
283 >2qp9_X Vacuolar protein sorti 50.0 7.8 0.00023 19.0 1.5 35 41-81 82-116 (237)
284 >2vsf_A XPD, DNA repair helica 49.9 4.3 0.00013 20.9 0.2 30 55-84 13-43 (234)
285 >2qt1_A Nicotinamide riboside 49.7 12 0.00035 17.7 2.4 32 44-81 21-52 (207)
286 >1vq0_A 33 kDa chaperonin; TM1 49.5 18 0.00052 16.5 3.8 42 234-276 15-56 (58)
287 >1zak_A Adenylate kinase; ATP: 49.4 5.9 0.00017 19.9 0.8 39 44-85 6-44 (222)
288 >1iuk_A Hypothetical protein T 49.4 18 0.00052 16.5 4.5 89 53-148 18-109 (140)
289 >2dcl_A Hypothetical UPF0166 p 49.3 18 0.00052 16.5 5.2 84 59-165 24-116 (127)
290 >2qen_A Walker-type ATPase; un 49.3 5.5 0.00016 20.1 0.7 32 46-80 34-65 (202)
291 >2iw3_A Elongation factor 3A; 49.2 5.2 0.00015 20.3 0.5 96 49-147 37-152 (227)
292 >1xvl_A Mn transporter, MNTC p 49.2 18 0.00052 16.5 3.8 50 235-284 11-60 (90)
293 >1ep3_B Dihydroorotate dehydro 49.2 13 0.0004 17.3 2.6 38 43-88 7-44 (159)
294 >1e2k_A Thymidine kinase; tran 49.1 5.3 0.00016 20.2 0.5 38 46-86 6-44 (331)
295 >2i4i_A ATP-dependent RNA heli 49.1 4.1 0.00012 21.0 -0.0 49 95-143 108-160 (245)
296 >1gvh_A Flavohemoprotein; oxid 48.9 17 0.0005 16.6 3.1 34 44-81 7-40 (143)
297 >1ulu_A Enoyl-acyl carrier pro 48.9 18 0.00053 16.4 3.8 32 52-83 12-43 (261)
298 >1rpn_A GDP-mannose 4,6-dehydr 48.6 18 0.00053 16.4 4.2 33 52-86 18-50 (189)
299 >2qr3_A Two-component system r 48.5 10 0.00031 18.1 1.9 27 115-141 28-54 (140)
300 >2pl3_A Probable ATP-dependent 48.4 16 0.00046 16.9 2.8 99 54-160 46-155 (212)
301 >1ddg_A Sulfite reductase (NAD 48.3 15 0.00045 17.0 2.8 34 43-80 5-38 (152)
302 >2rc5_A Ferredoxin-NADP reduct 48.2 13 0.00038 17.4 2.4 26 44-73 10-35 (158)
303 >1eq2_A ADP-L-glycero-D-mannoh 48.2 18 0.00054 16.4 4.0 33 52-86 3-35 (310)
304 >2i1q_A DNA repair and recombi 48.0 4.9 0.00015 20.4 0.2 28 55-82 43-70 (258)
305 >2jaq_A Deoxyguanosine kinase; 48.0 3.8 0.00011 21.2 -0.3 28 55-82 9-36 (205)
306 >3a4m_A L-seryl-tRNA(SEC) kina 47.9 15 0.00044 17.0 2.7 29 54-82 12-40 (182)
307 >2jeo_A Uridine-cytidine kinas 47.6 15 0.00044 17.0 2.6 36 45-82 26-66 (181)
308 >3i0z_A Putative tagatose-6-ph 47.5 19 0.00055 16.3 3.4 32 55-86 63-96 (119)
309 >2rgx_A Adenylate kinase; tran 47.5 9.1 0.00027 18.5 1.5 18 55-72 9-26 (148)
310 >1ly1_A Polynucleotide kinase; 47.3 11 0.00031 18.1 1.9 24 55-82 11-34 (114)
311 >1aw2_A Triosephosphate isomer 47.1 4.8 0.00014 20.5 0.1 20 225-244 232-251 (256)
312 >1m7g_A Adenylylsulfate kinase 47.0 11 0.00033 17.9 1.9 30 55-84 34-63 (211)
313 >2r6j_A Eugenol synthase 1; ph 47.0 19 0.00056 16.2 3.3 69 222-290 182-252 (318)
314 >1e6u_A GDP-fucose synthetase; 46.6 19 0.00057 16.2 3.5 34 52-87 7-40 (321)
315 >3dkp_A Probable ATP-dependent 46.6 12 0.00036 17.6 2.1 96 54-160 74-183 (245)
316 >1rkb_A Protein AD-004, protei 46.5 9.6 0.00028 18.4 1.5 23 46-71 7-29 (173)
317 >1qf9_A UMP/CMP kinase, protei 46.5 7.7 0.00023 19.0 1.0 22 55-76 15-36 (194)
318 >3e48_A Putative nucleoside-di 46.5 19 0.00057 16.2 3.7 67 221-288 164-230 (289)
319 >2hun_A 336AA long hypothetica 46.3 20 0.00058 16.2 4.4 33 52-86 7-39 (336)
320 >1jr3_A DNA polymerase III sub 46.1 9.8 0.00029 18.3 1.5 33 38-73 33-65 (177)
321 >2gk4_A Conserved hypothetical 46.0 9.7 0.00029 18.3 1.5 33 45-82 19-51 (232)
322 >2dwc_A PH0318, 433AA long hyp 46.0 20 0.00058 16.1 3.2 61 226-286 22-92 (108)
323 >2z1m_A GDP-D-mannose dehydrat 45.8 20 0.00059 16.1 3.8 30 52-83 7-36 (178)
324 >3eme_A Rhodanese-like domain 45.6 13 0.00037 17.5 2.0 82 63-150 6-96 (103)
325 >1xwi_A SKD1 protein; VPS4B, A 45.6 14 0.0004 17.3 2.2 36 42-83 44-79 (178)
326 >2o0j_A Terminase, DNA packagi 45.4 20 0.00058 16.1 3.0 27 55-81 23-51 (221)
327 >1sxj_B Activator 1 37 kDa sub 45.4 10 0.0003 18.2 1.5 26 45-73 44-69 (166)
328 >2a9o_A Response regulator; es 45.2 20 0.0006 16.1 3.8 26 116-141 27-52 (120)
329 >2obl_A ESCN; ATPase, hydrolas 45.1 19 0.00057 16.2 2.9 30 50-80 75-104 (271)
330 >3eph_A TRNA isopentenyltransf 45.0 11 0.00031 18.1 1.6 129 46-198 5-148 (270)
331 >2g4r_A MOGA, molybdopterin bi 44.9 20 0.0006 16.0 5.0 36 43-78 5-40 (160)
332 >2o1e_A YCDH; alpha-beta prote 44.9 20 0.00061 16.0 3.3 51 234-284 8-58 (82)
333 >1moz_A ARL1, ADP-ribosylation 44.9 17 0.00051 16.6 2.6 33 34-73 9-41 (183)
334 >3hbm_A UDP-sugar hydrolase; P 44.8 17 0.0005 16.6 2.6 40 42-84 7-46 (134)
335 >2fna_A Conserved hypothetical 44.6 11 0.00032 18.0 1.5 34 43-82 30-63 (208)
336 >3ixz_A Potassium-transporting 44.5 21 0.00061 16.0 4.1 21 61-81 31-51 (187)
337 >2fg5_A RAB-22B, RAS-related p 44.4 15 0.00046 16.9 2.3 24 43-69 23-46 (192)
338 >3foj_A Uncharacterized protei 44.3 13 0.00039 17.4 2.0 82 63-150 6-96 (100)
339 >1yzq_A Small GTP binding prot 44.3 15 0.00044 17.0 2.2 24 42-68 5-28 (170)
340 >1xgk_A Nitrogen metabolite re 44.3 21 0.00062 16.0 4.1 33 52-86 9-41 (352)
341 >2p4h_X Vestitone reductase; N 44.2 21 0.00062 16.0 3.9 33 52-86 5-37 (322)
342 >3gk5_A Uncharacterized rhodan 44.1 14 0.0004 17.3 2.0 48 102-149 43-94 (108)
343 >3kbq_A Protein TA0487; struct 44.1 21 0.00062 16.0 4.4 35 44-78 6-40 (172)
344 >1p9o_A Phosphopantothenoylcys 44.1 9.4 0.00028 18.4 1.2 35 44-83 54-88 (313)
345 >2cvh_A DNA repair and recombi 43.6 8.3 0.00025 18.8 0.9 27 55-81 29-55 (220)
346 >3cm0_A Adenylate kinase; ATP- 43.6 11 0.00033 17.9 1.5 19 55-73 13-31 (186)
347 >1x1r_A RAS-related protein M- 43.6 13 0.00037 17.6 1.8 26 40-68 10-35 (178)
348 >1sxj_E Activator 1 40 kDa sub 43.5 21 0.00063 15.9 3.9 40 33-75 26-65 (192)
349 >2whl_A Beta-mannanase, baman5 43.2 22 0.00064 15.9 5.4 28 259-286 195-222 (258)
350 >3k1z_A Haloacid dehalogenase- 43.2 16 0.00047 16.8 2.2 26 60-85 24-49 (179)
351 >3enk_A UDP-glucose 4-epimeras 43.1 22 0.00064 15.8 3.8 31 52-84 9-39 (341)
352 >2pzm_A Putative nucleotide su 42.8 22 0.00065 15.8 4.3 32 53-86 25-56 (184)
353 >3bk7_A ABC transporter ATP-bi 42.7 9.1 0.00027 18.5 1.0 95 54-148 44-157 (226)
354 >2bdt_A BH3686; alpha-beta pro 42.5 9.8 0.00029 18.3 1.1 16 55-70 11-26 (189)
355 >2fn4_A P23, RAS-related prote 42.4 14 0.00042 17.2 1.9 28 39-69 5-32 (181)
356 >1ukz_A Uridylate kinase; tran 42.4 9.9 0.00029 18.3 1.1 25 46-73 17-42 (203)
357 >3dm5_A SRP54, signal recognit 42.4 22 0.00066 15.8 3.1 31 52-82 13-43 (192)
358 >1z45_A GAL10 bifunctional pro 42.4 22 0.00066 15.8 4.2 31 52-84 15-45 (354)
359 >1knq_A Gluconate kinase; ALFA 42.4 12 0.00036 17.7 1.5 19 55-73 17-35 (175)
360 >1rkx_A CDP-glucose-4,6-dehydr 42.3 22 0.00066 15.8 4.9 34 52-87 13-46 (357)
361 >2wm8_A MDP-1, magnesium-depen 42.2 22 0.00066 15.8 5.4 27 59-85 43-69 (161)
362 >1ak2_A Adenylate kinase isoen 42.2 12 0.00036 17.6 1.5 27 44-73 17-43 (185)
363 >2qzj_A Two-component response 42.1 22 0.00067 15.7 4.2 28 116-143 30-57 (136)
364 >3ch4_B Pmkase, phosphomevalon 42.0 8.8 0.00026 18.6 0.8 35 46-83 14-48 (202)
365 >1via_A Shikimate kinase; stru 42.0 12 0.00036 17.6 1.5 23 46-71 7-29 (175)
366 >2f9l_A RAB11B, member RAS onc 41.9 18 0.00054 16.4 2.4 31 44-77 6-36 (199)
367 >1tev_A UMP-CMP kinase; ploop, 41.8 13 0.00037 17.5 1.5 28 46-76 6-33 (196)
368 >2pt5_A Shikimate kinase, SK; 41.8 12 0.00037 17.6 1.5 17 55-71 9-25 (168)
369 >2dhr_A FTSH; AAA+ protein, he 41.8 11 0.00033 17.9 1.2 29 50-81 66-96 (200)
370 >1ltq_A Polynucleotide kinase; 41.7 11 0.00031 18.1 1.1 24 55-82 11-34 (114)
371 >3e8x_A Putative NAD-dependent 41.7 23 0.00068 15.7 4.1 31 52-84 25-55 (236)
372 >1sxj_C Activator 1 40 kDa sub 41.7 13 0.00038 17.5 1.6 25 46-73 49-73 (168)
373 >3ber_A Probable ATP-dependent 41.5 23 0.00068 15.7 3.7 94 55-160 89-194 (249)
374 >1z0f_A RAB14, member RAS onco 41.4 12 0.00037 17.6 1.5 25 41-68 13-37 (179)
375 >2efe_B Small GTP-binding prot 41.1 12 0.00035 17.8 1.3 25 41-68 10-34 (181)
376 >1qhx_A CPT, protein (chloramp 41.1 11 0.00034 17.8 1.2 27 46-75 6-32 (178)
377 >3c3m_A Response regulator rec 41.1 23 0.00069 15.6 4.1 25 117-141 30-54 (108)
378 >2a5j_A RAS-related protein RA 41.0 13 0.00039 17.4 1.5 25 41-68 19-43 (191)
379 >2c95_A Adenylate kinase 1; AP 40.8 13 0.00039 17.3 1.5 27 44-73 10-36 (196)
380 >1g8p_A Magnesium-chelatase 38 40.8 12 0.00037 17.6 1.4 27 43-72 45-71 (218)
381 >3cf0_A Transitional endoplasm 40.7 12 0.00035 17.8 1.2 32 44-81 50-81 (204)
382 >3cpj_B GTP-binding protein YP 40.6 13 0.00037 17.5 1.4 25 41-68 11-35 (223)
383 >2d7d_A Uvrabc system protein 40.6 17 0.00051 16.6 2.1 24 55-81 41-64 (311)
384 >1oyw_A RECQ helicase, ATP-dep 40.6 18 0.00054 16.4 2.2 92 55-163 49-150 (209)
385 >2zkl_A Capsular polysaccharid 40.4 24 0.0007 15.6 3.9 32 52-85 4-35 (130)
386 >2cdn_A Adenylate kinase; phos 40.4 14 0.0004 17.3 1.5 25 46-73 23-47 (201)
387 >2b0c_A Putative phosphatase; 40.4 24 0.00071 15.6 4.7 86 60-145 16-119 (129)
388 >2r62_A Cell division protease 40.3 14 0.00041 17.3 1.5 19 55-73 53-71 (184)
389 >2o2x_A Hypothetical protein; 40.3 24 0.00071 15.5 4.5 76 230-326 136-213 (218)
390 >1o51_A Hypothetical protein T 40.2 23 0.00068 15.7 2.7 28 59-86 28-55 (114)
391 >3bc1_A RAS-related protein RA 40.2 14 0.00041 17.2 1.6 25 41-68 9-33 (195)
392 >1kag_A SKI, shikimate kinase 40.0 12 0.00035 17.7 1.2 16 55-70 13-28 (173)
393 >1fzq_A ADP-ribosylation facto 39.9 22 0.00066 15.8 2.6 29 36-67 9-37 (181)
394 >3c3w_A Two component transcri 39.9 16 0.00047 16.8 1.8 44 118-161 31-84 (129)
395 >3h0k_A UPF0200 protein SSO104 39.8 15 0.00046 16.9 1.7 21 54-78 8-28 (178)
396 >1tue_A Replication protein E1 39.8 12 0.00035 17.7 1.1 32 39-73 54-85 (212)
397 >1kjq_A GART 2, phosphoribosyl 39.7 24 0.00072 15.5 3.5 20 61-80 21-40 (125)
398 >2go7_A Hydrolase, haloacid de 39.7 23 0.00067 15.7 2.6 100 54-163 11-116 (137)
399 >1n7h_A GDP-D-mannose-4,6-dehy 39.7 24 0.00072 15.5 5.8 33 52-86 32-64 (381)
400 >2erx_A GTP-binding protein DI 39.6 12 0.00037 17.6 1.2 22 44-68 4-25 (172)
401 >2qjw_A Uncharacterized protei 39.3 19 0.00058 16.2 2.2 84 55-143 14-105 (176)
402 >2bwj_A Adenylate kinase 5; ph 39.3 15 0.00043 17.1 1.5 25 45-72 14-38 (199)
403 >2atv_A RERG, RAS-like estroge 39.2 18 0.00053 16.4 2.0 26 40-68 25-50 (196)
404 >3dz8_A RAS-related protein RA 39.2 21 0.00062 16.0 2.3 35 40-77 20-54 (191)
405 >2a35_A Hypothetical protein P 39.2 25 0.00073 15.4 2.7 34 52-87 9-42 (215)
406 >2iyv_A Shikimate kinase, SK; 39.1 15 0.00043 17.1 1.5 23 46-71 5-27 (169)
407 >3ipo_A Putative thiosulfate s 38.9 16 0.00047 16.8 1.7 34 115-148 78-115 (118)
408 >2vli_A Antibiotic resistance 38.7 14 0.0004 17.3 1.3 26 46-74 8-33 (183)
409 >1fx0_A ATP synthase alpha cha 38.7 23 0.00069 15.6 2.5 99 50-157 73-184 (277)
410 >2r6h_A NADH:ubiquinone oxidor 38.6 25 0.00075 15.4 2.7 37 43-83 5-42 (139)
411 >3lnc_A Guanylate kinase, GMP 38.6 12 0.00037 17.6 1.1 34 43-80 26-59 (166)
412 >1e6c_A Shikimate kinase; phos 38.5 15 0.00045 16.9 1.5 18 55-72 11-28 (173)
413 >1u7z_A Coenzyme A biosynthesi 38.3 26 0.00076 15.3 3.8 38 45-87 24-61 (226)
414 >3fdi_A Uncharacterized protei 38.1 13 0.0004 17.3 1.2 36 45-82 7-42 (201)
415 >2jg6_A DNA-3-methyladenine gl 38.0 22 0.00066 15.8 2.3 19 59-77 17-35 (65)
416 >2zej_A Dardarin, leucine-rich 37.9 16 0.00047 16.8 1.6 21 44-67 3-23 (72)
417 >3fb4_A Adenylate kinase; psyc 37.9 16 0.00047 16.8 1.5 24 55-78 9-32 (169)
418 >2rhm_A Putative kinase; ZP_00 37.5 15 0.00044 17.0 1.4 27 54-80 13-39 (193)
419 >2bme_A RAB4A, RAS-related pro 37.3 16 0.00048 16.8 1.5 34 41-77 8-41 (186)
420 >3bbp_A RAB-6, RAS-related pro 37.0 18 0.00053 16.5 1.7 26 40-68 13-38 (211)
421 >1zbd_A Rabphilin-3A; G protei 37.0 13 0.00039 17.4 1.0 26 40-68 5-30 (203)
422 >1qfj_A Protein (flavin reduct 37.0 27 0.00079 15.2 3.2 36 42-81 5-40 (136)
423 >1yt8_A Thiosulfate sulfurtran 37.0 22 0.00064 15.9 2.1 36 115-150 83-122 (127)
424 >1wcw_A Uroporphyrinogen III s 36.9 15 0.00044 17.0 1.3 33 218-250 80-112 (114)
425 >2ew1_A RAS-related protein RA 36.9 16 0.00047 16.8 1.4 25 41-68 24-48 (201)
426 >2z43_A DNA repair and recombi 36.8 9.6 0.00028 18.4 0.3 27 55-81 28-54 (236)
427 >1oix_A RAS-related protein RA 36.8 17 0.00049 16.7 1.5 25 41-68 27-51 (191)
428 >1xq6_A Unknown protein; struc 36.8 27 0.0008 15.2 4.0 30 52-83 8-37 (253)
429 >2bi7_A UDP-galactopyranose mu 36.7 27 0.0008 15.2 4.0 23 61-83 13-35 (119)
430 >1qsg_A Enoyl-[acyl-carrier-pr 36.7 27 0.0008 15.2 3.7 32 52-83 13-44 (265)
431 >2wmy_A WZB, putative acid pho 36.6 16 0.00048 16.8 1.4 88 42-149 9-96 (150)
432 >1e4v_A Adenylate kinase; tran 36.6 17 0.0005 16.6 1.5 18 55-72 9-26 (214)
433 >2gjx_A Beta-hexosaminidase al 36.4 27 0.00081 15.1 5.2 30 130-159 197-227 (323)
434 >2fts_A Gephyrin; gephyrin, ne 36.3 27 0.00081 15.1 4.4 73 176-248 78-165 (174)
435 >3g7q_A Valine-pyruvate aminot 36.3 16 0.00048 16.7 1.4 24 55-78 32-56 (70)
436 >3hdg_A Uncharacterized protei 36.2 28 0.00081 15.1 3.9 26 116-141 33-58 (137)
437 >2r44_A Uncharacterized protei 36.1 8.8 0.00026 18.7 0.0 30 40-72 43-72 (226)
438 >1k66_A Phytochrome response r 36.0 26 0.00078 15.2 2.4 25 117-141 35-69 (149)
439 >1zuh_A Shikimate kinase; alph 35.8 18 0.00053 16.5 1.5 18 54-71 15-32 (168)
440 >1w7j_A Myosin VA; motor prote 35.8 22 0.00066 15.8 2.0 51 226-291 222-272 (306)
441 >1r6b_X CLPA protein; AAA+, N- 35.7 28 0.00083 15.1 3.9 25 46-73 52-76 (213)
442 >3ffh_A Histidinol-phosphate a 35.5 28 0.00083 15.0 5.9 121 56-179 7-164 (170)
443 >2hrz_A AGR_C_4963P, nucleosid 35.5 27 0.00079 15.2 2.4 31 52-84 18-48 (342)
444 >1r2q_A RAS-related protein RA 35.4 16 0.00048 16.7 1.3 23 43-68 6-28 (170)
445 >3kqn_A Serine protease/ntpase 35.3 28 0.00084 15.0 2.8 35 148-182 123-157 (242)
446 >1dbw_A Transcriptional regula 35.3 28 0.00084 15.0 4.5 26 116-141 29-54 (126)
447 >1krh_A Benzoate 1,2-dioxygena 35.1 29 0.00085 15.0 2.7 31 53-83 11-41 (133)
448 >1uz5_A MOEA protein, 402AA lo 35.1 29 0.00085 15.0 4.4 68 175-244 78-156 (168)
449 >1gwn_A RHO-related GTP-bindin 34.9 19 0.00056 16.3 1.6 25 41-68 26-50 (205)
450 >3if2_A Aminotransferase; YP_2 34.9 25 0.00075 15.4 2.2 28 49-77 35-63 (90)
451 >1qyc_A Phenylcoumaran benzyli 34.8 29 0.00085 15.0 3.8 33 52-86 8-40 (308)
452 >2zwm_A Transcriptional regula 34.8 29 0.00086 15.0 3.6 25 117-141 29-53 (130)
453 >1zd8_A GTP:AMP phosphotransfe 34.8 15 0.00045 16.9 1.1 24 46-72 10-33 (227)
454 >3gh5_A HEX1, beta-hexosaminid 34.8 29 0.00086 15.0 5.0 30 130-159 184-213 (313)
455 >1fnb_A Ferredoxin-NADP+ reduc 34.7 19 0.00055 16.3 1.5 27 43-73 7-33 (159)
456 >2bcg_Y Protein YP2, GTP-bindi 34.7 19 0.00056 16.3 1.5 25 41-68 6-30 (206)
457 >1v5w_A DMC1, meiotic recombin 34.7 12 0.00034 17.8 0.4 27 55-81 28-54 (240)
458 >2eix_A NADH-cytochrome B5 red 34.6 23 0.00069 15.6 2.0 21 53-73 12-32 (133)
459 >2c29_D Dihydroflavonol 4-redu 34.5 29 0.00086 14.9 3.9 33 52-86 9-41 (337)
460 >1tmy_A CHEY protein, TMY; che 34.5 17 0.00051 16.5 1.3 44 118-161 31-84 (120)
461 >2hi0_A Putative phosphoglycol 34.5 19 0.00055 16.3 1.5 26 60-85 24-49 (152)
462 >1tvc_A Methane monooxygenase 34.4 29 0.00087 14.9 4.4 34 44-81 5-38 (137)
463 >1ksh_A ARF-like protein 2; sm 34.4 17 0.00052 16.5 1.3 26 39-67 14-39 (186)
464 >1db3_A GDP-mannose 4,6-dehydr 34.4 29 0.00087 14.9 3.8 33 52-86 5-37 (190)
465 >1y63_A LMAJ004144AAA protein; 34.3 16 0.00047 16.8 1.1 24 46-72 13-36 (184)
466 >3fho_A ATP-dependent RNA heli 34.2 30 0.00087 14.9 3.1 20 229-248 238-257 (326)
467 >2gas_A Isoflavone reductase; 34.1 30 0.00088 14.9 3.0 33 52-86 6-38 (144)
468 >2iye_A Copper-transporting AT 34.1 30 0.00088 14.9 2.7 89 49-157 28-122 (164)
469 >2a9k_A RAS-related protein RA 34.0 21 0.00061 16.0 1.6 25 41-68 16-40 (187)
470 >1m7b_A RND3/RHOE small GTP-bi 34.0 20 0.0006 16.1 1.6 27 39-68 3-29 (184)
471 >3dxb_A Thioredoxin N-terminal 34.0 30 0.00088 14.9 4.3 34 42-75 2-35 (102)
472 >2gkg_A Response regulator hom 33.9 30 0.00088 14.9 4.0 29 116-144 31-59 (127)
473 >1sb8_A WBPP; epimerase, 4-epi 33.9 30 0.00088 14.9 4.6 33 52-86 31-63 (352)
474 >2cu2_A Putative mannose-1-pho 33.8 18 0.00053 16.5 1.3 39 42-87 24-62 (263)
475 >2qdx_A Ferredoxin reductase; 33.7 14 0.00042 17.2 0.7 34 44-81 8-41 (158)
476 >2bgi_A Ferredoxin-NADP(H) red 33.6 17 0.00051 16.5 1.2 35 43-81 8-42 (160)
477 >1y1p_A ARII, aldehyde reducta 33.5 30 0.0009 14.8 4.1 30 52-83 15-44 (342)
478 >1d1q_A Tyrosine phosphatase ( 33.5 30 0.0009 14.8 3.4 93 42-151 8-104 (161)
479 >3be4_A Adenylate kinase; mala 33.5 21 0.00061 16.0 1.5 22 46-70 8-29 (153)
480 >1lw7_A Transcriptional regula 33.3 14 0.0004 17.3 0.6 23 46-71 12-34 (204)
481 >1fdr_A Flavodoxin reductase; 33.1 22 0.00065 15.8 1.6 34 44-81 8-41 (149)
482 >1cu1_A Protein (protease/heli 33.1 31 0.00091 14.8 2.8 122 150-292 125-250 (283)
483 >3ek2_A Enoyl-(acyl-carrier-pr 33.0 31 0.00091 14.8 3.7 32 52-83 18-49 (271)
484 >2jk1_A HUPR, hydrogenase tran 33.0 22 0.00064 15.9 1.6 26 116-141 26-51 (139)
485 >2gf9_A RAS-related protein RA 33.0 21 0.00063 15.9 1.5 25 41-68 20-44 (189)
486 >2b6h_A ADP-ribosylation facto 32.8 18 0.00054 16.4 1.2 22 41-65 27-48 (192)
487 >1c1y_A RAS-related protein RA 32.8 24 0.0007 15.6 1.8 22 44-68 4-25 (167)
488 >1xhf_A DYE resistance, aerobi 32.8 31 0.00092 14.7 4.1 26 116-141 29-54 (123)
489 >1umk_A B5R, NADH-cytochrome B 32.6 22 0.00064 15.8 1.6 22 52-73 5-26 (129)
490 3cf2_A P97VCP IN COMPLEX WITH 32.5 15 0.00044 17.0 0.7 30 46-81 241-270 (806)
491 >2ged_A SR-beta, signal recogn 32.5 31 0.00093 14.7 3.5 28 38-68 43-70 (193)
492 >2v6g_A Progesterone 5-beta-re 32.4 28 0.00082 15.1 2.1 32 52-85 5-36 (364)
493 >2cnd_A NADH-dependent nitrate 32.3 23 0.00068 15.7 1.6 35 43-81 20-56 (154)
494 >3kcn_A Adenylate cyclase homo 32.3 25 0.00073 15.5 1.8 50 112-161 25-85 (151)
495 >2rex_B RHO-related GTP-bindin 32.2 26 0.00076 15.3 1.9 26 40-68 7-32 (197)
496 >2v1x_A ATP-dependent DNA heli 32.1 32 0.00094 14.7 6.2 60 220-284 30-91 (138)
497 >1ny5_A Transcriptional regula 32.1 32 0.00094 14.7 4.1 29 116-144 26-54 (139)
498 >3bor_A Human initiation facto 32.0 28 0.00084 15.0 2.1 40 120-159 135-180 (237)
499 >2z2i_A PTH, peptidyl-tRNA hyd 32.0 12 0.00036 17.6 0.2 25 161-187 98-122 (191)
500 >3jvi_A Protein tyrosine phosp 32.0 32 0.00094 14.7 3.0 48 39-91 2-52 (161)
No 1
>>1xjc_A MOBB protein homolog; structural genomics, midwest center for structural genomics, PSI, protein structure initiative, MCSG; 2.10A {Geobacillus stearothermophilus} (A:)
Probab=96.66 E-value=0.0057 Score=41.27 Aligned_cols=43 Identities=19% Similarity=0.118 Sum_probs=34.7
Q ss_pred CCEEEECCEEECCCCCCHHHHHHHHHHHHCCCCEEEEEECCCCCC
Q ss_conf 988998230007888748999999998524731598760457877
Q gi|254780401|r 44 IPVICVGGFVMGGTGKTPTALAIAKAVIDKNLKPGFLSRGYGRKS 88 (338)
Q Consensus 44 ~pVI~VGNitvGGtGKTP~v~~l~~~l~~~g~~~~ilsRGYg~~~ 88 (338)
.|||++.- .+|+|||-+...|+..|+++|++|+++.-..++..
T Consensus 4 ~~vi~i~G--~~GsGKTTll~~l~~~l~~~g~kV~vi~~D~~~~~ 46 (169)
T 1xjc_A 4 XNVWQVVG--YKHSGKTTLXEKWVAAAVREGWRVGTVKHHGHGGE 46 (169)
T ss_dssp CCEEEEEC--CTTSSHHHHHHHHHHHHHHTTCCEEEEECCC----
T ss_pred CEEEEEEC--CCCCCHHHHHHHHHHHHHHCCCCEEEECCCCCCCC
T ss_conf 65999982--99998999999999999866995157525775654
No 2
>>2www_A Methylmalonic aciduria type A protein, mitochondrial; transport protein, transit peptide, disease mutation, nucleotide-binding, ATP-binding; HET: GDP 2PE; 2.64A {Homo sapiens} (A:1-262)
Probab=96.25 E-value=0.0056 Score=41.37 Aligned_cols=147 Identities=12% Similarity=0.043 Sum_probs=77.7
Q ss_pred CCCCCCEEE-ECCEEECCCCCCHHHHHHHHHHHHCCCCEEEEEECCCCCCCCCEEEE-CC--CCCHHHHCCHHHHHHHCC
Q ss_conf 338898899-82300078887489999999985247315987604578777755871-45--678877042123322057
Q gi|254780401|r 40 LHAPIPVIC-VGGFVMGGTGKTPTALAIAKAVIDKNLKPGFLSRGYGRKSRISFRVD-LE--KHSAYDVGDEPLLLARRA 115 (338)
Q Consensus 40 ~~~~~pVI~-VGNitvGGtGKTP~v~~l~~~l~~~g~~~~ilsRGYg~~~~~~~~v~-~~--~~~~~~vGDEp~lla~~~ 115 (338)
..-+.||+. +|= -|+|||.++..|+..++.+|+++++++--.++-....-... .. ......++....++...+
T Consensus 70 ~~~~~~v~~l~G~---~GaGKTT~l~kla~~l~~~~~kv~vi~~D~~r~~~~~ql~~~~~~~~~~~~~~~~~~~~~~~~~ 146 (262)
T 2www_A 70 GKPLAFRVGLSGP---PGAGKSTFIEYFGKMLTERGHKLSVLAVDPSSCTSGGSLLGDKTRMTELSRDMNAYIRPSPTRG 146 (262)
T ss_dssp TCCSCEEEEEECC---TTSSHHHHHHHHHHHHHHTTCCEEEEECCC----------------CCSTTCTTEEEECC----
T ss_pred CCCCCEEEEEECC---CCCCHHHHHHHHHHHHHHCCCEEEEEECCCCCCCCHHHCCCCCCHHHHHHHCCCHHCCCCHHHH
T ss_conf 8887217863079---9888999999999999858972889855898753143361102117765302221035671555
Q ss_pred CCCC-CCCHHHHHHHHCCCCCCEEEECCC--C---CCCCCCCEEEEEEECCCCCCCCCCCCCCHHHHHCCHHHHHHHHHH
Q ss_conf 6346-520122566410245747997183--2---234412306999961843356655376136521002556651454
Q gi|254780401|r 116 VTIV-TSDRKIGVQMLLQEGVDIIIMDDG--F---HSADLQADFSLIVVNSHRGLGNGLVFPAGPLRVPLSRQLSYVDAI 189 (338)
Q Consensus 116 pv~V-~~~R~~~~~~~~~~~~diiIlDDG--f---Qh~~l~rdl~Ivl~d~~~~~gn~~llPaGpLREp~~~~l~rad~v 189 (338)
.-.- ...=..++..+...+.|.++.+-. + .+.....+.-++++|+..+---. ++ ....++.+|.+
T Consensus 147 ~~~~~~~~~~d~i~~~~~~~~d~~~ie~~g~~~~~~~~~~~~~~~~~v~~~~~~~~~~--------~~-~~~~~~~ad~i 217 (262)
T 2www_A 147 TLGGVTRTTNEAILLCEGAGYDIILIETVGVGQSEFAVADMVDMFVLLLPPAGGDELQ--------GI-KRGIIEMADLV 217 (262)
T ss_dssp -----CTTHHHHHHHHHHTTCSEEEEECCCC--CHHHHHTTCSEEEEEECCC---------------------CCSCSEE
T ss_pred HHCCCCHHHHHHHHHHHHCCCCEEEEEECCHHCCCCHHHCCCCEEEEEECCCCCHHHH--------HH-HHHHHHHCEEE
T ss_conf 4212103169999998645999689862210012311313663468884488622478--------88-77698646079
Q ss_pred HHCCCCHHH
Q ss_conf 420441245
Q gi|254780401|r 190 LYVGNKKNV 198 (338)
Q Consensus 190 i~~~~~~~~ 198 (338)
|+||.+...
T Consensus 218 iitK~D~~~ 226 (262)
T 2www_A 218 AVTKSDGDL 226 (262)
T ss_dssp EECCCSGGG
T ss_pred EEECCCCCC
T ss_conf 997655530
No 3
>>2px0_A Flagellar biosynthesis protein FLHF; SRP GTPase, flagellum, protein transport, biosynthetic protein; HET: GNP; 3.00A {Bacillus subtilis} PDB: 2px3_A* (A:99-285)
Probab=96.03 E-value=0.024 Score=36.89 Aligned_cols=79 Identities=24% Similarity=0.228 Sum_probs=47.8
Q ss_pred EEEECCEEECCCCCCHHHHHHHHHHHHC-CCCEEEEEECCCCCCCCCEEEECCCCCHHHHCCHHHH-HHH--CCCCCCCC
Q ss_conf 8998230007888748999999998524-7315987604578777755871456788770421233-220--57634652
Q gi|254780401|r 46 VICVGGFVMGGTGKTPTALAIAKAVIDK-NLKPGFLSRGYGRKSRISFRVDLEKHSAYDVGDEPLL-LAR--RAVTIVTS 121 (338)
Q Consensus 46 VI~VGNitvGGtGKTP~v~~l~~~l~~~-g~~~~ilsRGYg~~~~~~~~v~~~~~~~~~vGDEp~l-la~--~~pv~V~~ 121 (338)
+..+|+ +|+|||-++.-||.+++.+ |+++++++= |+..+.+ .|.+- .+. ..++.+..
T Consensus 10 i~l~G~---~GvGKTT~a~~LA~~~~~~~g~~v~li~~------------D~~~~~~----~~~l~~~~~~~~~~~~~~~ 70 (187)
T 2px0_A 10 IVLFGS---TGAGKTTTLAKLAAISMLEKHKKIAFITT------------DTYRIAA----VEQLKTYAELLQAPLEVCY 70 (187)
T ss_dssp EEEEES---TTSSHHHHHHHHHHHHHHTTCCCEEEEEC------------CCSSTTH----HHHHHHHHTTTTCCCCBCS
T ss_pred EEEECC---CCCCHHHHHHHHHHHHHHHCCCCCEEECC------------CCCCHHH----HHHHHHHHHHCCCCCHHHC
T ss_conf 999736---66326669999999998742234412037------------7564779----9999999865122312221
Q ss_pred CHHHHHHHHC-CCCCCEEEECCC
Q ss_conf 0122566410-245747997183
Q gi|254780401|r 122 DRKIGVQMLL-QEGVDIIIMDDG 143 (338)
Q Consensus 122 ~R~~~~~~~~-~~~~diiIlDDG 143 (338)
+-......+. ..+.|+||.|-.
T Consensus 71 ~~~~~~~~~~~~~~~d~ViIDt~ 93 (187)
T 2px0_A 71 TKEEFQQAKELFSEYDHVFVDTA 93 (187)
T ss_dssp SHHHHHHHHHHGGGSSEEEEECC
T ss_pred CHHHHHHHHHHHCCCEEEEEECC
T ss_conf 44689999984054328998336
No 4
>>1np6_A Molybdopterin-guanine dinucleotide biosynthesis protein B; mixed alpha-beta fold, elongated beta-sheet, walker A motif, P-loop structural motif; 1.90A {Escherichia coli} (A:)
Probab=95.96 E-value=0.025 Score=36.69 Aligned_cols=43 Identities=23% Similarity=0.468 Sum_probs=33.1
Q ss_pred CCCCCEEEECCEEECCCCCCHHHHHHHHHHHHCCCCEEEEEECCC
Q ss_conf 388988998230007888748999999998524731598760457
Q gi|254780401|r 41 HAPIPVICVGGFVMGGTGKTPTALAIAKAVIDKNLKPGFLSRGYG 85 (338)
Q Consensus 41 ~~~~pVI~VGNitvGGtGKTP~v~~l~~~l~~~g~~~~ilsRGYg 85 (338)
+-+.|||.|.- -.|+|||-+...|+++|+++|++++++.---+
T Consensus 3 ~~~~~vi~i~G--~~GsGKTTll~~L~~~l~~~g~kv~~i~~d~~ 45 (174)
T 1np6_A 3 KTMIPLLAFAA--WSGTGKTTLLKKLIPALCARGIRPGLIKHTHH 45 (174)
T ss_dssp --CCCEEEEEC--CTTSCHHHHHHHHHHHHHHTTCCEEEEEECCC
T ss_pred CEEEEEEEEEE--CCCCCHHHHHHHHHHHHHHCCCEEEEEEECCC
T ss_conf 62610799992--59998999999999999977984889982588
No 5
>>1ihu_A Arsenical pump-driving ATPase; aluminum fluoride, ADP, ARSA ATPase, ATP binding site, hydrolase; HET: ADP; 2.15A {Escherichia coli} (A:1-303)
Probab=95.67 E-value=0.013 Score=38.85 Aligned_cols=44 Identities=23% Similarity=0.185 Sum_probs=37.4
Q ss_pred CCCEEEECCEEECCCCCCHHHHHHHHHHHHCCCCEEEEEECCCCC
Q ss_conf 898899823000788874899999999852473159876045787
Q gi|254780401|r 43 PIPVICVGGFVMGGTGKTPTALAIAKAVIDKNLKPGFLSRGYGRK 87 (338)
Q Consensus 43 ~~pVI~VGNitvGGtGKTP~v~~l~~~l~~~g~~~~ilsRGYg~~ 87 (338)
+.+||+|.|. -||+|||.++.-||..|.++|++|.++.--..+.
T Consensus 6 ~~~vi~v~s~-KGGvGKTT~a~~LA~~la~~G~rVlliD~D~~~~ 49 (303)
T 1ihu_A 6 NIPPYLFFTG-KGGVGKTSISCATAIRLAEQGKRVLLVSTDPASN 49 (303)
T ss_dssp SCCSEEEEEC-STTSSHHHHHHHHHHHHHHTTCCEEEEECCTTCC
T ss_pred CCCEEEEEEC-CCCCHHHHHHHHHHHHHHHCCCCEEEEECCCCCC
T ss_conf 9983899988-9705799999999999997899899996789998
No 6
>>1yrb_A ATP(GTP)binding protein; GTPase, P-loop, rossman fold, GDP, hydrolase; HET: GDP; 1.75A {Pyrococcus abyssi} (A:)
Probab=95.56 E-value=0.014 Score=38.60 Aligned_cols=154 Identities=8% Similarity=-0.074 Sum_probs=77.7
Q ss_pred CCCCCEEEECCEEECCCCCCHHHHHHHHHHHHCCCCEEEEEECCCCCCCCCEEEECCCCCHHHHCCHHHHHHHCCCCCCC
Q ss_conf 38898899823000788874899999999852473159876045787777558714567887704212332205763465
Q gi|254780401|r 41 HAPIPVICVGGFVMGGTGKTPTALAIAKAVIDKNLKPGFLSRGYGRKSRISFRVDLEKHSAYDVGDEPLLLARRAVTIVT 120 (338)
Q Consensus 41 ~~~~pVI~VGNitvGGtGKTP~v~~l~~~l~~~g~~~~ilsRGYg~~~~~~~~v~~~~~~~~~vGDEp~lla~~~pv~V~ 120 (338)
..+.|+|+|. =-.|+|||-++..|+..+...+....+.-++.....................+.+.......+.....
T Consensus 11 ~~~~~~i~i~--G~~gaGKTTl~~~Ll~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~ 88 (262)
T 1yrb_A 11 GMASMIVVFV--GTAGSGKTTLTGEFGRYLEDNYKVAYVNLDTGVKELPYEPSIDVREFVTVEEIMREGYGPNGAIVESY 88 (262)
T ss_dssp TCCCEEEEEE--CSTTSSHHHHHHHHHHHHTTTSCEEEEECCSSCSCCSSCCSEEGGGTCCHHHHHTTTCCHHHHHHHHH
T ss_pred CCCCCEEEEE--ECCCCHHHHHHHHHHHHHHCCCEEEEEECCCCCCCCCCCCCCCHHHHHHHCCCCHHHEECCCCEEEEH
T ss_conf 8889889999--38998399999999998700988999964777536787734137777641100244310368713002
Q ss_pred CCHHH------HHHHHCCCCCCEEEECCCC-------------CCCCCCCEEEEEEECCCCCCCCCCCCCCHHHHHCCHH
Q ss_conf 20122------5664102457479971832-------------2344123069999618433566553761365210025
Q gi|254780401|r 121 SDRKI------GVQMLLQEGVDIIIMDDGF-------------HSADLQADFSLIVVNSHRGLGNGLVFPAGPLRVPLSR 181 (338)
Q Consensus 121 ~~R~~------~~~~~~~~~~diiIlDDGf-------------Qh~~l~rdl~Ivl~d~~~~~gn~~llPaGpLREp~~~ 181 (338)
..... +.......+.|+++.|--= ....+..+.-|+++|+.++---....+.+..++-...
T Consensus 89 ~~~~~~~~~~~~~~~~~~~~~~~~iid~pG~~~~~~~~~~~~~~~~~~~~~~~i~vvDa~~~~~~~~~~~~~~~~~~~~~ 168 (262)
T 1yrb_A 89 DRLMEKFNEYLNKILRLEKENDYVLIDTPGQMETFLFHEFGVRLMENLPYPLVVYISDPEILKKPNDYCFVRFFALLIDL 168 (262)
T ss_dssp HHHHTTHHHHHHHHHHHHHHCSEEEEECCSSHHHHHHSHHHHHHHHTSSSCEEEEEECGGGCCSHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHCCCCCEEECCCCCHHHHHHHHHHHHHHHHHHCCCEEEEEECCCCCCCCHHHHHHHHHHHHHHH
T ss_conf 76888899999999863167642303543204578999988899887436559998436545672378889999999887
Q ss_pred HHHHHHHHHHCCCCH
Q ss_conf 566514544204412
Q gi|254780401|r 182 QLSYVDAILYVGNKK 196 (338)
Q Consensus 182 ~l~rad~vi~~~~~~ 196 (338)
.++-++++++||.+.
T Consensus 169 ~i~~~~iiviNK~D~ 183 (262)
T 1yrb_A 169 RLGATTIPALNKVDL 183 (262)
T ss_dssp HHTSCEEEEECCGGG
T ss_pred HCCCCCEEEECCCCC
T ss_conf 537980577616554
No 7
>>1vma_A Cell division protein FTSY; TM0570, structural genomics, JCSG, protein structure initiative, PSI, joint center for structural genomics; HET: CIT; 1.60A {Thermotoga maritima} (A:)
Probab=95.51 E-value=0.025 Score=36.77 Aligned_cols=79 Identities=25% Similarity=0.334 Sum_probs=49.3
Q ss_pred EEEECCEEECCCCCCHHHHHHHHHHHHCCCCEEEEEECCCCCCCCCEEEECCCCCHHHHCCHHHHH-HH--CCCCCCCCC
Q ss_conf 899823000788874899999999852473159876045787777558714567887704212332-20--576346520
Q gi|254780401|r 46 VICVGGFVMGGTGKTPTALAIAKAVIDKNLKPGFLSRGYGRKSRISFRVDLEKHSAYDVGDEPLLL-AR--RAVTIVTSD 122 (338)
Q Consensus 46 VI~VGNitvGGtGKTP~v~~l~~~l~~~g~~~~ilsRGYg~~~~~~~~v~~~~~~~~~vGDEp~ll-a~--~~pv~V~~~ 122 (338)
|..|| .-|.|||-++.-||.+|.++|++|++++= |+.. -.+=|.+.. ++ ..|+.+..+
T Consensus 107 i~~vG---ptGvGKTTTiaKlA~~~~~~g~kv~lit~------------Dt~R----~ga~eQL~~~a~~~~vp~~~~~~ 167 (306)
T 1vma_A 107 IMVVG---VNGTGKTTSCGKLAKMFVDEGKSVVLAAA------------DTFR----AAAIEQLKIWGERVGATVISHSE 167 (306)
T ss_dssp EEEEC---CTTSSHHHHHHHHHHHHHHTTCCEEEEEE------------CTTC----HHHHHHHHHHHHHHTCEEECCST
T ss_pred EEECC---CCCCCCCHHHHHHHHHHHHCCCEEEEEEC------------CCCC----CHHHHHHHHHHHHCCCCCCCCCC
T ss_conf 87415---55667641699999999857984799833------------6533----10577888887514754215677
Q ss_pred HHH---HH----HHHCCCCCCEEEECCC
Q ss_conf 122---56----6410245747997183
Q gi|254780401|r 123 RKI---GV----QMLLQEGVDIIIMDDG 143 (338)
Q Consensus 123 R~~---~~----~~~~~~~~diiIlDDG 143 (338)
... ++ +.+...++|+|+.|=.
T Consensus 168 ~~~~~~~~~~~i~~~~~~~~d~VlIDTa 195 (306)
T 1vma_A 168 GADPAAVAFDAVAHALARNKDVVIIDTA 195 (306)
T ss_dssp TCCHHHHHHHHHHHHHHTTCSEEEEEEC
T ss_pred CCCHHHHHHHHHHHHHHCCCCEEEEECH
T ss_conf 8668988899999999869997998541
No 8
>>1nij_A Hypothetical protein YJIA; structural genomics, P-loop protein, GTP binding, structure 2 function project, S2F, unknown function; 2.00A {Escherichia coli} (A:1-204)
Probab=95.31 E-value=0.0053 Score=41.53 Aligned_cols=137 Identities=18% Similarity=0.175 Sum_probs=71.9
Q ss_pred CCCEEEECCEEECCCCCCHHHHHHHHHHHHCCCCEEEEEECCCCCCCCCEEEECCCCCHHHHCCHHHHHHHCCCCC-CCC
Q ss_conf 8988998230007888748999999998524731598760457877775587145678877042123322057634-652
Q gi|254780401|r 43 PIPVICVGGFVMGGTGKTPTALAIAKAVIDKNLKPGFLSRGYGRKSRISFRVDLEKHSAYDVGDEPLLLARRAVTI-VTS 121 (338)
Q Consensus 43 ~~pVI~VGNitvGGtGKTP~v~~l~~~l~~~g~~~~ilsRGYg~~~~~~~~v~~~~~~~~~vGDEp~lla~~~pv~-V~~ 121 (338)
++||+.|+-. -|+|||.+...|+++++ |.+++++.-..++..-..-... +.+.+-..+...+.-. ...
T Consensus 3 k~~v~~v~Gf--lGsGKTTll~~l~~~~~--~~k~~vi~~d~~~~~~d~~l~~-------~~~~~~~~~~~g~~~~~~~~ 71 (204)
T 1nij_A 3 PIAVTLLTGF--LGAGKTTLLRHILNEQH--GYKIAVIENEFGEVSVDDQLIG-------DRATQIKTLTNGCICCSRSN 71 (204)
T ss_dssp CEEEEEEEES--SSSSCHHHHHHHHHSCC--CCCEEEECSSCCSCCEEEEEEC-------TTSCEEEEETTSCEEECTTS
T ss_pred CCCEEEEEEC--CCCCHHHHHHHHHHCCC--CCCEEEEECCCCCCHHHHHHHH-------CCCCEEEEECCCCEEECCCH
T ss_conf 6578999718--78999999999983778--9968999778875200399983-------78952998628831411525
Q ss_pred CHHHHHHH------HCCCCCCEEEEC-CCC---------------CCCCCCCEEEEEEECCCCCCCCCCCCCCHHHHHCC
Q ss_conf 01225664------102457479971-832---------------23441230699996184335665537613652100
Q gi|254780401|r 122 DRKIGVQM------LLQEGVDIIIMD-DGF---------------HSADLQADFSLIVVNSHRGLGNGLVFPAGPLRVPL 179 (338)
Q Consensus 122 ~R~~~~~~------~~~~~~diiIlD-DGf---------------Qh~~l~rdl~Ivl~d~~~~~gn~~llPaGpLREp~ 179 (338)
+-..+.+. +...++|.|+.| .|. .+.....+.-++++|+..+- ..+--.+.+++
T Consensus 72 ~~~~~l~~~~~~~~a~~~~~d~ilie~~G~~~~~~~~~~~l~~~~~~~~~~~~~vi~vvda~~~~--~~~~~~~~~~~-- 147 (204)
T 1nij_A 72 ELEDALLDLLDNLDKGNIQFDRLVIECTGMADPGPIIQTFFSHEVLCQRYLLDGVIALVDAVHAD--EQMNQFTIAQS-- 147 (204)
T ss_dssp CHHHHHHHHHHHHHHTSCCCSEEEEEEETTCCHHHHHHHHHHSHHHHHHEEEEEEEEEEETTTHH--HHHHHCHHHHH--
T ss_pred HHHHHHHHHHHHHHHCCCCCCEEEEECCCCCCHHHHHHHHHHHHHHCCEEEECCEEEECHHHHHH--HHHHHHHHHHH--
T ss_conf 68999999999986167777669995167668699999986666424638865477831477788--86423255654--
Q ss_pred HHHHHHHHHHHHCCCCH
Q ss_conf 25566514544204412
Q gi|254780401|r 180 SRQLSYVDAILYVGNKK 196 (338)
Q Consensus 180 ~~~l~rad~vi~~~~~~ 196 (338)
.+.-||.+|+|+.+.
T Consensus 148 --q~~~ad~viitK~D~ 162 (204)
T 1nij_A 148 --QVGYADRILLTKTDV 162 (204)
T ss_dssp --HHHTCSEEEEECTTT
T ss_pred --HHCCCCEEEECCCCC
T ss_conf --303477466301101
No 9
>>1hyq_A MIND, cell division inhibitor (MIND-1); MINC, FTSZ, bacterial cell division, cell cycle; 2.60A {Archaeoglobus fulgidus} (A:)
Probab=95.28 E-value=0.02 Score=37.42 Aligned_cols=39 Identities=23% Similarity=0.249 Sum_probs=33.4
Q ss_pred CEEEECCEEECCCCCCHHHHHHHHHHHHCCCCEEEEEECC
Q ss_conf 8899823000788874899999999852473159876045
Q gi|254780401|r 45 PVICVGGFVMGGTGKTPTALAIAKAVIDKNLKPGFLSRGY 84 (338)
Q Consensus 45 pVI~VGNitvGGtGKTP~v~~l~~~l~~~g~~~~ilsRGY 84 (338)
.||+|.|. =||+|||-++.-||-.|.++|++++++-=--
T Consensus 3 kvI~v~s~-KGGvGKTT~a~nlA~~La~~g~kvlliD~D~ 41 (263)
T 1hyq_A 3 RTITVASG-KGGTGKTTITANLGVALAQLGHDVTIVDADI 41 (263)
T ss_dssp EEEEEEES-SSCSCHHHHHHHHHHHHHHTTCCEEEEECCC
T ss_pred EEEEEECC-CCCCHHHHHHHHHHHHHHHCCCCEEEEECCC
T ss_conf 59999899-9988599999999999996899899996889
No 10
>>3c8u_A Fructokinase; YP_612366.1, putative fructose transport system kinase, structural genomics, joint center for structural genomics, JCSG; 1.95A {Silicibacter SP} (A:1-61,A:124-208)
Probab=95.18 E-value=0.03 Score=36.21 Aligned_cols=34 Identities=18% Similarity=0.290 Sum_probs=29.5
Q ss_pred EEEECCEEECCCCCCHHHHHHHHHHHHCCCCEEEEE
Q ss_conf 899823000788874899999999852473159876
Q gi|254780401|r 46 VICVGGFVMGGTGKTPTALAIAKAVIDKNLKPGFLS 81 (338)
Q Consensus 46 VI~VGNitvGGtGKTP~v~~l~~~l~~~g~~~~ils 81 (338)
||.| .=.+|+|||-++..|+..|+++|.+|+++|
T Consensus 24 vI~i--~G~~GsGKTT~~~~La~~l~~~G~~v~~~~ 57 (146)
T 3c8u_A 24 LVAL--SGAPGSGKSTLSNPLAAALSAQGLPAEVVP 57 (146)
T ss_dssp EEEE--ECCTTSCTHHHHHHHHHHHHHTTCCEEEEE
T ss_pred EEEE--ECCCCCCHHHHHHHHHHHHHHCCCCCEEEC
T ss_conf 9998--898999899999999999602145540312
No 11
>>3fgn_A Dethiobiotin synthetase; biotin biosynthesis, BIOD, ATP- binding, ligase, magnesium, nucleotide-binding; 1.85A {Mycobacterium tuberculosis} PDB: 3fmf_A* 3fmi_A* 3fpa_A* (A:)
Probab=95.02 E-value=0.03 Score=36.16 Aligned_cols=42 Identities=21% Similarity=0.302 Sum_probs=35.7
Q ss_pred CCCCCCCEEEECCEEECCCCCCHHHHHHHHHHHHCCCCEEEEE
Q ss_conf 4338898899823000788874899999999852473159876
Q gi|254780401|r 39 RLHAPIPVICVGGFVMGGTGKTPTALAIAKAVIDKNLKPGFLS 81 (338)
Q Consensus 39 ~~~~~~pVI~VGNitvGGtGKTP~v~~l~~~l~~~g~~~~ils 81 (338)
...-+.+||.|.+. -||+|||-++..||..|.++|++++++-
T Consensus 21 ~~~~~~kvI~v~s~-kGGvGKTtia~~LA~~la~~g~~vl~id 62 (251)
T 3fgn_A 21 YFQSHMTILVVTGT-GTGVGKTVVCAALASAARQAGIDVAVCK 62 (251)
T ss_dssp -CCSSCEEEEEEES-STTSCHHHHHHHHHHHHHHTTCCEEEEE
T ss_pred HHHCCCCEEEEEEC-CCCCHHHHHHHHHHHHHHHCCCEEEEEC
T ss_conf 35405986899869-9996199999999999996899499977
No 12
>>3cwq_A Para family chromosome partitioning protein; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; HET: ADP; 2.47A {Synechocystis SP} (A:)
Probab=94.98 E-value=0.027 Score=36.44 Aligned_cols=36 Identities=28% Similarity=0.337 Sum_probs=32.1
Q ss_pred CEEEECCEEECCCCCCHHHHHHHHHHHHCCCCEEEEE
Q ss_conf 8899823000788874899999999852473159876
Q gi|254780401|r 45 PVICVGGFVMGGTGKTPTALAIAKAVIDKNLKPGFLS 81 (338)
Q Consensus 45 pVI~VGNitvGGtGKTP~v~~l~~~l~~~g~~~~ils 81 (338)
.||+|.|- =||.|||-++..||-.|..+|+++.++-
T Consensus 1 ~II~v~n~-KGGVGKTT~a~nLA~~la~~G~~vl~id 36 (209)
T 3cwq_A 1 XIITVASF-KGGVGKTTTAVHLSAYLALQGETLLIDG 36 (209)
T ss_dssp CEEEEEES-STTSSHHHHHHHHHHHHHTTSCEEEEEE
T ss_pred CEEEEECC-CCCHHHHHHHHHHHHHHHHCCCEEEEEC
T ss_conf 98999879-9971799999999999997899899968
No 13
>>1qzx_A SRP54, signal recognition 54 kDa protein; signal recognition particle, protein targeting, signaling protein; 4.00A {Sulfolobus solfataricus} (A:98-290)
Probab=94.90 E-value=0.027 Score=36.48 Aligned_cols=82 Identities=23% Similarity=0.220 Sum_probs=48.7
Q ss_pred CCEEEECCEEECCCCCCHHHHHHHHHHHHCCCCEEEEEECCCCCCCCCEEEECCCCCHHHHC-CHHHHHHHC------CC
Q ss_conf 98899823000788874899999999852473159876045787777558714567887704-212332205------76
Q gi|254780401|r 44 IPVICVGGFVMGGTGKTPTALAIAKAVIDKNLKPGFLSRGYGRKSRISFRVDLEKHSAYDVG-DEPLLLARR------AV 116 (338)
Q Consensus 44 ~pVI~VGNitvGGtGKTP~v~~l~~~l~~~g~~~~ilsRGYg~~~~~~~~v~~~~~~~~~vG-DEp~lla~~------~p 116 (338)
.+||.+.- .+|+|||-++..|+.+|+++|+++++++---++ .| |+-+..... .+
T Consensus 7 ~~vi~itG--~~GsGKTT~~~~L~~~l~~~g~~v~~i~~D~~~-----------------~~~~~~l~~~~~~~~~~~~~ 67 (193)
T 1qzx_A 7 PFIIMLVG--VQGSGKTTTAGKLAYFYKKRGYKVGLVAADVYR-----------------PAAYDQLLQLGNQIGVQVYG 67 (193)
T ss_dssp SEEEEEEC--SSSSSTTTHHHHHHHHHHHTTCCEEEEECCTTS-----------------THHHHHHHHHHHHTTCEEEC
T ss_pred CEEEEEEC--CCCCCCCCHHHHHHHHHHHCCCCEEEEECCCCC-----------------CCHHHHHHHHHCCCCEEEEC
T ss_conf 85999975--778884204999999998659830477426557-----------------54788899997037714731
Q ss_pred CCCCCCHHHHHH----HHCCCCCCEEEECCCC
Q ss_conf 346520122566----4102457479971832
Q gi|254780401|r 117 TIVTSDRKIGVQ----MLLQEGVDIIIMDDGF 144 (338)
Q Consensus 117 v~V~~~R~~~~~----~~~~~~~diiIlDDGf 144 (338)
...+.++....+ .+.....|+++.|-..
T Consensus 68 ~~~~~~~~~~~~~~~~~~~~~~~d~v~~~t~g 99 (193)
T 1qzx_A 68 EPNNQNPIEIAKKGVDIFVKNKMDIIIVDTAG 99 (193)
T ss_dssp CTTCCCHHHHHHHHHHHHHHTTCSEEEEECCC
T ss_pred CCCCCCHHHHHHHHHHHHHHCCCCEEEEECCC
T ss_conf 55556778899999998751489889987777
No 14
>>2f1r_A Molybdopterin-guanine dinucleotide biosynthesis protein B (MOBB); structural genomics, PSI, protein structure initiative; 2.10A {Archaeoglobus fulgidus} (A:1-44,A:95-171)
Probab=94.80 E-value=0.025 Score=36.77 Aligned_cols=31 Identities=16% Similarity=0.247 Sum_probs=28.3
Q ss_pred EECCCCCCHHHHHHHHHHHHCCCCEEEEEEC
Q ss_conf 0078887489999999985247315987604
Q gi|254780401|r 53 VMGGTGKTPTALAIAKAVIDKNLKPGFLSRG 83 (338)
Q Consensus 53 tvGGtGKTP~v~~l~~~l~~~g~~~~ilsRG 83 (338)
-..|+|||-++..|+++|+++|+++++++.-
T Consensus 9 G~~G~GKTT~~~~l~~~l~~~g~~v~vi~~D 39 (121)
T 2f1r_A 9 GTSDSGKTTLITRMMPILRERGLRVAVVKRH 39 (121)
T ss_dssp ESCHHHHHHHHHHHHHHHHHTTCCEEEEEC-
T ss_pred CCCCCCHHHHHHHHHHHHCCCCCEEEEECEE
T ss_conf 8899539999999983418788689990664
No 15
>>1odf_A YGR205W, hypothetical 33.3 kDa protein in ADE3-Ser2 intergenic region; yeast protein, ATP binding protein; 2.25A {Saccharomyces cerevisiae} (A:1-73,A:153-290)
Probab=94.77 E-value=0.11 Score=32.26 Aligned_cols=34 Identities=24% Similarity=0.249 Sum_probs=28.6
Q ss_pred EECCEEECCCCCCHHHHHHHHHHHHC---CCCEEEEE
Q ss_conf 98230007888748999999998524---73159876
Q gi|254780401|r 48 CVGGFVMGGTGKTPTALAIAKAVIDK---NLKPGFLS 81 (338)
Q Consensus 48 ~VGNitvGGtGKTP~v~~l~~~l~~~---g~~~~ils 81 (338)
.||=.=.-|||||-++..|+++|+++ |++++++|
T Consensus 33 vigi~G~QGsGKTT~~~~L~~~L~~~~~~~lkv~~~S 69 (211)
T 1odf_A 33 FIFFSGPQGSGKSFTSIQIYNHLMEKYGGEKSIGYAS 69 (211)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHHHHHHGGGSCEEEEE
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHHHCCCCCEEEEEC
T ss_conf 9983789878899999999999997507887079953
No 16
>>2oze_A ORF delta'; para, walker type atpases, DNA segregation, PSM19035, plasmid, DNA binding protein; HET: AGS EPE; 1.83A {Streptococcus pyogenes} (A:)
Probab=94.76 E-value=0.023 Score=36.93 Aligned_cols=40 Identities=28% Similarity=0.254 Sum_probs=33.5
Q ss_pred CCCCEEEECCEEECCCCCCHHHHHHHHHHHHCCCCEEEEEE
Q ss_conf 88988998230007888748999999998524731598760
Q gi|254780401|r 42 APIPVICVGGFVMGGTGKTPTALAIAKAVIDKNLKPGFLSR 82 (338)
Q Consensus 42 ~~~pVI~VGNitvGGtGKTP~v~~l~~~l~~~g~~~~ilsR 82 (338)
-.-.||+|-|. -||+|||.++.-||..|.++|++++++.-
T Consensus 34 ~~~~iI~v~s~-KGGvGKTTia~~lA~~LA~~g~~Vllid~ 73 (298)
T 2oze_A 34 NEAIVILNNYF-KGGVGKSKLSTMFAYLTDKLNLKVLMIDK 73 (298)
T ss_dssp CSCEEEEECCS-SSSSSHHHHHHHHHHHHHHTTCCEEEEEE
T ss_pred CCEEEEEECCC-CCCCCHHHHHHHHHHHHHHCCCCEEEECC
T ss_conf 84499995889-88826999999999999976998389706
No 17
>>2npi_A Protein CLP1; CLP1-PCF11 complex, ATP binding, ternary complex, transcription; HET: ATP; 2.95A {Saccharomyces cerevisiae} (A:118-328)
Probab=94.69 E-value=0.05 Score=34.62 Aligned_cols=42 Identities=21% Similarity=0.270 Sum_probs=32.2
Q ss_pred CCCCCEEEECCEEECCCCCCHHHHHHHHH-HHHCCCCEEEEEECCC
Q ss_conf 38898899823000788874899999999-8524731598760457
Q gi|254780401|r 41 HAPIPVICVGGFVMGGTGKTPTALAIAKA-VIDKNLKPGFLSRGYG 85 (338)
Q Consensus 41 ~~~~pVI~VGNitvGGtGKTP~v~~l~~~-l~~~g~~~~ilsRGYg 85 (338)
+.+.-|+.+|. ||+|||-++..|+++ |++.|++|.++-==-+
T Consensus 19 ~~~~~ilv~G~---gGvGKTT~~~~La~~~l~~~g~~vl~vD~D~~ 61 (211)
T 2npi_A 19 FEGPRVVIVGG---SQTGKTSLSRTLCSYALKFNAYQPLYINLDPQ 61 (211)
T ss_dssp SSCCCEEEEES---TTSSHHHHHHHHHHTTHHHHCCCCEEEECCTT
T ss_pred CCCCEEEEECC---CCCCHHHHHHHHHHHHHHCCCCCEEEEECCCC
T ss_conf 25988999899---98788999999999998506982399976789
No 18
>>2ph1_A Nucleotide-binding protein; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; 2.70A {Archaeoglobus fulgidus dsm 4304} (A:1-228)
Probab=94.58 E-value=0.033 Score=35.88 Aligned_cols=45 Identities=27% Similarity=0.324 Sum_probs=37.3
Q ss_pred CCCCCCCEEEECCEEECCCCCCHHHHHHHHHHHHCCCCEEEEEECC
Q ss_conf 4338898899823000788874899999999852473159876045
Q gi|254780401|r 39 RLHAPIPVICVGGFVMGGTGKTPTALAIAKAVIDKNLKPGFLSRGY 84 (338)
Q Consensus 39 ~~~~~~pVI~VGNitvGGtGKTP~v~~l~~~l~~~g~~~~ilsRGY 84 (338)
.-.-+..||.|.|. -||.|||-++..||..|.++|++|.++---.
T Consensus 13 ~~~~~~kvi~v~s~-kGGvGKTT~a~~LA~~la~~G~~VlliD~D~ 57 (228)
T 2ph1_A 13 RLGKIKSRIAVXSG-KGGVGKSTVTALLAVHYARQGKKVGILDADF 57 (228)
T ss_dssp HHTTCSCEEEEECS-SSCTTHHHHHHHHHHHHHHTTCCEEEEECCS
T ss_pred HHCCCCEEEEEECC-CCCCCHHHHHHHHHHHHHHCCCEEEEECCCC
T ss_conf 75078869999769-9988799999999999997799177518988
No 19
>>1j8m_F SRP54, signal recognition 54 kDa protein; signaling protein; 2.00A {Acidianus ambivalens} (F:92-284)
Probab=94.57 E-value=0.042 Score=35.15 Aligned_cols=28 Identities=39% Similarity=0.455 Sum_probs=26.9
Q ss_pred ECCCCCCHHHHHHHHHHHHCCCCEEEEE
Q ss_conf 0788874899999999852473159876
Q gi|254780401|r 54 MGGTGKTPTALAIAKAVIDKNLKPGFLS 81 (338)
Q Consensus 54 vGGtGKTP~v~~l~~~l~~~g~~~~ils 81 (338)
.||+|||-++..|+..|.++|+++++++
T Consensus 15 ~~GvGKTT~~~~La~~L~~~G~~v~vi~ 42 (193)
T 1j8m_F 15 VQGTGKTTTAGKLAYFYKKKGFKVGLVG 42 (193)
T ss_dssp SSCSSTTHHHHHHHHHHHHTTCCEEEEE
T ss_pred CCCCCCHHHHHHHHHHHHHCCCCCCEEE
T ss_conf 6555621579999999996697641000
No 20
>>3iqw_A Tail-anchored protein targeting factor GET3; ATPase, Zn binding, protein transport; HET: ANP; 3.00A {Chaetomium thermophilum} PDB: 3iqx_A* 3ibg_A* (A:)
Probab=94.53 E-value=0.03 Score=36.20 Aligned_cols=43 Identities=23% Similarity=0.130 Sum_probs=35.2
Q ss_pred CCCEEEECCEEECCCCCCHHHHHHHHHHHHCCCCEEEEEECCCC
Q ss_conf 89889982300078887489999999985247315987604578
Q gi|254780401|r 43 PIPVICVGGFVMGGTGKTPTALAIAKAVIDKNLKPGFLSRGYGR 86 (338)
Q Consensus 43 ~~pVI~VGNitvGGtGKTP~v~~l~~~l~~~g~~~~ilsRGYg~ 86 (338)
+..||+|.|- =||+|||-++.-||..|.++|+++.+++=-..+
T Consensus 14 ~~~vIav~s~-KGGVGKTT~a~nLA~~La~~g~kVlvid~D~~~ 56 (334)
T 3iqw_A 14 RSLRWIFVGG-KGGVGKTTTSCSLAIQLAKVRRSVLLLSTDPAH 56 (334)
T ss_dssp TTCCEEEEEC-STTSSHHHHHHHHHHHHTTSSSCEEEEECCSSC
T ss_pred CCCEEEEEEC-CCCCCHHHHHHHHHHHHHHCCCCEEEEECCCCC
T ss_conf 7866999969-997819999999999999689958999589998
No 21
>>2woo_A ATPase GET3; tail-anchored, membrane protein, targeting factor, endoplasmic reticulum, TRC40, ATP-binding, golgi apparatus; 3.01A {Schizosaccharomyces pombe} (A:)
Probab=94.47 E-value=0.034 Score=35.81 Aligned_cols=43 Identities=21% Similarity=0.122 Sum_probs=35.5
Q ss_pred CCCEEEECCEEECCCCCCHHHHHHHHHHHHCCCCEEEEEECCCC
Q ss_conf 89889982300078887489999999985247315987604578
Q gi|254780401|r 43 PIPVICVGGFVMGGTGKTPTALAIAKAVIDKNLKPGFLSRGYGR 86 (338)
Q Consensus 43 ~~pVI~VGNitvGGtGKTP~v~~l~~~l~~~g~~~~ilsRGYg~ 86 (338)
+..||+|-|- =||+|||-++.-||..|.++|++|.++.-=+..
T Consensus 17 ~~~vI~v~s~-KGGVGKTTva~nLA~~LA~~G~rVlliD~D~~~ 59 (329)
T 2woo_A 17 TSLKWIFVGG-KGGVGKTTTSCSLAIQMSKVRSSVLLISTDPAH 59 (329)
T ss_dssp TTCCEEEEEC-SSSSSHHHHHHHHHHHHHTSSSCEEEEECCTTC
T ss_pred CCCEEEEEEC-CCCCCHHHHHHHHHHHHHHCCCCEEEEECCCCC
T ss_conf 7826999979-997849999999999999689938999689998
No 22
>>1cp2_A CP2, nitrogenase iron protein; oxidoreductase; 1.93A {Clostridium pasteurianum} (A:)
Probab=94.40 E-value=0.034 Score=35.75 Aligned_cols=34 Identities=15% Similarity=0.138 Sum_probs=30.1
Q ss_pred ECCCCCCHHHHHHHHHHHHCCCCEEEEEECCCCC
Q ss_conf 0788874899999999852473159876045787
Q gi|254780401|r 54 MGGTGKTPTALAIAKAVIDKNLKPGFLSRGYGRK 87 (338)
Q Consensus 54 vGGtGKTP~v~~l~~~l~~~g~~~~ilsRGYg~~ 87 (338)
-||+|||-++..||..|.++|++|.+|.=-..+.
T Consensus 9 KGGvGKTT~a~~lA~~LA~~g~kVlliD~D~~~~ 42 (269)
T 1cp2_A 9 KGGIGKSTTTQNLTSGLHAMGKTIMVVGCDPKAD 42 (269)
T ss_dssp CTTSSHHHHHHHHHHHHHTTTCCEEEEEECTTSC
T ss_pred CCCCCHHHHHHHHHHHHHHCCCCEEEEECCCCCC
T ss_conf 9977699999999999997899689995889998
No 23
>>3e1s_A Exodeoxyribonuclease V, subunit RECD; alpha and beta protein, ATP-binding, nucleotide-binding, hydrolase; 2.20A {Deinococcus radiodurans} PDB: 3gp8_A 3gpl_A* (A:150-344,A:555-574)
Probab=94.36 E-value=0.24 Score=29.71 Aligned_cols=27 Identities=33% Similarity=0.432 Sum_probs=25.4
Q ss_pred CCCCCCHHHHHHHHHHHHCCCCEEEEE
Q ss_conf 788874899999999852473159876
Q gi|254780401|r 55 GGTGKTPTALAIAKAVIDKNLKPGFLS 81 (338)
Q Consensus 55 GGtGKTP~v~~l~~~l~~~g~~~~ils 81 (338)
.|||||-++..|++.+.+.|+++.+++
T Consensus 64 pGTGKT~~~~al~~~~~~~~~~Vl~~A 90 (215)
T 3e1s_A 64 PGTGKSTTTKAVADLAESLGLEVGLCA 90 (215)
T ss_dssp TTSCHHHHHHHHHHHHHHTTCCEEEEE
T ss_pred CCCHHHHHHHHHHHHHHHCCCEEEEEC
T ss_conf 531179999999999986697599414
No 24
>>2qmo_A Dethiobiotin synthetase; structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG; 1.47A {Helicobacter pylori 26695} (A:)
Probab=94.29 E-value=0.034 Score=35.81 Aligned_cols=37 Identities=19% Similarity=0.136 Sum_probs=29.9
Q ss_pred EEEECCEEECCCCCCHHHHHHHHHHHHCCCCEEEEEEC
Q ss_conf 89982300078887489999999985247315987604
Q gi|254780401|r 46 VICVGGFVMGGTGKTPTALAIAKAVIDKNLKPGFLSRG 83 (338)
Q Consensus 46 VI~VGNitvGGtGKTP~v~~l~~~l~~~g~~~~ilsRG 83 (338)
+|.|.+ +-||+|||-++..||..|.++|++|.++.-=
T Consensus 3 ~I~v~s-~kGGvGKTTvs~~LA~~La~~g~kVl~id~D 39 (220)
T 2qmo_A 3 XLFISA-TNTNAGKTTCARLLAQYCNACGVKTILLKPI 39 (220)
T ss_dssp EEEEEE-SSTTSCHHHHHHHHHHHHHHTTCCEEEECCE
T ss_pred EEEEEE-CCCCCCHHHHHHHHHHHHHHCCCEEEEECCC
T ss_conf 899987-9999749999999999999789969998861
No 25
>>1wcv_1 SOJ, segregation protein; ATPase, bacterial, chromosome segregation; 1.6A {Thermus thermophilus} PDB: 2bej_A* 2bek_A* (1:)
Probab=94.28 E-value=0.038 Score=35.45 Aligned_cols=43 Identities=21% Similarity=0.226 Sum_probs=35.3
Q ss_pred CCCEEEECCEEECCCCCCHHHHHHHHHHHHCCCCEEEEEECCCC
Q ss_conf 89889982300078887489999999985247315987604578
Q gi|254780401|r 43 PIPVICVGGFVMGGTGKTPTALAIAKAVIDKNLKPGFLSRGYGR 86 (338)
Q Consensus 43 ~~pVI~VGNitvGGtGKTP~v~~l~~~l~~~g~~~~ilsRGYg~ 86 (338)
+-.||+|.|- -||+|||-++..||..|.++|++|.++-=-..+
T Consensus 5 ~~kvI~v~s~-KGGvGKTTia~~LA~~la~~g~kVlliD~D~~~ 47 (257)
T 1wcv_1 5 KVRRIALANQ-KGGVGKTTTAINLAAYLARLGKRVLLVDLDPQG 47 (257)
T ss_dssp CCCEEEECCS-SCCHHHHHHHHHHHHHHHHTTCCEEEEECCTTC
T ss_pred CCEEEEEECC-CCCCHHHHHHHHHHHHHHHCCCCEEEEECCCCC
T ss_conf 8769999879-998859999999999999789978999679999
No 26
>>2afh_E Nitrogenase iron protein 1; nitrogen fixation, iron-sulfur, metal-binding, molybdenum, oxidoreductase; HET: HCA CFN CLF PGE PG4 P6G 1PE; 2.10A {Azotobacter vinelandii} (E:)
Probab=94.27 E-value=0.035 Score=35.73 Aligned_cols=32 Identities=22% Similarity=0.253 Sum_probs=27.9
Q ss_pred ECCCCCCHHHHHHHHHHHHCCCCEEEEEECCC
Q ss_conf 07888748999999998524731598760457
Q gi|254780401|r 54 MGGTGKTPTALAIAKAVIDKNLKPGFLSRGYG 85 (338)
Q Consensus 54 vGGtGKTP~v~~l~~~l~~~g~~~~ilsRGYg 85 (338)
=||+|||-++.-||..|.++|+++.++-==..
T Consensus 10 KGGVGKTT~a~nLA~~la~~G~rvlliD~D~~ 41 (289)
T 2afh_E 10 KGGIGKSTTTQNLVAALAEMGKKVMIVGCDPK 41 (289)
T ss_dssp CTTSSHHHHHHHHHHHHHHTTCCEEEEEECSS
T ss_pred CCCCCHHHHHHHHHHHHHHCCCCEEEEECCCC
T ss_conf 99888999999999999988998899952899
No 27
>>3end_A Light-independent protochlorophyllide reductase iron-sulfur ATP-binding protein; BCHL, electron donor, DPOR, Fe protein, nitrogenase; HET: ADP; 1.63A {Rhodobacter sphaeroides 2} PDB: 3fwy_A* (A:)
Probab=94.26 E-value=0.035 Score=35.70 Aligned_cols=41 Identities=22% Similarity=0.186 Sum_probs=32.9
Q ss_pred CEEEECCEEECCCCCCHHHHHHHHHHHHCCCCEEEEEECCCCC
Q ss_conf 8899823000788874899999999852473159876045787
Q gi|254780401|r 45 PVICVGGFVMGGTGKTPTALAIAKAVIDKNLKPGFLSRGYGRK 87 (338)
Q Consensus 45 pVI~VGNitvGGtGKTP~v~~l~~~l~~~g~~~~ilsRGYg~~ 87 (338)
.||.+++ -||+|||-++.-||..|.++|++|.+|.--..+.
T Consensus 42 ~Ii~~s~--KGGvGKTT~a~~lA~~La~~g~kVllID~D~~~~ 82 (307)
T 3end_A 42 KVFAVYG--KGGIGKSTTSSNLSAAFSILGKRVLQIGCDPKHD 82 (307)
T ss_dssp EEEEEEC--STTSSHHHHHHHHHHHHHHTTCCEEEEEESSSCC
T ss_pred EEEEEEC--CCCCCHHHHHHHHHHHHHHCCCCEEEEEECCCCC
T ss_conf 3999989--9874799999999999998799289994379986
No 28
>>1byi_A Dethiobiotin synthase; biotin synthesis, cyclo-ligase, ligase; 0.97A {Escherichia coli} (A:)
Probab=94.21 E-value=0.036 Score=35.62 Aligned_cols=37 Identities=19% Similarity=0.104 Sum_probs=30.7
Q ss_pred CEEEECCEEECCCCCCHHHHHHHHHHHHCCCCEEEEEE
Q ss_conf 88998230007888748999999998524731598760
Q gi|254780401|r 45 PVICVGGFVMGGTGKTPTALAIAKAVIDKNLKPGFLSR 82 (338)
Q Consensus 45 pVI~VGNitvGGtGKTP~v~~l~~~l~~~g~~~~ilsR 82 (338)
.+|.|.+. =||+|||-++..||..|.++|++|.++-=
T Consensus 2 kvI~v~s~-KGGvGKTtia~~La~~La~~G~~Vl~id~ 38 (224)
T 1byi_A 2 KRYFVTGT-DTEVGKTVASCALLQAAKAAGYRTAGYKP 38 (224)
T ss_dssp EEEEEEES-STTSCHHHHHHHHHHHHHHTTCCEEEECS
T ss_pred CEEEEEEC-CCCCCHHHHHHHHHHHHHHCCCEEEEECC
T ss_conf 52999979-99953999999999999977994999884
No 29
>>1g3q_A MIND ATPase, cell division inhibitor; alpha-beta-alpha layered, protein-ADP complex, cell cycle, hydrolase; HET: ADP; 2.00A {Pyrococcus furiosus} (A:)
Probab=94.20 E-value=0.057 Score=34.21 Aligned_cols=38 Identities=26% Similarity=0.271 Sum_probs=32.6
Q ss_pred CEEEECCEEECCCCCCHHHHHHHHHHHHCCCCEEEEEEC
Q ss_conf 889982300078887489999999985247315987604
Q gi|254780401|r 45 PVICVGGFVMGGTGKTPTALAIAKAVIDKNLKPGFLSRG 83 (338)
Q Consensus 45 pVI~VGNitvGGtGKTP~v~~l~~~l~~~g~~~~ilsRG 83 (338)
.||+|.|. -||.|||-++.-||..|.++|+++.++-=-
T Consensus 3 kvI~v~s~-KGGvGKTT~a~nLA~~LA~~g~kvlliD~d 40 (237)
T 1g3q_A 3 RIISIVSG-KGGTGKTTVTANLSVALGDRGRKVLAVDGD 40 (237)
T ss_dssp EEEEEECS-STTSSHHHHHHHHHHHHHHTTCCEEEEECC
T ss_pred CEEEEECC-CCCCCHHHHHHHHHHHHHHCCCCEEEEECC
T ss_conf 58999899-999839999999999999779988999799
No 30
>>1ihu_A Arsenical pump-driving ATPase; aluminum fluoride, ADP, ARSA ATPase, ATP binding site, hydrolase; HET: ADP; 2.15A {Escherichia coli} (A:304-589)
Probab=94.13 E-value=0.038 Score=35.40 Aligned_cols=42 Identities=24% Similarity=0.137 Sum_probs=35.1
Q ss_pred CCCEEEECCEEECCCCCCHHHHHHHHHHHHCCCCEEEEEECCC
Q ss_conf 8988998230007888748999999998524731598760457
Q gi|254780401|r 43 PIPVICVGGFVMGGTGKTPTALAIAKAVIDKNLKPGFLSRGYG 85 (338)
Q Consensus 43 ~~pVI~VGNitvGGtGKTP~v~~l~~~l~~~g~~~~ilsRGYg 85 (338)
.-.||+|.|- =||.|||-++..||..|.++|++|++|-==..
T Consensus 22 ~~~vI~v~s~-KGGVGKTT~a~~LA~~La~~g~rVllID~D~~ 63 (286)
T 1ihu_A 22 NEHGLIMLMG-KGGVGKTTMAAAIAVRLADMGFDVHLTTSDPA 63 (286)
T ss_dssp TSCEEEEEEC-STTSSHHHHHHHHHHHHHHTTCCEEEEESCCC
T ss_pred CCCEEEEEEC-CCCCCHHHHHHHHHHHHHHCCCCEEEEECCCC
T ss_conf 1858999948-99872699999999999968993799956898
No 31
>>1a7j_A Phosphoribulokinase; transferase, calvin cycle; 2.50A {Rhodobacter sphaeroides} (A:)
Probab=94.05 E-value=0.074 Score=33.37 Aligned_cols=38 Identities=18% Similarity=0.305 Sum_probs=33.1
Q ss_pred CCEEEECCEEECCCCCCHHHHHHHHHHHHCCCCEEEEEEC
Q ss_conf 9889982300078887489999999985247315987604
Q gi|254780401|r 44 IPVICVGGFVMGGTGKTPTALAIAKAVIDKNLKPGFLSRG 83 (338)
Q Consensus 44 ~pVI~VGNitvGGtGKTP~v~~l~~~l~~~g~~~~ilsRG 83 (338)
.+||+|.-. .|+|||-++..|++.|...|.+++++|+-
T Consensus 5 p~iIgI~G~--sGSGKTTla~~L~~~L~~~~~~~~~i~~D 42 (290)
T 1a7j_A 5 HPIISVTGS--SGAGTSTVKHTFDQIFRREGVKAVSIEGD 42 (290)
T ss_dssp SCEEEEESC--C---CCTHHHHHHHHHHHHTCCEEEEEGG
T ss_pred CCEEEEECC--CCCCHHHHHHHHHHHHHHCCCCEEEEECC
T ss_conf 979999899--87819999999999970569976998377
No 32
>>3fkq_A NTRC-like two-domain protein; RER070207001320, structural genomics, joint center for structural genomics, JCSG, protein structure initiative; HET: ATP 2PE; 2.10A {Eubacterium rectale} (A:139-373)
Probab=94.03 E-value=0.037 Score=35.56 Aligned_cols=42 Identities=24% Similarity=0.172 Sum_probs=34.1
Q ss_pred CCEEEECCEEECCCCCCHHHHHHHHHHHHCCCCEEEEEECCCC
Q ss_conf 9889982300078887489999999985247315987604578
Q gi|254780401|r 44 IPVICVGGFVMGGTGKTPTALAIAKAVIDKNLKPGFLSRGYGR 86 (338)
Q Consensus 44 ~pVI~VGNitvGGtGKTP~v~~l~~~l~~~g~~~~ilsRGYg~ 86 (338)
..||+|.+. -||+|||-++..||..|.++|++|.++---..+
T Consensus 5 ~~vI~v~s~-KGGvGKTT~a~~LA~~la~~G~~VlliD~D~~~ 46 (235)
T 3fkq_A 5 SSVVIFTSP-CGGVGTSTVAAACAIAHANXGKKVFYLNIEQCG 46 (235)
T ss_dssp CEEEEEECS-STTSSHHHHHHHHHHHHHHHTCCEEEEECCTTC
T ss_pred CEEEEEECC-CCCCHHHHHHHHHHHHHHHCCCEEEEEECCCCC
T ss_conf 989999899-998459999999999999589939999589999
No 33
>>3kjh_A CO dehydrogenase/acetyl-COA synthase complex, accessory protein COOC; Zn-bound dimer, nickel binding protein, ATPase; 1.90A {Carboxydothermus hydrogenoformans} PDB: 3kjg_A* 3kje_A 3kji_A* (A:)
Probab=93.89 E-value=0.026 Score=36.63 Aligned_cols=30 Identities=27% Similarity=0.251 Sum_probs=27.5
Q ss_pred ECCCCCCHHHHHHHHHHHHCCCCEEEEEEC
Q ss_conf 078887489999999985247315987604
Q gi|254780401|r 54 MGGTGKTPTALAIAKAVIDKNLKPGFLSRG 83 (338)
Q Consensus 54 vGGtGKTP~v~~l~~~l~~~g~~~~ilsRG 83 (338)
-||+|||-++.-||..|.++|++|.++.==
T Consensus 8 KGGvGKTT~a~~lA~~La~~g~kVlliD~D 37 (254)
T 3kjh_A 8 KGGVGKTTVAAGLIKIMASDYDKIYAVDGD 37 (254)
T ss_dssp SSSHHHHHHHHHHHHHHTTTCSCEEEEEEC
T ss_pred CCCCHHHHHHHHHHHHHHHCCCCEEEEECC
T ss_conf 882259999999999999789979999779
No 34
>>3igf_A ALL4481 protein; two-domained protein consisting of the N-terminal alpha-beta fold and the C-terminal all beta domain., structural genomics, PSI-2; 2.00A {Nostoc SP} (A:1-297)
Probab=93.82 E-value=0.032 Score=35.98 Aligned_cols=36 Identities=19% Similarity=0.096 Sum_probs=31.3
Q ss_pred CEEEECCEEECCCCCCHHHHHHHHHHHHCCCCEEEEE
Q ss_conf 8899823000788874899999999852473159876
Q gi|254780401|r 45 PVICVGGFVMGGTGKTPTALAIAKAVIDKNLKPGFLS 81 (338)
Q Consensus 45 pVI~VGNitvGGtGKTP~v~~l~~~l~~~g~~~~ils 81 (338)
-||+|.|. =||+|||-++.-||..|.+.|++++++-
T Consensus 2 aiI~v~s~-KGGVGKTT~a~nLA~~LA~~g~~v~li~ 37 (297)
T 3igf_A 2 ALILTFLG-KSGVARTKIAIAAAKLLASQGKRVLLAG 37 (297)
T ss_dssp CEEEEEEC-SBHHHHHHHHHHHHHHHHHTTCCEEEEE
T ss_pred CEEEEEEC-CCCCCHHHHHHHHHHHHHHCCCCEEEEC
T ss_conf 79999988-9878299999999999997899599991
No 35
>>3ea0_A ATPase, para family; alpha-beta-alpha sandwich, structural genomics, PSI-2, protein structure initiative; HET: ATP; 2.20A {Chlorobium tepidum tls} (A:)
Probab=93.53 E-value=0.073 Score=33.44 Aligned_cols=40 Identities=18% Similarity=0.079 Sum_probs=31.0
Q ss_pred CCEEEECCEEECCCCCCHHHHHHHHHHHHCC-CCEEEEEECC
Q ss_conf 9889982300078887489999999985247-3159876045
Q gi|254780401|r 44 IPVICVGGFVMGGTGKTPTALAIAKAVIDKN-LKPGFLSRGY 84 (338)
Q Consensus 44 ~pVI~VGNitvGGtGKTP~v~~l~~~l~~~g-~~~~ilsRGY 84 (338)
..||+|.|. -||+|||.++.-||..|.++| +++.++---.
T Consensus 4 ~kvI~v~s~-KGGvGKTT~a~~LA~~La~~g~~~vllid~d~ 44 (245)
T 3ea0_A 4 KRVFGFVSA-KGGDGGSCIAANFAFALSQEPDIHVLAVDISL 44 (245)
T ss_dssp CEEEEEEES-STTSSHHHHHHHHHHHHTTSTTCCEEEEECCT
T ss_pred CEEEEEECC-CCCCHHHHHHHHHHHHHHHHCCCCEEEEECCC
T ss_conf 879999899-99665999999999999985899899997989
No 36
>>1w78_A FOLC bifunctional protein; DHFS, dihydrofolate synthase, synthase, ATP-binding, folate biosynthesis, ligase, multifunctional enzyme; HET: KCX PD8 ADP; 1.82A {Escherichia coli} PDB: 1w7k_A* (A:1-286)
Probab=93.37 E-value=0.68 Score=26.52 Aligned_cols=131 Identities=18% Similarity=0.124 Sum_probs=71.1
Q ss_pred CCCCCCCCEEEECCEEECCCCCCHHHHHHHHHHHHCCCCEEEEEECCCCCCCCCEEEECCCCC---HHHHCCHHHHHHHC
Q ss_conf 643388988998230007888748999999998524731598760457877775587145678---87704212332205
Q gi|254780401|r 38 QRLHAPIPVICVGGFVMGGTGKTPTALAIAKAVIDKNLKPGFLSRGYGRKSRISFRVDLEKHS---AYDVGDEPLLLARR 114 (338)
Q Consensus 38 ~~~~~~~pVI~VGNitvGGtGKTP~v~~l~~~l~~~g~~~~ilsRGYg~~~~~~~~v~~~~~~---~~~vGDEp~lla~~ 114 (338)
.....+.|||.| +|=.|||.++.+|+..|++.|++++...-|..........+.....+ .....+|.......
T Consensus 43 ~~~~~~~~vI~V----TGT~GKTTt~~li~~iL~~~g~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 118 (286)
T 1w78_A 43 GVLKPAPFVFTV----AGTNGKGTTCRTLESILMAAGYKVGVYSSPHLVRYTERVRVQGQELPESAHTASFAEIESARGD 118 (286)
T ss_dssp TCSSCSSEEEEE----ECSSCHHHHHHHHHHHHHHTTCCEEEECCSCSSCGGGGEEETTEECCHHHHHHHHHHHHHHTTT
T ss_pred CCCCCCCCEEEE----ECCCCHHHHHHHHHHHHHHCCCCEEEECCCCCCCCCCEEEECCCCCCHHHHHHHHHHHHHHHHC
T ss_conf 996425988999----8882289999999999998899889978986124344078754304468765567777776423
Q ss_pred CCCCCCCCHHH---HHHHHCCCCCCEEEECCCCCCC-----CCCCEEEEEEECCCCCCCCCCCCCCHHHHHCC
Q ss_conf 76346520122---5664102457479971832234-----41230699996184335665537613652100
Q gi|254780401|r 115 AVTIVTSDRKI---GVQMLLQEGVDIIIMDDGFHSA-----DLQADFSLIVVNSHRGLGNGLVFPAGPLRVPL 179 (338)
Q Consensus 115 ~pv~V~~~R~~---~~~~~~~~~~diiIlDDGfQh~-----~l~rdl~Ivl~d~~~~~gn~~llPaGpLREp~ 179 (338)
......... +.......++|+.++.=+.++. .+.+|+-++. ..+.+++=-.|...|-+
T Consensus 119 --~~~~~~~~~~~~~~~~~~~~~~~~~v~E~~~~~~~~~~~~~~p~v~vit-----ni~~dHl~~~g~~~~~i 184 (286)
T 1w78_A 119 --ISLTYFEYGTLSALWLFKQAQLDVVILEVGLGGRLDATNIVDADVAVVT-----SIALDHTDWLGPDRESI 184 (286)
T ss_dssp --CCCCHHHHHHHHHHHHHHHHTCSEEEEECSSSSTTSGGGGSCCSEEEEC-----CCCSCCHHHHCSSHHHH
T ss_pred --CCCCHHHHHHHHHHHHHHCCCCCEEEECCCHHHHHCCCEEEECCHHHHH-----CCCCHHHHHHHHHHHHH
T ss_conf --4630477889999998750387566302210444324302202222210-----00100244445677766
No 37
>>2g0t_A Conserved hypothetical protein; TM0796, structural genomics, PSI, protein structure initiative, joint center for structural genomics, JCSG; 2.67A {Thermotoga maritima} (A:160-350)
Probab=93.30 E-value=0.18 Score=30.64 Aligned_cols=46 Identities=33% Similarity=0.463 Sum_probs=36.8
Q ss_pred CCCCCCCCCEEEECCEEECCCCCCHHHHHHHHHHHHCCCCEEEEEEC
Q ss_conf 46433889889982300078887489999999985247315987604
Q gi|254780401|r 37 GQRLHAPIPVICVGGFVMGGTGKTPTALAIAKAVIDKNLKPGFLSRG 83 (338)
Q Consensus 37 ~~~~~~~~pVI~VGNitvGGtGKTP~v~~l~~~l~~~g~~~~ilsRG 83 (338)
++....++|+|.|-- |--|+|||-++..|.+.|+++|+++....-|
T Consensus 3 ~~~~~~~~p~i~i~G-t~sg~GKTt~t~~L~~al~~rG~~v~~~k~G 48 (191)
T 2g0t_A 3 GGIYRKKIKVVGVFG-TDCVVGKRTTAVQLWERALEKGIKAGFLATG 48 (191)
T ss_dssp SGGGGCCSEEEEEEE-SSSSSSHHHHHHHHHHHHHHTTCCEEEEECS
T ss_pred CCCCCCCCCEEEEEC-CCCCCCHHHHHHHHHHHHHHCCCCEEEEECC
T ss_conf 410037874899955-7745138999999999999779972599707
No 38
>>3ez2_A Plasmid partition protein A; type IA, DNA binding, winged-HTH, DNA binding protein; HET: ADP EPE; 2.05A {Escherichia coli} PDB: 3ez6_A* 3ez7_A (A:103-398)
Probab=92.98 E-value=0.073 Score=33.41 Aligned_cols=41 Identities=22% Similarity=0.325 Sum_probs=32.4
Q ss_pred CCEEEECCEEECCCCCCHHHHHHHHH------HHHCCCCEEEEEECCC
Q ss_conf 98899823000788874899999999------8524731598760457
Q gi|254780401|r 44 IPVICVGGFVMGGTGKTPTALAIAKA------VIDKNLKPGFLSRGYG 85 (338)
Q Consensus 44 ~pVI~VGNitvGGtGKTP~v~~l~~~------l~~~g~~~~ilsRGYg 85 (338)
..||+|.|. -||+|||-++.-||.. |..+|++|.+|-=-..
T Consensus 6 ~~vI~v~s~-KGGvGKTT~a~nlA~~~~~~~~l~~~G~rVl~ID~D~q 52 (296)
T 3ez2_A 6 AYVIFISNL-KGGVSKTVSTVSLAHAMRAHPHLLMEDLRILVIDLDPQ 52 (296)
T ss_dssp CEEEEECCS-SSSSSHHHHHHHHHHHHHHCTTTGGGCCCEEEEEECTT
T ss_pred CEEEEEECC-CCCCCHHHHHHHHHHHHHHHHHHHHCCCCEEEECCCCC
T ss_conf 759999668-99875899999999999961055525984799679874
No 39
>>3ez9_A Para; DNA binding, winged-HTH, partition, biosynthetic protein; 2.80A {Salmonella enterica subsp} PDB: 3ezf_A (A:106-403)
Probab=92.83 E-value=0.11 Score=32.20 Aligned_cols=46 Identities=24% Similarity=0.239 Sum_probs=35.7
Q ss_pred CCCCEEEECCEEECCCCCCHHHHHHHHHHH------HCCCCEEEEEECCCCCC
Q ss_conf 889889982300078887489999999985------24731598760457877
Q gi|254780401|r 42 APIPVICVGGFVMGGTGKTPTALAIAKAVI------DKNLKPGFLSRGYGRKS 88 (338)
Q Consensus 42 ~~~pVI~VGNitvGGtGKTP~v~~l~~~l~------~~g~~~~ilsRGYg~~~ 88 (338)
-+..||+|-|. =||+|||-++.-||-+|. ++|++|.++---.-+..
T Consensus 4 ~~~kvI~v~~~-KGGvGKTT~a~nlA~~la~~~~l~~~g~~VlviD~D~q~~~ 55 (298)
T 3ez9_A 4 KSPYVIFVVNL-KGGVSKTVSTVTLAHALRVHQDLLRHDLRILVIDLDPQASS 55 (298)
T ss_dssp CSCEEEEECCC---------CHHHHHHHHHSCGGGGGGCCCEEEEEESSSSGG
T ss_pred CCCEEEEEECC-CCCHHHHHHHHHHHHHHHHCCHHHHCCCCEEEEECCCCCCH
T ss_conf 99759999781-78107899999999999842056658997899979987665
No 40
>>3cio_A ETK, tyrosine-protein kinase ETK; WZC, escherichia coli tyrosine kinase domain, signaling protein, transferase, inner membrane, membrane; 2.50A {Escherichia coli} (A:)
Probab=92.82 E-value=0.16 Score=31.08 Aligned_cols=41 Identities=17% Similarity=0.254 Sum_probs=34.3
Q ss_pred CCCCCEEEECCEEECCCCCCHHHHHHHHHHHHCCCCEEEEEE
Q ss_conf 388988998230007888748999999998524731598760
Q gi|254780401|r 41 HAPIPVICVGGFVMGGTGKTPTALAIAKAVIDKNLKPGFLSR 82 (338)
Q Consensus 41 ~~~~pVI~VGNitvGGtGKTP~v~~l~~~l~~~g~~~~ilsR 82 (338)
.-+..||.|-+. -||.|||-++.-||..|.++|.++.++-=
T Consensus 101 ~~~~~vI~v~s~-kgGvGKTtia~~LA~~La~~g~~vlliD~ 141 (299)
T 3cio_A 101 ETENNILMITGA-TPDSGKTFVSSTLAAVIAQSDQKVLFIDA 141 (299)
T ss_dssp SCSCCEEEEEES-SSSSCHHHHHHHHHHHHHHTTCCEEEEEC
T ss_pred CCCCEEEEEECC-CCCCCHHHHHHHHHHHHHHCCCCEEEECC
T ss_conf 999839999899-97998899999999999977995899845
No 41
>>2woj_A ATPase GET3; tail-anchored, membrane protein, targeting factor, endoplasmic reticulum, TRC40, ATP-binding, golgi apparatus; HET: ADP; 1.99A {Saccharomyces cerevisiae} PDB: 3h84_A 3idq_A 3a36_A 3a37_A* (A:)
Probab=92.45 E-value=0.11 Score=32.25 Aligned_cols=43 Identities=23% Similarity=0.178 Sum_probs=33.5
Q ss_pred CCCEEEECCEEECCCCCCHHHHHHHHH--HHHCCCCEEEEEECCCC
Q ss_conf 898899823000788874899999999--85247315987604578
Q gi|254780401|r 43 PIPVICVGGFVMGGTGKTPTALAIAKA--VIDKNLKPGFLSRGYGR 86 (338)
Q Consensus 43 ~~pVI~VGNitvGGtGKTP~v~~l~~~--l~~~g~~~~ilsRGYg~ 86 (338)
+-.+|+|-|- =||+|||-++.-||.. |.++|++|.++.=-+..
T Consensus 16 ~~~iIav~s~-KGGVGKTT~a~nLA~a~~lA~~G~rVLviD~D~q~ 60 (354)
T 2woj_A 16 TTHKWIFVGG-KGGVGKTTSSCSIAIQMALSQPNKQFLLISTDPAH 60 (354)
T ss_dssp SSCCEEEEEE-STTSSHHHHHHHHHHHHHHHCTTSCEEEEECCSSC
T ss_pred CCCEEEEEEC-CCCCHHHHHHHHHHHHHHHHCCCCCEEEEECCCCC
T ss_conf 9857999979-99760999999999999986589908999269999
No 42
>>1bif_A 6-phosphofructo-2-kinase/ fructose-2,6- bisphosphatase; transferase (phospho), hydrolase (phospho), glycolysis, bifunctional enzyme; HET: ATG; 2.00A {Rattus norvegicus} (A:1-231)
Probab=92.35 E-value=0.049 Score=34.63 Aligned_cols=35 Identities=17% Similarity=0.236 Sum_probs=29.4
Q ss_pred EEEECCEEECCCCCCHHHHHHHHHHHHCCCCEEEEEEC
Q ss_conf 89982300078887489999999985247315987604
Q gi|254780401|r 46 VICVGGFVMGGTGKTPTALAIAKAVIDKNLKPGFLSRG 83 (338)
Q Consensus 46 VI~VGNitvGGtGKTP~v~~l~~~l~~~g~~~~ilsRG 83 (338)
|+.|| .-|+|||-++..|+++|+++|+++.+++-+
T Consensus 42 I~~vG---lpGsGKTT~a~~la~~l~~~g~~~~~i~~D 76 (231)
T 1bif_A 42 IVMVG---LPARGKTYISKKLTRYLNFIGVPTREFNVG 76 (231)
T ss_dssp EEEEC---CTTSSHHHHHHHHHHHHHHTTCCEEEEEHH
T ss_pred EEEEC---CCCCCHHHHHHHHHHHHHCCCCCEEEECCH
T ss_conf 99989---999998999999999973279873881507
No 43
>>2axn_A 6-phosphofructo-2-kinase/fructose-2,6- biphosphatase 3 (6PF-2-K/FRU- 2,6-P2ASE brain/placenta-type...; bifunctional enzyme, EDTA complex; HET: F6P EDT ADP; 2.10A {Homo sapiens} PDB: 2dwo_A* 2dwp_A* 2i1v_B* (A:27-244)
Probab=92.31 E-value=0.046 Score=34.86 Aligned_cols=38 Identities=16% Similarity=0.201 Sum_probs=31.6
Q ss_pred CCEEEECCEEECCCCCCHHHHHHHHHHHHCCCCEEEEEECC
Q ss_conf 98899823000788874899999999852473159876045
Q gi|254780401|r 44 IPVICVGGFVMGGTGKTPTALAIAKAVIDKNLKPGFLSRGY 84 (338)
Q Consensus 44 ~pVI~VGNitvGGtGKTP~v~~l~~~l~~~g~~~~ilsRGY 84 (338)
.-||.+| .-|+|||-++..|++++..+|.++.++|-+-
T Consensus 10 ~viil~G---lpGsGKST~A~~L~~~~~~~~~~~~~~~~D~ 47 (218)
T 2axn_A 10 TVIVMVG---LPARGKTYISKKLTRYLNWIGVPTKVFNVGE 47 (218)
T ss_dssp EEEEEEC---CTTSSHHHHHHHHHHHHHHTTCCEEEEEHHH
T ss_pred EEEEEEC---CCCCCHHHHHHHHHHHHHCCCCCEEEECCHH
T ss_conf 4999989---9999889999999999722798816823448
No 44
>>2j9r_A Thymidine kinase; TK1, DNK, lasso, transferase, ATP-binding, deoxyribonucleoside kinase, DNA synthesis, phosphate acceptor; HET: THM; 2.7A {Bacillus anthracis} PDB: 2ja1_A* (A:1-167)
Probab=92.29 E-value=0.37 Score=28.41 Aligned_cols=35 Identities=9% Similarity=0.046 Sum_probs=27.8
Q ss_pred EEEECCEEECCCCCCHHHHHHHHHHHHCCCCEEEEEEC
Q ss_conf 89982300078887489999999985247315987604
Q gi|254780401|r 46 VICVGGFVMGGTGKTPTALAIAKAVIDKNLKPGFLSRG 83 (338)
Q Consensus 46 VI~VGNitvGGtGKTP~v~~l~~~l~~~g~~~~ilsRG 83 (338)
++-+|-. |+|||...+.++..+...|+++.++.-.
T Consensus 31 ~~i~G~m---gsGKTt~L~~~~~~~~~~~~kv~ii~p~ 65 (167)
T 2j9r_A 31 EVICGSM---FSGKSEELIRRVRRTQFAKQHAIVFKPC 65 (167)
T ss_dssp EEEECST---TSCHHHHHHHHHHHHHHTTCCEEEEECC
T ss_pred EEEEECC---CCHHHHHHHHHHHHHHHCCCEEEEEEEC
T ss_conf 9999050---7889999999999999879909998041
No 45
>>3io3_A DEHA2D07832P; chaperone, membrane traffic, ATPase; HET: ADP; 1.80A {Debaryomyces hansenii} (A:)
Probab=91.69 E-value=0.15 Score=31.25 Aligned_cols=43 Identities=26% Similarity=0.175 Sum_probs=33.3
Q ss_pred CCCEEEECCEEECCCCCCHHHHHHHH--HHHHCCCCEEEEEECCCC
Q ss_conf 89889982300078887489999999--985247315987604578
Q gi|254780401|r 43 PIPVICVGGFVMGGTGKTPTALAIAK--AVIDKNLKPGFLSRGYGR 86 (338)
Q Consensus 43 ~~pVI~VGNitvGGtGKTP~v~~l~~--~l~~~g~~~~ilsRGYg~ 86 (338)
+..||+|-|- =||+|||-++.-||- .|.+.|+++.+++-=..+
T Consensus 16 ~~~vI~v~s~-KGGVGKTT~a~nLA~a~~La~~G~rVLlvd~Dpq~ 60 (348)
T 3io3_A 16 DSLKWIFVGG-KGGVGKTTTSSSVAVQLALAQPNEQFLLISTDPAH 60 (348)
T ss_dssp TTCSEEEEEC-STTSSHHHHHHHHHHHHHHHCTTSCEEEEECCSSC
T ss_pred CCCEEEEEEC-CCCCHHHHHHHHHHHHHHHHHCCCEEEEEECCCCC
T ss_conf 8846999969-99562999999999999998589908999579998
No 46
>>1zu4_A FTSY; GTPase, signal recognition particle, SRP, receptor, protein transport; 1.95A {Mycoplasma mycoides} PDB: 1zu5_A (A:97-299)
Probab=91.55 E-value=0.16 Score=30.93 Aligned_cols=32 Identities=22% Similarity=0.123 Sum_probs=28.2
Q ss_pred CCEEECCCCCCHHHHHHHHHHHHCCCCEEEEE
Q ss_conf 23000788874899999999852473159876
Q gi|254780401|r 50 GGFVMGGTGKTPTALAIAKAVIDKNLKPGFLS 81 (338)
Q Consensus 50 GNitvGGtGKTP~v~~l~~~l~~~g~~~~ils 81 (338)
|=.=.||+|||-++..|++.|...|.++++++
T Consensus 13 ~i~G~~G~GKTTla~kl~~~l~~~g~~~~~i~ 44 (203)
T 1zu4_A 13 MLVGVNGTGKTTSLAKMANYYAELGYKVLIAA 44 (203)
T ss_dssp EEESSTTSSHHHHHHHHHHHHHHTTCCEEEEE
T ss_pred EEECCCCCCCCHHHHHHHHHHHHCCCCCEEEE
T ss_conf 95053013530378899999998099622675
No 47
>>3k9g_A PF-32 protein; ssgcid, SBRI, decode biostructures, UW, NIH, niaid, borellia burgdorferi, plasmid partition protein, iodide, SAD phasing; 2.25A {Borrelia burgdorferi} PDB: 3k9h_A (A:)
Probab=91.52 E-value=0.24 Score=29.81 Aligned_cols=44 Identities=18% Similarity=0.191 Sum_probs=34.1
Q ss_pred CCCCCCCEEEECCEEECCCCCCHHHHHHHHHHHHCCCCEEEEEEC
Q ss_conf 433889889982300078887489999999985247315987604
Q gi|254780401|r 39 RLHAPIPVICVGGFVMGGTGKTPTALAIAKAVIDKNLKPGFLSRG 83 (338)
Q Consensus 39 ~~~~~~pVI~VGNitvGGtGKTP~v~~l~~~l~~~g~~~~ilsRG 83 (338)
+...+..||.|-|. -||+|||-++.-||..|.++|..+.+.---
T Consensus 22 ~~~~~~~vIav~s~-KGGvGKTTia~~LA~~la~~g~~~lvd~D~ 65 (267)
T 3k9g_A 22 MDNKKPKIITIASI-KGGVGKSTSAIILATLLSKNNKVLLIDMDT 65 (267)
T ss_dssp ----CCEEEEECCS-SSSSCHHHHHHHHHHHHTTTSCEEEEEECT
T ss_pred CCCCCCEEEEEECC-CCCCHHHHHHHHHHHHHHCCCCEEEEECCC
T ss_conf 67889979999789-998669999999999998699889993676
No 48
>>2b8t_A Thymidine kinase; deoxyribonucleoside kinase, zinc-binding domain, TK1, UU-TK, transferase; HET: THM; 2.00A {Ureaplasma parvum} (A:1-155)
Probab=90.88 E-value=0.58 Score=27.04 Aligned_cols=26 Identities=15% Similarity=0.042 Sum_probs=24.8
Q ss_pred CCCCCHHHHHHHHHHHHCCCCEEEEE
Q ss_conf 88874899999999852473159876
Q gi|254780401|r 56 GTGKTPTALAIAKAVIDKNLKPGFLS 81 (338)
Q Consensus 56 GtGKTP~v~~l~~~l~~~g~~~~ils 81 (338)
|+|||-+...++..+...|.++..++
T Consensus 22 GsGKTtl~lq~a~~~~~~g~~v~~~~ 47 (155)
T 2b8t_A 22 FAGKTAELIRRLHRLEYADVKYLVFK 47 (155)
T ss_dssp TSCHHHHHHHHHHHHHHTTCCEEEEE
T ss_pred CCHHHHHHHHHHHHHHHCCCEEEEEE
T ss_conf 77889999999999998799499998
No 49
>>3bfv_A CAPA1, CAPB2, membrane protein CAPA1, protein tyrosine kinase; chimerical protein, P-loop protein, capsule biogenesis/degradation; HET: ADP; 1.80A {Staphylococcus aureus} PDB: 2ved_A* (A:)
Probab=90.68 E-value=0.2 Score=30.24 Aligned_cols=42 Identities=19% Similarity=0.213 Sum_probs=34.5
Q ss_pred CCCCCCEEEECCEEECCCCCCHHHHHHHHHHHHCCCCEEEEEE
Q ss_conf 3388988998230007888748999999998524731598760
Q gi|254780401|r 40 LHAPIPVICVGGFVMGGTGKTPTALAIAKAVIDKNLKPGFLSR 82 (338)
Q Consensus 40 ~~~~~pVI~VGNitvGGtGKTP~v~~l~~~l~~~g~~~~ilsR 82 (338)
...+-.||.|-+. -||.|||-++..||..|.++|++|.++-=
T Consensus 78 ~~~~~~vi~v~s~-kgG~GKTtia~nLA~~la~~g~~VlliD~ 119 (271)
T 3bfv_A 78 PDSAVQSIVITSE-APGAGKSTIAANLAVAYAQAGYKTLIVDG 119 (271)
T ss_dssp TTCCCCEEEEECS-STTSSHHHHHHHHHHHHHHTTCCEEEEEC
T ss_pred CCCCCEEEEEECC-CCCCCHHHHHHHHHHHHHHCCCCEEEECC
T ss_conf 7999859999789-98998899999999999967994899855
No 50
>>3bos_A Putative DNA replication factor; YP_927791.1, putative DNA replication regulator HDA, structural genomics; HET: MSE CDP; 1.75A {Shewanella amazonensis SB2B} (A:1-175)
Probab=90.40 E-value=0.67 Score=26.60 Aligned_cols=36 Identities=11% Similarity=0.104 Sum_probs=27.9
Q ss_pred CCCEEEECCEEECCCCCCHHHHHHHHHHHHCCCCEEEEE
Q ss_conf 898899823000788874899999999852473159876
Q gi|254780401|r 43 PIPVICVGGFVMGGTGKTPTALAIAKAVIDKNLKPGFLS 81 (338)
Q Consensus 43 ~~pVI~VGNitvGGtGKTP~v~~l~~~l~~~g~~~~ils 81 (338)
+-.++..|-- |||||-++.++|+.+...+..+..+.
T Consensus 52 ~~~ill~Gpp---GtGKT~la~aia~~l~~~~~~~~~~~ 87 (175)
T 3bos_A 52 VQAIYLWGPV---KSGRTHLIHAACARANELERRSFYIP 87 (175)
T ss_dssp CSEEEEECST---TSSHHHHHHHHHHHHHHTTCCEEEEE
T ss_pred CCEEEEECCC---CCCHHHHHHHHHHHHHHCCHHEEHHH
T ss_conf 8749998998---66688999999998532120001027
No 51
>>1j6u_A UDP-N-acetylmuramate-alanine ligase MURC; structural genomics, TM0231, JCSG, PSI, protein structure initiative; 2.30A {Thermotoga maritima} (A:114-308)
Probab=89.68 E-value=0.76 Score=26.20 Aligned_cols=67 Identities=16% Similarity=0.155 Sum_probs=40.4
Q ss_pred CEEEECCEEECCCCCCHHHHHHHHHHHHCCCCEEEEEECCCCCC-CCCEEEECCCCCHHHHCCHHHHHHHCCC
Q ss_conf 88998230007888748999999998524731598760457877-7755871456788770421233220576
Q gi|254780401|r 45 PVICVGGFVMGGTGKTPTALAIAKAVIDKNLKPGFLSRGYGRKS-RISFRVDLEKHSAYDVGDEPLLLARRAV 116 (338)
Q Consensus 45 pVI~VGNitvGGtGKTP~v~~l~~~l~~~g~~~~ilsRGYg~~~-~~~~~v~~~~~~~~~vGDEp~lla~~~p 116 (338)
|||+| .|--|||-++.+++..|++.|+++.... +++... ...........-..|+|+-..+.....|
T Consensus 2 ~vi~V----tGT~GKTtt~~ll~~iL~~~g~~~~~~~-~~~~~~~~~~~~~~~~~~~v~e~~~~~~~~~~~~p 69 (195)
T 1j6u_A 2 EEFAV----TGTDGKTTTTAXVAHVLKHLRKSPTVFL-GGIXDSLEHGNYEKGNGPVVYELDESEEFFSEFSP 69 (195)
T ss_dssp CEEEE----ECSSSHHHHHHHHHHHHHHTTCCCEEEC-SSCCTTSTTSSEECCSSCEEEEECTTSGGGGGCCC
T ss_pred CEEEE----ECCCCCHHHHHHHHHHHCCCCCCCEEEC-CCCCCCCHHHHHCCCCCEEEEEECCCCCCCEEECC
T ss_conf 57999----7888715399999998603587541214-77566420234316996089982045453202268
No 52
>>3eag_A UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl- MESO-diaminopimelate ligase; structural genomics, PSI-2, protein structure initiative; 2.55A {Neisseria meningitidis MC58} (A:106-326)
Probab=89.64 E-value=0.51 Score=27.40 Aligned_cols=43 Identities=35% Similarity=0.346 Sum_probs=34.7
Q ss_pred CCCEEEECCEEECCCCCCHHHHHHHHHHHHCCCCEEEEEECCCCCCC
Q ss_conf 89889982300078887489999999985247315987604578777
Q gi|254780401|r 43 PIPVICVGGFVMGGTGKTPTALAIAKAVIDKNLKPGFLSRGYGRKSR 89 (338)
Q Consensus 43 ~~pVI~VGNitvGGtGKTP~v~~l~~~l~~~g~~~~ilsRGYg~~~~ 89 (338)
+.|||+| +|=-|||-++.+|+..|++.|++++..+-|......
T Consensus 2 ~~~vI~V----tGT~GKttt~~ll~~iL~~~G~~~~~~~s~~~~~~~ 44 (221)
T 3eag_A 2 HHWVLGV----AGTHGKTTTASXLAWVLEYAGLAPGFLIGGVPENFG 44 (221)
T ss_dssp GSEEEEE----ESSSCHHHHHHHHHHHHHHTTCCCEEECSSEETTSS
T ss_pred CCCCEEE----EEECCCHHHHHHHHHHHHHCCCCCCCCCCCCCCCCC
T ss_conf 5742256----542041368999999999709975323222235555
No 53
>>1rj9_A FTSY, signal recognition protein; SRP-GTPase domain, heterodimer, nucleotide twinning, protein-protein complex, protein transport; HET: GCP; 1.90A {Thermus aquaticus} (A:96-293)
Probab=89.34 E-value=0.3 Score=29.01 Aligned_cols=31 Identities=23% Similarity=0.223 Sum_probs=27.6
Q ss_pred EECCCCCCHHHHHHHHHHHHCCCCEEEEEEC
Q ss_conf 0078887489999999985247315987604
Q gi|254780401|r 53 VMGGTGKTPTALAIAKAVIDKNLKPGFLSRG 83 (338)
Q Consensus 53 tvGGtGKTP~v~~l~~~l~~~g~~~~ilsRG 83 (338)
=-||+|||-++..|+..|...|.++.+..--
T Consensus 14 G~nG~GKTTl~~~La~~l~~~gg~v~i~~~D 44 (198)
T 1rj9_A 14 GVNGVGKTTTIAKLGRYYQNLGKKVMFCAGD 44 (198)
T ss_dssp CSTTSSHHHHHHHHHHHHHTTTCCEEEECCC
T ss_pred CCCCCCCCHHHHHHHHHHHHHCCCCEEEECC
T ss_conf 4667774118999999986511540034214
No 54
>>2get_A Pantothenate kinase; homodimer, COA biosynthesis, nucleotide binding, transferase; HET: CME COK; 2.35A {Mycobacterium tuberculosis H37RV} PDB: 2ges_A* 2geu_A* 2gev_A* 2zs7_A* 2zs8_A* 2zs9_A* 2zsa_A* 2zsb_A* 2zsd_A* 2zse_A* 2zsf_A* (A:1-131,A:196-312)
Probab=88.81 E-value=0.37 Score=28.40 Aligned_cols=29 Identities=14% Similarity=0.165 Sum_probs=25.7
Q ss_pred EECCCCCCHHHHHHHHHHHH--CCCCEEEEE
Q ss_conf 00788874899999999852--473159876
Q gi|254780401|r 53 VMGGTGKTPTALAIAKAVID--KNLKPGFLS 81 (338)
Q Consensus 53 tvGGtGKTP~v~~l~~~l~~--~g~~~~ils 81 (338)
=+-|.|||-++.-||.+|+. +|++|++++
T Consensus 97 GptGVGKTTTiaKLA~~l~~~~~g~kV~Lit 127 (248)
T 2get_A 97 GSVAVGKSTTARVLQALLARWDHHPRVDLVT 127 (248)
T ss_dssp ECTTSSHHHHHHHHHHHHHCSTTCCCEEEEE
T ss_pred CCCCCCCCHHHHHHHHHHHHCCCCCCEEEEE
T ss_conf 7988873899999999985207999659996
No 55
>>1o5z_A Folylpolyglutamate synthase/dihydrofolate synthase; TM0166, structural genomics, JCSG, PSI, protein structure initiative; 2.10A {Thermotoga maritima} (A:1-304)
Probab=88.20 E-value=2.1 Score=23.13 Aligned_cols=119 Identities=18% Similarity=0.113 Sum_probs=63.5
Q ss_pred HHCCCCCCCCCEEEECCEEECCCCCCHHHHHHHHHHHHCCCCEEEEEECCCCCCCCCEEEECCCCCHHHH------CCHH
Q ss_conf 4046433889889982300078887489999999985247315987604578777755871456788770------4212
Q gi|254780401|r 35 KRGQRLHAPIPVICVGGFVMGGTGKTPTALAIAKAVIDKNLKPGFLSRGYGRKSRISFRVDLEKHSAYDV------GDEP 108 (338)
Q Consensus 35 ~~~~~~~~~~pVI~VGNitvGGtGKTP~v~~l~~~l~~~g~~~~ilsRGYg~~~~~~~~v~~~~~~~~~v------GDEp 108 (338)
.+......+.|||+| +|=-|||.++-+|+..|++.|++++...-|.-........+.....+.... -++.
T Consensus 43 ~~l~~~~~~~~vI~V----tGTnGKTTTt~ll~~iL~~~g~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~ 118 (304)
T 1o5z_A 43 SKLGNPHLEYKTIHI----GGTNGKGSVANMVSNILVSQGYRVGSYYSPHLSTFRERIRLNEEYISEEDVVKIYETMEPI 118 (304)
T ss_dssp HHTTCGGGSSEEEEE----ECSSSHHHHHHHHHHHHHHHTCCEEEECCSCSSCGGGGEEETTEECCHHHHHHHHHHHHHH
T ss_pred HHCCCCHHHCCEEEE----ECCCCHHHHHHHHHHHHHHCCCCEEEECCCCCCCCEEEEEECCEECCHHHHHHHHHHHHHH
T ss_conf 981990760988999----7982479999999999998799879978886074202899999934778889988877776
Q ss_pred HHHHH-CC--CCCCCCCHHHHH-HHHCCCCCCEEEECCCCC---C--CCCCCEEEEEE
Q ss_conf 33220-57--634652012256-641024574799718322---3--44123069999
Q gi|254780401|r 109 LLLAR-RA--VTIVTSDRKIGV-QMLLQEGVDIIIMDDGFH---S--ADLQADFSLIV 157 (338)
Q Consensus 109 ~lla~-~~--pv~V~~~R~~~~-~~~~~~~~diiIlDDGfQ---h--~~l~rdl~Ivl 157 (338)
..... .. +.....--...+ ......+.|+.+++-+-. + ..+++|.-+++
T Consensus 119 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~v~E~~~~~~~~~~~~~~p~v~vit 176 (304)
T 1o5z_A 119 LNELDKEEIFSPSFFEVVTAMAFLYFAEKNVDIAVLEVGLGGRLDATNVVFPLCSTIV 176 (304)
T ss_dssp HHHHTTSTTTCCCHHHHHHHHHHHHHHHTTCSEEEEECSSSSTTCGGGGCCCSCEEEC
T ss_pred HHHHHCCCCCCCCHHHHHHHHHHHHHHHCCCCEEEEECCCCCCCCCCCCCCHHHHEEC
T ss_conf 6654115778898999999999999765148788654245421024440333342012
No 56
>>3e70_C DPA, signal recognition particle receptor; FTSY, SRP-GTPase, protein-targeting, transport protein; HET: GDP; 1.97A {Pyrococcus furiosus} PDB: 3dmd_B 3dm9_B* (C:115-314)
Probab=88.10 E-value=0.46 Score=27.76 Aligned_cols=29 Identities=21% Similarity=0.296 Sum_probs=26.7
Q ss_pred ECCCCCCHHHHHHHHHHHHCCCCEEEEEE
Q ss_conf 07888748999999998524731598760
Q gi|254780401|r 54 MGGTGKTPTALAIAKAVIDKNLKPGFLSR 82 (338)
Q Consensus 54 vGGtGKTP~v~~l~~~l~~~g~~~~ilsR 82 (338)
-.|+|||-+...|+++++..|.++++++-
T Consensus 23 p~GaGKTTli~~L~~~l~~~~g~v~i~~~ 51 (200)
T 3e70_C 23 FNGSGKTTTIAKLANWLKNHGFSVVIAAS 51 (200)
T ss_dssp CTTSSHHHHHHHHHHHHHHTTCCEEEEEE
T ss_pred CCCCCCCCHHHHHHHHHHHCCCCCEEEEC
T ss_conf 87787543089999999966986236523
No 57
>>3hn7_A UDP-N-acetylmuramate-L-alanine ligase; YP_263340.1, structural genomics, joint center for structural genomics, JCSG; HET: MSE; 1.65A {Psychrobacter arcticus 273-4} (A:120-374)
Probab=87.06 E-value=0.71 Score=26.40 Aligned_cols=39 Identities=33% Similarity=0.402 Sum_probs=33.4
Q ss_pred CCCEEEECCEEECCCCCCHHHHHHHHHHHHCCCCEEEEEECCC
Q ss_conf 8988998230007888748999999998524731598760457
Q gi|254780401|r 43 PIPVICVGGFVMGGTGKTPTALAIAKAVIDKNLKPGFLSRGYG 85 (338)
Q Consensus 43 ~~pVI~VGNitvGGtGKTP~v~~l~~~l~~~g~~~~ilsRGYg 85 (338)
++|||+| +|=-|||-++.+|+..|++.|++++..+-+.-
T Consensus 2 ~~~vI~V----tGT~GKtst~~~i~~iL~~~G~~~~~~~s~~~ 40 (255)
T 3hn7_A 2 SRHVIAV----AGTHGKTTTTTXLAWILHYAGIDAGFLIGGVP 40 (255)
T ss_dssp GSEEEEE----ECSSCHHHHHHHHHHHHHHTTCCCEEECSCCB
T ss_pred CCCEEEE----ECCCCCHHHHHHHHHHHHHCCCCCEEEECCCC
T ss_conf 7848999----55888555999999999974998639975702
No 58
>>1ls1_A Signal recognition particle protein; FFH, SRP54, SRP, GTPase, ultrahigh resolution, protein transport; 1.10A {Thermus aquaticus} (A:93-277)
Probab=87.04 E-value=0.54 Score=27.25 Aligned_cols=35 Identities=31% Similarity=0.333 Sum_probs=29.1
Q ss_pred EEEECCEEECCCCCCHHHHHHHHHHHHCCCCEEEEEEC
Q ss_conf 89982300078887489999999985247315987604
Q gi|254780401|r 46 VICVGGFVMGGTGKTPTALAIAKAVIDKNLKPGFLSRG 83 (338)
Q Consensus 46 VI~VGNitvGGtGKTP~v~~l~~~l~~~g~~~~ilsRG 83 (338)
|+.+|- -|+|||-++--++.++..+|.+++|++.-
T Consensus 9 v~i~G~---~GsGKTT~i~kl~~~~~~~~~~v~ii~~d 43 (185)
T 1ls1_A 9 WFLVGL---QGSGKTTTAAKLALYYKGKGRRPLLVAAD 43 (185)
T ss_dssp EEEECC---TTTTHHHHHHHHHHHHHHTTCCEEEEECC
T ss_pred EEEECC---CCCCCHHHHHHHHHHHHHCCCEEEEEECC
T ss_conf 999678---88871227999999998669867888424
No 59
>>2z4s_A Chromosomal replication initiator protein DNAA; AAA+ ATPase, domain III (ATPase domain), ATP-binding, cytoplasm, DNA replication; HET: ADP; 3.00A {Thermotoga maritima} PDB: 2z4r_A* (A:1-262)
Probab=86.25 E-value=0.47 Score=27.69 Aligned_cols=31 Identities=29% Similarity=0.426 Sum_probs=19.2
Q ss_pred CCCEEEECCEEECCCCCCHHHHHHHHHHHHCCCC
Q ss_conf 8988998230007888748999999998524731
Q gi|254780401|r 43 PIPVICVGGFVMGGTGKTPTALAIAKAVIDKNLK 76 (338)
Q Consensus 43 ~~pVI~VGNitvGGtGKTP~v~~l~~~l~~~g~~ 76 (338)
+..++-.|.- |||||=++.++++.+...+..
T Consensus 130 ~~~~ll~Gpp---GtGKT~La~aia~~~~~~~~~ 160 (262)
T 2z4s_A 130 YNPLFIYGGV---GLGKTHLLQSIGNYVVQNEPD 160 (262)
T ss_dssp SCCEEEECSS---SSSHHHHHHHHHHHHHHHCCS
T ss_pred CCCEEEECCC---CCCHHHHHHHHHHHHHHCCCC
T ss_conf 7856997687---756159999999999851984
No 60
>>3cmw_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 2.80A {Escherichia coli} PDB: 3cmt_A* 3cmx_A* 3cmv_A* (A:361-593,A:665-705)
Probab=86.14 E-value=0.58 Score=27.05 Aligned_cols=27 Identities=22% Similarity=0.324 Sum_probs=25.0
Q ss_pred CCCCCCHHHHHHHHHHHHCCCCEEEEE
Q ss_conf 788874899999999852473159876
Q gi|254780401|r 55 GGTGKTPTALAIAKAVIDKNLKPGFLS 81 (338)
Q Consensus 55 GGtGKTP~v~~l~~~l~~~g~~~~ils 81 (338)
-|||||-+++.++......|.+++.++
T Consensus 32 pGsGKTtL~Lql~~~~~~~g~~vlyId 58 (274)
T 3cmw_A 32 ESSGKTTLTLQVIAAAQREGKTCAFID 58 (274)
T ss_dssp TTSSHHHHHHHHHHHHHHTTCCEEEEC
T ss_pred CCCCCHHHHHHHHHHHHHCCCEEEEEC
T ss_conf 877810247998888886588489942
No 61
>>3e2i_A Thymidine kinase; Zn-binding, ATP-binding, DNA synthesis, nucleotide- binding, transferase; HET: MSE; 2.01A {Staphylococcus aureus} (A:1-167)
Probab=86.11 E-value=1.8 Score=23.48 Aligned_cols=72 Identities=13% Similarity=0.091 Sum_probs=41.1
Q ss_pred CCCCCCHHHHHHHHHHHHCCCCEEEEEECCCCCCCCCEEEECCCCCHHHHCCHHHHHHHCC--CCCCCCCHHHHHHHHCC
Q ss_conf 7888748999999998524731598760457877775587145678877042123322057--63465201225664102
Q gi|254780401|r 55 GGTGKTPTALAIAKAVIDKNLKPGFLSRGYGRKSRISFRVDLEKHSAYDVGDEPLLLARRA--VTIVTSDRKIGVQMLLQ 132 (338)
Q Consensus 55 GGtGKTP~v~~l~~~l~~~g~~~~ilsRGYg~~~~~~~~v~~~~~~~~~vGDEp~lla~~~--pv~V~~~R~~~~~~~~~ 132 (338)
=|+|||-..+-.++.+...|.++.++.-+.--+......+ .+.. -....-+....+.....
T Consensus 37 m~sGKTt~Ll~~~~~~~~~g~kvivikp~~D~R~~~~~i~-----------------s~~g~~~~~~~i~~~~~i~~~~~ 99 (167)
T 3e2i_A 37 XFSGKSEELIRRLRRGIYAKQKVVVFKPAIDDRYHKEKVV-----------------SHNGNAIEAINISKASEIXTHDL 99 (167)
T ss_dssp TTSCHHHHHHHHHHHHHHTTCCEEEEEEC----------------------------CBTTBCCEEEEESSGGGGGGSCC
T ss_pred CCCHHHHHHHHHHHHHHHCCCEEEEEEECCCCCCCCCCEE-----------------CCCCCCCEEEECCCHHHHHHHHC
T ss_conf 0773899999999999988996999925455507999777-----------------36898106576187789998643
Q ss_pred CCCCEEEECCC
Q ss_conf 45747997183
Q gi|254780401|r 133 EGVDIIIMDDG 143 (338)
Q Consensus 133 ~~~diiIlDDG 143 (338)
..+|+|+.|++
T Consensus 100 ~~~dvI~IDEa 110 (167)
T 3e2i_A 100 TNVDVIGIDEV 110 (167)
T ss_dssp TTCSEEEECCG
T ss_pred CCCCEEEEECH
T ss_conf 47999999814
No 62
>>3cmw_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 2.80A {Escherichia coli} PDB: 3cmt_A* 3cmx_A* 3cmv_A* (A:1056-1292,A:1363-1404)
Probab=85.84 E-value=0.61 Score=26.88 Aligned_cols=27 Identities=22% Similarity=0.324 Sum_probs=24.6
Q ss_pred CCCCCCHHHHHHHHHHHHCCCCEEEEE
Q ss_conf 788874899999999852473159876
Q gi|254780401|r 55 GGTGKTPTALAIAKAVIDKNLKPGFLS 81 (338)
Q Consensus 55 GGtGKTP~v~~l~~~l~~~g~~~~ils 81 (338)
=|||||-+++.++...+..|.+++.++
T Consensus 36 pgsGKTtlal~~~~~~~~~g~~vlyID 62 (279)
T 3cmw_A 36 ESSGKTTLTLQVIAAAQREGKTCAFID 62 (279)
T ss_dssp TTSSHHHHHHHHHHHHHHTTCCEEEEC
T ss_pred CCCCCHHHHHHHHHHHHHCCCEEEEEC
T ss_conf 877804599999999986288479941
No 63
>>1nks_A Adenylate kinase; thermophilic, transferase; HET: AMP ADP; 2.57A {Sulfolobus acidocaldarius} (A:)
Probab=85.28 E-value=0.62 Score=26.81 Aligned_cols=32 Identities=13% Similarity=0.212 Sum_probs=28.8
Q ss_pred CCCCCCHHHHHHHHHHHHCCCCEEEEEECCCC
Q ss_conf 78887489999999985247315987604578
Q gi|254780401|r 55 GGTGKTPTALAIAKAVIDKNLKPGFLSRGYGR 86 (338)
Q Consensus 55 GGtGKTP~v~~l~~~l~~~g~~~~ilsRGYg~ 86 (338)
-|+|||-++..|++.|...|..+..++++...
T Consensus 10 ~GsGKTT~a~~L~~~l~~~~~~~~~~~~~~~~ 41 (194)
T 1nks_A 10 PGVGKSTVLAKVKEILDNQGINNKIINYGDFM 41 (194)
T ss_dssp TTSCHHHHHHHHHHHHHTTTCCEEEEEHHHHH
T ss_pred CCCCHHHHHHHHHHHHHHCCCCEEEEECCCCH
T ss_conf 99698999999999998769987999789831
No 64
>>3cmw_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 2.80A {Escherichia coli} PDB: 3cmt_A* 3cmx_A* 3cmv_A* (A:1-244,A:316-360)
Probab=84.90 E-value=0.76 Score=26.21 Aligned_cols=27 Identities=22% Similarity=0.324 Sum_probs=24.9
Q ss_pred CCCCCCHHHHHHHHHHHHCCCCEEEEE
Q ss_conf 788874899999999852473159876
Q gi|254780401|r 55 GGTGKTPTALAIAKAVIDKNLKPGFLS 81 (338)
Q Consensus 55 GGtGKTP~v~~l~~~l~~~g~~~~ils 81 (338)
-|||||-+++-++...+..|.+++.++
T Consensus 43 pGsGKTtL~Lq~~~~~~~~g~~viyid 69 (289)
T 3cmw_A 43 ESSGKTTLTLQVIAAAQREGKTCAFID 69 (289)
T ss_dssp TTSSHHHHHHHHHHHHHHTTCCEEEEC
T ss_pred CCCCCCEEEHHHHHHHHHCCCEEEEEC
T ss_conf 667871560367777764488037732
No 65
>>2wtz_A UDP-N-acetylmuramoyl-L-alanyl-D-glutamate- -2,6-diaminopimelate ligase; nucleotide-binding, peptidoglycan synthesis, MURE, cytoplasm; HET: KCX UAG; 3.00A {Mycobacterium tuberculosis} (A:128-368)
Probab=84.80 E-value=2.7 Score=22.26 Aligned_cols=43 Identities=19% Similarity=0.235 Sum_probs=35.0
Q ss_pred CCCCCCCCCEEEECCEEECCCCCCHHHHHHHHHHHHCCCCEEEEEEC
Q ss_conf 46433889889982300078887489999999985247315987604
Q gi|254780401|r 37 GQRLHAPIPVICVGGFVMGGTGKTPTALAIAKAVIDKNLKPGFLSRG 83 (338)
Q Consensus 37 ~~~~~~~~pVI~VGNitvGGtGKTP~v~~l~~~l~~~g~~~~ilsRG 83 (338)
......+.|||+| +|=.|||-++.+|+..|+..|++++..+-+
T Consensus 12 l~~~~~~~~vI~V----tGT~GKTTt~~li~~iL~~~g~~~~~~~s~ 54 (241)
T 2wtz_A 12 YGHPSERLTVIGI----TGTSGKTTTTYLVEAGLRAAGRVAGLIGTI 54 (241)
T ss_dssp TTCGGGSSEEEEE----ESSSCHHHHHHHHHHHHHHTTCCEEEESSS
T ss_pred HCCCCCCCCEEEE----ECCCCHHHHHHHHHHHHHHCCCCCEECCCC
T ss_conf 6683127858999----799988999999999986245543002554
No 66
>>2am1_A SP protein, UDP-N-acetylmuramoylalanine-D-glutamyl-lysine-D- alanyl-D-alanine ligase, MURF protein...; HET: 1LG; 2.50A {Streptococcus pneumoniae R6} PDB: 2am2_A* (A:82-305)
Probab=84.77 E-value=0.71 Score=26.38 Aligned_cols=40 Identities=23% Similarity=0.273 Sum_probs=30.4
Q ss_pred CCCCEEEECCEEECCCCCCHHHHHHHHHHHHCCCCEEEEEECCCC
Q ss_conf 889889982300078887489999999985247315987604578
Q gi|254780401|r 42 APIPVICVGGFVMGGTGKTPTALAIAKAVIDKNLKPGFLSRGYGR 86 (338)
Q Consensus 42 ~~~pVI~VGNitvGGtGKTP~v~~l~~~l~~~g~~~~ilsRGYg~ 86 (338)
...|||+| .|--|||.++.+|...|++.|++++.. .+++.
T Consensus 17 ~~~~vi~V----tGT~GKTTt~~li~~iL~~~g~~~~~~-~~~~~ 56 (224)
T 2am1_A 17 TTVDVFAV----TGSNGKTTTKDXLAHLLSTRYKTYKTQ-GNYNN 56 (224)
T ss_dssp HCCEEEEE----ECCCSSSCHHHHHHHHHTTTSCEEECC-TTCCS
T ss_pred CCCCEEEE----CCCCHHHHHHHHHHHHHHHCCCCEEEC-CCCCC
T ss_conf 56506996----242011477799999988616735405-86035
No 67
>>2ocp_A DGK, deoxyguanosine kinase; protein-nucleotide complex, transferase; HET: DTP; 2.80A {Homo sapiens} (A:)
Probab=83.91 E-value=0.41 Score=28.10 Aligned_cols=40 Identities=10% Similarity=0.143 Sum_probs=32.6
Q ss_pred EEEE-CCEEECCCCCCHHHHHHHHHHHHCCCCEEEEEECCCCCC
Q ss_conf 8998-230007888748999999998524731598760457877
Q gi|254780401|r 46 VICV-GGFVMGGTGKTPTALAIAKAVIDKNLKPGFLSRGYGRKS 88 (338)
Q Consensus 46 VI~V-GNitvGGtGKTP~v~~l~~~l~~~g~~~~ilsRGYg~~~ 88 (338)
+|+| |+. |+|||-++..|++.|...++.++.+.|.+....
T Consensus 4 iI~i~G~~---GsGKsT~a~~L~~~l~~~~~~~~~~~~~~~~~~ 44 (241)
T 2ocp_A 4 RLSIEGNI---AVGKSTFVKLLTKTYPEWHVATEPVATWQNIQA 44 (241)
T ss_dssp EEEEEECT---TSSHHHHHHHHHHHCTTSEEECCCGGGTSCCC-
T ss_pred EEEEECCC---CCCHHHHHHHHHHHHHHCCCEECCCCCCCEEEC
T ss_conf 89998999---886999999999987304874134575321455
No 68
>>2eyu_A Twitching motility protein PILT; pilus retraction motor, C-terminal domain PILT, protein transport; 1.87A {Aquifex aeolicus} (A:)
Probab=83.63 E-value=3.4 Score=21.58 Aligned_cols=35 Identities=17% Similarity=0.209 Sum_probs=24.8
Q ss_pred ECCEEE---CCCCCCHHHHHHHHHHHH-CCCCEEEEEEC
Q ss_conf 823000---788874899999999852-47315987604
Q gi|254780401|r 49 VGGFVM---GGTGKTPTALAIAKAVID-KNLKPGFLSRG 83 (338)
Q Consensus 49 VGNitv---GGtGKTP~v~~l~~~l~~-~g~~~~ilsRG 83 (338)
-||+.+ .|+|||-+.-+|++++.. .+.++.++..-
T Consensus 25 ~g~ili~GptGsGKTTll~al~~~~~~~~~~~v~~iEd~ 63 (261)
T 2eyu_A 25 XGLILVTGPTGSGKSTTIASXIDYINQTKSYHIITIEDP 63 (261)
T ss_dssp SEEEEEECSTTCSHHHHHHHHHHHHHHHCCCEEEEEESS
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHHHHHCCCCEEECCCC
T ss_conf 987999899999799999999997456436442203433
No 69
>>1nn5_A Similar to deoxythymidylate kinase (thymidylate kinase); P-loop, D4TMP, transferase; HET: 2DT ANP; 1.50A {Homo sapiens} (A:)
Probab=83.55 E-value=1.9 Score=23.32 Aligned_cols=41 Identities=12% Similarity=0.140 Sum_probs=33.1
Q ss_pred CCEEEECCEEECCCCCCHHHHHHHHHHHHCCCCEEEEEECCCCC
Q ss_conf 98899823000788874899999999852473159876045787
Q gi|254780401|r 44 IPVICVGGFVMGGTGKTPTALAIAKAVIDKNLKPGFLSRGYGRK 87 (338)
Q Consensus 44 ~pVI~VGNitvGGtGKTP~v~~l~~~l~~~g~~~~ilsRGYg~~ 87 (338)
.-|+..|. -|+|||-++..|++.|...++.+.+++|.....
T Consensus 10 ~~I~i~G~---~GsGKST~a~~La~~l~~~~~~~~~~~~~~~~~ 50 (215)
T 1nn5_A 10 ALIVLEGV---DRAGKSTQSRKLVEALCAAGHRAELLRFPERST 50 (215)
T ss_dssp CEEEEEES---TTSSHHHHHHHHHHHHHHTTCCEEEEESSCTTS
T ss_pred EEEEEECC---CCCCHHHHHHHHHHHHHHCCCCEEEEECCCCCC
T ss_conf 49999899---888899999999999986799669996489986
No 70
>>3dmq_A RNA polymerase-associated protein RAPA; SWF2/SNF2, transcription factor, RNA polymerase recycling, activator, ATP-binding, DNA-binding; 3.20A {Escherichia coli K12} (A:150-424,A:686-712)
Probab=83.34 E-value=0.77 Score=26.17 Aligned_cols=27 Identities=22% Similarity=0.090 Sum_probs=20.1
Q ss_pred CCCCCCHHHHHHHHHHHHCC--CCEEEEE
Q ss_conf 78887489999999985247--3159876
Q gi|254780401|r 55 GGTGKTPTALAIAKAVIDKN--LKPGFLS 81 (338)
Q Consensus 55 GGtGKTP~v~~l~~~l~~~g--~~~~ils 81 (338)
=|+|||=+++.++..+...| .++.||.
T Consensus 30 ~G~GKT~~ai~~~~~l~~~~~~~~vLIv~ 58 (302)
T 3dmq_A 30 VGLGKTIEAGXILHQQLLSGAAERVLIIV 58 (302)
T ss_dssp TTSCHHHHHHHHHHHHHHTSSCCCEEEEC
T ss_pred CCHHHHHHHHHHHHHHHHHCCCCCEEEEE
T ss_conf 96359999999999999838999689998
No 71
>>3do6_A Formate--tetrahydrofolate ligase; TM1766, putative formyltetrahydrofolate synthetase, structural genomics; HET: MSE; 1.85A {Thermotoga maritima} (A:1-111,A:240-423)
Probab=82.94 E-value=1.9 Score=23.38 Aligned_cols=196 Identities=17% Similarity=0.235 Sum_probs=103.2
Q ss_pred CCCCCEEEECCEEE--CCCCCCHHHHHHHHHHHHCCCCEEEEEECC--------CCCC--CCCEEEECCCCCHHHHCCHH
Q ss_conf 38898899823000--788874899999999852473159876045--------7877--77558714567887704212
Q gi|254780401|r 41 HAPIPVICVGGFVM--GGTGKTPTALAIAKAVIDKNLKPGFLSRGY--------GRKS--RISFRVDLEKHSAYDVGDEP 108 (338)
Q Consensus 41 ~~~~pVI~VGNitv--GGtGKTP~v~~l~~~l~~~g~~~~ilsRGY--------g~~~--~~~~~v~~~~~~~~~vGDEp 108 (338)
..+..+|.|-.++- ||-|||-+++-|+..|.+.|+++.+--|.= .+.. .|...+.+.. +.-=-|
T Consensus 40 ~~~~k~IlVTSi~PtkgGEGKSTvsiNLA~aLA~~GkkVllDLR~PSl~~~fGikg~a~~~Gls~vLp~e----diA~~P 115 (295)
T 3do6_A 40 HEDGKLILVTAVTPTPAGEGKTTTSIGLSXSLNRIGKKSIVTLREPSLGPTLGLKGGATGGGRSRVLPSD----EIAINP 115 (295)
T ss_dssp SCCCEEEEEEESSCCTTCCCHHHHHHHHHHHHHHTTCCEEEEECCCCHHHHHHSCCSTTEETTEEEESHH----HHTTSC
T ss_pred CCCCEEEEEEECCCCCCCCCCCCCHHHHHHHHHHHCCCEEEEEECCCCCCCCCCCCCCCCCCCEEEEECH----HHHHHH
T ss_conf 8995699997368888889851119989999875376336897257778720555666777721566205----637676
Q ss_pred HHHHH--CCC----------CCCCCCHHHHHHHHCCCCCCEEEECCCCCCCCCCCEEEEEEECCCCCCCCCCCCCCHHHH
Q ss_conf 33220--576----------346520122566410245747997183223441230699996184335665537613652
Q gi|254780401|r 109 LLLAR--RAV----------TIVTSDRKIGVQMLLQEGVDIIIMDDGFHSADLQADFSLIVVNSHRGLGNGLVFPAGPLR 176 (338)
Q Consensus 109 ~lla~--~~p----------v~V~~~R~~~~~~~~~~~~diiIlDDGfQh~~l~rdl~Ivl~d~~~~~gn~~llPaGpLR 176 (338)
-|... ..| +.-+.+-..|-+.+.+. .|++|-.-| ||-+
T Consensus 116 nlvqt~e~tp~~vHgGPFaNIAhG~nSviat~~al~l-~dyvvtEaG--------------------fgaD--------- 165 (295)
T 3do6_A 116 NLVQTTEGTPALIHCGPFANIAHGTNSIIATKXAXKL-SEYTVTEAG--------------------FGAD--------- 165 (295)
T ss_dssp EEEEETTSCEEEECCCCCSSSSCCBCCHHHHHHHHHH-CSEEEEEBS--------------------SSTT---------
T ss_pred HHHHHCCCCCEEECCCCCCCCCCCCCHHHHHHHHHHH-CCEEEEEEC--------------------CCCC---------
T ss_conf 7660025885455167531212575389999998851-676996301--------------------3677---------
Q ss_pred HCCHHHHHHHHHHHHCCCCHHHHHHHCCCCHHHHHH---HH---CCCCCCCCCEEEEE-ECCCCHHHHHHHHHHHCCCCC
Q ss_conf 100255665145442044124577631350111222---20---13211168638987-415535789998874010000
Q gi|254780401|r 177 VPLSRQLSYVDAILYVGNKKNVISSIKNKSVYFAKL---KP---RLTFDLSGKKVLAF-SGIADTEKFFTTVRQLGALIE 249 (338)
Q Consensus 177 Ep~~~~l~rad~vi~~~~~~~~~~~~~~~~i~~~~~---~~---~~~~~l~~k~v~af-sGIa~P~~F~~~L~~~g~~i~ 249 (338)
+- +-|-.|+..-. .... +..-+..+.. +. ....++...++-++ .|..|=++-.+.++++|..++
T Consensus 166 --lG-aeKf~dikcr~----~g~~--p~~~vlvat~ralk~hgg~~~~~~~~~n~~a~~~G~~nl~~hi~n~~~~g~~~v 236 (295)
T 3do6_A 166 --LG-AEKFIDFVSRV----GGFY--PNAAVLVATVRALKYHGGANLKNIHEENLEALKEGFKNLRVHVENLRKFNLPVV 236 (295)
T ss_dssp --TH-HHHHHHTHHHH----HTCC--CSEEEEEECHHHHHHHTTCCGGGTTSCCHHHHHHHHHHHHHHHHHHHHTTCCEE
T ss_pred --CC-CHHHCCCCCCC----CCCC--CCEEEEEEEECHHHCCCCCCHHHCCCCCHHHHHHHHHHHHHHHHHHHHCCCCEE
T ss_conf --67-45334765257----8898--753899986001004799984774740899998676679999875665089826
Q ss_pred CCC-CCCCCCCCCHHHHHHHHHHHHHCCCE-EEEC
Q ss_conf 122-14332348989999999975647987-9985
Q gi|254780401|r 250 QCY-SFGDHAHLSDKKIAYLLDQAQQKGLI-LVTT 282 (338)
Q Consensus 250 ~~~-~fpDHh~ys~~dl~~i~~~a~~~~~~-iiTT 282 (338)
-.+ .|++- |+.+++.+.+.+++.+.. .+++
T Consensus 237 vaiN~f~~D---t~~Ei~~~~~~~~~~g~~~~~~~ 268 (295)
T 3do6_A 237 VALNRFSTD---TEKEIAYVVKECEKLGVRVAVSE 268 (295)
T ss_dssp EEEECCTTC---CHHHHHHHHHHHHTTTCEEEEEC
T ss_pred ECCCCCCCC---CHHHHHHHHHHHHHCCCCCEECC
T ss_conf 646888876---27789999999876387512225
No 72
>>3b9q_A Chloroplast SRP receptor homolog, alpha subunit CPFTSY; protein translocation, GTP-binding, nucleotide-binding, protein transport; 1.75A {Arabidopsis thaliana} (A:93-292)
Probab=82.91 E-value=1 Score=25.31 Aligned_cols=35 Identities=23% Similarity=0.334 Sum_probs=28.9
Q ss_pred EEEECCEEECCCCCCHHHHHHHHHHHHCCCCEEEEEEC
Q ss_conf 89982300078887489999999985247315987604
Q gi|254780401|r 46 VICVGGFVMGGTGKTPTALAIAKAVIDKNLKPGFLSRG 83 (338)
Q Consensus 46 VI~VGNitvGGtGKTP~v~~l~~~l~~~g~~~~ilsRG 83 (338)
|+.+| .+|+|||-.+-.++-.+..+|.+++|+.-.
T Consensus 11 iii~G---~tG~GKTT~ipq~~~~~~~~g~~~~i~~~d 45 (200)
T 3b9q_A 11 IMIVG---VNGGGKTTSLGKLAHRLKNEGTKVLMAAGD 45 (200)
T ss_dssp EEEEC---CTTSCHHHHHHHHHHHHHHTTCCEEEECCC
T ss_pred EEECC---CCCCCCHHHHHHHHHHHHHCCCCCEEEEEC
T ss_conf 99616---655541157999999998558874157512
No 73
>>2og2_A Putative signal recognition particle receptor; nucleotide-binding, protein transport; 2.00A {Arabidopsis thaliana} (A:150-349)
Probab=82.91 E-value=1 Score=25.31 Aligned_cols=35 Identities=23% Similarity=0.334 Sum_probs=28.9
Q ss_pred EEEECCEEECCCCCCHHHHHHHHHHHHCCCCEEEEEEC
Q ss_conf 89982300078887489999999985247315987604
Q gi|254780401|r 46 VICVGGFVMGGTGKTPTALAIAKAVIDKNLKPGFLSRG 83 (338)
Q Consensus 46 VI~VGNitvGGtGKTP~v~~l~~~l~~~g~~~~ilsRG 83 (338)
|+.+| .+|+|||-.+-.++-.+..+|.+++|+.-.
T Consensus 11 iii~G---~tG~GKTT~ipq~~~~~~~~g~~~~i~~~d 45 (200)
T 2og2_A 11 IMIVG---VNGGGKTTSLGKLAHRLKNEGTKVLMAAGD 45 (200)
T ss_dssp EEEEC---CTTSCHHHHHHHHHHHHHHTTCCEEEECCC
T ss_pred EEEEC---CCCHHHHHHHHHHHHHHHHHHCCCEEEEEE
T ss_conf 99705---531366778999999998610465057740
No 74
>>3cmu_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 4.20A {Escherichia coli} (A:1-244,A:315-356)
Probab=82.85 E-value=0.86 Score=25.81 Aligned_cols=27 Identities=22% Similarity=0.324 Sum_probs=24.6
Q ss_pred CCCCCCHHHHHHHHHHHHCCCCEEEEE
Q ss_conf 788874899999999852473159876
Q gi|254780401|r 55 GGTGKTPTALAIAKAVIDKNLKPGFLS 81 (338)
Q Consensus 55 GGtGKTP~v~~l~~~l~~~g~~~~ils 81 (338)
-|||||-+++-++......|.+++.++
T Consensus 43 pGsGKTtl~lq~~~~~~~~g~~viyid 69 (286)
T 3cmu_A 43 ESSGKTTLTLQVIAAAQREGKTCAFID 69 (286)
T ss_dssp TTSSHHHHHHHHHHHHHTTTCCEEEEC
T ss_pred CCCCCCEEEEHHHHHHHHCCCCEEEEC
T ss_conf 767850476134567763587025632
No 75
>>3cmu_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 4.20A {Escherichia coli} (A:1055-1291,A:1361-1404)
Probab=82.72 E-value=2.5 Score=22.47 Aligned_cols=27 Identities=22% Similarity=0.324 Sum_probs=24.8
Q ss_pred CCCCCCHHHHHHHHHHHHCCCCEEEEE
Q ss_conf 788874899999999852473159876
Q gi|254780401|r 55 GGTGKTPTALAIAKAVIDKNLKPGFLS 81 (338)
Q Consensus 55 GGtGKTP~v~~l~~~l~~~g~~~~ils 81 (338)
-|||||-+++.++...+..|.+++.++
T Consensus 36 pGsGKTtLaL~~~~~~~~~g~~vlyID 62 (281)
T 3cmu_A 36 ESSGKTTLTLQVIAAAQREGKTCAFID 62 (281)
T ss_dssp TTSSHHHHHHHHHHHHHTTTCCEEEEC
T ss_pred CCCCCEEEEEEECCHHHHCCCCHHHCC
T ss_conf 778847886410373332355101000
No 76
>>2gza_A Type IV secretion system protein VIRB11; ATPase, hydrolase; 2.60A {Brucella suis 1330} (A:144-361)
Probab=82.38 E-value=3.8 Score=21.26 Aligned_cols=29 Identities=17% Similarity=0.074 Sum_probs=22.4
Q ss_pred CCCCCCHHHHHHHHHHHHCCCCEEEEEECC
Q ss_conf 788874899999999852473159876045
Q gi|254780401|r 55 GGTGKTPTALAIAKAVIDKNLKPGFLSRGY 84 (338)
Q Consensus 55 GGtGKTP~v~~l~~~l~~~g~~~~ilsRGY 84 (338)
.|+|||.+..+|+..+... .++.++-...
T Consensus 41 tgSGKTT~l~aL~~~~~~~-~~iv~iEd~~ 69 (218)
T 2gza_A 41 TGSGKTTLMKALMQEIPFD-QRLITIEDVP 69 (218)
T ss_dssp SSSCHHHHHHHHHTTSCTT-SCEEEEESSS
T ss_pred CCCCHHHHHHHHHHHHHHC-CCEEEEECCH
T ss_conf 9886689999999764213-5505750544
No 77
>>1wrb_A DJVLGB; RNA helicase, DEAD BOX, VASA, structural genomics, NPPSFA, national project on protein structural and functional analyses; 2.40A {Dugesia japonica} (A:)
Probab=82.35 E-value=1.6 Score=23.99 Aligned_cols=103 Identities=13% Similarity=0.110 Sum_probs=59.7
Q ss_pred CCCCCC-HHHHHHHHHHHHCCCCEEEEEECCCCCCCCCEEEECCCCCHHHHCCHHHHHHHCCC----CCCCCCHHHHHHH
Q ss_conf 788874-89999999985247315987604578777755871456788770421233220576----3465201225664
Q gi|254780401|r 55 GGTGKT-PTALAIAKAVIDKNLKPGFLSRGYGRKSRISFRVDLEKHSAYDVGDEPLLLARRAV----TIVTSDRKIGVQM 129 (338)
Q Consensus 55 GGtGKT-P~v~~l~~~l~~~g~~~~ilsRGYg~~~~~~~~v~~~~~~~~~vGDEp~lla~~~p----v~V~~~R~~~~~~ 129 (338)
=||||| -+++-+.+.+......... .+....-..+++.+...-+.++.+|-..+....+ .+.+.........
T Consensus 69 TGSGKTlayllPil~~l~~~~~~~~~---~~~~~~~~alvl~PTrELa~Qi~~~~~~~~~~~~~~~~~~~g~~~~~~~~~ 145 (253)
T 1wrb_A 69 TGSGKTAAFLIPIINHLVCQDLNQQR---YSKTAYPKCLILAPTRELAIQILSESQKFSLNTPLRSCVVYGGADTHSQIR 145 (253)
T ss_dssp TTSSHHHHHHHHHHHHHHTTCC---------CCBCCSEEEECSSHHHHHHHHHHHHHHHTTSSCCEEEECSSSCSHHHHH
T ss_pred CCCCCCEEEHHHHHHHHHHCCCCCCC---CCCCCCCEEEEECCCHHHHCCHHHHHHHHCCCCCCEEEEEECCCCHHHHHH
T ss_conf 87554055388899998722222223---466788469995461553010122110002578846999834510046766
Q ss_pred HCCCCCCEEEECCC-----C-CCCCCCCEEEEEEECC
Q ss_conf 10245747997183-----2-2344123069999618
Q gi|254780401|r 130 LLQEGVDIIIMDDG-----F-HSADLQADFSLIVVNS 160 (338)
Q Consensus 130 ~~~~~~diiIlDDG-----f-Qh~~l~rdl~Ivl~d~ 160 (338)
....+++++|..-| . .+.---+++..+++|-
T Consensus 146 ~~~~~~~ilv~Tpgrl~~~~~~~~~~l~~ik~lVlDE 182 (253)
T 1wrb_A 146 EVQMGCHLLVATPGRLVDFIEKNKISLEFCKYIVLDE 182 (253)
T ss_dssp HHSSCCSEEEECHHHHHHHHHTTSBCCTTCCEEEEET
T ss_pred HHCCCCCEEEECHHHHHHHHCCCCEECCCCCEEEEEE
T ss_conf 4026874477267998776616816635540588873
No 78
>>1xp8_A RECA protein, recombinase A; recombination, radioresistance, DNA-repair, ATPase, DNA- binding protein, DNA binding protein; HET: SAP; 2.50A {Deinococcus radiodurans} (A:71-285)
Probab=82.21 E-value=1.2 Score=24.71 Aligned_cols=27 Identities=30% Similarity=0.298 Sum_probs=25.4
Q ss_pred CCCCCCHHHHHHHHHHHHCCCCEEEEE
Q ss_conf 788874899999999852473159876
Q gi|254780401|r 55 GGTGKTPTALAIAKAVIDKNLKPGFLS 81 (338)
Q Consensus 55 GGtGKTP~v~~l~~~l~~~g~~~~ils 81 (338)
-|||||-+++.++-...++|.++..+|
T Consensus 13 pGsGKT~l~lq~~~~~~~~G~~vlyis 39 (215)
T 1xp8_A 13 ESGGKTTLALAIVAQAQKAGGTCAFID 39 (215)
T ss_dssp TTSSHHHHHHHHHHHHHHTTCCEEEEE
T ss_pred CCCCHHHHHHHHHHHHHCCCCEEEEEE
T ss_conf 774068999999999960798089980
No 79
>>3cmw_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 2.80A {Escherichia coli} PDB: 3cmt_A* 3cmx_A* 3cmv_A* (A:706-942,A:1014-1055)
Probab=81.33 E-value=1.2 Score=24.76 Aligned_cols=27 Identities=22% Similarity=0.324 Sum_probs=24.6
Q ss_pred CCCCCCHHHHHHHHHHHHCCCCEEEEE
Q ss_conf 788874899999999852473159876
Q gi|254780401|r 55 GGTGKTPTALAIAKAVIDKNLKPGFLS 81 (338)
Q Consensus 55 GGtGKTP~v~~l~~~l~~~g~~~~ils 81 (338)
-|||||-+++-++......|.+++.++
T Consensus 36 pGsGKT~lal~~~~~~~~~g~~viyID 62 (279)
T 3cmw_A 36 ESSGKTTLTLQVIAAAQREGKTCAFID 62 (279)
T ss_dssp TTSSHHHHHHHHHHHHHHTTCCEEEEC
T ss_pred CCCCCEEEEHHHHHHHHHCCCEEEEEC
T ss_conf 877726775887687773166345540
No 80
>>1w36_D RECD, exodeoxyribonuclease V alpha chain; recombination, helicase, hydrolase, DNA repair; HET: DNA; 3.1A {Escherichia coli} (D:111-360,D:596-608)
Probab=81.28 E-value=1.3 Score=24.61 Aligned_cols=28 Identities=29% Similarity=0.275 Sum_probs=21.6
Q ss_pred ECCCCCCHHHHHHHHHHHHCCC----CEEEEE
Q ss_conf 0788874899999999852473----159876
Q gi|254780401|r 54 MGGTGKTPTALAIAKAVIDKNL----KPGFLS 81 (338)
Q Consensus 54 vGGtGKTP~v~~l~~~l~~~g~----~~~ils 81 (338)
..|||||-+...++.+|...+. ++.+++
T Consensus 62 ppGTGKT~~l~~~i~~l~~~~~~~~~~Il~~a 93 (263)
T 1w36_D 62 GPGTGKTTTVAKLLAALIQMADGERCRIRLAA 93 (263)
T ss_dssp CTTSTHHHHHHHHHHHHHHTCSSCCCCEEEEB
T ss_pred CCCCCCCCHHHHHHHHHHHHHCCCCCEEEEEC
T ss_conf 99986403299999999997504897599973
No 81
>>2w58_A DNAI, primosome component (helicase loader); ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.50A {Geobacillus kaustophilus HTA426} (A:)
Probab=81.25 E-value=1.4 Score=24.33 Aligned_cols=36 Identities=25% Similarity=0.204 Sum_probs=29.5
Q ss_pred CCCEEEECCEEECCCCCCHHHHHHHHHHHHCCCCEEEEE
Q ss_conf 898899823000788874899999999852473159876
Q gi|254780401|r 43 PIPVICVGGFVMGGTGKTPTALAIAKAVIDKNLKPGFLS 81 (338)
Q Consensus 43 ~~pVI~VGNitvGGtGKTP~v~~l~~~l~~~g~~~~ils 81 (338)
+-.++-.|. -|||||-+..++++.+...++++..++
T Consensus 54 ~~~l~l~G~---~G~GKThLa~ai~~~~~~~~~~~~~~~ 89 (202)
T 2w58_A 54 MKGLYLHGS---FGVGKTYLLAAIANELAKRNVSSLIVY 89 (202)
T ss_dssp CCEEEEECS---TTSSHHHHHHHHHHHHHTTTCCEEEEE
T ss_pred CCEEEEECC---CCCCHHHHHHHHHHHHHHCCCCEEEEE
T ss_conf 874899899---989789999999999754257358993
No 82
>>3cmu_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 4.20A {Escherichia coli} (A:706-942,A:1014-1054)
Probab=81.21 E-value=1.1 Score=25.13 Aligned_cols=27 Identities=22% Similarity=0.324 Sum_probs=24.9
Q ss_pred CCCCCCHHHHHHHHHHHHCCCCEEEEE
Q ss_conf 788874899999999852473159876
Q gi|254780401|r 55 GGTGKTPTALAIAKAVIDKNLKPGFLS 81 (338)
Q Consensus 55 GGtGKTP~v~~l~~~l~~~g~~~~ils 81 (338)
-|||||-+++-++...+..|.+++.++
T Consensus 36 pGsGKTtl~l~~~~~~~~~g~~viyid 62 (278)
T 3cmu_A 36 ESSGKTTLTLQVIAAAQREGKTCAFID 62 (278)
T ss_dssp TTSSHHHHHHHHHHHHHTTTCCEEEEC
T ss_pred CCCCCHHHHHHHHHHHHHCCCEEEECC
T ss_conf 877703668987655553155012004
No 83
>>1kht_A Adenylate kinase; phosphotransferase, signaling protein, transferase; HET: AMP; 2.50A {Methanococcus voltae} (A:)
Probab=81.11 E-value=1 Score=25.26 Aligned_cols=32 Identities=16% Similarity=0.190 Sum_probs=28.2
Q ss_pred ECCCCCCHHHHHHHHHHHHCCCCEEEEEECCC
Q ss_conf 07888748999999998524731598760457
Q gi|254780401|r 54 MGGTGKTPTALAIAKAVIDKNLKPGFLSRGYG 85 (338)
Q Consensus 54 vGGtGKTP~v~~l~~~l~~~g~~~~ilsRGYg 85 (338)
..|+|||-++..|++.|...++....++++..
T Consensus 11 ~~GsGKtTla~~L~~~l~~~~~~~~~~~~~~~ 42 (192)
T 1kht_A 11 VPGVGSTTSSQLAMDNLRKEGVNYKMVSFGSV 42 (192)
T ss_dssp CTTSCHHHHHHHHHHHHHTTTCCCEEEEHHHH
T ss_pred CCCCCHHHHHHHHHHHHHHCCCCEEEEECCCH
T ss_conf 99969899999999999875997699867866
No 84
>>4tmk_A Protein (thymidylate kinase); ATP:DTMP phosphotransferase; HET: T5A; 1.98A {Escherichia coli} (A:)
Probab=80.98 E-value=2.6 Score=22.37 Aligned_cols=40 Identities=18% Similarity=0.250 Sum_probs=32.5
Q ss_pred CEEEECCEEECCCCCCHHHHHHHHHHHHCCCCEEEEEECCCCC
Q ss_conf 8899823000788874899999999852473159876045787
Q gi|254780401|r 45 PVICVGGFVMGGTGKTPTALAIAKAVIDKNLKPGFLSRGYGRK 87 (338)
Q Consensus 45 pVI~VGNitvGGtGKTP~v~~l~~~l~~~g~~~~ilsRGYg~~ 87 (338)
-|...|+. |+|||-++..|++.|...++.+....+-..+.
T Consensus 5 ~I~i~G~~---GsGKsT~~~~L~~~l~~~~~~~~~~~~~~~~~ 44 (213)
T 4tmk_A 5 YIVIEGLE---GAGKTTARNVVVETLEQLGIRDMVFTREPGGT 44 (213)
T ss_dssp EEEEEECT---TSCHHHHHHHHHHHHHHTTCCCEEEEESSCSS
T ss_pred EEEEECCC---CCCHHHHHHHHHHHHHHCCCCEEEEECCCCCC
T ss_conf 89998998---88699999999999986799849983198996
No 85
>>2jfg_A UDP-N-acetylmuramoylalanine--D-glutamate ligase; nucleotide-binding, peptidoglycan synthesis, MURD ligase, ATP-binding, cell division, UMA, ADP; HET: KCX UMA ADP; 1.52A {Escherichia coli} (A:104-300)
Probab=80.97 E-value=2.9 Score=22.08 Aligned_cols=35 Identities=14% Similarity=0.369 Sum_probs=29.2
Q ss_pred CCEEEECCEEECCCCCCHHHHHHHHHHHHCCCCEEEEEE
Q ss_conf 988998230007888748999999998524731598760
Q gi|254780401|r 44 IPVICVGGFVMGGTGKTPTALAIAKAVIDKNLKPGFLSR 82 (338)
Q Consensus 44 ~pVI~VGNitvGGtGKTP~v~~l~~~l~~~g~~~~ilsR 82 (338)
+|||.| .|=-|||-++.+|+..|++.|++++..+-
T Consensus 2 ~~vi~V----tGt~GKTtt~~ll~~iL~~~g~~~~~~~~ 36 (197)
T 2jfg_A 2 APIVAI----TGSNGKSTVTTLVGEMAKAAGVNVGVGGN 36 (197)
T ss_dssp SCEEEE----ECSSSHHHHHHHHHHHHHHTTCCEEEEET
T ss_pred CEEEEE----ECCCCCHHHHHHHHHHHHHCCCCCCCCCC
T ss_conf 505875----21225337788888764320333322332
No 86
>>2i5e_A Hypothetical protein MM_2497; APC86122, hypothetic protein, structural genomics, PSI-2, protein structure initiative; 2.10A {Methanosarcina mazei GO1} (A:1-170)
Probab=80.84 E-value=4.3 Score=20.88 Aligned_cols=38 Identities=3% Similarity=-0.182 Sum_probs=31.3
Q ss_pred EEECCCCCC----------------HHHHHHHHHHHHCCCCEEEEEECCCCCCC
Q ss_conf 000788874----------------89999999985247315987604578777
Q gi|254780401|r 52 FVMGGTGKT----------------PTALAIAKAVIDKNLKPGFLSRGYGRKSR 89 (338)
Q Consensus 52 itvGGtGKT----------------P~v~~l~~~l~~~g~~~~ilsRGYg~~~~ 89 (338)
|-+||.||| |+..|..+.|++.|..-.++..+|.....
T Consensus 9 IlAaG~G~tRl~~~~pK~l~~i~gkpli~~~l~~l~~~g~~~iviv~~~~~~~~ 62 (170)
T 2i5e_A 9 PYKKAGAKSRLSPVLSLQEREEFVELXLNQVISSLKGAGIEQVDILSPSVYGLE 62 (170)
T ss_dssp ECCCTTTTGGGTTTSCHHHHHHHHHHHHHHHHHHHHHTTCSEEEEEESSCTTCS
T ss_pred ECCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCEEEEEECCCHHHHH
T ss_conf 769998867878648999999999999999999986279809999828756777
No 87
>>1osn_A Thymidine kinase, VZV-TK; chickenpox, BVDU-MP, transferase; HET: BVP ADP; 3.20A {Human herpesvirus 3} (A:)
Probab=80.70 E-value=1.9 Score=23.37 Aligned_cols=35 Identities=17% Similarity=0.190 Sum_probs=29.8
Q ss_pred EEEECCEEECCCCCCHHHHHHHHHHHHCCCCEEEEEEC
Q ss_conf 89982300078887489999999985247315987604
Q gi|254780401|r 46 VICVGGFVMGGTGKTPTALAIAKAVIDKNLKPGFLSRG 83 (338)
Q Consensus 46 VI~VGNitvGGtGKTP~v~~l~~~l~~~g~~~~ilsRG 83 (338)
|..-||+ |+|||-++..|++.|..+|+.++.+..+
T Consensus 15 I~ieG~~---GsGKSTl~~~La~~L~~~~~~v~~~~ep 49 (341)
T 1osn_A 15 IYLDGAY---GIGKTTAAEEFLHHFAITPNRILLIGEP 49 (341)
T ss_dssp EEEEESS---SSCTTHHHHHHHHTTTTSGGGEEEECCC
T ss_pred EEEECCC---CCCHHHHHHHHHHHHHHCCCCEEEEECC
T ss_conf 9998986---7789999999999872369856997086
No 88
>>1jbw_A Folylpolyglutamate synthase; FPGS folate AMPPCP ternary complex, ligase; HET: KCX ACQ TMF; 1.85A {Lactobacillus casei} (A:1-297)
Probab=80.64 E-value=4.3 Score=20.83 Aligned_cols=115 Identities=17% Similarity=0.100 Sum_probs=62.8
Q ss_pred CCCCCCCCEEEECCEEECCCCCCHHHHHHHHHHHHCCCCEEEEEECCCCCCCCCEEEECCCCCHHHHCCHH---------
Q ss_conf 64338898899823000788874899999999852473159876045787777558714567887704212---------
Q gi|254780401|r 38 QRLHAPIPVICVGGFVMGGTGKTPTALAIAKAVIDKNLKPGFLSRGYGRKSRISFRVDLEKHSAYDVGDEP--------- 108 (338)
Q Consensus 38 ~~~~~~~pVI~VGNitvGGtGKTP~v~~l~~~l~~~g~~~~ilsRGYg~~~~~~~~v~~~~~~~~~vGDEp--------- 108 (338)
.....+.|||+| +|=-|||.++.+|+..|+..|++++....+.-..............+ ...+++.
T Consensus 33 ~~~~~~~~vI~V----tGT~GKTTtt~ll~~~L~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~ 107 (297)
T 1jbw_A 33 GNPQQQGRYIHV----TGTNGKGSAANAIAHVLEASGLTVGLYTSPFIMRFNERIMIDHEPIP-DAALVNAVAFVRAALE 107 (297)
T ss_dssp TCGGGSSCEEEE----ECSSCHHHHHHHHHHHHHHTTCCEEEECSSCSSCGGGGEEETTEECC-HHHHHHHHHHHHHHHH
T ss_pred CCHHHHCCEEEE----ECCCCHHHHHHHHHHHHHHCCCCEEEECCCCCCCEEEEEEECCEECC-HHHHHHHHHHHHHHHH
T ss_conf 992870998999----79822799999999999978998899788772720348999999658-8999988878899999
Q ss_pred HHHHHC--CCCCCCCCHHHHH-HHHCCCCCCEEEECCCCCC---C--CCCCEEEEEE
Q ss_conf 332205--7634652012256-6410245747997183223---4--4123069999
Q gi|254780401|r 109 LLLARR--AVTIVTSDRKIGV-QMLLQEGVDIIIMDDGFHS---A--DLQADFSLIV 157 (338)
Q Consensus 109 ~lla~~--~pv~V~~~R~~~~-~~~~~~~~diiIlDDGfQh---~--~l~rdl~Ivl 157 (338)
.+.... .|+.+...-.... ......+.++.+++-+... . .+..|+-++.
T Consensus 108 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~p~v~iit 164 (297)
T 1jbw_A 108 RLQQQQADFNVTEFEFITALAYWYFRQRQVDVAVIEVGIGGDTDSTNVITPVVSVLT 164 (297)
T ss_dssp HHHHHSTTCCCCHHHHHHHHHHHHHHHTTCSEEEEECSSSSTTSTTCSCCCSEEEEC
T ss_pred HHHHHCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEECCHHHHHCCCEEEECCEEEEC
T ss_conf 998724788888999999999999987268689996233554146267530123432
No 89
>>3cmu_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 4.20A {Escherichia coli} (A:357-593,A:665-705)
Probab=80.54 E-value=1.2 Score=24.70 Aligned_cols=27 Identities=22% Similarity=0.324 Sum_probs=24.8
Q ss_pred CCCCCCHHHHHHHHHHHHCCCCEEEEE
Q ss_conf 788874899999999852473159876
Q gi|254780401|r 55 GGTGKTPTALAIAKAVIDKNLKPGFLS 81 (338)
Q Consensus 55 GGtGKTP~v~~l~~~l~~~g~~~~ils 81 (338)
-|||||-+++.++......|.+++.++
T Consensus 36 pGsGKTtl~l~~~~~~~~~g~~vlyId 62 (278)
T 3cmu_A 36 ESSGKTTLTLQVIAAAQREGKTCAFID 62 (278)
T ss_dssp TTSSHHHHHHHHHHHHHTTTCCEEEEC
T ss_pred CCCCCEEEEHHHHHHHHHCCCEEEEEE
T ss_conf 778842420578887874487468973
No 90
>>1sxj_A Activator 1 95 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ ATPase, DNA polymerase; HET: ATG ADP; 2.85A {Saccharomyces cerevisiae} (A:1-208)
Probab=80.30 E-value=2.8 Score=22.14 Aligned_cols=34 Identities=21% Similarity=0.091 Sum_probs=23.3
Q ss_pred CCCCEEEECCEEECCCCCCHHHHHHHHHHHHCCCCEEEEE
Q ss_conf 8898899823000788874899999999852473159876
Q gi|254780401|r 42 APIPVICVGGFVMGGTGKTPTALAIAKAVIDKNLKPGFLS 81 (338)
Q Consensus 42 ~~~pVI~VGNitvGGtGKTP~v~~l~~~l~~~g~~~~ils 81 (338)
.+-.++-.|. -|||||-++..+|+.+. +.+..++
T Consensus 76 ~~~~~Ll~GP---pGtGKT~~A~~lA~~~~---~~~~~~~ 109 (208)
T 1sxj_A 76 VFRAAMLYGP---PGIGKTTAAHLVAQELG---YDILEQN 109 (208)
T ss_dssp SCSEEEEECS---TTSSHHHHHHHHHHHTT---CEEEEEC
T ss_pred CCCEEEEECC---CCHHHHHHHHHHHHHHC---CCEEEEE
T ss_conf 8777999899---97159999999999859---9889995
No 91
>>3fe2_A Probable ATP-dependent RNA helicase DDX5; DEAD, ADP, ATP-binding, hydrolase, nucleotide- binding, RNA-binding, methylation, mRNA processing; HET: ADP; 2.60A {Homo sapiens} (A:)
Probab=80.03 E-value=2.5 Score=22.48 Aligned_cols=99 Identities=19% Similarity=0.149 Sum_probs=56.2
Q ss_pred EECCCCCC-HHHHHHHHHHHHCCCCEEEEEECCCCCCCCCEEEECCCCCHHHHCCHHHHHHHCCC----CCCCCCHHHHH
Q ss_conf 00788874-89999999985247315987604578777755871456788770421233220576----34652012256
Q gi|254780401|r 53 VMGGTGKT-PTALAIAKAVIDKNLKPGFLSRGYGRKSRISFRVDLEKHSAYDVGDEPLLLARRAV----TIVTSDRKIGV 127 (338)
Q Consensus 53 tvGGtGKT-P~v~~l~~~l~~~g~~~~ilsRGYg~~~~~~~~v~~~~~~~~~vGDEp~lla~~~p----v~V~~~R~~~~ 127 (338)
.-=||||| -+++-+...+.... +..+........+.+...-+.++-+|...+..... .+++.......
T Consensus 73 A~TGSGKT~af~lPil~~l~~~~-------~~~~~~~~~~iil~PTRELa~Qi~~~~~~~~~~~~~~~~~~~~g~~~~~~ 145 (242)
T 3fe2_A 73 AQTGSGKTLSYLLPAIVHINHQP-------FLERGDGPICLVLAPTRELAQQVQQVAAEYCRACRLKSTCIYGGAPKGPQ 145 (242)
T ss_dssp ECTTSCHHHHHHHHHHHHHHTSC-------CCCTTCCCSEEEECSSHHHHHHHHHHHHHHHHHTTCCEEEECTTSCHHHH
T ss_pred CCCCCCCCCCCCCCHHHHHCCCC-------CCCCCCCCEEEEECCCHHHHHHHHHHHHHHHCCCCEEEEEEECCCCHHHH
T ss_conf 57999864211451111100255-------31025786899965989999979999999733477589997089887999
Q ss_pred HHHCCCCCCEEEECCCC-----C--CCCCCCEEEEEEEC
Q ss_conf 64102457479971832-----2--34412306999961
Q gi|254780401|r 128 QMLLQEGVDIIIMDDGF-----H--SADLQADFSLIVVN 159 (338)
Q Consensus 128 ~~~~~~~~diiIlDDGf-----Q--h~~l~rdl~Ivl~d 159 (338)
....+.++|++|---|- + +..+ ..+..+++|
T Consensus 146 ~~~l~~~~~iiV~TPgrl~~~~~~~~~~l-~~l~~lVlD 183 (242)
T 3fe2_A 146 IRDLERGVEICIATPGRLIDFLECGKTNL-RRTTYLVLD 183 (242)
T ss_dssp HHHHHHCCSEEEECHHHHHHHHHHTSCCC-TTCCEEEET
T ss_pred HHHHHCCCCEEEECCCHHHHHHHCCCCCC-CCCEEEEEE
T ss_conf 99972799999989820687872383403-446399985
No 92
>>1p3d_A UDP-N-acetylmuramate--alanine ligase; alpha/beta protein; HET: UMA ANP; 1.70A {Haemophilus influenzae} (A:117-325)
Probab=79.57 E-value=1.9 Score=23.42 Aligned_cols=38 Identities=32% Similarity=0.456 Sum_probs=31.4
Q ss_pred CEEEECCEEECCCCCCHHHHHHHHHHHHCCCCEEEEEECCCC
Q ss_conf 889982300078887489999999985247315987604578
Q gi|254780401|r 45 PVICVGGFVMGGTGKTPTALAIAKAVIDKNLKPGFLSRGYGR 86 (338)
Q Consensus 45 pVI~VGNitvGGtGKTP~v~~l~~~l~~~g~~~~ilsRGYg~ 86 (338)
|||. .+|-.|||-++.+|+..|++.|++++....+..-
T Consensus 3 ~vI~----VtGTnGKttt~~~l~~iL~~~g~~~~~~~~~~~~ 40 (209)
T 1p3d_A 3 HGIA----VAGTHGKTTTTAXISXIYTQAKLDPTFVNGGLVK 40 (209)
T ss_dssp EEEE----EESSSCHHHHHHHHHHHHHHTTCCCEEEEEEEET
T ss_pred EEEE----EECCCCCCCCHHHHHHHHHHCCCCCEEEECCCCC
T ss_conf 2678----8644688600499999999789987899898336
No 93
>>1e8c_A UDP-N-acetylmuramoylalanyl-D-glutamate--2,6- diaminopimelate ligase; peptidoglycan biosynthesis; HET: KCX UAG API; 2.0A {Escherichia coli} (A:91-337)
Probab=78.64 E-value=5 Score=20.41 Aligned_cols=44 Identities=16% Similarity=0.036 Sum_probs=35.4
Q ss_pred HCCCCCCCCCEEEECCEEECCCCCCHHHHHHHHHHHHCCCCEEEEEEC
Q ss_conf 046433889889982300078887489999999985247315987604
Q gi|254780401|r 36 RGQRLHAPIPVICVGGFVMGGTGKTPTALAIAKAVIDKNLKPGFLSRG 83 (338)
Q Consensus 36 ~~~~~~~~~pVI~VGNitvGGtGKTP~v~~l~~~l~~~g~~~~ilsRG 83 (338)
+........|||+| +|=.|||-++.+++..|+..|+.++..+-.
T Consensus 10 ~~~~~~~~~~vI~V----tGT~GKTTtt~ll~~il~~~g~~~~~~~~~ 53 (247)
T 1e8c_A 10 FYHEPSDNLRLVGV----TGTNGKTTTTQLLAQWSQLLGEISAVXGTV 53 (247)
T ss_dssp HTTCGGGSSEEEEE----ESSSCHHHHHHHHHHHHHHTTCCEEEEETT
T ss_pred HHHCHHCCCCEEEE----ECCCCCHHHHHHHHHHHHHHCCCEEEECCC
T ss_conf 86372117848999----789997789999999999829964760666
No 94
>>1xx6_A Thymidine kinase; X-RAY, NESG, northeast structural genomics consortium, protein structure initiative, PSI; HET: ADP; 2.00A {Clostridium acetobutylicum atcc 824} (A:1-147)
Probab=77.40 E-value=5.4 Score=20.16 Aligned_cols=27 Identities=11% Similarity=0.038 Sum_probs=24.4
Q ss_pred CCCCCCHHHHHHHHHHHHCCCCEEEEE
Q ss_conf 788874899999999852473159876
Q gi|254780401|r 55 GGTGKTPTALAIAKAVIDKNLKPGFLS 81 (338)
Q Consensus 55 GGtGKTP~v~~l~~~l~~~g~~~~ils 81 (338)
-++|||-..+-.++.+...|.++.++.
T Consensus 17 M~SGKTteLl~~~~~~~~~g~kvl~ik 43 (147)
T 1xx6_A 17 XYSGKSEELIRRIRRAKIAKQKIQVFK 43 (147)
T ss_dssp TTSSHHHHHHHHHHHHHHTTCCEEEEE
T ss_pred CCCHHHHHHHHHHHHHHHCCCEEEEEE
T ss_conf 077899999999999998799299998
No 95
>>3lk7_A UDP-N-acetylmuramoylalanine--D-glutamate ligase; agalacitae, PSI, MCSG, structural genomics, midwest center for structural genomics; HET: MSE; 1.50A {Streptococcus agalactiae} (A:112-310)
Probab=77.03 E-value=3.6 Score=21.41 Aligned_cols=34 Identities=24% Similarity=0.276 Sum_probs=28.4
Q ss_pred CCEEEECCEEECCCCCCHHHHHHHHHHHHCCCCEEEEE
Q ss_conf 98899823000788874899999999852473159876
Q gi|254780401|r 44 IPVICVGGFVMGGTGKTPTALAIAKAVIDKNLKPGFLS 81 (338)
Q Consensus 44 ~pVI~VGNitvGGtGKTP~v~~l~~~l~~~g~~~~ils 81 (338)
.|||+| +|=-|||-++.+|+..|++.|.+++...
T Consensus 1 ~~vi~V----tGT~GKTtt~~~l~~iL~~~g~~~~~~~ 34 (199)
T 3lk7_A 1 SQLIGI----TGSNGKTTTTTXIAEVLNAGGQRGLLAG 34 (199)
T ss_dssp SEEEEE----ECSSCHHHHHHHHHHHHHHTTCCEEEEE
T ss_pred CCEEEE----EEECCCCHHHHHHHHHHHHCCCCCEECC
T ss_conf 977999----8035863389999999986054530013
No 96
>>1p9r_A General secretion pathway protein E; bacterial type II secretion system cytoplasmic protein - GSPE, putative ATPase/ ATP binding protein; 2.50A {Vibrio cholerae} (A:147-418)
Probab=76.83 E-value=4.4 Score=20.76 Aligned_cols=26 Identities=19% Similarity=0.125 Sum_probs=20.6
Q ss_pred CCCCCCHHHHHHHHHHHHCCCCEEEE
Q ss_conf 78887489999999985247315987
Q gi|254780401|r 55 GGTGKTPTALAIAKAVIDKNLKPGFL 80 (338)
Q Consensus 55 GGtGKTP~v~~l~~~l~~~g~~~~il 80 (338)
-|+|||-+...|++++......+.+.
T Consensus 30 tGsGKTtl~~al~~~~~~~~~~~~~~ 55 (272)
T 1p9r_A 30 TGSGKSTTLYAGLQELNSSERNILTV 55 (272)
T ss_dssp TTSCHHHHHHHHHHHHCCTTSCEEEE
T ss_pred CCCCCCHHHHHHHHHHCCCCCEEEEE
T ss_conf 98864268998754614688459996
No 97
>>2oap_1 GSPE-2, type II secretion system protein; hexameric ATPase, hydrolase; HET: ANP; 2.95A {Archaeoglobus fulgidus dsm 4304} PDB: 2oaq_1 (1:261-446)
Probab=76.64 E-value=3.3 Score=21.66 Aligned_cols=29 Identities=24% Similarity=0.116 Sum_probs=21.9
Q ss_pred CCCCCCHHHHHHHHHHHHCCCCEEEEEECC
Q ss_conf 788874899999999852473159876045
Q gi|254780401|r 55 GGTGKTPTALAIAKAVIDKNLKPGFLSRGY 84 (338)
Q Consensus 55 GGtGKTP~v~~l~~~l~~~g~~~~ilsRGY 84 (338)
-|+|||-+.-+|++.+... .+++++--.+
T Consensus 9 tGSGKTTll~aL~~~i~~~-~~~~~ied~~ 37 (186)
T 2oap_1 9 TASGKTTTLNAIXXFIPPD-AKVVSIEDTR 37 (186)
T ss_dssp TTSSHHHHHHHHGGGSCTT-CCEEEEESSC
T ss_pred CCCCHHHHHHHHHHHCCCC-CCCCCCCCCC
T ss_conf 6555489999999746765-6622123662
No 98
>>1eg7_A Formyltetrahydrofolate synthetase; folate binding, ATP binding, formate binding, monovalent cation binding, ligase; 2.50A {Moorella thermoacetica} (A:1-125,A:255-437)
Probab=76.64 E-value=4.3 Score=20.85 Aligned_cols=187 Identities=18% Similarity=0.224 Sum_probs=98.2
Q ss_pred CCCCEEEECCEEE--CCCCCCHHHHHHHHHHHHCCCCEEEEEEC--------CCCCC--CCCEEEECCCCCHHHHCCH--
Q ss_conf 8898899823000--78887489999999985247315987604--------57877--7755871456788770421--
Q gi|254780401|r 42 APIPVICVGGFVM--GGTGKTPTALAIAKAVIDKNLKPGFLSRG--------YGRKS--RISFRVDLEKHSAYDVGDE-- 107 (338)
Q Consensus 42 ~~~pVI~VGNitv--GGtGKTP~v~~l~~~l~~~g~~~~ilsRG--------Yg~~~--~~~~~v~~~~~~~~~vGDE-- 107 (338)
.+..+|.|-.++- +|-|||-+++-|+..|.+.|+++.+--|. -++.. .|...+.+ ||+
T Consensus 55 ~~~kvIlVTSitPt~~GEGKTTtsiNLA~aLA~~GkkvlaDLR~PSL~~~fGikgga~g~GLsqvL~--------ge~~~ 126 (308)
T 1eg7_A 55 PDGKLILVTAITPTPAGEGKTTTSVGLTDALARLGKRVMVCLREPSLGPSFGIKGGAAGGGYAQVVP--------MEDII 126 (308)
T ss_dssp CCCEEEEEEESSCCTTCCCHHHHHHHHHHHHHHTTCCEEEEECCCCSTHHHHTTCCCSEETTEEEEC--------HHHHT
T ss_pred CCCEEEEEEECCCCCCCCCCCCHHHHHHHHHHHCCCCEEEEEECCCCCCCCCCCCCCCCCCCCCCCC--------HHHHC
T ss_conf 9965999962589888887400198899999862984589972588788557545656676110130--------34401
Q ss_pred -HHHHHH--CCC----------CCCCCCHHHHHHHHCCCCCCEEEECCCCCCCCCCCEEEEEEECCCCCCCCCCCCCCHH
Q ss_conf -233220--576----------3465201225664102457479971832234412306999961843356655376136
Q gi|254780401|r 108 -PLLLAR--RAV----------TIVTSDRKIGVQMLLQEGVDIIIMDDGFHSADLQADFSLIVVNSHRGLGNGLVFPAGP 174 (338)
Q Consensus 108 -p~lla~--~~p----------v~V~~~R~~~~~~~~~~~~diiIlDDGfQh~~l~rdl~Ivl~d~~~~~gn~~llPaGp 174 (338)
|-|+.. ..| +.-+.+-..|-+.+.+. .|++|-.-|| |-+
T Consensus 127 ~Pnlvqt~e~~p~~vh~gPFaNIAhG~nsv~a~~~al~l-~dyvvtEaGf--------------------g~d------- 178 (308)
T 1eg7_A 127 KPNLVQTLENTPAFIHGGPFANIAHGCNSIIATKTALKL-ADYVVTEAGF--------------------GAD------- 178 (308)
T ss_dssp SCEEEEETTCCEEEECCCCCSSSSCCBCCHHHHHHHHHH-CSEEEEEBSS--------------------CTT-------
T ss_pred CCCCEEECCCCCEEEECCCHHHHHCCCHHHHHHHHHHHH-CCEEEEECCC--------------------CCC-------
T ss_conf 631032058973678337378765466299999999862-7858741234--------------------777-------
Q ss_pred HHHCCHHHHHHHHHHHHCCCCHHHHHHHCCCCHHHHHH---HH---CCCCCCCCCEEEEE-ECCCCHHHHHHHHHHHCCC
Q ss_conf 52100255665145442044124577631350111222---20---13211168638987-4155357899988740100
Q gi|254780401|r 175 LRVPLSRQLSYVDAILYVGNKKNVISSIKNKSVYFAKL---KP---RLTFDLSGKKVLAF-SGIADTEKFFTTVRQLGAL 247 (338)
Q Consensus 175 LREp~~~~l~rad~vi~~~~~~~~~~~~~~~~i~~~~~---~~---~~~~~l~~k~v~af-sGIa~P~~F~~~L~~~g~~ 247 (338)
+- +-|-.|+..- ..... +..-+..+.. +. ....++...++-|+ .|.+|=++-.+.++.+|..
T Consensus 179 ----lG-~eKf~dikcr----~~g~~--p~~~v~vat~ralk~hgg~~~~~~~~~n~~a~~~G~~nl~~hi~n~~~~g~p 247 (308)
T 1eg7_A 179 ----LG-AEKFYDVKCR----YAGFK--PDATVIVATVRALKMHGGVPKSDLATENLEALREGFANLEKHIENIGKFGVP 247 (308)
T ss_dssp ----TH-HHHHHHTHHH----HHTCC--CCEEEEEECHHHHHHTTTCCGGGTTSCCHHHHHHHHHHHHHHHHHHHTTTCC
T ss_pred ----CC-CHHHCCCCCC----CCCCC--CCEEEEEEEHHHHHHCCCCCHHHCCCCCHHHHHHHHHHHHHHHHHHHHCCCC
T ss_conf ----57-3321473112----47989--9889999545778774899837637618999998888999999999974998
Q ss_pred CCCC-CCCCCCCCCCHHHHHHHHHHHHHCCCE
Q ss_conf 0012-214332348989999999975647987
Q gi|254780401|r 248 IEQC-YSFGDHAHLSDKKIAYLLDQAQQKGLI 278 (338)
Q Consensus 248 i~~~-~~fpDHh~ys~~dl~~i~~~a~~~~~~ 278 (338)
++-. -.|++- ++.+++.+.+.+++.+..
T Consensus 248 ~vVaiN~f~~D---t~~Ei~~i~~~~~~~g~~ 276 (308)
T 1eg7_A 248 AVVAINAFPTD---TEAELNLLYELCAKAGAE 276 (308)
T ss_dssp EEEEEECCTTC---CHHHHHHHHHHTTTSEEE
T ss_pred EEEEEECCCCC---CHHHHHHHHHHHHHCCCE
T ss_conf 59997079998---888999999999977998
No 99
>>2qy9_A Cell division protein FTSY; SRP receptor, protein targeting, simibi class GTPase, cell cycle, GTP-binding, inner membrane, membrane; 1.90A {Escherichia coli} (A:93-290)
Probab=76.30 E-value=2.2 Score=22.88 Aligned_cols=30 Identities=20% Similarity=0.219 Sum_probs=26.9
Q ss_pred ECCCCCCHHHHHHHHHHHHCCCCEEEEEEC
Q ss_conf 078887489999999985247315987604
Q gi|254780401|r 54 MGGTGKTPTALAIAKAVIDKNLKPGFLSRG 83 (338)
Q Consensus 54 vGGtGKTP~v~~l~~~l~~~g~~~~ilsRG 83 (338)
.-|+|||-+.-.|+..|+..|.++.+....
T Consensus 15 ~nGsGKSTl~~~Lag~l~~~gg~v~~~g~d 44 (198)
T 2qy9_A 15 VNGVGKTTTIGKLARQFEQQGKSVMLAAGD 44 (198)
T ss_dssp CTTSCHHHHHHHHHHHHHTTTCCEEEECCC
T ss_pred CCCCCCCCHHHHHHHHHHHCCCCEEEEEEC
T ss_conf 333465404889999987446750699731
No 100
>>2eyq_A TRCF, transcription-repair coupling factor; MFD, SF2 ATPase, hydrolase; HET: EPE; 3.20A {Escherichia coli} (A:582-783)
Probab=75.97 E-value=5.8 Score=19.90 Aligned_cols=97 Identities=20% Similarity=0.144 Sum_probs=52.6
Q ss_pred CCCCCCHHHHHHHHHHHHCCCCEEEEEECCCCCCCCCEEEECCCCCHHHHCCHHHHHHHCC----CCC----CCCCHHHH
Q ss_conf 7888748999999998524731598760457877775587145678877042123322057----634----65201225
Q gi|254780401|r 55 GGTGKTPTALAIAKAVIDKNLKPGFLSRGYGRKSRISFRVDLEKHSAYDVGDEPLLLARRA----VTI----VTSDRKIG 126 (338)
Q Consensus 55 GGtGKTP~v~~l~~~l~~~g~~~~ilsRGYg~~~~~~~~v~~~~~~~~~vGDEp~lla~~~----pv~----V~~~R~~~ 126 (338)
=|+|||-+....+-...+.|.++.++. +...-+.+.=++-.-+.... .++ -+..+...
T Consensus 52 TGsGKT~~~~~~i~~~~~~~~~vl~i~--------------P~~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 117 (202)
T 2eyq_A 52 VGFGKTEVAMRAAFLAVDNHKQVAVLV--------------PTTLLAQQHYDNFRDRFANWPVRIEMISRFRSAKEQTQI 117 (202)
T ss_dssp CCTTTHHHHHHHHHHHHTTTCEEEEEC--------------SSHHHHHHHHHHHHHHSTTTTCCEEEESTTSCHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHHCCCEEEEEE--------------CHHHHHHHHHHHHHHHHHHCCCEEEEECCCCCCCHHHHH
T ss_conf 678714999999998740597389981--------------637779999999999751159789992486643149999
Q ss_pred HHHHCCCCCCEEEE-CCCCCCCCCCCEEEEEEECCCCCCC
Q ss_conf 66410245747997-1832234412306999961843356
Q gi|254780401|r 127 VQMLLQEGVDIIIM-DDGFHSADLQADFSLIVVNSHRGLG 165 (338)
Q Consensus 127 ~~~~~~~~~diiIl-DDGfQh~~l~rdl~Ivl~d~~~~~g 165 (338)
........+++++. .+-+++.....+++.+++|-..-++
T Consensus 118 ~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~IiDE~H~~~ 157 (202)
T 2eyq_A 118 LAEVAEGKIDILIGTHKLLQSDVKFKDLGLLIVDEEHRFG 157 (202)
T ss_dssp HHHHHTTCCSEEEECTHHHHSCCCCSSEEEEEEESGGGSC
T ss_pred HHHHCCCCEEEEECCHHHHHEEEECCCCCCEEECHHHHHH
T ss_conf 9763389802886302242100101556735603255556
No 101
>>2qgz_A Helicase loader, putative primosome component; structural genomics, PSI-2, protein structure initiative; 2.40A {Streptococcus pyogenes serotype M3} (A:)
Probab=75.92 E-value=2 Score=23.18 Aligned_cols=36 Identities=19% Similarity=0.170 Sum_probs=22.3
Q ss_pred CCCCCEEEECCEEECCCCCCHHHHHHHHHHHHCCCCEEE
Q ss_conf 388988998230007888748999999998524731598
Q gi|254780401|r 41 HAPIPVICVGGFVMGGTGKTPTALAIAKAVIDKNLKPGF 79 (338)
Q Consensus 41 ~~~~pVI~VGNitvGGtGKTP~v~~l~~~l~~~g~~~~i 79 (338)
..+-+++-+|.- |||||=++.++|+.+...++.+..
T Consensus 150 ~~~~gill~Gpp---GtGKT~La~aia~~~~~~~~~v~~ 185 (308)
T 2qgz_A 150 AEQKGLYLYGDM---GIGKSYLLAAMAHELSEKKGVSTT 185 (308)
T ss_dssp SSCCEEEEECST---TSSHHHHHHHHHHHHHHHSCCCEE
T ss_pred CCCCEEEEECCC---CCCCHHHHHHHHHHHHHCCCCHHH
T ss_conf 678808998989---998058999999999863431012
No 102
>>2i3b_A HCR-ntpase, human cancer-related ntpase; AAA, rossmann, hydrolase; NMR {Homo sapiens} (A:)
Probab=75.84 E-value=2.1 Score=23.11 Aligned_cols=29 Identities=14% Similarity=0.102 Sum_probs=25.1
Q ss_pred CCCCCCHHHHHHHHHHHHCCCCEEEEEEC
Q ss_conf 78887489999999985247315987604
Q gi|254780401|r 55 GGTGKTPTALAIAKAVIDKNLKPGFLSRG 83 (338)
Q Consensus 55 GGtGKTP~v~~l~~~l~~~g~~~~ilsRG 83 (338)
-|||||-++-.|+..+...+.++.+....
T Consensus 10 ~G~GKTTl~~~l~~~l~~~~~~v~~~~~~ 38 (189)
T 2i3b_A 10 PGVGKTTLIHKASEVLKSSGVPVDGFYTE 38 (189)
T ss_dssp CSSCHHHHHHHHHHHHHHTTCCCEEEECC
T ss_pred CCCCHHHHHHHHHHHHHHCCCEEEEEEEC
T ss_conf 99809999999999999779968799832
No 103
>>2pk3_A GDP-6-deoxy-D-LYXO-4-hexulose reductase; SDR, short-chain dehydrogenase/reductase, rossmann fold, oxidoreductase; HET: A2R GDD; 1.82A {Aneurinibacillus thermoaerophilus} (A:)
Probab=75.32 E-value=6.1 Score=19.79 Aligned_cols=43 Identities=19% Similarity=0.112 Sum_probs=32.0
Q ss_pred EEECCCCCCHHHHHHHHHHHHCCCCEEEEEECCCCCCCCCEEEEC
Q ss_conf 000788874899999999852473159876045787777558714
Q gi|254780401|r 52 FVMGGTGKTPTALAIAKAVIDKNLKPGFLSRGYGRKSRISFRVDL 96 (338)
Q Consensus 52 itvGGtGKTP~v~~l~~~l~~~g~~~~ilsRGYg~~~~~~~~v~~ 96 (338)
+.+|||| -+=.+|++.|.++|+.+.++.|.-.........+..
T Consensus 16 LItGatG--fiG~~lv~~L~~~g~~v~~~~r~~~~~~~~~~~~~~ 58 (321)
T 2pk3_A 16 LITGVAG--FVGKYLANHLTEQNVEVFGTSRNNEAKLPNVEMISL 58 (321)
T ss_dssp EEETTTS--HHHHHHHHHHHHTTCEEEEEESCTTCCCTTEEEEEC
T ss_pred EEECCCC--HHHHHHHHHHHHCCCEEEEEECCCCCCCCCCEEEEE
T ss_conf 9967888--899999999997849899981887124689769994
No 104
>>2f00_A UDP-N-acetylmuramate--L-alanine ligase; amide bond ligase, ATPase, bacterial cell WALL; 2.50A {Escherichia coli} (A:118-326)
Probab=75.28 E-value=2.9 Score=22.03 Aligned_cols=34 Identities=26% Similarity=0.510 Sum_probs=29.5
Q ss_pred EECCCCCCHHHHHHHHHHHHCCCCEEEEEECCCC
Q ss_conf 0078887489999999985247315987604578
Q gi|254780401|r 53 VMGGTGKTPTALAIAKAVIDKNLKPGFLSRGYGR 86 (338)
Q Consensus 53 tvGGtGKTP~v~~l~~~l~~~g~~~~ilsRGYg~ 86 (338)
++|=.|||-++.+|+..|+..|++++..+-+..-
T Consensus 7 VtGT~GKtst~~~l~~iL~~~g~~~~~~~~~~~~ 40 (209)
T 2f00_A 7 IAGTHGKTTTTAXVSSIYAEAGLDPTFVNGGLVK 40 (209)
T ss_dssp EESSSCHHHHHHHHHHHHHHTTCCCEEEEEEEET
T ss_pred EEECCCCCHHHHHHHHHHHHCCCCCEEEECCCCC
T ss_conf 7503474318999999999769981899688667
No 105
>>2zr9_A Protein RECA, recombinase A; recombination, RECA mutants, DNA-repair, ATP-binding, cytoplasm, DNA damage, DNA recombination; HET: DTP; 2.50A {Mycobacterium smegmatis str} PDB: 2zr0_A* 2zra_A* 2zrb_A 2zrm_A* 1ubc_A* 1ubf_A* 1ubg_A* 1ube_A* 2g88_A* 2odw_A* 2oe2_A 2oep_A* 2oes_A 2ofo_A 2zr7_A 2odn_A* 2zrn_A 2zro_A* 2zrp_A* 2zre_A* ... (A:35-271)
Probab=75.10 E-value=2.7 Score=22.24 Aligned_cols=27 Identities=22% Similarity=0.251 Sum_probs=24.8
Q ss_pred CCCCCCHHHHHHHHHHHHCCCCEEEEE
Q ss_conf 788874899999999852473159876
Q gi|254780401|r 55 GGTGKTPTALAIAKAVIDKNLKPGFLS 81 (338)
Q Consensus 55 GGtGKTP~v~~l~~~l~~~g~~~~ils 81 (338)
=|||||-++..++......|.++..++
T Consensus 36 pGsGKT~l~lq~~~~~~~~g~~v~yi~ 62 (237)
T 2zr9_A 36 ESSGKTTVALHAVANAQAAGGIAAFID 62 (237)
T ss_dssp TTSSHHHHHHHHHHHHHHTTCCEEEEE
T ss_pred CCCCHHHHHHHHHHHHHCCCCEEEEEE
T ss_conf 767789999999987525898799998
No 106
>>2pln_A HP1043, response regulator; signaling protein; 1.80A {Helicobacter pylori} PDB: 2hqo_A (A:)
Probab=74.80 E-value=5.5 Score=20.11 Aligned_cols=48 Identities=13% Similarity=0.140 Sum_probs=37.1
Q ss_pred CCCCCCCCHHHHHHHHCCCCCCEEEECCC------CCCCCCCCEEEEEEECCCC
Q ss_conf 76346520122566410245747997183------2234412306999961843
Q gi|254780401|r 115 AVTIVTSDRKIGVQMLLQEGVDIIIMDDG------FHSADLQADFSLIVVNSHR 162 (338)
Q Consensus 115 ~pv~V~~~R~~~~~~~~~~~~diiIlDDG------fQh~~l~rdl~Ivl~d~~~ 162 (338)
+.|.++.+-.+|...+.+..+|+|++|++ ++=....+++-++++.+..
T Consensus 43 ~~v~~a~~g~eAl~~~~~~~~dli~~d~~~p~~~~~~~~~~~~~~pvI~~t~~~ 96 (137)
T 2pln_A 43 FXADVTESLEDGEYLXDIRNYDLVXVSDKNALSFVSRIKEKHSSIVVLVSSDNP 96 (137)
T ss_dssp CEEEEESCHHHHHHHHHHSCCSEEEECSTTHHHHHHHHHHHSTTSEEEEEESSC
T ss_pred CEEEEECCHHHHHHHHHHHCCHHHHHHHCCCHHHHHHHHHHHCCCCCCCCCCCC
T ss_conf 999998887999999874423298854122014677876630333211456778
No 107
>>2jjm_A Glycosyl transferase, group 1 family protein; anthrax, nucleotide, carbohydrate; 3.10A {Bacillus anthracis} (A:1-191,A:370-394)
Probab=74.68 E-value=1 Score=25.21 Aligned_cols=142 Identities=11% Similarity=0.097 Sum_probs=73.7
Q ss_pred CCCCCEEEECCEEECCCCCCHHHHHHHHHHHHCCCCEEEEEECCCCCCCCC---EEEECCCCCHHHHCCHHHHHHHCCCC
Q ss_conf 388988998230007888748999999998524731598760457877775---58714567887704212332205763
Q gi|254780401|r 41 HAPIPVICVGGFVMGGTGKTPTALAIAKAVIDKNLKPGFLSRGYGRKSRIS---FRVDLEKHSAYDVGDEPLLLARRAVT 117 (338)
Q Consensus 41 ~~~~pVI~VGNitvGGtGKTP~v~~l~~~l~~~g~~~~ilsRGYg~~~~~~---~~v~~~~~~~~~vGDEp~lla~~~pv 117 (338)
+.+..|+.|.--..||.+ -.+..|++.|.++|+.|.|++.+++...... ..+..-... ..+.+ ..+.
T Consensus 13 ~MKmkI~~v~~p~~GG~~--~~~~~la~~L~~~G~eV~vit~~~~~~~~~~~~~~~~~~i~~~-----~~~~~---~~~~ 82 (216)
T 2jjm_A 13 HMKLKIGITCYPSVGGSG--VVGTELGKQLAERGHEIHFITSGLPFRLNKVYPNIYFHEVTVN-----QYSVF---QYPP 82 (216)
T ss_dssp --CCEEEEECCC--CHHH--HHHHHHHHHHHHTTCEEEEECSSCC----CCCTTEEEECCCCC---------C---CSCC
T ss_pred CCCCEEEEECCCCCCCHH--HHHHHHHHHHHHCCCEEEEEECCCCCCCCCCCCCCEEEEECCC-----CCCCC---CCCH
T ss_conf 865779998999999699--9999999999977998999947998642113797069970456-----66610---1560
Q ss_pred CCCCCHHHHHHHHCCCCCCEEEECCCCCCCC--------CCCEEEEEEECCCCCCCCCCCCCCHHHHHCCHHHHHHHHHH
Q ss_conf 4652012256641024574799718322344--------12306999961843356655376136521002556651454
Q gi|254780401|r 118 IVTSDRKIGVQMLLQEGVDIIIMDDGFHSAD--------LQADFSLIVVNSHRGLGNGLVFPAGPLRVPLSRQLSYVDAI 189 (338)
Q Consensus 118 ~V~~~R~~~~~~~~~~~~diiIlDDGfQh~~--------l~rdl~Ivl~d~~~~~gn~~llPaGpLREp~~~~l~rad~v 189 (338)
..-.--..-.+.+.+.++|+|..-.++.+.. ..+++-++.... +.......-...++.-....+++||.+
T Consensus 83 ~~~~~~~~l~~~i~~~~~DiIh~h~~~~~~~~~~l~~~~~~~~ip~v~~~h--~~~~~~~~~~~~~~~~~~~~~~~ad~i 160 (216)
T 2jjm_A 83 YDLALASKMAEVAQRENLDILHVHYAIPHAICAYLAKQMIGERIKIVTTLH--GTDITVLGSDPSLNNLIRFGIEQSDVV 160 (216)
T ss_dssp HHHHHHHHHHHHHHHHTCSEEEECSSTTHHHHHHHHHHHTTTCSEEEEECC--HHHHHTTTTCTTTHHHHHHHHHHSSEE
T ss_pred HHHHHHHHHHHHHHHHCCCEEEECCCCCHHHHHHHHHHHHCCCCCEEEEEC--CCCCCCHHHHHHHHHHHHHHHHHCCEE
T ss_conf 358999999999887098489832433116899999875056773355311--222100014778889999999744176
Q ss_pred HHCCC
Q ss_conf 42044
Q gi|254780401|r 190 LYVGN 194 (338)
Q Consensus 190 i~~~~ 194 (338)
+....
T Consensus 161 iavS~ 165 (216)
T 2jjm_A 161 TAVSH 165 (216)
T ss_dssp EESCH
T ss_pred EEECC
T ss_conf 75202
No 108
>>2w0m_A SSO2452; RECA, SSPF, unknown function; 2.0A {Sulfolobus solfataricus P2} (A:)
Probab=74.61 E-value=2.5 Score=22.48 Aligned_cols=34 Identities=21% Similarity=0.212 Sum_probs=27.8
Q ss_pred EEEECCEEECCCCCCHHHHHHHHHHHHCCCCEEEEEE
Q ss_conf 8998230007888748999999998524731598760
Q gi|254780401|r 46 VICVGGFVMGGTGKTPTALAIAKAVIDKNLKPGFLSR 82 (338)
Q Consensus 46 VI~VGNitvGGtGKTP~v~~l~~~l~~~g~~~~ilsR 82 (338)
+...|. =|+|||-+++-++....+.|.++..++-
T Consensus 26 ~~i~G~---pGsGKT~l~lql~~~~~~~g~~~~yi~~ 59 (235)
T 2w0m_A 26 IALTGE---PGTGKTIFSLHFIAKGLRDGDPCIYVTT 59 (235)
T ss_dssp EEEECS---TTSSHHHHHHHHHHHHHHHTCCEEEEES
T ss_pred EEEEEC---CCCCHHHHHHHHHHHHHHHCCCCCCCCC
T ss_conf 999968---9999999999999998762014444434
No 109
>>1l8q_A Chromosomal replication initiator protein DNAA; AAA+, helix-turn-helix, nucleotide-binding, DNA binding, replication initiation; HET: ADP; 2.70A {Aquifex aeolicus} (A:1-166)
Probab=74.60 E-value=2.9 Score=22.07 Aligned_cols=38 Identities=24% Similarity=0.279 Sum_probs=28.8
Q ss_pred CCCCCEEEECCEEECCCCCCHHHHHHHHHHHHCCCCEEEEE
Q ss_conf 38898899823000788874899999999852473159876
Q gi|254780401|r 41 HAPIPVICVGGFVMGGTGKTPTALAIAKAVIDKNLKPGFLS 81 (338)
Q Consensus 41 ~~~~pVI~VGNitvGGtGKTP~v~~l~~~l~~~g~~~~ils 81 (338)
..+-.++-.|.- |||||-++.++++.+...++.+...+
T Consensus 35 ~~~~~~ll~Gpp---GtGKT~la~aia~~~~~~~~~~~~~~ 72 (166)
T 1l8q_A 35 SLYNPIFIYGSV---GTGKTHLLQAAGNEAKKRGYRVIYSS 72 (166)
T ss_dssp TSCSSEEEECSS---SSSHHHHHHHHHHHHHHTTCCEEEEE
T ss_pred CCCCEEEEECCC---CCCHHHHHHHHHHHHHHCCCCEEEEE
T ss_conf 667618988899---99899999999999985499759944
No 110
>>3ice_A Transcription termination factor RHO; transcription, ATPase, hexamer, helicase, RNA, RECA, OB fold, motor, ATP-binding, hydrolase; HET: MSE ADP SPD; 2.80A {Escherichia coli k-12} PDB: 1pv4_A 1pvo_A* 1xpo_A* 1xpr_A* 1xpu_A* 2ht1_A (A:142-422)
Probab=74.53 E-value=5.6 Score=20.01 Aligned_cols=97 Identities=14% Similarity=-0.023 Sum_probs=52.5
Q ss_pred CCEEECCCCCCHHHHHHHHHHHHCCCCEEEEEECCCC---------CCCCCEEEECCCCCHHHHCCHHHHHHHCCCCCCC
Q ss_conf 2300078887489999999985247315987604578---------7777558714567887704212332205763465
Q gi|254780401|r 50 GGFVMGGTGKTPTALAIAKAVIDKNLKPGFLSRGYGR---------KSRISFRVDLEKHSAYDVGDEPLLLARRAVTIVT 120 (338)
Q Consensus 50 GNitvGGtGKTP~v~~l~~~l~~~g~~~~ilsRGYg~---------~~~~~~~v~~~~~~~~~vGDEp~lla~~~pv~V~ 120 (338)
|=+.-=|+|||-+...+++........++...++.+. .....+.+... -|||.+..-.+|-.
T Consensus 37 ~I~~~~g~GKt~ll~~i~~~~~~~~~v~~~~~~~~~e~~e~~~~~~~~~~svvv~~t-------sd~~~~~r~~~~~~-- 107 (281)
T 3ice_A 37 LIVAPPKAGKTXLLQNIAQSIAYNHPDCVLXVLLIDERPEEVTEXQRLVKGEVVAST-------FDEPASRHVQVAEX-- 107 (281)
T ss_dssp EEECCSSSSHHHHHHHHHHHHHHHCTTSEEEEEEESSCHHHHHHHHTTCSSEEEEEC-------TTSCHHHHHHHHHH--
T ss_pred EEECCCCCCHHHHHHHHHHHHHCCCCCEEEEEEEEEEHHHHHHHHHHHCCCEEEEEC-------CCCCHHHHHHHHHH--
T ss_conf 885489874889999999755406997799999863555556545421143799965-------88735554689999--
Q ss_pred CCHHHHHHHHCCCCCCE-EEECCCCCCCCCCCEEEEEE
Q ss_conf 20122566410245747-99718322344123069999
Q gi|254780401|r 121 SDRKIGVQMLLQEGVDI-IIMDDGFHSADLQADFSLIV 157 (338)
Q Consensus 121 ~~R~~~~~~~~~~~~di-iIlDDGfQh~~l~rdl~Ivl 157 (338)
=..-+++....+-|| +++||=-.|-.-.|.+...+
T Consensus 108 --a~tiAEyfr~~G~~Vlli~DslTr~A~A~reis~~~ 143 (281)
T 3ice_A 108 --VIEKAKRLVEHKKDVIILLDSITRLARAYNTVVPAS 143 (281)
T ss_dssp --HHHHHHHHHHTSCEEEEEEECHHHHHHHHHHHSCCS
T ss_pred --HHHHHHHHHHCCCCCCEECCCHHHHHHHHHHHHHHC
T ss_conf --999999999859974134275899999998777624
No 111
>>2r6a_A DNAB helicase, replicative helicase; replication, DNAB; 2.90A {Geobacillus stearothermophilus} PDB: 2r6c_A 2r6d_A 2r6e_A 2vyf_A 2vye_A (A:191-454)
Probab=74.49 E-value=3.8 Score=21.22 Aligned_cols=27 Identities=37% Similarity=0.396 Sum_probs=23.1
Q ss_pred CCCCCCHHHHHHHHHH-HHCCCCEEEEE
Q ss_conf 7888748999999998-52473159876
Q gi|254780401|r 55 GGTGKTPTALAIAKAV-IDKNLKPGFLS 81 (338)
Q Consensus 55 GGtGKTP~v~~l~~~l-~~~g~~~~ils 81 (338)
.|+|||-++..++-.+ ...|.++..+|
T Consensus 22 ~G~GKT~l~l~~~~~~~~~~g~~v~~~s 49 (264)
T 2r6a_A 22 PSVGKTAFALNIAQNVATKTNENVAIFS 49 (264)
T ss_dssp TTSCHHHHHHHHHHHHHHHSSCCEEEEE
T ss_pred CCCCHHHHHHHHHHHHHCCCCCCEEEEE
T ss_conf 4540279999999723024798369983
No 112
>>2pt7_A CAG-ALFA; ATPase, protein-protein complex, type IV secretion, hydrolase/protein binding complex; 2.40A {Helicobacter pylori 26695} (A:139-330)
Probab=74.48 E-value=1.8 Score=23.47 Aligned_cols=34 Identities=26% Similarity=0.339 Sum_probs=22.8
Q ss_pred CCEEEECCEEECCCCCCHHHHHHHHHHHHCCCCEEEEE
Q ss_conf 98899823000788874899999999852473159876
Q gi|254780401|r 44 IPVICVGGFVMGGTGKTPTALAIAKAVIDKNLKPGFLS 81 (338)
Q Consensus 44 ~pVI~VGNitvGGtGKTP~v~~l~~~l~~~g~~~~ils 81 (338)
..++.+|- -|+|||-+..+|++++.... +..++-
T Consensus 34 ~~ili~G~---tGsGKTTll~al~~~~~~~~-~~~~ie 67 (192)
T 2pt7_A 34 KNVIVCGG---TGSGKTTYIKSIMEFIPKEE-RIISIE 67 (192)
T ss_dssp CCEEEEES---TTSCHHHHHHHGGGGSCTTS-CEEEEE
T ss_pred CCEEEEEC---CCCCCHHHHHHHHHHCCCCC-CEEECC
T ss_conf 86799950---37982788899876412556-333124
No 113
>>2wv9_A Flavivirin protease NS2B regulatory subunit, flavivirin protease NS3 catalytic subunit...; NS2B-NS3 protease; 2.75A {Murray valley encephalitis virus} (A:232-377,A:537-633)
Probab=73.72 E-value=2.9 Score=22.07 Aligned_cols=27 Identities=37% Similarity=0.502 Sum_probs=22.9
Q ss_pred CCCCCCHHH-HHHHHHHHHCCCCEEEEE
Q ss_conf 788874899-999999852473159876
Q gi|254780401|r 55 GGTGKTPTA-LAIAKAVIDKNLKPGFLS 81 (338)
Q Consensus 55 GGtGKTP~v-~~l~~~l~~~g~~~~ils 81 (338)
=|+|||-.+ .++++.+.+.+.++.|++
T Consensus 19 TGSGKT~~~l~~il~~~~~~~~rvLiLa 46 (243)
T 2wv9_A 19 PGAGKTRRILPQIIKDAIQKRLRTAVLA 46 (243)
T ss_dssp TTTTTTTTHHHHHHHHHHHTTCCEEEEE
T ss_pred CCCCHHHHHHHHHHHHCCCCCCEEEEEH
T ss_conf 9885999999999985614699999996
No 114
>>2ffh_A Protein (FFH); SRP54, signal recognition particle, GTPase, M domain, RNA-binding, signal sequence-binding, helix-turn-helix, protein targeting; 3.20A {Thermus aquaticus} (A:93-282)
Probab=73.38 E-value=3.2 Score=21.72 Aligned_cols=31 Identities=29% Similarity=0.358 Sum_probs=26.8
Q ss_pred ECCCCCCHHHHHHHHHHHHCCCCEEEEEECC
Q ss_conf 0788874899999999852473159876045
Q gi|254780401|r 54 MGGTGKTPTALAIAKAVIDKNLKPGFLSRGY 84 (338)
Q Consensus 54 vGGtGKTP~v~~l~~~l~~~g~~~~ilsRGY 84 (338)
--|+|||-++-.|+..+..++.++.++..-.
T Consensus 14 ~~GsGKST~l~~l~~~~~~~~~~~~~~~~d~ 44 (190)
T 2ffh_A 14 LQGSGKTTTAAKLALYYKGKGRRPLLVAADT 44 (190)
T ss_dssp CTTSSHHHHHHHHHHHHHTTTCCEEEEECCS
T ss_pred CCCCCCHHHHHHHHHHHHHCCCCEEEEECCC
T ss_conf 7667624579999999984498025874354
No 115
>>1g5t_A COB(I)alamin adenosyltransferase; P-loop protein, cobalamin biosynthesis, RECA fold; HET: ATP; 1.80A {Salmonella typhimurium} (A:)
Probab=73.34 E-value=6.7 Score=19.46 Aligned_cols=34 Identities=21% Similarity=0.253 Sum_probs=25.4
Q ss_pred EECCCCCCHHHHHHHHHHHHCCCCEEEEEECCCCC
Q ss_conf 00788874899999999852473159876045787
Q gi|254780401|r 53 VMGGTGKTPTALAIAKAVIDKNLKPGFLSRGYGRK 87 (338)
Q Consensus 53 tvGGtGKTP~v~~l~~~l~~~g~~~~ilsRGYg~~ 87 (338)
|=-|-|||-.++=+|=.-.-+|++|.|+ ..-++.
T Consensus 35 tG~GKGKTTAAlG~alRA~G~G~rV~ii-QFLKg~ 68 (196)
T 1g5t_A 35 TGNGKGKTTAAFGTAARAVGHGKNVGVV-QFIKGT 68 (196)
T ss_dssp ESSSSCHHHHHHHHHHHHHHTTCCEEEE-ESSCCS
T ss_pred ECCCCCHHHHHHHHHHHHHCCCCEEEEE-EEEECC
T ss_conf 2499872889999999984389879999-986178
No 116
>>2vhj_A Ntpase P4, P4; non- hydrolysable ATP analogue, hydrolase, virus dsRNA, molecular motor, packaging ATPase, hexameric helicase; HET: ADP; 1.80A {Pseudomonas phage PHI12} PDB: 2vhq_A* 1w44_A* 1w46_A* 1w47_A* 1w48_A* 1w49_A* 1w4a_A* 1w4b_A* 1w4c_A 2vht_A* 2vhu_A* 2vhc_A* (A:1-42,A:107-331)
Probab=72.55 E-value=4.6 Score=20.62 Aligned_cols=25 Identities=32% Similarity=0.434 Sum_probs=19.5
Q ss_pred CCCCCCHHHHHHHHHHHHCCCCEEE
Q ss_conf 7888748999999998524731598
Q gi|254780401|r 55 GGTGKTPTALAIAKAVIDKNLKPGF 79 (338)
Q Consensus 55 GGtGKTP~v~~l~~~l~~~g~~~~i 79 (338)
-|||||-++..+++.+...+..+.+
T Consensus 68 pGtGKTtla~ala~~l~~~~~~i~i 92 (267)
T 2vhj_A 68 GNSGKTPLVHALGEALGGKDKYATV 92 (267)
T ss_dssp CSSSHHHHHHHHHHHHHTTSCCEEE
T ss_pred CCCCHHHHHHHHHHHHCCCCCCEEE
T ss_conf 9987999999999986289993881
No 117
>>1g8f_A Sulfate adenylyltransferase; alpha-beta protein, beta-barrel, rossmann-fold, kinase fold; 1.95A {Saccharomyces cerevisiae} (A:392-511)
Probab=72.21 E-value=3.4 Score=21.57 Aligned_cols=56 Identities=7% Similarity=-0.045 Sum_probs=35.4
Q ss_pred CCCCCCHHHHHHHHHHHHC--CCCEEEEEECCCCCCCCCEEEECCCCCHHHHCCHHHHHHHCCC-CC---CCCCHHHH
Q ss_conf 7888748999999998524--7315987604578777755871456788770421233220576-34---65201225
Q gi|254780401|r 55 GGTGKTPTALAIAKAVIDK--NLKPGFLSRGYGRKSRISFRVDLEKHSAYDVGDEPLLLARRAV-TI---VTSDRKIG 126 (338)
Q Consensus 55 GGtGKTP~v~~l~~~l~~~--g~~~~ilsRGYg~~~~~~~~v~~~~~~~~~vGDEp~lla~~~p-v~---V~~~R~~~ 126 (338)
=|+|||-++.+|.+.|.+. |..+-+| - ...-..++.-+-+|++.+- |+ +++.+...
T Consensus 13 sgsGKsTlA~aL~~~L~~~~~G~~~~~L-D---------------GdniRr~~~vA~ll~~~G~iviva~isP~ei~~ 74 (120)
T 1g8f_A 13 LTVSREQLSIALLSTFLQFGGGRYYKIF-E---------------HNNKTELLSLIQDFIGSGSGLIIPDQWEDDKDS 74 (120)
T ss_dssp CCSCHHHHHHHHHHHHTTSCSCCCEEEC-C---------------CTTCHHHHTTHHHHHHTTCEEEESSCCCGGGGG
T ss_pred CCCCHHHHHHHHHHHHHHCCCCEEEEEC-C---------------CCCCHHHHHHHHHHHHCCCEEEECCCCCCCHHH
T ss_conf 9988899999999999860685588731-5---------------587433789999997359637964898761110
No 118
>>2qby_A CDC6 homolog 1, cell division control protein 6 homolog 1; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus} (A:1-196)
Probab=72.01 E-value=2 Score=23.17 Aligned_cols=28 Identities=29% Similarity=0.386 Sum_probs=21.8
Q ss_pred EEEECCEEECCCCCCHHHHHHHHHHHHCCCC
Q ss_conf 8998230007888748999999998524731
Q gi|254780401|r 46 VICVGGFVMGGTGKTPTALAIAKAVIDKNLK 76 (338)
Q Consensus 46 VI~VGNitvGGtGKTP~v~~l~~~l~~~g~~ 76 (338)
|+-.| -+|||||.++..+++.+......
T Consensus 48 vli~G---ppG~GKT~la~~ia~~~~~~~~~ 75 (196)
T 2qby_A 48 IFIYG---LTGTGKTAVVKFVLSKLHKKFLG 75 (196)
T ss_dssp EEEEE---CTTSSHHHHHHHHHHHHHHHTCS
T ss_pred EEEEC---CCCCCHHHHHHHHHHHHHHCCCC
T ss_conf 89989---99781999999999986520389
No 119
>>2yvu_A Probable adenylyl-sulfate kinase; transferase, structural genomics, NPPSFA, national project on protein structural and functional analyses; 2.10A {Aeropyrum pernix K1} (A:)
Probab=71.84 E-value=2.7 Score=22.28 Aligned_cols=39 Identities=26% Similarity=0.350 Sum_probs=31.2
Q ss_pred EEEECCEEECCCCCCHHHHHHHHHHHHCCCCEEEEEECCCCC
Q ss_conf 899823000788874899999999852473159876045787
Q gi|254780401|r 46 VICVGGFVMGGTGKTPTALAIAKAVIDKNLKPGFLSRGYGRK 87 (338)
Q Consensus 46 VI~VGNitvGGtGKTP~v~~l~~~l~~~g~~~~ilsRGYg~~ 87 (338)
|+.+|- -|+|||-++..|++.|...++.+..+.+.+.+.
T Consensus 16 I~i~G~---~GsGKTT~a~~La~~l~~~~~~~~~~~~~~~~~ 54 (186)
T 2yvu_A 16 VWLTGL---PGSGKTTIATRLADLLQKEGYRVEVLDGDWART 54 (186)
T ss_dssp EEEECC---TTSSHHHHHHHHHHHHHHTTCCEEEEEHHHHHT
T ss_pred EEEECC---CCCCHHHHHHHHHHHHHHCCCCCHHHHHHHHHH
T ss_conf 997899---999999999999999713178703667888765
No 120
>>2z0h_A DTMP kinase, thymidylate kinase; ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics, NPPSFA; HET: ADP TYD; 2.10A {Thermotoga maritima} PDB: 3hjn_A* (A:)
Probab=71.60 E-value=4.5 Score=20.72 Aligned_cols=33 Identities=18% Similarity=0.205 Sum_probs=27.3
Q ss_pred CCCCCCHHHHHHHHHHHHCCCCEEEEEECCCCC
Q ss_conf 788874899999999852473159876045787
Q gi|254780401|r 55 GGTGKTPTALAIAKAVIDKNLKPGFLSRGYGRK 87 (338)
Q Consensus 55 GGtGKTP~v~~l~~~l~~~g~~~~ilsRGYg~~ 87 (338)
-|+|||-++..|++.+...+..+.....-++..
T Consensus 9 ~GsGKsTla~~L~~~~~~~~~~~~~~~~~~~~~ 41 (197)
T 2z0h_A 9 DGSGKSTQIQLLAQYLEKRGKKVILKREPGGTE 41 (197)
T ss_dssp TTSSHHHHHHHHHHHHHHCCC-EEEEESSCSSH
T ss_pred CCCCHHHHHHHHHHHHHHCCCCEEEEECCCCCC
T ss_conf 879999999999999997799889986899974
No 121
>>1vm6_A DHPR, dihydrodipicolinate reductase; TM1520, structural genomics, JCSG, protein structure initiative, PSI; HET: NAD PG4; 2.27A {Thermotoga maritima} (A:1-109,A:196-228)
Probab=71.33 E-value=3.7 Score=21.31 Aligned_cols=33 Identities=18% Similarity=0.219 Sum_probs=26.7
Q ss_pred EECCCCCCHHHHHHHHHHHHCCCCEEEEEECCCCC
Q ss_conf 00788874899999999852473159876045787
Q gi|254780401|r 53 VMGGTGKTPTALAIAKAVIDKNLKPGFLSRGYGRK 87 (338)
Q Consensus 53 tvGGtGKTP~v~~l~~~l~~~g~~~~ilsRGYg~~ 87 (338)
.+|+||+. =.++++.|.++|+++..++|-....
T Consensus 17 I~GAtG~i--Gr~iv~~Ll~~G~~Vvaivr~~~~~ 49 (142)
T 1vm6_A 17 IVGYSGRM--GQEIQKVFSEKGHELVLKVDVNGVE 49 (142)
T ss_dssp EETTTSHH--HHHHHHHHHHTTCEEEEEEETTEEE
T ss_pred EECCCCHH--HHHHHHHHHCCCCEEEEEECCCCHH
T ss_conf 99998979--9999999966999599997888377
No 122
>>2v6i_A RNA helicase; membrane, hydrolase, transmembrane, RNA replication, viral replication, nucleotide-binding; 2.10A {Kokobera virus} PDB: 2v6j_A (A:1-140,A:295-379)
Probab=71.25 E-value=4.6 Score=20.67 Aligned_cols=27 Identities=26% Similarity=0.442 Sum_probs=23.0
Q ss_pred CCCCCCH-HHHHHHHHHHHCCCCEEEEE
Q ss_conf 7888748-99999999852473159876
Q gi|254780401|r 55 GGTGKTP-TALAIAKAVIDKNLKPGFLS 81 (338)
Q Consensus 55 GGtGKTP-~v~~l~~~l~~~g~~~~ils 81 (338)
=|||||= +..++++.+.+.|.++.+|+
T Consensus 11 TGSGKT~~~~~~ii~~~~~~g~rvLvLa 38 (225)
T 2v6i_A 11 PGAGKTRRVLPQLVREAVKKRLRTVILA 38 (225)
T ss_dssp TTSCTTTTHHHHHHHHHHHTTCCEEEEE
T ss_pred CCCCHHHHHHHHHHHHHHCCCCEEEEEH
T ss_conf 9878889999999998762798599993
No 123
>>1hqc_A RUVB; extended AAA-ATPase domain, complex with nucleotide, hydrolase; HET: ADE; 3.20A {Thermus thermophilus} (A:1-167)
Probab=71.24 E-value=2.3 Score=22.73 Aligned_cols=29 Identities=28% Similarity=0.232 Sum_probs=20.7
Q ss_pred CCCCEEEECCEEECCCCCCHHHHHHHHHHHHC
Q ss_conf 88988998230007888748999999998524
Q gi|254780401|r 42 APIPVICVGGFVMGGTGKTPTALAIAKAVIDK 73 (338)
Q Consensus 42 ~~~pVI~VGNitvGGtGKTP~v~~l~~~l~~~ 73 (338)
.+-.++-.|= -|||||-++.++|+.+...
T Consensus 37 ~~~~iLl~Gp---pGtGKT~lA~alA~~~~~~ 65 (167)
T 1hqc_A 37 PLEHLLLFGP---PGLGKTTLAHVIAHELGVN 65 (167)
T ss_dssp CCCCCEEECC---TTCCCHHHHHHHHHHHTCC
T ss_pred CCCEEEEECC---CCCCHHHHHHHHHHHHCCC
T ss_conf 8875998898---9988999999999986889
No 124
>>3b85_A Phosphate starvation-inducible protein; PHOH2, ATPase, PFAM: PF02562, structural genomics, PSI-2; 2.35A {Corynebacterium glutamicum atcc 13032} (A:1-194)
Probab=71.21 E-value=4.6 Score=20.63 Aligned_cols=26 Identities=27% Similarity=0.313 Sum_probs=20.3
Q ss_pred CCCCCCHHHHHHHHHHHHCCCCEEEE
Q ss_conf 78887489999999985247315987
Q gi|254780401|r 55 GGTGKTPTALAIAKAVIDKNLKPGFL 80 (338)
Q Consensus 55 GGtGKTP~v~~l~~~l~~~g~~~~il 80 (338)
-|||||=++..++..|...+....++
T Consensus 31 ~GtGKT~lA~~la~~l~~~~~~~~~~ 56 (194)
T 3b85_A 31 AGSGKTYLAXAKAVQALQSKQVSRII 56 (194)
T ss_dssp TTSSTTHHHHHHHHHHHHTTSCSEEE
T ss_pred CCCCHHHHHHHHHHHHHHCCCCCEEE
T ss_conf 99739999999999876314510156
No 125
>>2zan_A Vacuolar protein sorting-associating protein 4B; SKD1, VPS4B, AAA ATPase, ATP-binding, coiled coil, membrane, nucleotide-binding, phosphorylation; HET: ATP; 3.00A {Mus musculus} PDB: 2zam_A* 2zao_A* 2jqh_A 2jqk_A 1wr0_A 2jq9_A 2k3w_A 1yxr_A (A:1-300)
Probab=71.19 E-value=5.6 Score=20.05 Aligned_cols=34 Identities=18% Similarity=0.153 Sum_probs=21.0
Q ss_pred CCCCCHHHHHHHHHHHHHCCC-EEEECHHHHHHCC
Q ss_conf 234898999999997564798-7998546634382
Q gi|254780401|r 257 HAHLSDKKIAYLLDQAQQKGL-ILVTTAKDAMRLH 290 (338)
Q Consensus 257 Hh~ys~~dl~~i~~~a~~~~~-~iiTTEKD~VKL~ 290 (338)
+.--+++.+..+++.|..... .|.-=|=|++...
T Consensus 208 ~~G~~~~~i~~~F~~a~~~~p~iif~de~d~~~~~ 242 (300)
T 2zan_A 208 WLGESEKLVKNLFQLARENKPSIIFIDEIDSLCGS 242 (300)
T ss_dssp ----CCCTHHHHHHHHHHSCSEEEEESCTTTTCCC
T ss_pred CCCHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHCC
T ss_conf 32449999999999998708752111023343115
No 126
>>1gm5_A RECG; helicase, replication restart; HET: DNA ADP; 3.24A {Thermotoga maritima} (A:347-549)
Probab=71.13 E-value=7.5 Score=19.11 Aligned_cols=27 Identities=22% Similarity=0.293 Sum_probs=15.6
Q ss_pred CCCCCCHHHHHHHHHHHHCCCCEEEEE
Q ss_conf 788874899999999852473159876
Q gi|254780401|r 55 GGTGKTPTALAIAKAVIDKNLKPGFLS 81 (338)
Q Consensus 55 GGtGKTP~v~~l~~~l~~~g~~~~ils 81 (338)
-|+|||=+....+....+++.++.|++
T Consensus 52 TGsGKT~~~~l~~~~~~~~~~~~lil~ 78 (203)
T 1gm5_A 52 VGSGKTVVAQLAILDNYEAGFQTAFMV 78 (203)
T ss_dssp SSSSHHHHHHHHHHHHHHHTSCEEEEC
T ss_pred CCCCCEEEEHHHHHHHHHCCCCEEEEE
T ss_conf 898670522844899996389789993
No 127
>>2qm8_A GTPase/ATPase; G protein, G3E, metallochaperone; HET: MSE; 1.70A {Methylobacterium extorquens AM1} (A:)
Probab=71.12 E-value=7.5 Score=19.11 Aligned_cols=137 Identities=15% Similarity=0.060 Sum_probs=66.8
Q ss_pred CCCEE-EECCEEECCCCCCHHHHHHHHHHHHCCCCEEEEEECCCCCCCCCEEEECCCCCHHHHCCHHHHHHHCC------
Q ss_conf 89889-98230007888748999999998524731598760457877775587145678877042123322057------
Q gi|254780401|r 43 PIPVI-CVGGFVMGGTGKTPTALAIAKAVIDKNLKPGFLSRGYGRKSRISFRVDLEKHSAYDVGDEPLLLARRA------ 115 (338)
Q Consensus 43 ~~pVI-~VGNitvGGtGKTP~v~~l~~~l~~~g~~~~ilsRGYg~~~~~~~~v~~~~~~~~~vGDEp~lla~~~------ 115 (338)
+.++| .||. -|+|||-++-.|++.+...|.++++++..-+.......... .-.+-|.......+
T Consensus 54 ~~~~V~ivG~---pnaGKSTLln~L~~~~~~~~~~~~~v~~~~~~t~~~~~~~~------~~~~~~~~~~~~~~~~~~~d 124 (337)
T 2qm8_A 54 RAIRVGITGV---PGVGKSTTIDALGSLLTAAGHKVAVLAVDPSSTRTGGSILG------DKTRXARLAIDRNAFIRPSP 124 (337)
T ss_dssp CSEEEEEECC---TTSCHHHHHHHHHHHHHHTTCCEEEEEECGGGGSSCCCSSC------CGGGSTTGGGCTTEEEECCC
T ss_pred CCEEEECCCC---CCCCHHHHHHHHHHHHHCCCCCEEEEECCCCCCCCCCCCCH------HHHHHHHHHCCCCEEECCCC
T ss_conf 8249962289---99889999999999985189831111035664120323750------56789987424541331552
Q ss_pred CCCCCCCHHH----HHHHHCCCCCCEEEE--C--CC-CCCCCCCCEEEEEEECCCCCCCCCCCCCCHHHHHCCHHHHHHH
Q ss_conf 6346520122----566410245747997--1--83-2234412306999961843356655376136521002556651
Q gi|254780401|r 116 VTIVTSDRKI----GVQMLLQEGVDIIIM--D--DG-FHSADLQADFSLIVVNSHRGLGNGLVFPAGPLRVPLSRQLSYV 186 (338)
Q Consensus 116 pv~V~~~R~~----~~~~~~~~~~diiIl--D--DG-fQh~~l~rdl~Ivl~d~~~~~gn~~llPaGpLREp~~~~l~ra 186 (338)
...++..... +...+.....|.+++ + ++ ........+...++.+.......-. .. .. ...++
T Consensus 125 ~~g~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~-------~~-~~-~~~~~ 195 (337)
T 2qm8_A 125 SSGTLGGVAAKTRETXLLCEAAGFDVILVETVGVGQSETAVADLTDFFLVLXLPGAGDELQG-------IK-KG-IFELA 195 (337)
T ss_dssp CCSSHHHHHHHHHHHHHHHHHTTCCEEEEEECSSSSCHHHHHTTSSEEEEEECSCC-------------CC-TT-HHHHC
T ss_pred CCCCCCCHHHHHHHHHHHHHCCCCCEEEEECCHHHCCCCHHCCCCEEEEEEECCCCCCHHHH-------HC-HH-HHHHH
T ss_conf 23542211676799998751179864888533343031010367628999832554234666-------22-05-75420
Q ss_pred HHHHHCCCCHH
Q ss_conf 45442044124
Q gi|254780401|r 187 DAILYVGNKKN 197 (338)
Q Consensus 187 d~vi~~~~~~~ 197 (338)
+.+++++.+.-
T Consensus 196 ~~i~~nK~D~~ 206 (337)
T 2qm8_A 196 DXIAVNKADDG 206 (337)
T ss_dssp SEEEEECCSTT
T ss_pred HEEEEECCCCC
T ss_conf 03577410255
No 128
>>1g41_A Heat shock protein HSLU; AAA-ATPase, CLPY, ATP-dependent proteolysis, chaperone; HET: ADP; 2.30A {Haemophilus influenzae} (A:1-335)
Probab=71.03 E-value=1.7 Score=23.69 Aligned_cols=40 Identities=30% Similarity=0.308 Sum_probs=24.9
Q ss_pred CCCCEEEECCEEECCCCCCHHHHHHHHHHHHCCCCEEE------EEECCCCC
Q ss_conf 88988998230007888748999999998524731598------76045787
Q gi|254780401|r 42 APIPVICVGGFVMGGTGKTPTALAIAKAVIDKNLKPGF------LSRGYGRK 87 (338)
Q Consensus 42 ~~~pVI~VGNitvGGtGKTP~v~~l~~~l~~~g~~~~i------lsRGYg~~ 87 (338)
.+--++-.|- -|||||-++.+||+.+.. .... .+.||+++
T Consensus 49 ~~~~~Ll~GP---pGtGKT~lakalA~~l~~---~~~~i~~s~~~~~g~~~~ 94 (335)
T 1g41_A 49 TPKNILMIGP---TGVGKTEIARRLAKLANA---PFIKVEATKFTEVGYVGK 94 (335)
T ss_dssp CCCCEEEECC---TTSSHHHHHHHHHHHTTC---CEEEEEGGGGC----CCC
T ss_pred CCCCEEEECC---CCCCHHHHHHHHHHHHCC---CEEEEECCCEEEEEECCC
T ss_conf 6552799899---998899999999998589---879850561033000257
No 129
>>2fi1_A Hydrolase, haloacid dehalogenase-like family; structural genomics, PSI, protein structure initiative; 1.40A {Streptococcus pneumoniae TIGR4} (A:1-16,A:83-190)
Probab=70.64 E-value=4.6 Score=20.64 Aligned_cols=89 Identities=17% Similarity=0.176 Sum_probs=54.0
Q ss_pred ECCCCCCHHHHHHHHHHHHCCCCEEEEEECCCCCC--------CCCE-EEECCCCCHHHHC-----CHHHHHHH--C--C
Q ss_conf 07888748999999998524731598760457877--------7755-8714567887704-----21233220--5--7
Q gi|254780401|r 54 MGGTGKTPTALAIAKAVIDKNLKPGFLSRGYGRKS--------RISF-RVDLEKHSAYDVG-----DEPLLLAR--R--A 115 (338)
Q Consensus 54 vGGtGKTP~v~~l~~~l~~~g~~~~ilsRGYg~~~--------~~~~-~v~~~~~~~~~vG-----DEp~lla~--~--~ 115 (338)
.||| =-|=+.-+.+.|+++|++++|+|.+..... ...+ .+. ++.+++ -|.+..+. . .
T Consensus 13 ~~~~-l~pgv~e~L~~Lk~~g~~~~i~Sn~~~~~~~~l~~~~l~~~fd~i~----~~~~~~~~Kp~~~~~~~a~~~l~~~ 87 (124)
T 2fi1_A 13 LGGT-LFEGVSDLLEDISNQGGRHFLVSHRNDQVLEILEKTSIAAYFTEVV----TSSSGFKRKPNPESMLYLREKYQIS 87 (124)
T ss_dssp TBTT-BCTTHHHHHHHHHHTTCEEEEECSSCTHHHHHHHHTTCGGGEEEEE----CGGGCCCCTTSCHHHHHHHHHTTCS
T ss_pred CCCC-CCCHHHHHHHHHHCCCEEEEECCCCCCCCCCCCCCCCCCCCCCCCC----CCCCCCCCCCHHHHHHHHHHHCCCC
T ss_conf 8997-5620699986400120121202322222222223333222222222----2222344563299999999975999
Q ss_pred CCCCCCCHHHHHHHHCCCCCCEEEECCCCCCC
Q ss_conf 63465201225664102457479971832234
Q gi|254780401|r 116 VTIVTSDRKIGVQMLLQEGVDIIIMDDGFHSA 147 (338)
Q Consensus 116 pv~V~~~R~~~~~~~~~~~~diiIlDDGfQh~ 147 (338)
++++-.|+...++.+.+.+...|...+|.+..
T Consensus 88 ~~l~VgD~~~Di~aA~~aGi~~i~v~~g~~~~ 119 (124)
T 2fi1_A 88 SGLVIGDRPIDIEAGQAAGLDTHLFTSIVNLR 119 (124)
T ss_dssp SEEEEESSHHHHHHHHHTTCEEEECSCHHHHH
T ss_pred CEEEECCCHHHHHHHHHCCCEEEEECCCCCHH
T ss_conf 76999079999999998599799999988737
No 130
>>1w36_B RECB, exodeoxyribonuclease V beta chain; recombination, helicase, hydrolase, DNA repair; HET: DNA; 3.1A {Escherichia coli} (B:1-148,B:349-443)
Probab=70.56 E-value=1.9 Score=23.44 Aligned_cols=39 Identities=21% Similarity=0.059 Sum_probs=29.2
Q ss_pred CCEEEECCEEECCCCCCHHHHHHHHHHHHCCCCEEEEEECCC
Q ss_conf 988998230007888748999999998524731598760457
Q gi|254780401|r 44 IPVICVGGFVMGGTGKTPTALAIAKAVIDKNLKPGFLSRGYG 85 (338)
Q Consensus 44 ~pVI~VGNitvGGtGKTP~v~~l~~~l~~~g~~~~ilsRGYg 85 (338)
-|++..|- =|||||-+....+..|...|..+....++..
T Consensus 17 ~~~lI~G~---pGTGKT~tl~~~i~~ll~~~~~~~~~~~~~~ 55 (243)
T 1w36_B 17 GERLIEAS---AGTGKTFTIAALYLRLLLGLGGSAAFPRPLT 55 (243)
T ss_dssp SCEEEECC---TTSCHHHHHHHHHHHHHTTCSSSSSCSSCCC
T ss_pred CCEEEEEE---CCCHHHHHHHHHHHHHHHCCCCCCCCCCCCC
T ss_conf 99799993---7304889999999999841764433457999
No 131
>>2qby_B CDC6 homolog 3, cell division control protein 6 homolog 3; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus} (B:1-196)
Probab=70.47 E-value=2.3 Score=22.77 Aligned_cols=27 Identities=26% Similarity=0.367 Sum_probs=20.7
Q ss_pred CCEEEECCEEECCCCCCHHHHHHHHHHHHC
Q ss_conf 988998230007888748999999998524
Q gi|254780401|r 44 IPVICVGGFVMGGTGKTPTALAIAKAVIDK 73 (338)
Q Consensus 44 ~pVI~VGNitvGGtGKTP~v~~l~~~l~~~ 73 (338)
-.++-.| -+|||||-++.++++.+...
T Consensus 46 ~~ili~G---ppGtGKT~la~~i~~~~~~~ 72 (196)
T 2qby_B 46 FSNLFLG---LTGTGKTFVSKYIFNEIEEV 72 (196)
T ss_dssp CEEEEEE---CTTSSHHHHHHHHHHHHHHH
T ss_pred CCEEEEC---CCCCCHHHHHHHHHHHHHHH
T ss_conf 8658987---99884999999999997531
No 132
>>1pfk_A Phosphofructokinase; transferase(phosphotransferase); HET: FBP ADP; 2.40A {Escherichia coli} (A:1-132,A:254-306)
Probab=70.43 E-value=5.1 Score=20.34 Aligned_cols=111 Identities=16% Similarity=0.184 Sum_probs=66.5
Q ss_pred ECCEEECCC--CCCHHHHHHHHHHHHCCCCEEEEEECCCCCCCCCEEEECCCC--CHHHHCCHHHHHHHCCC-CCCCCCH
Q ss_conf 823000788--874899999999852473159876045787777558714567--88770421233220576-3465201
Q gi|254780401|r 49 VGGFVMGGT--GKTPTALAIAKAVIDKNLKPGFLSRGYGRKSRISFRVDLEKH--SAYDVGDEPLLLARRAV-TIVTSDR 123 (338)
Q Consensus 49 VGNitvGGt--GKTP~v~~l~~~l~~~g~~~~ilsRGYg~~~~~~~~v~~~~~--~~~~vGDEp~lla~~~p-v~V~~~R 123 (338)
||=+|.||- |=-..+..+++.+..+|+++.-+.+||.+-..+.+..-+..+ .....|--.+ -..+++ .---.++
T Consensus 5 I~IltsGGdaPGlNa~Ir~vv~~a~~~g~~v~G~~~G~~GL~~~~~~~l~~~~v~~i~~~GGt~L-gtsR~~~~~~~~~~ 83 (185)
T 1pfk_A 5 IGVLTSGGDAPGMNAAIRGVVRSALTEGLEVMGIYDGYLGLYEDRMVQLDRYSVSDMINRGGTFL-GSARFPEFRDENIR 83 (185)
T ss_dssp EEEEECSSCCTTHHHHHHHHHHHHHHTTCEEEEESTHHHHHHTTCEEEECSGGGTTCTTCCSCTT-CCCCCGGGGSHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHHHHHHHCCCEEEEECCCHHHHCCCCEEECCHHHHHHHHHCCCCEE-CCCCCCCCCCHHHH
T ss_conf 99986588867789999999999987799999991667887279868689999977985799722-47788866657788
Q ss_pred HHHHHHHCCCCCCEEEE---CCCCCCCCCC--CEEEEEEECC
Q ss_conf 22566410245747997---1832234412--3069999618
Q gi|254780401|r 124 KIGVQMLLQEGVDIIIM---DDGFHSADLQ--ADFSLIVVNS 160 (338)
Q Consensus 124 ~~~~~~~~~~~~diiIl---DDGfQh~~l~--rdl~Ivl~d~ 160 (338)
.++++.+.+.+.|.+|. ||-++--..- -++.++.+..
T Consensus 84 ~~~~~~l~~~~Id~LivIGGdgS~~~a~~L~e~gi~vvgiPk 125 (185)
T 1pfk_A 84 AVAIENLKKRGIDALVVIGGDGSYMGAMRLTEMGFPCIGLPG 125 (185)
T ss_dssp HHHHHHHHHTTCCEEEEEECHHHHHHHHHHHHTTCCEEEEEB
T ss_pred HHHHHHHHHCCCCEEEEECCCHHHHHHHHHHHCCCCEEEEEE
T ss_conf 899999997699889993693689999997643674331211
No 133
>>2p65_A Hypothetical protein PF08_0063; CLPB, malaria, structural genomics, structural genomics consortium, SGC, unknown function; 1.70A {Plasmodium falciparum} (A:)
Probab=70.36 E-value=2.1 Score=23.06 Aligned_cols=29 Identities=24% Similarity=0.381 Sum_probs=21.7
Q ss_pred CCEEEECCEEECCCCCCHHHHHHHHHHHHCCC
Q ss_conf 98899823000788874899999999852473
Q gi|254780401|r 44 IPVICVGGFVMGGTGKTPTALAIAKAVIDKNL 75 (338)
Q Consensus 44 ~pVI~VGNitvGGtGKTP~v~~l~~~l~~~g~ 75 (338)
-.++-+|= =|||||-++..||+.|....+
T Consensus 44 ~~iLl~GP---pGtGKTtla~ala~~l~~~~~ 72 (187)
T 2p65_A 44 NNPILLGD---PGVGKTAIVEGLAIKIVQGDV 72 (187)
T ss_dssp CEEEEESC---GGGCHHHHHHHHHHHHHTTCS
T ss_pred CCEEEECC---CCCCHHHHHHHHHHHHHHCCC
T ss_conf 78068647---640147999999999982899
No 134
>>1gtv_A TMK, thymidylate kinase; transferase, transferase (ATP:TMP phosphotransferase); HET: TYD TMP; 1.55A {Mycobacterium tuberculosis} (A:)
Probab=70.02 E-value=1.7 Score=23.78 Aligned_cols=32 Identities=16% Similarity=0.035 Sum_probs=28.1
Q ss_pred CCCCCCHHHHHHHHHHHHCCCCEEEEEECCCC
Q ss_conf 78887489999999985247315987604578
Q gi|254780401|r 55 GGTGKTPTALAIAKAVIDKNLKPGFLSRGYGR 86 (338)
Q Consensus 55 GGtGKTP~v~~l~~~l~~~g~~~~ilsRGYg~ 86 (338)
-|+|||-++..|++.|...++.+..+.|....
T Consensus 9 ~GsGKST~a~~L~~~l~~~~i~~~~~~~~~~~ 40 (214)
T 1gtv_A 9 DGAGKRTLVEKLSGAFRAAGRSVATLAFPRYG 40 (214)
T ss_dssp EEEEHHHHHHHHHHHHHEEEEEEEEEESSEEE
T ss_pred CCCCHHHHHHHHHHHHHHCCCCEEEEECCCCC
T ss_conf 87889999999999998789978998469999
No 135
>>3ld9_A DTMP kinase, thymidylate kinase; ssgcid, NIH, niaid, SBRI, UW, emerald biostructures, ALS collaborative crystallography, ATP-binding; 2.15A {Ehrlichia chaffeensis} (A:)
Probab=70.01 E-value=2.9 Score=22.07 Aligned_cols=40 Identities=15% Similarity=0.012 Sum_probs=32.0
Q ss_pred CEEEECCEEECCCCCCHHHHHHHHHHHHCCCCEEEEEECCCCC
Q ss_conf 8899823000788874899999999852473159876045787
Q gi|254780401|r 45 PVICVGGFVMGGTGKTPTALAIAKAVIDKNLKPGFLSRGYGRK 87 (338)
Q Consensus 45 pVI~VGNitvGGtGKTP~v~~l~~~l~~~g~~~~ilsRGYg~~ 87 (338)
-|...|+. |+|||-++..|++.|...+..+..+.|-+...
T Consensus 23 ~I~i~G~~---GsGKST~~~~L~~~l~~~~~~~~~~~~~~~~~ 62 (223)
T 3ld9_A 23 FITFEGID---GSGKTTQSHLLAEYLSEIYGVNNVVLTREPGG 62 (223)
T ss_dssp EEEEECST---TSSHHHHHHHHHHHHHHHHCGGGEEEEESSCS
T ss_pred EEEEECCC---CCCHHHHHHHHHHHHHHCCCCCEEEEEECCCC
T ss_conf 89988998---89999999999999886389854997408998
No 136
>>1cqx_A Flavohemoprotein; globin fold, six-stranded antiparallel beta sheet, helix- flanked five-stranded parallel beta sheet, lipid binding protein; HET: HEM FAD DGG; 1.75A {Ralstonia eutropha} (A:261-403)
Probab=69.96 E-value=3.6 Score=21.37 Aligned_cols=33 Identities=24% Similarity=0.426 Sum_probs=26.3
Q ss_pred CCEEEECCEEECCCCCCHHHHHHHHHHHHCCCCEEEE
Q ss_conf 9889982300078887489999999985247315987
Q gi|254780401|r 44 IPVICVGGFVMGGTGKTPTALAIAKAVIDKNLKPGFL 80 (338)
Q Consensus 44 ~pVI~VGNitvGGtGKTP~v~~l~~~l~~~g~~~~il 80 (338)
-++|. ..||||=||+...+-..+.+.+-++..+
T Consensus 7 ~~lv~----iagG~GItP~~s~l~~l~~~~~~~v~l~ 39 (143)
T 1cqx_A 7 TPIVL----ISGGVGLTPMVSMLKVALQAPPRQVVFV 39 (143)
T ss_dssp SCEEE----EESSCCHHHHHHHHHHHTCSSCCCEEEE
T ss_pred CEEEE----EEECCCCCCHHHHHHHHHHCCCCHHHHC
T ss_conf 31699----9925875227899998876044302312
No 137
>>1fnn_A CDC6P, cell division control protein 6; ORC1, AAA protein, DNA replication initation factor, cell cycle control factor; HET: ADP; 2.00A {Pyrobaculum aerophilum} (A:1-192)
Probab=69.62 E-value=4.2 Score=20.93 Aligned_cols=28 Identities=32% Similarity=0.297 Sum_probs=20.9
Q ss_pred EEEECCEEECCCCCCHHHHHHHHHHHHCCCC
Q ss_conf 8998230007888748999999998524731
Q gi|254780401|r 46 VICVGGFVMGGTGKTPTALAIAKAVIDKNLK 76 (338)
Q Consensus 46 VI~VGNitvGGtGKTP~v~~l~~~l~~~g~~ 76 (338)
++-.|- .|||||-++.++++.+...-..
T Consensus 47 ili~Gp---pGtGKT~~a~~ia~~l~~~~~~ 74 (192)
T 1fnn_A 47 ATLLGR---PGTGKTVTLRKLWELYKDKTTA 74 (192)
T ss_dssp EEEECC---TTSSHHHHHHHHHHHHTTSCCC
T ss_pred EEEECC---CCCCHHHHHHHHHHHHHHHCCC
T ss_conf 799859---9881999999999997763688
No 138
>>2oca_A DAR protein, ATP-dependent DNA helicase UVSW; ATP-dependant helicase, T4-bacteriophage, recombination, hydrolase; 2.70A {Enterobacteria phage T4} (A:88-289)
Probab=68.76 E-value=7 Score=19.33 Aligned_cols=125 Identities=7% Similarity=-0.055 Sum_probs=59.1
Q ss_pred ECCCCCCHHHHHHHHHHHHC-CCCEEEEEECCCCCCCCCEEEECCCCCHHHHCCHHHHHHHCCCCCCCCC----HHHHHH
Q ss_conf 07888748999999998524-7315987604578777755871456788770421233220576346520----122566
Q gi|254780401|r 54 MGGTGKTPTALAIAKAVIDK-NLKPGFLSRGYGRKSRISFRVDLEKHSAYDVGDEPLLLARRAVTIVTSD----RKIGVQ 128 (338)
Q Consensus 54 vGGtGKTP~v~~l~~~l~~~-g~~~~ilsRGYg~~~~~~~~v~~~~~~~~~vGDEp~lla~~~pv~V~~~----R~~~~~ 128 (338)
-=|||||=+.+..+...... +.+..++. +......+.=+|..-......+.+... ......
T Consensus 49 ~tGsGKT~~~~~~~~~~~~~~~~~~~ii~--------------p~~~l~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 114 (202)
T 2oca_A 49 PTSAGRSLIQALLARYYLENYEGKILIIV--------------PTTALTTQMADDFVDYRLFSHAMIKKIGGGASKDDKY 114 (202)
T ss_dssp CSTTTHHHHHHHHHHHHHHHCSSEEEEEE--------------SSHHHHHHHHHHHHHTTSSCGGGEEECGGGCCTTGGG
T ss_pred CCCCHHHHHHHHHHHHHHHCCCCEEEEEC--------------CCHHHHHHHHHHHHHHCCCCCCCEEEECCCCCEEEEC
T ss_conf 55502568999999987624786599972--------------7577999999999875235422203542665200002
Q ss_pred HHCCCCCCEEEECCCCCCCCCCCEEEEEEECCCCCCCCCCCCCCHHHHHCCHHHHHHHHHHHHCCCCHHH
Q ss_conf 4102457479971832234412306999961843356655376136521002556651454420441245
Q gi|254780401|r 129 MLLQEGVDIIIMDDGFHSADLQADFSLIVVNSHRGLGNGLVFPAGPLRVPLSRQLSYVDAILYVGNKKNV 198 (338)
Q Consensus 129 ~~~~~~~diiIlDDGfQh~~l~rdl~Ivl~d~~~~~gn~~llPaGpLREp~~~~l~rad~vi~~~~~~~~ 198 (338)
.-........+.+...+......+++.+++|-..-+ -.+.+++-+....+....+..|+.+.+.
T Consensus 115 ~~~~~~~~~~~~~~~~~~~~~~~~~~~iv~DEah~~------~~~~~~~~~~~~~~~~~~l~lTATp~~~ 178 (202)
T 2oca_A 115 KNDAPVVVGTWQTVVKQPKEWFSQFGMMMNDECHLA------TGKSISSIISGLNNCMFKFGLSGSLRDG 178 (202)
T ss_dssp CTTCSEEEEEHHHHTTSCGGGGGGEEEEEEETGGGC------CHHHHHHHGGGCTTCCEEEEEESCGGGC
T ss_pred CCCCEEEEEECCCHHHHHHHHCCCCCCCEEECCCCC------CCCCHHHHHHHCCCCCCCCCCCCCCCCC
T ss_conf 557619998332100123553024452000000112------3210100112104321001100233577
No 139
>>3hdt_A Putative kinase; structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG; 2.79A {Clostridium symbiosum atcc 14940} (A:)
Probab=68.45 E-value=0.81 Score=26.00 Aligned_cols=37 Identities=14% Similarity=0.149 Sum_probs=28.8
Q ss_pred CCCEEEE-CCEEECCCCCCHHHHHHHHHHHHCCCCEEEEEE
Q ss_conf 8988998-230007888748999999998524731598760
Q gi|254780401|r 43 PIPVICV-GGFVMGGTGKTPTALAIAKAVIDKNLKPGFLSR 82 (338)
Q Consensus 43 ~~pVI~V-GNitvGGtGKTP~v~~l~~~l~~~g~~~~ilsR 82 (338)
.-++|+| |.. |+|||-++..|++.|...++.+..+.+
T Consensus 13 ~~~~I~i~G~~---GsGKSTla~~L~~~l~~~~~~~~~~~~ 50 (223)
T 3hdt_A 13 KNLIITIEREY---GSGGRIVGKKLAEELGIHFYDDDILKL 50 (223)
T ss_dssp CCEEEEEEECT---TSCHHHHHHHHHHHHTCEEECHHHHHH
T ss_pred CCEEEEECCCC---CCCHHHHHHHHHHHHCCCEECCHHHHH
T ss_conf 99799845899---899799999999991997886189999
No 140
>>2chq_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATPase, ATP-binding, nucleotide-binding; HET: ANP; 3.5A {Archaeoglobus fulgidus} PDB: 2chv_A (A:1-160)
Probab=68.33 E-value=1.7 Score=23.77 Aligned_cols=31 Identities=35% Similarity=0.550 Sum_probs=24.0
Q ss_pred CCEEEECCEEECCCCCCHHHHHHHHHHHHCCCCE
Q ss_conf 9889982300078887489999999985247315
Q gi|254780401|r 44 IPVICVGGFVMGGTGKTPTALAIAKAVIDKNLKP 77 (338)
Q Consensus 44 ~pVI~VGNitvGGtGKTP~v~~l~~~l~~~g~~~ 77 (338)
-+++..|. -|||||.++..+|+.+......+
T Consensus 39 ~~~Ll~Gp---pGtGKT~~a~~la~~l~~~~~~~ 69 (160)
T 2chq_A 39 PHLLFSGP---PGTGKTATAIALARDLFGENWRD 69 (160)
T ss_dssp CCEEEESS---SSSSHHHHHHHHHHHHHTTCHHH
T ss_pred CEEEEECC---CCCCHHHHHHHHHHHHCCCCCCC
T ss_conf 77998897---99999999999998725454565
No 141
>>1uj2_A Uridine-cytidine kinase 2; alpha/beta mononucleotide-binding HOLD, transferase; HET: C5P ADP; 1.80A {Homo sapiens} (A:1-67,A:132-252)
Probab=68.13 E-value=5.9 Score=19.89 Aligned_cols=35 Identities=17% Similarity=0.132 Sum_probs=25.1
Q ss_pred EEECCEEECCCCCCHHHHHHHHHHHHCC-----CCEEEEE
Q ss_conf 9982300078887489999999985247-----3159876
Q gi|254780401|r 47 ICVGGFVMGGTGKTPTALAIAKAVIDKN-----LKPGFLS 81 (338)
Q Consensus 47 I~VGNitvGGtGKTP~v~~l~~~l~~~g-----~~~~ils 81 (338)
+.||=.-.-|+|||-++..|++.|...+ .+++++|
T Consensus 23 ~~i~i~G~~gsGKst~a~~l~~~l~~~~~~~~~~~~~~~~ 62 (188)
T 1uj2_A 23 FLIGVSGGTASGKSSVCAKIVQLLGQNEVDYRQKQVVILS 62 (188)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHHTTGGGSCGGGCSEEEEE
T ss_pred EEEEEECCCCCCHHHHHHHHHHHHCCCCCCCCCCCEEEEE
T ss_conf 9999889897788999999999966355555665404872
No 142
>>3bgw_A DNAB-like replicative helicase; ATPase, replication; 3.91A {Bacillus phage SPP1} (A:184-444)
Probab=68.12 E-value=4.3 Score=20.84 Aligned_cols=27 Identities=33% Similarity=0.257 Sum_probs=25.0
Q ss_pred CCCCCCHHHHHHHHHHHHCCCCEEEEE
Q ss_conf 788874899999999852473159876
Q gi|254780401|r 55 GGTGKTPTALAIAKAVIDKNLKPGFLS 81 (338)
Q Consensus 55 GGtGKTP~v~~l~~~l~~~g~~~~ils 81 (338)
-|+|||-++..++..+...+.++..++
T Consensus 23 ~G~GKT~l~~~l~~~~~~~~~~~~~~~ 49 (261)
T 3bgw_A 23 PSMGKTAFALKQAKNMSDNDDVVNLHS 49 (261)
T ss_dssp SSSSHHHHHHHHHHHHHHTTCEEEEEC
T ss_pred CCCCHHHHHHHHHHHHHCCCCEEEEEE
T ss_conf 665148999865577641588068751
No 143
>>3bh0_A DNAB-like replicative helicase; ATPase, replication; 2.35A {Bacillus phage SPP1} (A:50-315)
Probab=68.10 E-value=4.9 Score=20.47 Aligned_cols=28 Identities=32% Similarity=0.222 Sum_probs=25.3
Q ss_pred CCCCCCHHHHHHHHHHHHCCCCEEEEEE
Q ss_conf 7888748999999998524731598760
Q gi|254780401|r 55 GGTGKTPTALAIAKAVIDKNLKPGFLSR 82 (338)
Q Consensus 55 GGtGKTP~v~~l~~~l~~~g~~~~ilsR 82 (338)
=|+|||-++..++......|.++..+|-
T Consensus 28 ~G~GKT~l~~~~~~~~~~~g~~~~~~~~ 55 (266)
T 3bh0_A 28 PSMGKTAFALKQAKNMSDNDDVVNLHSL 55 (266)
T ss_dssp TTSSHHHHHHHHHHHHHTTTCEEEEEES
T ss_pred CCCHHHHHHHHHHHHHHHCCCCEEEEEC
T ss_conf 3441489999999987501472589622
No 144
>>2gk6_A Regulator of nonsense transcripts 1; UPF1, helicase, NMD, hydrolase; HET: ADP; 2.40A {Homo sapiens} PDB: 2gjk_A* 2gk7_A (A:146-408)
Probab=67.95 E-value=4.9 Score=20.45 Aligned_cols=28 Identities=29% Similarity=0.338 Sum_probs=24.0
Q ss_pred CCCCCHHHHHHHHHHHHCCCCEEEEEEC
Q ss_conf 8887489999999985247315987604
Q gi|254780401|r 56 GTGKTPTALAIAKAVIDKNLKPGFLSRG 83 (338)
Q Consensus 56 GtGKTP~v~~l~~~l~~~g~~~~ilsRG 83 (338)
|||||-+...++..+...+.++.+++..
T Consensus 60 GTGKT~ti~~ii~~ll~~~~~~~~~~~~ 87 (263)
T 2gk6_A 60 GTGKTVTSATIVYHLARQGNGPVLVCAP 87 (263)
T ss_dssp TSCHHHHHHHHHHHHHTSSSCCEEEEES
T ss_pred CCCHHHHHHHHHHHHHHHCCCCEEEEEC
T ss_conf 9888999999999987520212156506
No 145
>>3h1t_A Type I site-specific restriction-modification system, R (restriction) subunit; hydrolase, restriction enzyme HSDR, ATP-binding; 2.30A {Vibrio vulnificus} (A:170-361)
Probab=67.90 E-value=5.2 Score=20.27 Aligned_cols=22 Identities=32% Similarity=0.349 Sum_probs=18.1
Q ss_pred ECCCCCCHHHHHHHHHHHHCCC
Q ss_conf 0788874899999999852473
Q gi|254780401|r 54 MGGTGKTPTALAIAKAVIDKNL 75 (338)
Q Consensus 54 vGGtGKTP~v~~l~~~l~~~g~ 75 (338)
.-|+|||=++++++..+...+.
T Consensus 37 ~tGsGKT~~~~~~~~~~~~~~~ 58 (192)
T 3h1t_A 37 ATGTGKTVVAFQISWKLWSARW 58 (192)
T ss_dssp CTTSCHHHHHHHHHHHHHHTTC
T ss_pred CCCCCHHHHHHHHHHHHHHHHH
T ss_conf 7898415899999999998633
No 146
>>2vbc_A Dengue 4 NS3 FULL-length protein; transmembrane, RNA replication, NS2B-NS3 protease; 3.15A {Dengue virus type 4} (A:176-323,A:482-562)
Probab=67.89 E-value=4.7 Score=20.59 Aligned_cols=27 Identities=26% Similarity=0.455 Sum_probs=22.1
Q ss_pred CCCCCCHHH-HHHHHHHHHCCCCEEEEE
Q ss_conf 788874899-999999852473159876
Q gi|254780401|r 55 GGTGKTPTA-LAIAKAVIDKNLKPGFLS 81 (338)
Q Consensus 55 GGtGKTP~v-~~l~~~l~~~g~~~~ils 81 (338)
=|+|||=.+ ..+++.+.+.|.++.||.
T Consensus 20 TGsGKT~~~l~~i~~~~~~~~~rvLiLa 47 (229)
T 2vbc_A 20 PGAGKTKRILPSIVREALKRRLRTLILA 47 (229)
T ss_dssp TTTCCTTTHHHHHHHHHHHTTCCEEEEE
T ss_pred CCCCHHHHHHHHHHHHHHCCCCEEEEEH
T ss_conf 9879989999999997255799999985
No 147
>>2qxy_A Response regulator; regulation of transcription, NYSGXRC, protein structure initiative II (PSI II), structural genomics; 1.95A {Thermotoga maritima} (A:)
Probab=67.79 E-value=3.2 Score=21.72 Aligned_cols=48 Identities=15% Similarity=0.250 Sum_probs=39.1
Q ss_pred CCCCCCCCHHHHHHHHCCCCCCEEEEC-----CCCCC----CCCCCEEEEEEECCCC
Q ss_conf 763465201225664102457479971-----83223----4412306999961843
Q gi|254780401|r 115 AVTIVTSDRKIGVQMLLQEGVDIIIMD-----DGFHS----ADLQADFSLIVVNSHR 162 (338)
Q Consensus 115 ~pv~V~~~R~~~~~~~~~~~~diiIlD-----DGfQh----~~l~rdl~Ivl~d~~~ 162 (338)
+.|..+.+-.+|.+.+.+..+|+||+| ||++- ++..++.-|+++.+..
T Consensus 29 ~~v~~a~~g~eAl~~~~~~~~dliilD~mp~~dG~e~~~~ir~~~~~~pii~lT~~~ 85 (142)
T 2qxy_A 29 FNVIWAKNEQEAFTFLRREKIDLVFVDVFEGEESLNLIRRIREEFPDTKVAVLSAYV 85 (142)
T ss_dssp CEEEEESSHHHHHHHHTTSCCSEEEEECTTTHHHHHHHHHHHHHCTTCEEEEEESCC
T ss_pred CEEEEECCHHHHHHHHHHCCCCEEEECCCCCHHHHHHHHHHHHHCCCCCEEEEECCC
T ss_conf 999997657999999983188899723577504999999999978999789997458
No 148
>>2wjy_A Regulator of nonsense transcripts 1; alternative splicing, nonsense mediated decay, zinc-finger, ATP-binding, polymorphism, metal-binding, UPF2; 2.50A {Homo sapiens} PDB: 2wjv_A 2iyk_A (A:322-584)
Probab=67.74 E-value=4.9 Score=20.45 Aligned_cols=28 Identities=29% Similarity=0.338 Sum_probs=24.0
Q ss_pred CCCCCHHHHHHHHHHHHCCCCEEEEEEC
Q ss_conf 8887489999999985247315987604
Q gi|254780401|r 56 GTGKTPTALAIAKAVIDKNLKPGFLSRG 83 (338)
Q Consensus 56 GtGKTP~v~~l~~~l~~~g~~~~ilsRG 83 (338)
|||||-+...++..+...+.++.+++..
T Consensus 60 GTGKT~ti~~ii~~ll~~~~~~~~~~~~ 87 (263)
T 2wjy_A 60 GTGKTVTSATIVYHLARQGNGPVLVCAP 87 (263)
T ss_dssp TSCHHHHHHHHHHHHHTTCSSCEEEEES
T ss_pred CCCHHHHHHHHHHHHHHCCCCCEEEEEC
T ss_conf 9868899999999998617986899946
No 149
>>1p5z_B DCK, deoxycytidine kinase; nucleoside kinase, P-loop, ARAC, cytarabine, transferase; HET: AR3 ADP; 1.60A {Homo sapiens} (B:)
Probab=67.53 E-value=0.37 Score=28.40 Aligned_cols=43 Identities=19% Similarity=0.217 Sum_probs=34.5
Q ss_pred CEEEE-CCEEECCCCCCHHHHHHHHHHHHCCCCEEEEEECCCCCCCC
Q ss_conf 88998-23000788874899999999852473159876045787777
Q gi|254780401|r 45 PVICV-GGFVMGGTGKTPTALAIAKAVIDKNLKPGFLSRGYGRKSRI 90 (338)
Q Consensus 45 pVI~V-GNitvGGtGKTP~v~~l~~~l~~~g~~~~ilsRGYg~~~~~ 90 (338)
.+|+| |+. |+|||-++..|++.|...++.+..+.|.++.....
T Consensus 25 ~~I~i~G~~---GsGKST~~~~L~~~l~~~~~~~~~~~~~~~~~~~~ 68 (263)
T 1p5z_B 25 KKISIEGNI---AAGKSTFVNILKQLCEDWEVVPEPVARWCNVQSTQ 68 (263)
T ss_dssp EEEEEECST---TSSHHHHHTTTGGGCTTEEEECCCHHHHTSCCCC-
T ss_pred CEEEEECCC---CCCHHHHHHHHHHHHHCCCCEEEEECCCCCCCHHH
T ss_conf 989998988---88699999999999742798576631038864177
No 150
>>2ewv_A Twitching motility protein PILT; pilus retraction motor, ATPase, hexameric PILT, protein transport; HET: ADP; 2.80A {Aquifex aeolicus VF5} PDB: 2eww_A* 2gsz_A* (A:125-372)
Probab=67.47 E-value=8.1 Score=18.88 Aligned_cols=26 Identities=15% Similarity=0.211 Sum_probs=19.2
Q ss_pred CCCCCCHHHHHHHHHHHHC-CCCEEEE
Q ss_conf 7888748999999998524-7315987
Q gi|254780401|r 55 GGTGKTPTALAIAKAVIDK-NLKPGFL 80 (338)
Q Consensus 55 GGtGKTP~v~~l~~~l~~~-g~~~~il 80 (338)
-|||||-+..+|++++-+. +..+.++
T Consensus 21 tGsGKTtll~al~~~~~~~~~~~ii~~ 47 (248)
T 2ewv_A 21 TGSGKSTTIASMIDYINQTKSYHIITI 47 (248)
T ss_dssp SSSSHHHHHHHHHHHHHHHSCCEEEEE
T ss_pred CCCCCCHHHHHHHHHHHCCCCCCEEEC
T ss_conf 877730199999998760345441103
No 151
>>2oyc_A PLP phosphatase, pyridoxal phosphate phosphatase; structural genomics, NYSGXRC, NEW YORK SGX research center for structural genomics, PSI-2; 1.72A {Homo sapiens} PDB: 2p27_A 2p69_A* 2cft_A* 2cfs_A 2cfr_A* (A:91-230)
Probab=67.45 E-value=8.9 Score=18.59 Aligned_cols=62 Identities=19% Similarity=0.224 Sum_probs=36.2
Q ss_pred CCEEEEEECCCCHHHHHHHHHHHCCCCCC-------------CCCCCCCCCCCHHHHHHHHHHHHHCCCEEEECHHHHH
Q ss_conf 86389874155357899988740100001-------------2214332348989999999975647987998546634
Q gi|254780401|r 222 GKKVLAFSGIADTEKFFTTVRQLGALIEQ-------------CYSFGDHAHLSDKKIAYLLDQAQQKGLILVTTAKDAM 287 (338)
Q Consensus 222 ~k~v~afsGIa~P~~F~~~L~~~g~~i~~-------------~~~fpDHh~ys~~dl~~i~~~a~~~~~~iiTTEKD~V 287 (338)
+++++++. .+.+.+.|++.|+.+.. ......+..|+-.++.+......+.++++|+|-.|.+
T Consensus 19 ~~~v~~iG----~~~~~~~l~~~g~~~~~~~~~~~~~~~~~~aVv~g~~~~~~~~~l~~a~~~l~~~~~~~i~tN~D~~ 93 (140)
T 2oyc_A 19 PGAVFVLG----GEGLRAELRAAGLRLAGDPSAGDGAAPRVRAVLVGYDEHFSFAKLREACAHLRDPECLLVATDRDPW 93 (140)
T ss_dssp CCEEEEES----CHHHHHHHHHTTCEETTSCCCC---CCCEEEEEECCCTTCCHHHHHHHHHHHTSTTSEEEESCCCCE
T ss_pred CCEEEEEC----CHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHEEECCCCCCCHHHHHHHHHHHHCCCCCEEECCCCCC
T ss_conf 62588854----7337899998376523663554333210132031465334677777899987425652242036532
No 152
>>1p6x_A Thymidine kinase; P-loop, LID, transferase; HET: THM; 2.00A {Equid herpesvirus 4} (A:)
Probab=67.12 E-value=2.1 Score=22.99 Aligned_cols=33 Identities=24% Similarity=0.203 Sum_probs=27.0
Q ss_pred EECCEEECCCCCCHHHHHHHHHHHHCCCCEEEEEEC
Q ss_conf 982300078887489999999985247315987604
Q gi|254780401|r 48 CVGGFVMGGTGKTPTALAIAKAVIDKNLKPGFLSRG 83 (338)
Q Consensus 48 ~VGNitvGGtGKTP~v~~l~~~l~~~g~~~~ilsRG 83 (338)
.-|+. |+|||-++..|++.|..+|..+.+++--
T Consensus 12 ieG~~---GsGKTTl~~~L~~~l~~~~~~~~~~e~~ 44 (334)
T 1p6x_A 12 LDGVY---GIGKSTTGRVMASAASGGSPTLYFPEPM 44 (334)
T ss_dssp EECST---TSSHHHHHHHHHSGGGCSSCEEEECCCH
T ss_pred EECCC---CCCHHHHHHHHHHHHCCCCCEEEEECCH
T ss_conf 98887---7889999999999866799779982763
No 153
>>1ye8_A Protein THEP1, hypothetical UPF0334 kinase-like protein AQ_1292; mixed alpha-beta protein, rossman fold, signaling protein, transferase; 1.40A {Aquifex aeolicus} (A:)
Probab=66.79 E-value=4.4 Score=20.77 Aligned_cols=94 Identities=13% Similarity=-0.017 Sum_probs=42.5
Q ss_pred ECCCCCCHHHHHHHHHHHHCCCCEEEEEE--CCCCCCCCCEEEECCCCCHHHHCCHH----HHHHHCCC------CCCCC
Q ss_conf 07888748999999998524731598760--45787777558714567887704212----33220576------34652
Q gi|254780401|r 54 MGGTGKTPTALAIAKAVIDKNLKPGFLSR--GYGRKSRISFRVDLEKHSAYDVGDEP----LLLARRAV------TIVTS 121 (338)
Q Consensus 54 vGGtGKTP~v~~l~~~l~~~g~~~~ilsR--GYg~~~~~~~~v~~~~~~~~~vGDEp----~lla~~~p------v~V~~ 121 (338)
--|+|||-+.-.|+..+....=.+-+--. .+.+...+......... ....+... .-+.+... ..-+.
T Consensus 8 pnGaGKSTLlk~i~Gll~p~~G~i~~~g~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~ 86 (178)
T 1ye8_A 8 EPGVGKTTLVKKIVERLGKRAIGFWTEEVRDPETKKRTGFRIITTEGK-KKIFSSKFFTSKKLVGSYGVNVQYFEELAIP 86 (178)
T ss_dssp CTTSSHHHHHHHHHHHHGGGEEEEEEEEEC------CCEEEEEETTCC-EEEEEETTCCCSSEETTEEECHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHCCCCCCEEEECCCCHHHHHHHHCEEEEEECCC-HHHHHHHHHHHHHHHHHHCCCCCHHHHHHHH
T ss_conf 998089999999983088886269989823455645425202443032-3566552023445666641576255642101
Q ss_pred CHHHHHHHHCCCCCCEEEECCCCCCCC
Q ss_conf 012256641024574799718322344
Q gi|254780401|r 122 DRKIGVQMLLQEGVDIIIMDDGFHSAD 148 (338)
Q Consensus 122 ~R~~~~~~~~~~~~diiIlDDGfQh~~ 148 (338)
.++.+...+.-.+++++|||--..+.-
T Consensus 87 k~R~~ia~al~~~P~iLiLDEPt~~lD 113 (178)
T 1ye8_A 87 ILERAYREAKKDRRKVIIIDEIGKXEL 113 (178)
T ss_dssp HHHHHHHHHHHCTTCEEEECCCSTTGG
T ss_pred HHHHHHHHHHHCCCCEEEEECCCCCCC
T ss_conf 278999999724998899834785322
No 154
>>1yks_A Genome polyprotein [contains: flavivirin protease NS3 catalytic subunit]; helicase, flavivirus, DEAD-BOX, ATPase, rtpase, hydrolase; 1.80A {Yellow fever virus} (A:1-145,A:303-387)
Probab=66.77 E-value=5.2 Score=20.29 Aligned_cols=27 Identities=26% Similarity=0.297 Sum_probs=22.4
Q ss_pred CCCCCCHHH-HHHHHHHHHCCCCEEEEE
Q ss_conf 788874899-999999852473159876
Q gi|254780401|r 55 GGTGKTPTA-LAIAKAVIDKNLKPGFLS 81 (338)
Q Consensus 55 GGtGKTP~v-~~l~~~l~~~g~~~~ils 81 (338)
=|+|||=.+ .++++...+++.++.++.
T Consensus 17 TGsGKT~~~l~~i~~~~~~~~~rvLvL~ 44 (230)
T 1yks_A 17 PGAGKTRRFLPQILAECARRRLRTLVLA 44 (230)
T ss_dssp TTSSTTTTHHHHHHHHHHHTTCCEEEEE
T ss_pred CCCCHHHHHHHHHHHHHHHCCCEEEEEH
T ss_conf 9974989999999999860799299984
No 155
>>3cmu_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 4.20A {Escherichia coli} (A:1405-1637)
Probab=66.09 E-value=5 Score=20.38 Aligned_cols=27 Identities=22% Similarity=0.324 Sum_probs=24.4
Q ss_pred CCCCCCHHHHHHHHHHHHCCCCEEEEE
Q ss_conf 788874899999999852473159876
Q gi|254780401|r 55 GGTGKTPTALAIAKAVIDKNLKPGFLS 81 (338)
Q Consensus 55 GGtGKTP~v~~l~~~l~~~g~~~~ils 81 (338)
-|||||-+++.++.....+|.++..++
T Consensus 32 pGsGKT~l~lq~~~~~~~~g~~~~yi~ 58 (233)
T 3cmu_A 32 ESSGKTTLTLQVIAAAQREGKTCAFID 58 (233)
T ss_dssp TTSSHHHHHHHHHHHHHTTTCCEEEEC
T ss_pred CCCCCHHHHHHHHHHHHHCCCEEEEEC
T ss_conf 878832699999999986388479941
No 156
>>2is6_A DNA helicase II; hydrolase/DNA complex; HET: DNA ADP; 2.20A {Escherichia coli} PDB: 2is2_A* 2is1_A* 2is4_A* (A:1-106,A:189-283)
Probab=66.00 E-value=6 Score=19.81 Aligned_cols=35 Identities=11% Similarity=0.119 Sum_probs=23.5
Q ss_pred CCEEEECCEEECCCCCCHHHHHHHHHHHHCC----CCEEEEE
Q ss_conf 9889982300078887489999999985247----3159876
Q gi|254780401|r 44 IPVICVGGFVMGGTGKTPTALAIAKAVIDKN----LKPGFLS 81 (338)
Q Consensus 44 ~pVI~VGNitvGGtGKTP~v~~l~~~l~~~g----~~~~ils 81 (338)
-+++.+| .-|||||-+....+.++...+ .++.+++
T Consensus 23 ~~~lV~g---~aGsGKT~~~~~~i~~ll~~~~~~~~~il~~t 61 (201)
T 2is6_A 23 SNLLVLA---GAGSGKTRVLVHRIAWLMSVENCSPYSIMAVT 61 (201)
T ss_dssp SCEEEEC---CTTSSHHHHHHHHHHHHHHTSCCCGGGEEEEE
T ss_pred CCEEEEE---ECCHHHHHHHHHHHHHHHHHCCCCCCCEEEEE
T ss_conf 9989998---28659999999999999981999934099981
No 157
>>2j37_W Signal recognition particle 54 kDa protein (SRP54); ribosome, SRP, translation/RNA; 8.00A {Canis SP} PDB: 1wgw_A (W:96-285)
Probab=65.90 E-value=6.1 Score=19.76 Aligned_cols=30 Identities=27% Similarity=0.286 Sum_probs=25.8
Q ss_pred EECCCCCCHHHHHHHHHHHHCCCCEEEEEE
Q ss_conf 007888748999999998524731598760
Q gi|254780401|r 53 VMGGTGKTPTALAIAKAVIDKNLKPGFLSR 82 (338)
Q Consensus 53 tvGGtGKTP~v~~l~~~l~~~g~~~~ilsR 82 (338)
=.=|+|||-+...|+..++..+.++.+...
T Consensus 13 GpnG~GKSTll~~l~gll~~~~g~v~~~g~ 42 (190)
T 2j37_W 13 GLQGSGKTTTCSKLAYYYQRKGWKTCLICA 42 (190)
T ss_dssp CSTTSSHHHHHHHHHHHHHHTTCCEEEEEE
T ss_pred CCCCCCCCCHHHHHHHHHHHCCCCCCEEEC
T ss_conf 575567532599999999741354311201
No 158
>>1kjn_A MTH0777; hypotethical protein, structural genomics, PSI, protein structure initiative; 2.20A {Methanothermobacterthermautotrophicus} (A:)
Probab=65.85 E-value=5.6 Score=20.03 Aligned_cols=23 Identities=13% Similarity=0.239 Sum_probs=21.3
Q ss_pred CCHHHHHHHHHHHHCCCCEEEEE
Q ss_conf 74899999999852473159876
Q gi|254780401|r 59 KTPTALAIAKAVIDKNLKPGFLS 81 (338)
Q Consensus 59 KTP~v~~l~~~l~~~g~~~~ils 81 (338)
.||.++||+..|+++|+.|.|.+
T Consensus 21 q~p~~lyl~~~Lk~~G~~v~Va~ 43 (157)
T 1kjn_A 21 QIPLAIYTSHKLKKKGFRVTVTA 43 (157)
T ss_dssp HHHHHHHHHHHHHHTTCEEEEEE
T ss_pred HHHHHHHHHHHHHHCCCCEEEEC
T ss_conf 34799999999986697359965
No 159
>>1u0j_A DNA replication protein; AAA+ protein, P-loop atpases, helicase; HET: DNA ADP; 2.10A {Adeno-associated virus - 2} (A:64-267)
Probab=65.85 E-value=4.5 Score=20.68 Aligned_cols=67 Identities=18% Similarity=-0.119 Sum_probs=41.1
Q ss_pred HHHHHHHHHHHCCCCCCCCCEEEECCEEECCCCCCHHHHHHHHHHHHCCCCEEEEEECCCCCCCCCEEEE
Q ss_conf 9999999974046433889889982300078887489999999985247315987604578777755871
Q gi|254780401|r 26 YSFISSKLMKRGQRLHAPIPVICVGGFVMGGTGKTPTALAIAKAVIDKNLKPGFLSRGYGRKSRISFRVD 95 (338)
Q Consensus 26 y~~~~~~~~~~~~~~~~~~pVI~VGNitvGGtGKTP~v~~l~~~l~~~g~~~~ilsRGYg~~~~~~~~v~ 95 (338)
..++..+.+-+..+.....-++..|. ||||||-++..|++.+-..+...---++.+-....+...+.
T Consensus 24 ~~~~~~l~~~l~~~~~~~~~~~l~G~---~gtGKStl~~~l~~l~g~~~~~~~~~~~~~~~~l~gk~i~i 90 (204)
T 1u0j_A 24 QYAASVFLGWATKKFGKRNTIWLFGP---ATTGKTNIAEAIAHTVPFYGCVNWTNENFPFNDCVDKMVIW 90 (204)
T ss_dssp HHHHHHHHHHHTTCSTTCCEEEEECS---TTSSHHHHHHHHHHHSSCEEECCTTCSSCTTGGGSSCSEEE
T ss_pred HHHHHHHHHHHCCCCCCCEEEEEECC---CCCCHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCEEEE
T ss_conf 99999999997389977459999889---98878999999999807442013557887663236987999
No 160
>>3dhn_A NAD-dependent epimerase/dehydratase; reductase, PF01370, Q89Z24_bactn, NESG, BTR310, structural genomics, PSI-2; 2.00A {Bacteroides thetaiotaomicron} (A:)
Probab=65.81 E-value=5.9 Score=19.88 Aligned_cols=35 Identities=11% Similarity=0.255 Sum_probs=27.9
Q ss_pred EEECCCCCCHHHHHHHHHHHHCCCCEEEEEECCCCCC
Q ss_conf 0007888748999999998524731598760457877
Q gi|254780401|r 52 FVMGGTGKTPTALAIAKAVIDKNLKPGFLSRGYGRKS 88 (338)
Q Consensus 52 itvGGtGKTP~v~~l~~~l~~~g~~~~ilsRGYg~~~ 88 (338)
+.+||||- +=.+|++.|.++|++|..++|.-....
T Consensus 8 lItGatG~--iG~~l~~~L~~~g~~V~~~~R~~~~~~ 42 (227)
T 3dhn_A 8 VLIGASGF--VGSALLNEALNRGFEVTAVVRHPEKIK 42 (227)
T ss_dssp EEETCCHH--HHHHHHHHHHTTTCEEEEECSCGGGCC
T ss_pred EEECCCCH--HHHHHHHHHHHCCCEEEEEECCHHHCC
T ss_conf 99889988--999999999978498999988836533
No 161
>>1f0k_A MURG, UDP-N-acetylglucosamine-N-acetylmuramyl- (pentapeptide) pyrophosphoryl-undecaprenol...; rossmann fold, transferase; 1.90A {Escherichia coli} (A:1-171,A:340-364)
Probab=65.32 E-value=9.8 Score=18.31 Aligned_cols=33 Identities=18% Similarity=0.284 Sum_probs=26.3
Q ss_pred CCCCCCHHHHHHHHHHHHCCCCEEEEEECCCCC
Q ss_conf 788874899999999852473159876045787
Q gi|254780401|r 55 GGTGKTPTALAIAKAVIDKNLKPGFLSRGYGRK 87 (338)
Q Consensus 55 GGtGKTP~v~~l~~~l~~~g~~~~ilsRGYg~~ 87 (338)
+..|-+-.+..|++.|.++|+.|.+++..++..
T Consensus 15 ~~gG~~~~~~~la~~L~~~G~eV~v~~~~~~~~ 47 (196)
T 1f0k_A 15 GTGGHVFPGLAVAHHLMAQGWQVRWLGTADRME 47 (196)
T ss_dssp SSHHHHHHHHHHHHHHHTTTCEEEEEECTTSTH
T ss_pred CCHHHHHHHHHHHHHHHHCCCEEEEEECCCHHH
T ss_conf 846879999999999997889799997887065
No 162
>>1rz3_A Hypothetical protein rbstp0775; MCSG, structural genomics, PSI, protein structure initiative; 1.90A {Geobacillus stearothermophilus} (A:)
Probab=65.02 E-value=6.1 Score=19.74 Aligned_cols=40 Identities=15% Similarity=0.123 Sum_probs=30.0
Q ss_pred CCEEE-ECCEEECCCCCCHHHHHHHHHHHHCCCCEEEEEECCCC
Q ss_conf 98899-82300078887489999999985247315987604578
Q gi|254780401|r 44 IPVIC-VGGFVMGGTGKTPTALAIAKAVIDKNLKPGFLSRGYGR 86 (338)
Q Consensus 44 ~pVI~-VGNitvGGtGKTP~v~~l~~~l~~~g~~~~ilsRGYg~ 86 (338)
-+||+ -|+ -|+|||-++-.|++.|...+.....+..=+..
T Consensus 22 ~~iI~I~G~---~GsGKtTla~~L~~~l~~~~~~~~~~~~~~~~ 62 (201)
T 1rz3_A 22 RLVLGIDGL---SRSGKTTLANQLSQTLREQGISVCVFHXDDHI 62 (201)
T ss_dssp SEEEEEEEC---TTSSHHHHHHHHHHHHHHTTCCEEEEEGGGGC
T ss_pred CEEEEEECC---CCCCHHHHHHHHHHHHCCCCCCEEEECCCCCC
T ss_conf 889997798---73799999999999836158851230231112
No 163
>>1jbk_A CLPB protein; beta barrel, chaperone; 1.80A {Escherichia coli} (A:)
Probab=65.02 E-value=3 Score=21.91 Aligned_cols=30 Identities=23% Similarity=0.390 Sum_probs=23.0
Q ss_pred CCCCEEEECCEEECCCCCCHHHHHHHHHHHHCC
Q ss_conf 889889982300078887489999999985247
Q gi|254780401|r 42 APIPVICVGGFVMGGTGKTPTALAIAKAVIDKN 74 (338)
Q Consensus 42 ~~~pVI~VGNitvGGtGKTP~v~~l~~~l~~~g 74 (338)
.+-.++-+|- .|||||-++.+||+.|....
T Consensus 42 ~~~~~Ll~Gp---pGtGKT~~A~~lA~~l~~~~ 71 (195)
T 1jbk_A 42 TKNNPVLIGE---PGVGKTAIVEGLAQRIINGE 71 (195)
T ss_dssp SSCEEEEECC---TTSCHHHHHHHHHHHHHHTC
T ss_pred CCCCCEEEEC---CCCCCHHHHHHHHHHHHHCC
T ss_conf 8899468607---98782899999999998079
No 164
>>2pez_A Bifunctional 3'-phosphoadenosine 5'- phosphosulfate synthetase 1 (PAPS synthetase...; NMP-kinase fold, protein in complex with nucleic acid; HET: GGZ DAT; 1.40A {Homo sapiens} PDB: 2pey_A* 2ax4_A* (A:)
Probab=64.20 E-value=5.9 Score=19.89 Aligned_cols=33 Identities=21% Similarity=0.280 Sum_probs=28.1
Q ss_pred CCCCCCHHHHHHHHHHHHCCCCEEEEEECCCCC
Q ss_conf 788874899999999852473159876045787
Q gi|254780401|r 55 GGTGKTPTALAIAKAVIDKNLKPGFLSRGYGRK 87 (338)
Q Consensus 55 GGtGKTP~v~~l~~~l~~~g~~~~ilsRGYg~~ 87 (338)
=|+|||-++..|++.|....+....+.+...+.
T Consensus 14 ~GsGKTTla~~La~~l~~~~~~~~~~~~~~~~~ 46 (179)
T 2pez_A 14 SGAGKTTVSMALEEYLVCHGIPCYTLDGDNIRQ 46 (179)
T ss_dssp TTSSHHHHHHHHHHHHHHTTCCEEEEEHHHHTT
T ss_pred CCCCHHHHHHHHHHHHHHCCCCCEEHHHHHHHC
T ss_conf 999999999999999723698742202677630
No 165
>>1gg4_A UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6- diaminopimelate-D-alanyl-D-alanyl ligase...; alpha/beta sheet; 2.30A {Escherichia coli} (A:82-312)
Probab=64.10 E-value=4.1 Score=21.00 Aligned_cols=37 Identities=19% Similarity=0.185 Sum_probs=31.2
Q ss_pred CCCCCEEEECCEEECCCCCCHHHHHHHHHHHHCCCCEEEEE
Q ss_conf 38898899823000788874899999999852473159876
Q gi|254780401|r 41 HAPIPVICVGGFVMGGTGKTPTALAIAKAVIDKNLKPGFLS 81 (338)
Q Consensus 41 ~~~~pVI~VGNitvGGtGKTP~v~~l~~~l~~~g~~~~ils 81 (338)
..+.|||.| +|--|||-++-+|+..|+..|++++..+
T Consensus 16 ~~~~~vI~V----tGT~GKTtt~~~l~~iL~~~g~~~~~~~ 52 (231)
T 1gg4_A 16 QVPARVVAL----TGSSGKTSVKEXTAAILSQCGNTLYTAG 52 (231)
T ss_dssp HSCCEEEEE----ECSSCHHHHHHHHHHHHTTTSCEEECCT
T ss_pred CCCCCEEEE----EECCCCHHHHHHHHHHHHHHCCCCCCCC
T ss_conf 898608999----8069963689999976776402440677
No 166
>>3hws_A ATP-dependent CLP protease ATP-binding subunit CLPX; CLPXP, AAA+ molecular machine, hexamer, asymmetric,, chaperone, metal-binding; HET: ADP; 3.25A {Escherichia coli k-12} PDB: 3hte_A (A:1-255)
Probab=63.96 E-value=2.9 Score=22.10 Aligned_cols=36 Identities=19% Similarity=0.159 Sum_probs=25.9
Q ss_pred CCCCCCEEEECCEEECCCCCCHHHHHHHHHHHHCCCCEEEEE
Q ss_conf 338898899823000788874899999999852473159876
Q gi|254780401|r 40 LHAPIPVICVGGFVMGGTGKTPTALAIAKAVIDKNLKPGFLS 81 (338)
Q Consensus 40 ~~~~~pVI~VGNitvGGtGKTP~v~~l~~~l~~~g~~~~ils 81 (338)
..+|--|+-+|.= |||||-++.+||+.+.. ....++
T Consensus 48 ~~~~~~iLl~GPp---GtGKT~la~alA~~l~~---~~~~i~ 83 (255)
T 3hws_A 48 ELGKSNILLIGPT---GSGKTLLAETLARLLDV---PFTMAD 83 (255)
T ss_dssp CCCCCCEEEECCT---TSSHHHHHHHHHHHTTC---CEEEEE
T ss_pred CCCCCCEEEECCC---CCCHHHHHHHHHHHHHH---HHHHHH
T ss_conf 5676537998999---88899999999999775---766664
No 167
>>2v1u_A Cell division control protein 6 homolog; DNA replication, nucleotide-binding, replication, archaea; HET: ADP; 3.10A {Aeropyrum pernix} (A:1-200)
Probab=63.50 E-value=3.8 Score=21.19 Aligned_cols=30 Identities=23% Similarity=0.253 Sum_probs=23.0
Q ss_pred CCEEEECCEEECCCCCCHHHHHHHHHHHHCCCC
Q ss_conf 988998230007888748999999998524731
Q gi|254780401|r 44 IPVICVGGFVMGGTGKTPTALAIAKAVIDKNLK 76 (338)
Q Consensus 44 ~pVI~VGNitvGGtGKTP~v~~l~~~l~~~g~~ 76 (338)
-.|+.+|- .|||||-++.++++.+......
T Consensus 45 ~~ili~Gp---~G~GKTtla~~la~~l~~~~~~ 74 (200)
T 2v1u_A 45 SNALLYGL---TGTGKTAVARLVLRRLEARASS 74 (200)
T ss_dssp CCEEECBC---TTSSHHHHHHHHHHHHHHHHHH
T ss_pred CEEEEECC---CCCCHHHHHHHHHHHHHHHHCC
T ss_conf 84999899---9782999999999986303023
No 168
>>2p67_A LAO/AO transport system kinase; ARGK, structural genomics, PSI-2, protein structure initiative; 1.80A {Escherichia coli K12} (A:1-265)
Probab=63.46 E-value=11 Score=18.08 Aligned_cols=42 Identities=19% Similarity=0.210 Sum_probs=32.8
Q ss_pred CCCEE-EECCEEECCCCCCHHHHHHHHHHHHCCCCEEEEEECCCCC
Q ss_conf 89889-9823000788874899999999852473159876045787
Q gi|254780401|r 43 PIPVI-CVGGFVMGGTGKTPTALAIAKAVIDKNLKPGFLSRGYGRK 87 (338)
Q Consensus 43 ~~pVI-~VGNitvGGtGKTP~v~~l~~~l~~~g~~~~ilsRGYg~~ 87 (338)
..++| .||. -|+|||-++-.|+..+...|.++++++.--++.
T Consensus 55 ~~~~v~ivG~---~~aGKSTLln~L~~~~~~~g~~~~~~~~~~~~t 97 (265)
T 2p67_A 55 NTLRLGVTGT---PGAGKSTFLEAFGMLLIREGLKVAVIAVDPSSP 97 (265)
T ss_dssp CSEEEEEEEC---TTSCHHHHHHHHHHHHHHTTCCEEEEEECCC--
T ss_pred CCEEEEEECC---CCCCHHHHHHHHHHHHHHCCCCEEEEECCCCCC
T ss_conf 8418974489---999899999999999863688247741588754
No 169
>>2v54_A DTMP kinase, thymidylate kinase; nucleotide biosynthesis, ATP-binding, nucleotide-binding, poxvirus, transferase; HET: TYD POP; 2.4A {Vaccinia virus copenhagen} PDB: 2w0s_A* (A:)
Probab=63.28 E-value=4 Score=21.03 Aligned_cols=35 Identities=17% Similarity=0.215 Sum_probs=26.1
Q ss_pred EEEECCEEECCCCCCHHHHHHHHHHHHCCCCEEEEEEC
Q ss_conf 89982300078887489999999985247315987604
Q gi|254780401|r 46 VICVGGFVMGGTGKTPTALAIAKAVIDKNLKPGFLSRG 83 (338)
Q Consensus 46 VI~VGNitvGGtGKTP~v~~l~~~l~~~g~~~~ilsRG 83 (338)
|+..|.. |+|||-++..|++.|...+.......+.
T Consensus 7 I~i~G~~---GsGKsTl~~~La~~l~~~~~~~~~~~~~ 41 (204)
T 2v54_A 7 IVFEGLD---KSGKTTQCMNIMESIPANTIKYLNFPQR 41 (204)
T ss_dssp EEEECCT---TSSHHHHHHHHHHTSCGGGEEEEESSCT
T ss_pred EEEECCC---CCCHHHHHHHHHHHHHHCCCEEEEECCC
T ss_conf 9998998---8879999999999983789889997999
No 170
>>1oc2_A DTDP-glucose 4,6-dehydratase; lyase, NADH, rhamnose; HET: TDX NAD; 1.5A {Streptococcus suis} (A:1-329)
Probab=63.00 E-value=11 Score=18.02 Aligned_cols=32 Identities=16% Similarity=0.091 Sum_probs=26.1
Q ss_pred EEECCCCCCHHHHHHHHHHHHCCCCEEEEEECCC
Q ss_conf 0007888748999999998524731598760457
Q gi|254780401|r 52 FVMGGTGKTPTALAIAKAVIDKNLKPGFLSRGYG 85 (338)
Q Consensus 52 itvGGtGKTP~v~~l~~~l~~~g~~~~ilsRGYg 85 (338)
+.+|||| =+=.+|++.|.++|+.+.++.|.=.
T Consensus 8 lVTGatG--fiG~~lv~~Ll~~g~~v~~~~r~~~ 39 (329)
T 1oc2_A 8 IVTGGAG--FIGSNFVHYVYNNHPDVHVTVLDKL 39 (329)
T ss_dssp EEETTTS--HHHHHHHHHHHHHCTTCEEEEEECC
T ss_pred EEECCCC--HHHHHHHHHHHHCCCCEEEEEEECC
T ss_conf 8968885--8999999999977997399998488
No 171
>>1nlf_A Regulatory protein REPA; replicative DNA helicase structural changes, replication; 1.95A {Escherichia coli} (A:23-279)
Probab=62.94 E-value=8.9 Score=18.62 Aligned_cols=26 Identities=27% Similarity=0.247 Sum_probs=20.3
Q ss_pred CCCCCCHHHHHHHHHHHHCCCCEEEE
Q ss_conf 78887489999999985247315987
Q gi|254780401|r 55 GGTGKTPTALAIAKAVIDKNLKPGFL 80 (338)
Q Consensus 55 GGtGKTP~v~~l~~~l~~~g~~~~il 80 (338)
+|+|||-+++.++-.+...+...+..
T Consensus 17 ~G~GKT~l~l~la~~~a~~~~~~g~~ 42 (257)
T 1nlf_A 17 GGAGKSMLALQLAAQIAGGPDLLEVG 42 (257)
T ss_dssp TTSSHHHHHHHHHHHHHTCCCTTCCC
T ss_pred CCCCHHHHHHHHHHHHHCCCCCCCCC
T ss_conf 99989999999999996599634533
No 172
>>1vl0_A DTDP-4-dehydrorhamnose reductase, RFBD ortholog; 15025322, structural genomics, JCSG, protein structure initiative, PSI; HET: NAI UNL; 2.05A {Clostridium acetobutylicum atcc 824} (A:)
Probab=62.85 E-value=11 Score=18.00 Aligned_cols=63 Identities=8% Similarity=-0.063 Sum_probs=38.1
Q ss_pred CCCEEEEEECCCCHHHHHHHHHHHCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCEEEECHHH
Q ss_conf 68638987415535789998874010000122143323489899999999756479879985466
Q gi|254780401|r 221 SGKKVLAFSGIADTEKFFTTVRQLGALIEQCYSFGDHAHLSDKKIAYLLDQAQQKGLILVTTAKD 285 (338)
Q Consensus 221 ~~k~v~afsGIa~P~~F~~~L~~~g~~i~~~~~fpDHh~ys~~dl~~i~~~a~~~~~~iiTTEKD 285 (338)
.+....-+.-+.|=-.....+-+... .+.....+...++..|+.+.+.++......++....+
T Consensus 187 ~~~~~~~~i~v~Dva~ai~~~~~~~~--~~~~~i~~~~~~s~~e~~~~i~~~~g~~~~~~~~~~~ 249 (292)
T 1vl0_A 187 VHDQVGTPTSTVDLARVVLKVIDEKN--YGTFHCTCKGICSWYDFAVEIFRLTGIDVKVTPCTTE 249 (292)
T ss_dssp ESSCEECCEEHHHHHHHHHHHHHHTC--CEEEECCCBSCEEHHHHHHHHHHHHCCCCEEEEECST
T ss_pred ECCCCCCCCCCCHHHHHHHHHHHHCC--CCCEEECCCCCCCHHHHHHHHHHHHCCCCEEEECCHH
T ss_conf 23654553122122111112222025--6862563688762778999999996998638863377
No 173
>>2j28_9 Signal recognition particle 54; ribosome, protein/RNA complex; 8.0A {Escherichia coli} (9:92-330)
Probab=62.77 E-value=3.2 Score=21.77 Aligned_cols=100 Identities=17% Similarity=0.143 Sum_probs=48.3
Q ss_pred EEEECCEEECCCCCCHHHHHHHHHH-HHCCCCEEEEEEC-CCCCCCCCEEEECCCCCHHHHCCHHHHHHHCCCCC---CC
Q ss_conf 8998230007888748999999998-5247315987604-57877775587145678877042123322057634---65
Q gi|254780401|r 46 VICVGGFVMGGTGKTPTALAIAKAV-IDKNLKPGFLSRG-YGRKSRISFRVDLEKHSAYDVGDEPLLLARRAVTI---VT 120 (338)
Q Consensus 46 VI~VGNitvGGtGKTP~v~~l~~~l-~~~g~~~~ilsRG-Yg~~~~~~~~v~~~~~~~~~vGDEp~lla~~~pv~---V~ 120 (338)
|+.+|. -|+|||-.+-.++-.+ ..+|.+++|++.- ++-. ..+-+..+++|.- .++. -.
T Consensus 11 v~i~G~---tGsGKST~ipk~~~~~~~~~~~~~~i~~~~prr~~---------a~~~~~~~a~~~~-----~~~~~~~~~ 73 (239)
T 2j28_9 11 VLMAGL---QGAGKTTSVGKLGKFLREKHKKKVLVVSADVYRPA---------AIKQLETLAEQVG-----VDFFPSDVG 73 (239)
T ss_dssp EEEECS---SSSSSTTTHHHHHHHHHTSSSCCCCBCCCCCSSSC---------SHHHHHHHHHHTT-----CCCCCCSSC
T ss_pred EEEEEE---CCCCCCHHHHHHHHHHHHHCCCEEEEEECCCCCCC---------HHHHHHHHHHHCC-----CCHHHCCCH
T ss_conf 999963---28875136999999999847985899964545532---------4367888664135-----432110203
Q ss_pred CCHHH----HHHHHCCCCCCEEEECCCCC--------------CCCCCCEEEEEEECCCC
Q ss_conf 20122----56641024574799718322--------------34412306999961843
Q gi|254780401|r 121 SDRKI----GVQMLLQEGVDIIIMDDGFH--------------SADLQADFSLIVVNSHR 162 (338)
Q Consensus 121 ~~R~~----~~~~~~~~~~diiIlDDGfQ--------------h~~l~rdl~Ivl~d~~~ 162 (338)
..... ......-.++|+||+|-.-- .....+|..+++.++..
T Consensus 74 ~~~~~~~~~~~~~~~l~~~~~viiDe~her~~~~dlll~l~~~~~~~~~~~~liv~sat~ 133 (239)
T 2j28_9 74 QKPVDIVNAALKEAKLKFYDVLLVDTAGRLHVDEAMMDEIKQVHASINPVETLFVVDAMT 133 (239)
T ss_dssp CCTTHHHHHHHHHHHHTTCSCEEEEECCCCSSHHHHHHHHHHHHHHHCCSEEEEEEETTT
T ss_pred HHHHHHHHHHHHHHHHCCCCEEEECCCCCHHHHHHHHHHHHHHHHCCCCCEEEEEECCCC
T ss_conf 478999999888998658858997588620447889999999974069816999720346
No 174
>>1qvr_A CLPB protein; coiled coil, AAA ATPase, chaperone; HET: ANP; 3.00A {Thermus thermophilus} (A:146-331)
Probab=62.55 E-value=4.4 Score=20.76 Aligned_cols=29 Identities=21% Similarity=0.357 Sum_probs=22.7
Q ss_pred CCCEEEECCEEECCCCCCHHHHHHHHHHHHCC
Q ss_conf 89889982300078887489999999985247
Q gi|254780401|r 43 PIPVICVGGFVMGGTGKTPTALAIAKAVIDKN 74 (338)
Q Consensus 43 ~~pVI~VGNitvGGtGKTP~v~~l~~~l~~~g 74 (338)
+--++-+|.= |||||-++.+||+.|....
T Consensus 46 ~~~~Ll~GpP---GtGKT~laralA~~l~~~~ 74 (186)
T 1qvr_A 46 KNNPVLIGEP---GVGKTAIVEGLAQRIVKGD 74 (186)
T ss_dssp CCCCEEEECT---TSCHHHHHHHHHHHHHHTC
T ss_pred CCCCEEECCC---CCCHHHHHHHHHHHHHHCC
T ss_conf 8880797788---7415099999999998569
No 175
>>3ec2_A DNA replication protein DNAC; helicase loader, replication initiation factor, ATP-binding, nucleotide-binding; HET: DNA ADP; 2.70A {Aquifex aeolicus} PDB: 3ecc_A* (A:)
Probab=62.55 E-value=3.7 Score=21.28 Aligned_cols=37 Identities=32% Similarity=0.401 Sum_probs=27.1
Q ss_pred CCCCCEEEECCEEECCCCCCHHHHHHHHHHHHCCCCEEEE
Q ss_conf 3889889982300078887489999999985247315987
Q gi|254780401|r 41 HAPIPVICVGGFVMGGTGKTPTALAIAKAVIDKNLKPGFL 80 (338)
Q Consensus 41 ~~~~pVI~VGNitvGGtGKTP~v~~l~~~l~~~g~~~~il 80 (338)
..+-.++..|.- |||||-++..+|+.+......+...
T Consensus 36 ~~~~~ilL~Gpp---GtGKT~la~aia~~~~~~~~~~~~~ 72 (180)
T 3ec2_A 36 EEGKGLTFVGSP---GVGKTHLAVATLKAIYEKKGIRGYF 72 (180)
T ss_dssp GGCCEEEECCSS---SSSHHHHHHHHHHHHHHHSCCCCCE
T ss_pred CCCCEEEEECCC---CCCHHHHHHHHHHHHHHHCCCEEEE
T ss_conf 349879999989---9989999999999877605955999
No 176
>>1w5s_A ORC2; CDC6, DNA replication initiation, DNA binding protein, AAA+ ATPase; HET: ADP; 2.4A {Aeropyrum pernix} (A:1-214)
Probab=62.49 E-value=4.1 Score=21.01 Aligned_cols=25 Identities=32% Similarity=0.272 Sum_probs=19.1
Q ss_pred EEEECCEEECCCCCCHHHHHHHHHHHHC
Q ss_conf 8998230007888748999999998524
Q gi|254780401|r 46 VICVGGFVMGGTGKTPTALAIAKAVIDK 73 (338)
Q Consensus 46 VI~VGNitvGGtGKTP~v~~l~~~l~~~ 73 (338)
++.+| -.|||||-++.++|+.|...
T Consensus 55 ill~G---ppGtGKT~lak~ia~~l~~~ 79 (214)
T 1w5s_A 55 YGSIG---RVGIGKTTLAKFTVKRVSEA 79 (214)
T ss_dssp EECTT---CCSSSHHHHHHHHHHHHHHH
T ss_pred EEEEC---CCCCCHHHHHHHHHHHHHHH
T ss_conf 86468---99868999999999998763
No 177
>>1r6b_X CLPA protein; AAA+, N-terminal domain, CLPS, crystal, binding mechanism, hydrolase; HET: ADP; 2.25A {Escherichia coli} (X:157-348)
Probab=62.37 E-value=4.1 Score=20.97 Aligned_cols=29 Identities=28% Similarity=0.369 Sum_probs=21.7
Q ss_pred CCEEEECCEEECCCCCCHHHHHHHHHHHHCCC
Q ss_conf 98899823000788874899999999852473
Q gi|254780401|r 44 IPVICVGGFVMGGTGKTPTALAIAKAVIDKNL 75 (338)
Q Consensus 44 ~pVI~VGNitvGGtGKTP~v~~l~~~l~~~g~ 75 (338)
-.++-+|-= |||||-++..||+.+....+
T Consensus 52 ~~iLL~GPP---GtGKT~la~~lA~~l~~~~~ 80 (192)
T 1r6b_X 52 NNPLLVGES---GVGKTAIAEGLAWRIVQGDV 80 (192)
T ss_dssp CEEEEECCT---TSSHHHHHHHHHHHHHHTCS
T ss_pred CCEEEECCC---CCCHHHHHHHHHHHHHHCCC
T ss_conf 872786577---54489999999999975359
No 178
>>2orw_A Thymidine kinase; TMTK, TP4A, transferase; HET: 4TA; 1.50A {Thermotoga maritima} PDB: 2qpo_A 2qq0_A* 2qqe_A* (A:1-142)
Probab=62.37 E-value=11 Score=17.94 Aligned_cols=27 Identities=19% Similarity=0.079 Sum_probs=24.5
Q ss_pred CCCCCCHHHHHHHHHHHHCCCCEEEEE
Q ss_conf 788874899999999852473159876
Q gi|254780401|r 55 GGTGKTPTALAIAKAVIDKNLKPGFLS 81 (338)
Q Consensus 55 GGtGKTP~v~~l~~~l~~~g~~~~ils 81 (338)
-++|||-..+-.++.+...|.++.++.
T Consensus 12 M~sGKTt~Ll~~~~~~~~~g~kv~~~k 38 (142)
T 2orw_A 12 MYSGKTTELLSFVEIYKLGKKKVAVFK 38 (142)
T ss_dssp TTSSHHHHHHHHHHHHHHTTCEEEEEE
T ss_pred CCCHHHHHHHHHHHHHHHCCCEEEEEE
T ss_conf 177889999999999998799199998
No 179
>>2chg_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATPase, ATP-binding, nucleotide-binding; HET: ANP; 2.1A {Archaeoglobus fulgidus} (A:1-160)
Probab=62.35 E-value=4.2 Score=20.90 Aligned_cols=31 Identities=35% Similarity=0.550 Sum_probs=23.8
Q ss_pred CCEEEECCEEECCCCCCHHHHHHHHHHHHCCCCE
Q ss_conf 9889982300078887489999999985247315
Q gi|254780401|r 44 IPVICVGGFVMGGTGKTPTALAIAKAVIDKNLKP 77 (338)
Q Consensus 44 ~pVI~VGNitvGGtGKTP~v~~l~~~l~~~g~~~ 77 (338)
-+++..|. -|||||.++..+|+.+......+
T Consensus 39 ~~~Ll~Gp---pGtGKT~~a~~la~~l~~~~~~~ 69 (160)
T 2chg_A 39 PHLLFSGP---PGTGKTATAIALARDLFGENWRD 69 (160)
T ss_dssp CCEEEECS---TTSSHHHHHHHHHHHHHGGGGGG
T ss_pred CEEEEECC---CCCCHHHHHHHHHHHHHCCCCCC
T ss_conf 85998889---99867789998888875256666
No 180
>>2w00_A HSDR, R.ECOR124I; ATP-binding, DNA-binding, restriction system, plasmid, helicase, hydrolase, nucleotide-binding; HET: ATP; 2.6A {Escherichia coli} (A:274-472)
Probab=62.09 E-value=11 Score=17.91 Aligned_cols=28 Identities=29% Similarity=0.323 Sum_probs=22.0
Q ss_pred ECCCCCCHHHHHHHHHHHHCC--CCEEEEE
Q ss_conf 078887489999999985247--3159876
Q gi|254780401|r 54 MGGTGKTPTALAIAKAVIDKN--LKPGFLS 81 (338)
Q Consensus 54 vGGtGKTP~v~~l~~~l~~~g--~~~~ils 81 (338)
.=|||||=+.++++..+.+.+ .++.+++
T Consensus 35 ~tGsGKT~~~~~~i~~~~~~~~~~~vlvi~ 64 (199)
T 2w00_A 35 TTGSGKTLTSFKAARLATELDFIDKVFFVV 64 (199)
T ss_dssp CTTSSHHHHHHHHHHHHTTCTTCCEEEEEE
T ss_pred CCCCCCHHHHHHHHHHHHHCCCCCCEEEEE
T ss_conf 489846599999999998374688289995
No 181
>>2pbr_A DTMP kinase, thymidylate kinase; transferase, nucleotide biosynthesis, TMP-binding, ATP-binding, structural genomics, NPPSFA; 1.96A {Aquifex aeolicus VF5} (A:)
Probab=62.03 E-value=9 Score=18.55 Aligned_cols=30 Identities=20% Similarity=0.182 Sum_probs=23.8
Q ss_pred CCCCCCHHHHHHHHHHHHCCCCEEEEEECC
Q ss_conf 788874899999999852473159876045
Q gi|254780401|r 55 GGTGKTPTALAIAKAVIDKNLKPGFLSRGY 84 (338)
Q Consensus 55 GGtGKTP~v~~l~~~l~~~g~~~~ilsRGY 84 (338)
-|+|||-++..|++.|...+..........
T Consensus 9 ~GsGKSTla~~L~~~l~~~~~~~~~~~~~~ 38 (195)
T 2pbr_A 9 DGSGKTTQAKKLYEYLKQKGYFVSLYREPG 38 (195)
T ss_dssp TTSCHHHHHHHHHHHHHHTTCCEEEEESSC
T ss_pred CCCCHHHHHHHHHHHHHHCCCCEEEEECCC
T ss_conf 889999999999999987799689986899
No 182
>>1of1_A Thymidine kinase; transferase, antiviral drug, enzyme- prodrug gene, DNA synthesis, ATP-binding; HET: SCT; 1.95A {Herpes simplex virus} (A:)
Probab=61.95 E-value=3.8 Score=21.26 Aligned_cols=36 Identities=17% Similarity=0.086 Sum_probs=27.5
Q ss_pred CCCEEE-ECCEEECCCCCCHHHHHHHHHHHHCCCCEEEEE
Q ss_conf 898899-823000788874899999999852473159876
Q gi|254780401|r 43 PIPVIC-VGGFVMGGTGKTPTALAIAKAVIDKNLKPGFLS 81 (338)
Q Consensus 43 ~~pVI~-VGNitvGGtGKTP~v~~l~~~l~~~g~~~~ils 81 (338)
...+|+ -||+ |+|||-++..|++.|..+|+.+....
T Consensus 48 ~~~~I~iEG~~---GsGKTTl~~~La~~L~~~~~~~~~e~ 84 (376)
T 1of1_A 48 TLLRVYIDGPH---GMGKTTTTQLLVALGSRDDIVYVPEP 84 (376)
T ss_dssp EEEEEEECSST---TSSHHHHHHHHHC----CCEEEECCC
T ss_pred CEEEEEEECCC---CCCHHHHHHHHHHHHCCCCEEEECCC
T ss_conf 50599998986---57899999999987264874872475
No 183
>>2plr_A DTMP kinase, probable thymidylate kinase; TMP-binding, ATP-binding, structural genomics, NPPSFA; HET: 1PE PGE EPE PG4; 1.60A {Sulfolobus tokodaii str} (A:)
Probab=61.85 E-value=5.9 Score=19.87 Aligned_cols=30 Identities=17% Similarity=-0.038 Sum_probs=24.0
Q ss_pred CCCCCCHHHHHHHHHHHHCCCCEEEEEECC
Q ss_conf 788874899999999852473159876045
Q gi|254780401|r 55 GGTGKTPTALAIAKAVIDKNLKPGFLSRGY 84 (338)
Q Consensus 55 GGtGKTP~v~~l~~~l~~~g~~~~ilsRGY 84 (338)
-|+|||-++..|++.|...|..+-.....+
T Consensus 13 ~GsGKtTla~~L~~~l~~~~~~~~~~~~~~ 42 (213)
T 2plr_A 13 DGSGKSSQATLLKDWIELKRDVYLTEWNSS 42 (213)
T ss_dssp TTSSHHHHHHHHHHHHTTTSCEEEEETTCC
T ss_pred CCCCHHHHHHHHHHHHHHCCCEEEEECCCC
T ss_conf 987499999999999982898899978999
No 184
>>1ofh_A ATP-dependent HSL protease ATP-binding subunit HSLU; chaperone, hydrolase, ATP-binding; HET: ADP; 2.5A {Haemophilus influenzae} (A:1-201)
Probab=61.73 E-value=3.9 Score=21.16 Aligned_cols=31 Identities=29% Similarity=0.349 Sum_probs=23.9
Q ss_pred CCCCCCEEEECCEEECCCCCCHHHHHHHHHHHHC
Q ss_conf 3388988998230007888748999999998524
Q gi|254780401|r 40 LHAPIPVICVGGFVMGGTGKTPTALAIAKAVIDK 73 (338)
Q Consensus 40 ~~~~~pVI~VGNitvGGtGKTP~v~~l~~~l~~~ 73 (338)
...+.+++-.|-= |||||-++..||+.+...
T Consensus 47 ~~~~~~iLl~GPp---GtGKT~la~~iA~~l~~~ 77 (201)
T 1ofh_A 47 EVTPKNILMIGPT---GVGKTEIARRLAKLANAP 77 (201)
T ss_dssp HCCCCCEEEECCT---TSSHHHHHHHHHHHHTCC
T ss_pred CCCCCEEEEECCC---CCCHHHHHHHHHHHHHCC
T ss_conf 7898669998999---988899999999973234
No 185
>>1gvn_B Zeta; postsegregational killing system, plasmid; 1.95A {Streptococcus pyogenes} (B:)
Probab=61.59 E-value=4.9 Score=20.42 Aligned_cols=25 Identities=28% Similarity=0.311 Sum_probs=19.3
Q ss_pred EEEECCEEECCCCCCHHHHHHHHHHHHC
Q ss_conf 8998230007888748999999998524
Q gi|254780401|r 46 VICVGGFVMGGTGKTPTALAIAKAVIDK 73 (338)
Q Consensus 46 VI~VGNitvGGtGKTP~v~~l~~~l~~~ 73 (338)
|+-.| -=|||||-++.++|+.+...
T Consensus 36 iLL~G---PpGtGKT~la~aiA~e~~~~ 60 (287)
T 1gvn_B 36 FLLGG---QPGSGKTSLRSAIFEETQGN 60 (287)
T ss_dssp EEEEC---CTTSCTHHHHHHHHHHTTTC
T ss_pred EEEEC---CCCCCHHHHHHHHHHHCCCC
T ss_conf 99806---89878899999986241897
No 186
>>2v3c_C SRP54, signal recognition 54 kDa protein; nucleotide-binding, signal recognition particle, GTP-binding, RNA-binding; 2.50A {Methanocaldococcus jannaschii} (C:92-279)
Probab=61.37 E-value=7.1 Score=19.31 Aligned_cols=30 Identities=33% Similarity=0.579 Sum_probs=25.7
Q ss_pred CCCCCCHHHHHHHHHHHHCCCCEEEEEECC
Q ss_conf 788874899999999852473159876045
Q gi|254780401|r 55 GGTGKTPTALAIAKAVIDKNLKPGFLSRGY 84 (338)
Q Consensus 55 GGtGKTP~v~~l~~~l~~~g~~~~ilsRGY 84 (338)
=|+|||-+.-.|+..++..+-++.+..+--
T Consensus 17 nGsGKSTll~~l~~~~~p~~G~V~~~~~di 46 (188)
T 2v3c_C 17 QGSGKTTTAAKLARYIQKRGLKPALIAADT 46 (188)
T ss_dssp SSSSTTHHHHHHHHHHHHHHCCEEEECCSC
T ss_pred CCCCCHHHHHHHHHHHHHCCCCCEEEEEEC
T ss_conf 123620788999999997799743786311
No 187
>>1in4_A RUVB, holliday junction DNA helicase RUVB; AAA+-class ATPase, winged-helix domain, ATP hydrolysis, walker A, walker B, sensor 1, sensor 2; HET: ADP; 1.60A {Thermotoga maritima} (A:1-179)
Probab=61.07 E-value=4 Score=21.03 Aligned_cols=37 Identities=27% Similarity=0.175 Sum_probs=25.5
Q ss_pred CCCCCEEEECCEEECCCCCCHHHHHHHHHHHHCCCCEEEEEEC
Q ss_conf 3889889982300078887489999999985247315987604
Q gi|254780401|r 41 HAPIPVICVGGFVMGGTGKTPTALAIAKAVIDKNLKPGFLSRG 83 (338)
Q Consensus 41 ~~~~pVI~VGNitvGGtGKTP~v~~l~~~l~~~g~~~~ilsRG 83 (338)
..+-.++-.|- -|||||-++..||+.+.. ....++..
T Consensus 49 ~~~~~iLl~Gp---pGtGKT~~A~~la~~~~~---~~~~~~~~ 85 (179)
T 1in4_A 49 EVLDHVLLAGP---PGLGKTTLAHIIASELQT---NIHVTSGP 85 (179)
T ss_dssp CCCCCEEEESS---TTSSHHHHHHHHHHHHTC---CEEEEETT
T ss_pred CCCCEEEEECC---CCCCHHHHHHHHHHHCCC---CCCCCCCC
T ss_conf 88881788898---998899999999982288---74557785
No 188
>>1nkt_A Preprotein translocase SECA 1 subunit; preprotein translocation, ATPase, transmembrane transport, helicase-like motor domain; HET: ADP; 2.60A {Mycobacterium tuberculosis} (A:1-260,A:376-426)
Probab=61.05 E-value=9.1 Score=18.54 Aligned_cols=102 Identities=14% Similarity=0.005 Sum_probs=49.2
Q ss_pred CEEEECCEEE--CCCCCCHHHHHHHHHHHHCCCCEEEEEECCCCCCCCCEEEECCCCCHHHHCCHHHHHHHCCC--C--C
Q ss_conf 8899823000--78887489999999985247315987604578777755871456788770421233220576--3--4
Q gi|254780401|r 45 PVICVGGFVM--GGTGKTPTALAIAKAVIDKNLKPGFLSRGYGRKSRISFRVDLEKHSAYDVGDEPLLLARRAV--T--I 118 (338)
Q Consensus 45 pVI~VGNitv--GGtGKTP~v~~l~~~l~~~g~~~~ilsRGYg~~~~~~~~v~~~~~~~~~vGDEp~lla~~~p--v--~ 118 (338)
+++.=|.|.. -|+|||=+....+-.....|.++.|++ +...-+.+.-++-.-+.+... | +
T Consensus 121 ~~l~~g~iv~~~TG~GKTlv~~lp~~~~al~G~~v~iit--------------pt~~LA~q~~~~~~~l~~~lgi~v~~~ 186 (311)
T 1nkt_A 121 AALHLGNVAEMKTGEGKTLTCVLPAYLNALAGNGVHIVT--------------VNDYLAKRDSEWMGRVHRFLGLQVGVI 186 (311)
T ss_dssp HHHHTTEEEECCTTSCHHHHTHHHHHHHHTTTSCEEEEE--------------SSHHHHHHHHHHHHHHHHHTTCCEEEC
T ss_pred HHHHCCCEEEEECCCCHHHHHHHHHHHHHHCCCCEEEEE--------------CCHHHHHHHHHHHHHHHHHHCCEEEEE
T ss_conf 999379658875688699999999999971799829997--------------698885733998699998819766355
Q ss_pred CCCCHHHHHHHHCCCCCCEEEECCC-------------CCCCCCCCEEEEEEECCCC
Q ss_conf 6520122566410245747997183-------------2234412306999961843
Q gi|254780401|r 119 VTSDRKIGVQMLLQEGVDIIIMDDG-------------FHSADLQADFSLIVVNSHR 162 (338)
Q Consensus 119 V~~~R~~~~~~~~~~~~diiIlDDG-------------fQh~~l~rdl~Ivl~d~~~ 162 (338)
.+...... .....++|+++.--| .++....+.+..+++|-.+
T Consensus 187 ~g~~~~~e--~~~~~~~dIv~~T~~~l~~d~Lr~~~~~~~~~~~~~~l~~~IiDEaD 241 (311)
T 1nkt_A 187 LATMTPDE--RRVAYNADITYGTNNEFGFDYLRDNMAHSLDDLVQRGHHYAIVDEVD 241 (311)
T ss_dssp CTTCCHHH--HHHHHHSSEEEEEHHHHHHHHHHHTTCSSGGGCCCCCCCEEEETTHH
T ss_pred CCCCCHHH--HHHHHCCCCCCCCHHHHHHHHHHHHHCCCHHHHCCCCCCEEEEEECC
T ss_conf 79998699--99744068731679988689987402258776246777613687022
No 189
>>2ggs_A 273AA long hypothetical DTDP-4-dehydrorhamnose reductase; alpha, beta, oxidoreductase; HET: NDP; 1.70A {Sulfolobus tokodaii} (A:)
Probab=61.02 E-value=10 Score=18.13 Aligned_cols=33 Identities=6% Similarity=0.229 Sum_probs=27.5
Q ss_pred EEECCCCCCHHHHHHHHHHHHCCCCEEEEEECCCC
Q ss_conf 00078887489999999985247315987604578
Q gi|254780401|r 52 FVMGGTGKTPTALAIAKAVIDKNLKPGFLSRGYGR 86 (338)
Q Consensus 52 itvGGtGKTP~v~~l~~~l~~~g~~~~ilsRGYg~ 86 (338)
+.+||||- +=.+|++.|.++|+.+.+++|.-..
T Consensus 4 lVtGatGf--IG~~l~~~L~~~G~~v~~~~r~~~~ 36 (273)
T 2ggs_A 4 LITGASGQ--LGIELSRLLSERHEVIKVYNSSEIQ 36 (273)
T ss_dssp EEETTTSH--HHHHHHHHHTTTSCEEEEESSSCCT
T ss_pred EEECCCCH--HHHHHHHHHHCCCCEEEEECCCCCC
T ss_conf 99899988--9999999997299899997787667
No 190
>>3c97_A Signal transduction histidine kinase; structural genomics, signaling, PSI-2, protein structure initiative; 1.70A {Aspergillus oryzae RIB40} (A:1-65)
Probab=61.01 E-value=10 Score=18.10 Aligned_cols=27 Identities=26% Similarity=0.315 Sum_probs=22.1
Q ss_pred CCCCCCCCHHHHHHHHCCCCCCEEEEC
Q ss_conf 763465201225664102457479971
Q gi|254780401|r 115 AVTIVTSDRKIGVQMLLQEGVDIIIMD 141 (338)
Q Consensus 115 ~pv~V~~~R~~~~~~~~~~~~diiIlD 141 (338)
+.|.++.+=.+|.+.+.+..+|+||+|
T Consensus 35 ~~v~~a~~g~~al~~l~~~~~dlil~D 61 (65)
T 3c97_A 35 NDITVVTNGLQALQAYQNRQFDVIIMD 61 (65)
T ss_dssp SEEEEESSHHHHHHHHHHSCCSEEEEC
T ss_pred CEEEEECCHHHHHHHHHHCCCCEEEEE
T ss_conf 999998999999999983899889863
No 191
>>2jlq_A Serine protease subunit NS3; ribonucleoprotein, nucleotide-binding, viral nucleoprotein, endoplasmic reticulum, helicase, hydrolase, transferase; 1.67A {Dengue virus 4} PDB: 2jly_A* 2jls_A* 2jlu_A 2jlv_A* 2jlw_A 2jlx_A* 2jlz_A* 2jlr_A* 2bmf_A 2bhr_A (A:1-156,A:315-395)
Probab=60.99 E-value=7.7 Score=19.04 Aligned_cols=27 Identities=26% Similarity=0.400 Sum_probs=21.8
Q ss_pred CCCCCCHHH-HHHHHHHHHCCCCEEEEE
Q ss_conf 788874899-999999852473159876
Q gi|254780401|r 55 GGTGKTPTA-LAIAKAVIDKNLKPGFLS 81 (338)
Q Consensus 55 GGtGKTP~v-~~l~~~l~~~g~~~~ils 81 (338)
=|+|||-.+ ..+++.+.+.+.++.|+.
T Consensus 28 TGSGKT~~~l~~il~~~~~~~~rvlvla 55 (237)
T 2jlq_A 28 PGAGKTKRILPSIVREALLRRLRTLILA 55 (237)
T ss_dssp TTSSCCTTHHHHHHHHHHHTTCCEEEEE
T ss_pred CCCCHHHHHHHHHHHHHHCCCCEEEEEE
T ss_conf 9984899999999998770798799983
No 192
>>1qvr_A CLPB protein; coiled coil, AAA ATPase, chaperone; HET: ANP; 3.00A {Thermus thermophilus} (A:540-757)
Probab=60.97 E-value=12 Score=17.78 Aligned_cols=40 Identities=20% Similarity=0.163 Sum_probs=29.4
Q ss_pred CCCCCCCCEEEECCEEECCCCCCHHHHHHHHHHHHCCCCEEEE
Q ss_conf 6433889889982300078887489999999985247315987
Q gi|254780401|r 38 QRLHAPIPVICVGGFVMGGTGKTPTALAIAKAVIDKNLKPGFL 80 (338)
Q Consensus 38 ~~~~~~~pVI~VGNitvGGtGKTP~v~~l~~~l~~~g~~~~il 80 (338)
+..+.+.++.-.|.- |||||=++..|++.+...+-....+
T Consensus 44 ~~~~~~~~il~~G~~---GtGKt~lAr~l~~~~~~~~~~fv~v 83 (218)
T 1qvr_A 44 DPNRPIGSFLFLGPT---GVGKTELAKTLAATLFDTEEAMIRI 83 (218)
T ss_dssp CSSSCSEEEEEBSCS---SSSHHHHHHHHHHHHHSSGGGEEEE
T ss_pred CCCCCCEEEEEECCC---CCCHHHHHHHHHHHHCCCCCCEEEE
T ss_conf 999986589987788---7337999999999962896406996
No 193
>>1a5t_A Delta prime, HOLB; zinc finger, DNA replication; 2.20A {Escherichia coli} (A:1-166)
Probab=60.96 E-value=4 Score=21.06 Aligned_cols=31 Identities=10% Similarity=0.177 Sum_probs=21.4
Q ss_pred CCCCCEEEECCEEECCCCCCHHHHHHHHHHHHCC
Q ss_conf 3889889982300078887489999999985247
Q gi|254780401|r 41 HAPIPVICVGGFVMGGTGKTPTALAIAKAVIDKN 74 (338)
Q Consensus 41 ~~~~pVI~VGNitvGGtGKTP~v~~l~~~l~~~g 74 (338)
+.|-.++-.|- -|||||-++.++|+.+....
T Consensus 22 ~~~~~iLl~Gp---pGtGKt~lA~~lA~~l~~~~ 52 (166)
T 1a5t_A 22 RGHHALLIQAL---PGMGDDALIYALSRYLLCQQ 52 (166)
T ss_dssp CCCSEEEEECC---TTSCHHHHHHHHHHHHTCSS
T ss_pred CCCCEEEEECC---CCCCHHHHHHHHHHHHHCCC
T ss_conf 96725846899---99779999999999970879
No 194
>>1u94_A RECA protein, recombinase A; homologous recombination, ATPase, DNA repair, DNA binding protein; 1.90A {Escherichia coli} (A:37-273)
Probab=60.92 E-value=8.1 Score=18.89 Aligned_cols=27 Identities=22% Similarity=0.324 Sum_probs=24.4
Q ss_pred CCCCCCHHHHHHHHHHHHCCCCEEEEE
Q ss_conf 788874899999999852473159876
Q gi|254780401|r 55 GGTGKTPTALAIAKAVIDKNLKPGFLS 81 (338)
Q Consensus 55 GGtGKTP~v~~l~~~l~~~g~~~~ils 81 (338)
=|||||-++.-++-.....|.++..++
T Consensus 36 pGsGKT~l~~q~~~~~~~~g~~~lyi~ 62 (237)
T 1u94_A 36 ESSGKTTLTLQVIAAAQREGKTCAFID 62 (237)
T ss_dssp TTSSHHHHHHHHHHHHHHTTCCEEEEE
T ss_pred CCCCHHHHHHHHHHHHHCCCCEEEEEE
T ss_conf 767789999999999855798699981
No 195
>>2gks_A Bifunctional SAT/APS kinase; transferase, sulfurylase; HET: ADP; 2.31A {Aquifex aeolicus} (A:369-546)
Probab=60.88 E-value=7.4 Score=19.17 Aligned_cols=28 Identities=21% Similarity=0.210 Sum_probs=23.8
Q ss_pred CCCCCCHHHHHHHHHHHHCCCCEEEEEE
Q ss_conf 7888748999999998524731598760
Q gi|254780401|r 55 GGTGKTPTALAIAKAVIDKNLKPGFLSR 82 (338)
Q Consensus 55 GGtGKTP~v~~l~~~l~~~g~~~~ilsR 82 (338)
-|+|||-+...|++.|.........+..
T Consensus 13 ~GsGKSTia~~La~~l~~~~~~~~~~~~ 40 (178)
T 2gks_A 13 PCAGKSTIAEILATMLQARGRKVTLLDG 40 (178)
T ss_dssp TTSSHHHHHHHHHHHHHHTTCCEEEECH
T ss_pred CCCHHHHHHHHHHHHHHHCCCEEEEECC
T ss_conf 5882759999999999866981999887
No 196
>>2p6r_A Afuhel308 helicase; protein-DNA complex, SF2 helicase, archaeal helicase, DNA repair,, DNA binding protein/DNA complex; 3.00A {Archaeoglobus fulgidus} (A:1-202)
Probab=60.82 E-value=2.3 Score=22.78 Aligned_cols=27 Identities=22% Similarity=0.022 Sum_probs=19.3
Q ss_pred CCCCCCHHHHHHHHHHHHCCCCEEEEE
Q ss_conf 788874899999999852473159876
Q gi|254780401|r 55 GGTGKTPTALAIAKAVIDKNLKPGFLS 81 (338)
Q Consensus 55 GGtGKTP~v~~l~~~l~~~g~~~~ils 81 (338)
=|+|||-....-+......|-+..+++
T Consensus 49 TGsGKT~~~~l~~~~~~~~~~~~l~l~ 75 (202)
T 2p6r_A 49 TAAGKTLLAEMAMVREAIKGGKSLYVV 75 (202)
T ss_dssp SHHHHHHHHHHHHHHHHHTTCCEEEEE
T ss_pred CCCHHHHHHHHHHHHHHHCCCCEEEEC
T ss_conf 986299999999999986199599992
No 197
>>3bs4_A Uncharacterized protein PH0321; structural genomics, unknown function, PSI-2, protein structure initiative; 1.60A {Pyrococcus horikoshii OT3} (A:)
Probab=60.38 E-value=6.9 Score=19.39 Aligned_cols=28 Identities=11% Similarity=0.086 Sum_probs=25.4
Q ss_pred CCCCCCHHHHHHHHHHHHCCCCEEEEEE
Q ss_conf 7888748999999998524731598760
Q gi|254780401|r 55 GGTGKTPTALAIAKAVIDKNLKPGFLSR 82 (338)
Q Consensus 55 GGtGKTP~v~~l~~~l~~~g~~~~ilsR 82 (338)
=|+|||-++..++......|.++..+|-
T Consensus 30 ~g~GKT~~~~~~a~~~~~~g~~v~~i~~ 57 (260)
T 3bs4_A 30 ASSRGKDILFYILSRKLKSDNLVGMFSI 57 (260)
T ss_dssp GGGCHHHHHHHHHHHHHHTTCEEEEEEC
T ss_pred CCCCHHHHHHHHHHHHHHCCCCEEEEEE
T ss_conf 9999899999999999867993799980
No 198
>>1tf7_A KAIC; homohexamer, hexamer, circadian clock protein; HET: ATP; 2.80A {Synechococcus SP} (A:255-525)
Probab=60.29 E-value=8.4 Score=18.77 Aligned_cols=27 Identities=19% Similarity=0.214 Sum_probs=24.8
Q ss_pred CCCCCCHHHHHHHHHHHHCCCCEEEEE
Q ss_conf 788874899999999852473159876
Q gi|254780401|r 55 GGTGKTPTALAIAKAVIDKNLKPGFLS 81 (338)
Q Consensus 55 GGtGKTP~v~~l~~~l~~~g~~~~ils 81 (338)
=|+|||-++.-++....+.|.++..+|
T Consensus 36 pGsGKT~l~~q~~~~~~~~g~~~lyis 62 (271)
T 1tf7_A 36 TGTGKTLLVSRFVENACANKERAILFA 62 (271)
T ss_dssp TTSSHHHHHHHHHHHHHTTTCCEEEEE
T ss_pred CCCHHHHHHHHHHHHHHHCCCCEEEEE
T ss_conf 876699999999999986599439998
No 199
>>3ehe_A UDP-glucose 4-epimerase (GALE-1); PSI-II, NYSGXRC, structural genomics, protein structure initiative; HET: NAD; 1.87A {Archaeoglobus fulgidus} (A:1-166)
Probab=60.07 E-value=10 Score=18.19 Aligned_cols=33 Identities=18% Similarity=0.179 Sum_probs=26.7
Q ss_pred EEECCCCCCHHHHHHHHHHHHCCCCEEEEEECCCC
Q ss_conf 00078887489999999985247315987604578
Q gi|254780401|r 52 FVMGGTGKTPTALAIAKAVIDKNLKPGFLSRGYGR 86 (338)
Q Consensus 52 itvGGtGKTP~v~~l~~~l~~~g~~~~ilsRGYg~ 86 (338)
+.+|||| =+-.+|++.|.++|+.+.+++|.=..
T Consensus 5 lItGatG--~iG~~l~~~L~~~g~~v~~~~r~~~~ 37 (166)
T 3ehe_A 5 VVTGGAG--FIGSHVVDKLSESNEIVVIDNLSSGN 37 (166)
T ss_dssp EEETTTS--HHHHHHHHHHTTTSCEEEECCCSSCC
T ss_pred EECCCCC--HHHHHHHHHHHHCCCEEEEECCCCCC
T ss_conf 9877886--99999999998399889998689888
No 200
>>1vp8_A Hypothetical protein AF0103; NP_068944.1, structural genomics, JCSG, joint center for structural genomics, PSI; HET: MSE FMN; 1.30A {Archaeoglobus fulgidus dsm 4304} (A:)
Probab=59.92 E-value=0.19 Score=30.49 Aligned_cols=29 Identities=14% Similarity=0.201 Sum_probs=18.0
Q ss_pred CCCCHHHHHHHHC-CCCCCEEEECCCCCCC
Q ss_conf 6520122566410-2457479971832234
Q gi|254780401|r 119 VTSDRKIGVQMLL-QEGVDIIIMDDGFHSA 147 (338)
Q Consensus 119 V~~~R~~~~~~~~-~~~~diiIlDDGfQh~ 147 (338)
.+..=..++..+. +.+.+|++.|+..+..
T Consensus 50 lG~SG~sa~a~Ll~~~G~~V~v~D~~~~~~ 79 (201)
T 1vp8_A 50 ASSYGDTAXKALEXAEGLEVVVVTYHTGFV 79 (201)
T ss_dssp ECSSSHHHHHHHHHCTTCEEEEEECCTTSS
T ss_pred EECCCHHHHHHHHHHCCCCEEEEECCCCCC
T ss_conf 817866999999983598099995646878
No 201
>>2ccj_A DTMP kinase, thymidylate kinase; transferase, nucleotide biosynthesis, TMP-binding, ATP-binding; HET: TMP; 1.7A {Staphylococcus aureus} PDB: 2cck_A 2ccg_A* (A:)
Probab=59.76 E-value=7.3 Score=19.22 Aligned_cols=30 Identities=17% Similarity=0.080 Sum_probs=22.9
Q ss_pred CCCCCCHHHHHHHHHHHHCCCCEEEEEECC
Q ss_conf 788874899999999852473159876045
Q gi|254780401|r 55 GGTGKTPTALAIAKAVIDKNLKPGFLSRGY 84 (338)
Q Consensus 55 GGtGKTP~v~~l~~~l~~~g~~~~ilsRGY 84 (338)
=|+|||-++..|++.+..........-+.|
T Consensus 11 ~GsGKTTla~~L~~~l~~~~~~~~~~~~~~ 40 (205)
T 2ccj_A 11 EGSGKTTVINEVYHRLVKDYDVIMTREPGG 40 (205)
T ss_dssp TTSCHHHHHHHHHHHHTTTSCEEEEESSTT
T ss_pred CCCCHHHHHHHHHHHHHCCCCEEEEECCCC
T ss_conf 888599999999999966998899879999
No 202
>>1cr0_A DNA primase/helicase; RECA-type protein fold, transferase; HET: DNA; 2.30A {Bacteriophage T7} (A:24-296)
Probab=59.64 E-value=8.8 Score=18.62 Aligned_cols=30 Identities=20% Similarity=0.068 Sum_probs=23.6
Q ss_pred CCCCCCHHHHHHHHH-HHHCCCCEEEEEECC
Q ss_conf 788874899999999-852473159876045
Q gi|254780401|r 55 GGTGKTPTALAIAKA-VIDKNLKPGFLSRGY 84 (338)
Q Consensus 55 GGtGKTP~v~~l~~~-l~~~g~~~~ilsRGY 84 (338)
.|+|||-++..++.. ....|.++..++=..
T Consensus 21 ~G~GKT~l~~~~~~~~~~~~g~~vl~~~~e~ 51 (273)
T 1cr0_A 21 SGMGKSTFVRQQALQWGTAMGKKVGLAMLEE 51 (273)
T ss_dssp TTSSHHHHHHHHHHHHHHTSCCCEEEEESSS
T ss_pred CCCCHHHHHHHHHHHHHHHHHCCCCEEECCH
T ss_conf 9985999999999987774200202100101
No 203
>>2dr3_A UPF0273 protein PH0284; RECA superfamily ATPase, hexamer, X-RAY diffraction, structural genomics, NPPSFA; HET: ADP; 2.00A {Pyrococcus horikoshii OT3} (A:)
Probab=59.57 E-value=8.8 Score=18.62 Aligned_cols=28 Identities=18% Similarity=0.069 Sum_probs=25.3
Q ss_pred CCCCCCHHHHHHHHHHHHCCCCEEEEEE
Q ss_conf 7888748999999998524731598760
Q gi|254780401|r 55 GGTGKTPTALAIAKAVIDKNLKPGFLSR 82 (338)
Q Consensus 55 GGtGKTP~v~~l~~~l~~~g~~~~ilsR 82 (338)
=|+|||-++.-++......|.++..++-
T Consensus 32 ~GsGKt~~~~~~~~~~~~~g~~~~~~~~ 59 (247)
T 2dr3_A 32 PGTGKTIFSQQFLWNGLKMGEPGIYVAL 59 (247)
T ss_dssp TTSSHHHHHHHHHHHHHHTTCCEEEEES
T ss_pred CCCCHHHHHHHHHHHHHHHCCCEECCCC
T ss_conf 9988999999999999870797510555
No 204
>>1zxx_A 6-phosphofructokinase; allosteric regulation, lactobacillus bulgaricus, transferase; 1.85A {Lactobacillus delbrueckii subsp} (A:1-131,A:253-303)
Probab=59.46 E-value=8.7 Score=18.67 Aligned_cols=111 Identities=18% Similarity=0.276 Sum_probs=66.3
Q ss_pred ECCEEECCC--CCCHHHHHHHHHHHHCCCCEEEEEECCCCCCCCCEEEECCCC--CHHHHCCHHHHHHHCCCCCC-CCCH
Q ss_conf 823000788--874899999999852473159876045787777558714567--88770421233220576346-5201
Q gi|254780401|r 49 VGGFVMGGT--GKTPTALAIAKAVIDKNLKPGFLSRGYGRKSRISFRVDLEKH--SAYDVGDEPLLLARRAVTIV-TSDR 123 (338)
Q Consensus 49 VGNitvGGt--GKTP~v~~l~~~l~~~g~~~~ilsRGYg~~~~~~~~v~~~~~--~~~~vGDEp~lla~~~pv~V-~~~R 123 (338)
||=+|.||- |=-..+..+++.....|+++.-+-+||.+-..+.+...+..+ .....|- ..|-..+++-.. ..++
T Consensus 4 I~IltsGGdaPGlNa~Ir~vv~~a~~~g~~v~G~~~G~~GL~~~~~~~l~~~~v~~i~~~GG-tiLgtsR~~~~~~~~~~ 82 (182)
T 1zxx_A 4 IGILTSGGDAPGMNAAVRAVTRVAIANGLEVFGIRYGFAGLVAGDIFPLESEDVAHLINVSG-TFLYSARYPEFAEEEGQ 82 (182)
T ss_dssp EEEEECSSCCTTHHHHHHHHHHHHHTTTCEEEEECTHHHHHHHTCEEECCGGGGTTCTTCCS-CTTCCCCCGGGTSHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHHHHHHHCCCEEEEECCCHHHHCCCCEEECCHHHHHHHHHCCC-CCCCCCCCCCCCCHHHH
T ss_conf 99988578737799999999999997899899987306874689917799999876773377-40135777755555667
Q ss_pred HHHHHHHCCCCCCEEEE---CCCCCCCCCC--CEEEEEEECC
Q ss_conf 22566410245747997---1832234412--3069999618
Q gi|254780401|r 124 KIGVQMLLQEGVDIIIM---DDGFHSADLQ--ADFSLIVVNS 160 (338)
Q Consensus 124 ~~~~~~~~~~~~diiIl---DDGfQh~~l~--rdl~Ivl~d~ 160 (338)
.++++.+.+.+.|.+|. |+-|+--..- -++.++-+..
T Consensus 83 ~~~~~~l~~~~Id~LivIGGdGS~~~a~~L~~~gi~vIgIPk 124 (182)
T 1zxx_A 83 LAGIEQLKKHGIDAVVVIGGDGSYHGALQLTRHGFNSIGLPG 124 (182)
T ss_dssp HHHHHHHHHTTCCEEEEEECHHHHHHHHHHHHTTCCEEEEEE
T ss_pred HHHHHHHHHHCCCEEEEECCCCHHHHHHHHHHCCCCCCCEEE
T ss_conf 778889987078889996797279999987542466443023
No 205
>>2c20_A UDP-glucose 4-epimerase; carbohydrate metabolism, galactose metabolism, isomerase, NAD, spine; HET: NAD; 2.7A {Bacillus anthracis} (A:)
Probab=59.45 E-value=12 Score=17.60 Aligned_cols=34 Identities=18% Similarity=0.256 Sum_probs=28.4
Q ss_pred EEECCCCCCHHHHHHHHHHHHCCCCEEEEEECCCCC
Q ss_conf 000788874899999999852473159876045787
Q gi|254780401|r 52 FVMGGTGKTPTALAIAKAVIDKNLKPGFLSRGYGRK 87 (338)
Q Consensus 52 itvGGtGKTP~v~~l~~~l~~~g~~~~ilsRGYg~~ 87 (338)
+++|||| -+-.+|++.|.++|+.+.++.|.....
T Consensus 5 lVTGatG--fiG~~lv~~Ll~~g~~V~~~~r~~~~~ 38 (330)
T 2c20_A 5 LICGGAG--YIGSHAVKKLVDEGLSVVVVDNLQTGH 38 (330)
T ss_dssp EEETTTS--HHHHHHHHHHHHTTCEEEEEECCSSCC
T ss_pred EECCCCC--HHHHHHHHHHHHCCCEEEEEECCCCCC
T ss_conf 9888888--899999999997839899997888678
No 206
>>2pia_A Phthalate dioxygenase reductase; HET: FMN; 2.00A {Burkholderia cepacia} (A:109-229)
Probab=59.43 E-value=6 Score=19.80 Aligned_cols=29 Identities=21% Similarity=0.198 Sum_probs=21.7
Q ss_pred EEECCCCCCHHHHHHHHHHHHCCCCEEEE
Q ss_conf 00078887489999999985247315987
Q gi|254780401|r 52 FVMGGTGKTPTALAIAKAVIDKNLKPGFL 80 (338)
Q Consensus 52 itvGGtGKTP~v~~l~~~l~~~g~~~~il 80 (338)
+..||||=||+.-++-..+.+..-++.++
T Consensus 8 ~iagG~GiaP~~s~l~~~~~~~~~~v~l~ 36 (121)
T 2pia_A 8 LVAGGIGITPMLSMARQLRAEGLRSFRLY 36 (121)
T ss_dssp EEEEGGGHHHHHHHHHHHHHHCSSEEEEE
T ss_pred EEEECCCCCHHHHHHHHHHHHCCCCCEEE
T ss_conf 99825777608999999987214772589
No 207
>>1sxj_D Activator 1 41 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ ATPase, DNA polymerase; HET: ATG ADP; 2.85A {Saccharomyces cerevisiae} (D:1-191)
Probab=59.36 E-value=4.5 Score=20.71 Aligned_cols=26 Identities=38% Similarity=0.538 Sum_probs=19.4
Q ss_pred CEEEECCEEECCCCCCHHHHHHHHHHHHC
Q ss_conf 88998230007888748999999998524
Q gi|254780401|r 45 PVICVGGFVMGGTGKTPTALAIAKAVIDK 73 (338)
Q Consensus 45 pVI~VGNitvGGtGKTP~v~~l~~~l~~~ 73 (338)
.++-.|. -|||||-++.++|+.|...
T Consensus 60 ~~Ll~Gp---pG~GKT~~a~ala~~l~~~ 85 (191)
T 1sxj_D 60 HMLFYGP---PGTGKTSTILALTKELYGP 85 (191)
T ss_dssp CEEEECS---TTSSHHHHHHHHHHHHHHH
T ss_pred EEEEECC---CCCCHHHHHHHHHHHHCCC
T ss_conf 3998898---9999899999999851455
No 208
>>2qz4_A Paraplegin; AAA+, SPG7, protease, ADP, structural genomics, structural genomics consortium, SGC, ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.22A {Homo sapiens} (A:1-177)
Probab=59.23 E-value=4.5 Score=20.69 Aligned_cols=32 Identities=25% Similarity=0.198 Sum_probs=22.8
Q ss_pred CCEEEECCEEECCCCCCHHHHHHHHHHHHCCCCEEEEE
Q ss_conf 98899823000788874899999999852473159876
Q gi|254780401|r 44 IPVICVGGFVMGGTGKTPTALAIAKAVIDKNLKPGFLS 81 (338)
Q Consensus 44 ~pVI~VGNitvGGtGKTP~v~~l~~~l~~~g~~~~ils 81 (338)
--++..|- -|||||-++.++|+.+. .....++
T Consensus 40 ~giLL~GP---pGtGKT~la~alA~~~~---~~~~~~~ 71 (177)
T 2qz4_A 40 KGALLLGP---PGCGKTLLAKAVATEAQ---VPFLAMA 71 (177)
T ss_dssp CEEEEESC---TTSSHHHHHHHHHHHHT---CCEEEEE
T ss_pred CCEEEECC---CCCCCCHHHHHHHHCCC---CCEEEEE
T ss_conf 84387579---99884215688751358---9739988
No 209
>>3ew7_A LMO0794 protein; Q8Y8U8_lismo, putative NAD-dependent epimerase/dehydratase, LMR162, NESG, structural genomics, PSI-2; 2.73A {Listeria monocytogenes} (A:)
Probab=59.20 E-value=12 Score=17.57 Aligned_cols=33 Identities=18% Similarity=0.336 Sum_probs=27.2
Q ss_pred EEECCCCCCHHHHHHHHHHHHCCCCEEEEEECCCC
Q ss_conf 00078887489999999985247315987604578
Q gi|254780401|r 52 FVMGGTGKTPTALAIAKAVIDKNLKPGFLSRGYGR 86 (338)
Q Consensus 52 itvGGtGKTP~v~~l~~~l~~~g~~~~ilsRGYg~ 86 (338)
+.+||||. +=..|++.|.++|+.+..++|.-..
T Consensus 4 lItGatG~--iG~~l~~~L~~~g~~v~~~~r~~~~ 36 (221)
T 3ew7_A 4 GIIGATGR--AGSRILEEAKNRGHEVTAIVRNAGK 36 (221)
T ss_dssp EEETTTSH--HHHHHHHHHHHTTCEEEEEESCSHH
T ss_pred EEECCCCH--HHHHHHHHHHHCCCEEEEEECCHHH
T ss_conf 99999848--9999999999785989999898677
No 210
>>1q57_A DNA primase/helicase; dntpase, DNA replication, transferase; HET: DNA; 3.45A {Enterobacteria phage T7} (A:231-503)
Probab=58.98 E-value=5.1 Score=20.34 Aligned_cols=29 Identities=14% Similarity=-0.065 Sum_probs=23.1
Q ss_pred CCCCCCHHHHHHHHH-HHHCCCCEEEEEEC
Q ss_conf 788874899999999-85247315987604
Q gi|254780401|r 55 GGTGKTPTALAIAKA-VIDKNLKPGFLSRG 83 (338)
Q Consensus 55 GGtGKTP~v~~l~~~-l~~~g~~~~ilsRG 83 (338)
-|+|||-++..++.. ....|.++..+|=.
T Consensus 21 ~g~GKT~l~~~~~~~~~~~~g~~vl~~~~E 50 (273)
T 1q57_A 21 SGMVMSTFVRQQALQWGTAMGKKVGLAMLE 50 (273)
T ss_dssp SCHHHHHHHHHHHHHHTTTSCCCEEEEESS
T ss_pred CCHHHHHHHHHHHHHHHHHCCCCCCCCCCC
T ss_conf 424299999998875665137732334334
No 211
>>1uaa_A REP helicase, protein (ATP-dependent DNA helicase REP.); complex (helicase/DNA), DNA unwinding, hydrolase/DNA complex; HET: DNA; 3.00A {Escherichia coli} (A:1-102,A:185-277)
Probab=58.94 E-value=6.7 Score=19.47 Aligned_cols=28 Identities=18% Similarity=0.120 Sum_probs=19.6
Q ss_pred ECCCCCCHHHHHHHHHHHHCC----CCEEEEE
Q ss_conf 078887489999999985247----3159876
Q gi|254780401|r 54 MGGTGKTPTALAIAKAVIDKN----LKPGFLS 81 (338)
Q Consensus 54 vGGtGKTP~v~~l~~~l~~~g----~~~~ils 81 (338)
.-|||||=+....+.++...+ .++.+++
T Consensus 23 ~~GsGKT~~~~~~~~~ll~~~~~~~~~il~v~ 54 (195)
T 1uaa_A 23 GAGSGKTRVITNKIAHLIRGCGYQARHIAAVT 54 (195)
T ss_dssp CTTSCHHHHHHHHHHHHHHHHCCCGGGEEEEE
T ss_pred ECCHHHHHHHHHHHHHHHHHCCCCHHHEEEEC
T ss_conf 08447999999999999980898960499875
No 212
>>3cmw_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 2.80A {Escherichia coli} PDB: 3cmt_A* 3cmx_A* 3cmv_A* (A:1405-1641)
Probab=58.90 E-value=8.1 Score=18.89 Aligned_cols=27 Identities=22% Similarity=0.324 Sum_probs=24.2
Q ss_pred CCCCCCHHHHHHHHHHHHCCCCEEEEE
Q ss_conf 788874899999999852473159876
Q gi|254780401|r 55 GGTGKTPTALAIAKAVIDKNLKPGFLS 81 (338)
Q Consensus 55 GGtGKTP~v~~l~~~l~~~g~~~~ils 81 (338)
=|||||-++.-++-.....|.++..++
T Consensus 36 pGsGKT~l~~q~~~~~~~~g~~~lyi~ 62 (237)
T 3cmw_A 36 ESSGKTTLTLQVIAAAQREGKTCAFID 62 (237)
T ss_dssp TTSSHHHHHHHHHHHHHHTTCCEEEEC
T ss_pred CCCCCEEEEHHHHHHHCCCCCHHHHCC
T ss_conf 887737775876544404452454336
No 213
>>1njg_A DNA polymerase III subunit gamma; rossman-like fold, AAA+ ATPase domains, sensor 1, sensor 2, transferase; HET: DNA; 2.20A {Escherichia coli} (A:1-185)
Probab=58.89 E-value=4.6 Score=20.66 Aligned_cols=32 Identities=25% Similarity=0.220 Sum_probs=23.2
Q ss_pred CCCCCCEEEECCEEECCCCCCHHHHHHHHHHHHCC
Q ss_conf 33889889982300078887489999999985247
Q gi|254780401|r 40 LHAPIPVICVGGFVMGGTGKTPTALAIAKAVIDKN 74 (338)
Q Consensus 40 ~~~~~pVI~VGNitvGGtGKTP~v~~l~~~l~~~g 74 (338)
.+.+-.++-.|- -|||||.++.++|+.|....
T Consensus 42 ~~~~~~lLl~Gp---pG~GKt~la~~lA~~l~~~~ 73 (185)
T 1njg_A 42 GRIHHAYLFSGT---RGVGKTSIARLLAKGLNCET 73 (185)
T ss_dssp TCCCSEEEEECS---TTSCHHHHHHHHHHHHHCTT
T ss_pred CCCCEEEEEECC---CCCCHHHHHHHHHHHHCCCC
T ss_conf 998706988899---98768999999999846854
No 214
>>3cmu_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 4.20A {Escherichia coli} (A:1749-1985)
Probab=58.87 E-value=8.1 Score=18.89 Aligned_cols=27 Identities=22% Similarity=0.324 Sum_probs=24.2
Q ss_pred CCCCCCHHHHHHHHHHHHCCCCEEEEE
Q ss_conf 788874899999999852473159876
Q gi|254780401|r 55 GGTGKTPTALAIAKAVIDKNLKPGFLS 81 (338)
Q Consensus 55 GGtGKTP~v~~l~~~l~~~g~~~~ils 81 (338)
=|||||-++.-++-.....|.++..++
T Consensus 36 pGsGKT~l~~q~~~~~~~~g~~~lyi~ 62 (237)
T 3cmu_A 36 ESSGKTTLTLQVIAAAQREGKTCAFID 62 (237)
T ss_dssp TTSSHHHHHHHHHHHHHTTTCCEEEEC
T ss_pred CCCCCCCCCEEEEHHHCCCCCCCEEEE
T ss_conf 766667301011075528876404663
No 215
>>1orr_A CDP-tyvelose-2-epimerase; rossmann fold, short-chain dehydrogenase/reductase, isomerase; HET: NAD CDP; 1.50A {Salmonella typhi} (A:)
Probab=58.79 E-value=13 Score=17.52 Aligned_cols=31 Identities=13% Similarity=0.198 Sum_probs=25.6
Q ss_pred EEECCCCCCHHHHHHHHHHHHCCCCEEEEEECC
Q ss_conf 000788874899999999852473159876045
Q gi|254780401|r 52 FVMGGTGKTPTALAIAKAVIDKNLKPGFLSRGY 84 (338)
Q Consensus 52 itvGGtGKTP~v~~l~~~l~~~g~~~~ilsRGY 84 (338)
+.+|||| -+=.+|++.|.++|+.+.++.|.-
T Consensus 5 lITGatG--fiG~~l~~~Ll~~g~~v~~~~~~~ 35 (347)
T 1orr_A 5 LITGGCG--FLGSNLASFALSQGIDLIVFDNLS 35 (347)
T ss_dssp EEETTTS--HHHHHHHHHHHHTTCEEEEEECCC
T ss_pred EEECCCC--HHHHHHHHHHHHCCCEEEEEECCC
T ss_conf 9918874--899999999997839899997988
No 216
>>1e9r_A Conjugal transfer protein TRWB; coupling protein, bacterial conjugation, F1-ATPase-like quaternary structure, ring helicases; 2.4A {Escherichia coli} (A:24-137,A:224-347,A:402-437)
Probab=58.79 E-value=8.4 Score=18.80 Aligned_cols=27 Identities=19% Similarity=0.143 Sum_probs=23.0
Q ss_pred CCCCCCHHHHHHHHHHHHCCCCEEEEE
Q ss_conf 788874899999999852473159876
Q gi|254780401|r 55 GGTGKTPTALAIAKAVIDKNLKPGFLS 81 (338)
Q Consensus 55 GGtGKTP~v~~l~~~l~~~g~~~~ils 81 (338)
=|+|||-+...++..+...|..+.|+-
T Consensus 39 TGsGKT~~l~~li~~l~~~~~~~~iiD 65 (274)
T 1e9r_A 39 TGTGKSVLLRELAYTGLLRGDRMVIVD 65 (274)
T ss_dssp TTSSHHHHHHHHHHHHHHTTCEEEEEE
T ss_pred CCCCHHHHHHHHHHHHHHCCCCEEEEE
T ss_conf 999889999999999985899889997
No 217
>>2v9p_A Replication protein E1; AAA+ molecular motor, DNA replication, DNA translocation, nucleotide-binding, DNA-binding, early protein; 3.00A {Bovine papillomavirus type 1} PDB: 2gxa_A* (A:77-305)
Probab=58.66 E-value=11 Score=18.03 Aligned_cols=32 Identities=13% Similarity=0.079 Sum_probs=23.6
Q ss_pred CCCCCCCEEEECCEEECCCCCCHHHHHHHHHHHHC
Q ss_conf 43388988998230007888748999999998524
Q gi|254780401|r 39 RLHAPIPVICVGGFVMGGTGKTPTALAIAKAVIDK 73 (338)
Q Consensus 39 ~~~~~~pVI~VGNitvGGtGKTP~v~~l~~~l~~~ 73 (338)
.......+|..|. ||||||-+...|++.+...
T Consensus 46 ~~~~~~~~il~Gp---~gtGKst~~~~i~~~~~~~ 77 (229)
T 2v9p_A 46 GIPKKNCLAFIGP---PNTGKSMLCNSLIHFLGGS 77 (229)
T ss_dssp TCTTCSEEEEECS---SSSSHHHHHHHHHHHHTCE
T ss_pred CCCCCEEEEEECC---CCCCHHHHHHHHHHHHCCC
T ss_conf 8997418999879---9988899999999983887
No 218
>>1rif_A DAR protein, DNA helicase UVSW; bacteriophage, RECG, SF2, DNA binding protein; HET: DNA; 2.00A {Enterobacteria phage T4} (A:88-282)
Probab=58.48 E-value=7.6 Score=19.11 Aligned_cols=28 Identities=11% Similarity=0.112 Sum_probs=18.8
Q ss_pred ECCCCCCHHHHHHHHHHHHC-CCCEEEEE
Q ss_conf 07888748999999998524-73159876
Q gi|254780401|r 54 MGGTGKTPTALAIAKAVIDK-NLKPGFLS 81 (338)
Q Consensus 54 vGGtGKTP~v~~l~~~l~~~-g~~~~ils 81 (338)
.=|+|||...+.++..+... +.++.++.
T Consensus 49 ~tG~GKT~~~~~~~~~~~~~~~~~~~ii~ 77 (195)
T 1rif_A 49 PTSAGRSLIQALLARYYLENYEGKILIIV 77 (195)
T ss_dssp CTTSCHHHHHHHHHHHHHHHCSSEEEEEC
T ss_pred ECCCCHHHHHHHHHHHHHHCCCCEEEEEE
T ss_conf 40367007999999986523673599997
No 219
>>1m8p_A Sulfate adenylyltransferase; rossmann fold, phosphosulfate binding, T-state; HET: PPS; 2.60A {Penicillium chrysogenum} (A:392-573)
Probab=58.12 E-value=7.4 Score=19.17 Aligned_cols=31 Identities=19% Similarity=0.106 Sum_probs=25.9
Q ss_pred ECCCCCCHHHHHHHHHHHHCCCCEEEEEECC
Q ss_conf 0788874899999999852473159876045
Q gi|254780401|r 54 MGGTGKTPTALAIAKAVIDKNLKPGFLSRGY 84 (338)
Q Consensus 54 vGGtGKTP~v~~l~~~l~~~g~~~~ilsRGY 84 (338)
.-|||||-++..|++.|....+...-+.++.
T Consensus 13 ~~GsGKsTla~~La~~l~~~~~~~~~~~~~~ 43 (182)
T 1m8p_A 13 YMNSGKDAIARALQVTLNQQGGRSVSLLLGD 43 (182)
T ss_dssp STTSSHHHHHHHHHHHHHHHCSSCEEEEEHH
T ss_pred CCCCCHHHHHHHHHHHHHHCCCCEEEEECHH
T ss_conf 8998875999999999997479638982689
No 220
>>3tmk_A Thymidylate kinase; phosphotransferase; HET: T5A; 2.00A {Saccharomyces cerevisiae} (A:)
Probab=58.11 E-value=6.7 Score=19.47 Aligned_cols=32 Identities=22% Similarity=0.105 Sum_probs=21.9
Q ss_pred CEEEECCEEECCCCCCHHHHHHHHHHHHCCCCEEE
Q ss_conf 88998230007888748999999998524731598
Q gi|254780401|r 45 PVICVGGFVMGGTGKTPTALAIAKAVIDKNLKPGF 79 (338)
Q Consensus 45 pVI~VGNitvGGtGKTP~v~~l~~~l~~~g~~~~i 79 (338)
-|+..|+. |+|||-++..|++.|...+..+..
T Consensus 7 iI~i~G~~---GsGKsTla~~L~~~l~~~~~~~~~ 38 (216)
T 3tmk_A 7 LILIEGLD---RTGKTTQCNILYKKLQPNCKLLKF 38 (216)
T ss_dssp EEEEEECS---SSSHHHHHHHHHHHHCSSEEEEES
T ss_pred EEEEECCC---CCCHHHHHHHHHHHHHCCCEEEEE
T ss_conf 89998998---887999999999999709889997
No 221
>>3kx2_B PRE-mRNA-splicing factor ATP-dependent RNA helicase PRP43; REC-A domains, OB fold, winged-helix domain, ATP-binding, mRNA processing; HET: ADP; 2.20A {Saccharomyces cerevisiae} (B:48-269)
Probab=58.07 E-value=13 Score=17.44 Aligned_cols=12 Identities=0% Similarity=0.027 Sum_probs=6.0
Q ss_pred CCHHHHHHHHHH
Q ss_conf 535789998874
Q gi|254780401|r 232 ADTEKFFTTVRQ 243 (338)
Q Consensus 232 a~P~~F~~~L~~ 243 (338)
+.|++|.+.+.+
T Consensus 144 ~Tp~~l~~~l~~ 155 (222)
T 3kx2_B 144 MTDGMLLREAME 155 (222)
T ss_dssp EEHHHHHHHHHH
T ss_pred ECCHHHHHHHHH
T ss_conf 733899999864
No 222
>>3pfk_A Phosphofructokinase; transferase(phosphotransferase); 2.40A {Bacillus stearothermophilus} (A:1-131,A:251-305)
Probab=57.46 E-value=12 Score=17.74 Aligned_cols=111 Identities=17% Similarity=0.285 Sum_probs=64.9
Q ss_pred ECCEEECCC--CCCHHHHHHHHHHHHCCCCEEEEEECCCCCCCCCEEEECCCC--CHHHHCCHHHHHHHCCCCCC-CCCH
Q ss_conf 823000788--874899999999852473159876045787777558714567--88770421233220576346-5201
Q gi|254780401|r 49 VGGFVMGGT--GKTPTALAIAKAVIDKNLKPGFLSRGYGRKSRISFRVDLEKH--SAYDVGDEPLLLARRAVTIV-TSDR 123 (338)
Q Consensus 49 VGNitvGGt--GKTP~v~~l~~~l~~~g~~~~ilsRGYg~~~~~~~~v~~~~~--~~~~vGDEp~lla~~~pv~V-~~~R 123 (338)
||=+|.||- |=-..+..+++.....|+++.-+-.||.+-..+.+..-+..+ ....-|- ..|-..+++-.. ...+
T Consensus 4 I~IltsGGdaPGlNa~Ir~vv~~a~~~g~ev~G~~~G~~GL~~~~~~~l~~~~v~~i~~~GG-t~LgtsR~~~~~~~~~~ 82 (186)
T 3pfk_A 4 IGVLTSGGDSPGMNAAIRSVVRKAIYHGVEVYGVYHGYAGLIAGNIKKLEVGDVGDIIHRGG-TILYTARCPEFKTEEGQ 82 (186)
T ss_dssp EEEEEESSCCTTHHHHHHHHHHHHHHTTCEEEEESSHHHHHHTTCEEEECGGGGTTCTTCCS-CTTCCCCCGGGSSHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHHHHHHHCCCEEEEECCCHHHHCCCCCCCCCHHHHHHHHHCCC-CHHCCCCCCCCCCCHHH
T ss_conf 99987688768999999999999997799999984156875679951599899987986485-11045888865431015
Q ss_pred HHHHHHHCCCCCCEEEE---CCCCCCCC-CC-CEEEEEEECC
Q ss_conf 22566410245747997---18322344-12-3069999618
Q gi|254780401|r 124 KIGVQMLLQEGVDIIIM---DDGFHSAD-LQ-ADFSLIVVNS 160 (338)
Q Consensus 124 ~~~~~~~~~~~~diiIl---DDGfQh~~-l~-rdl~Ivl~d~ 160 (338)
.++++.+.+.+.|.+|. ||-++--. |+ ..+.++.+..
T Consensus 83 ~~~~~~l~~~~Id~LivIGGdgS~~~a~~L~e~gi~vigiPk 124 (186)
T 3pfk_A 83 KKGIEQLKKHGIQGLVVIGGDGSYQGAKKLTEHGFPCVGVPG 124 (186)
T ss_dssp HHHHHHHHHHTCCEEEEEECHHHHHHHHHHHHTTCCEEEEEB
T ss_pred HHHHHHHHHHCCCEEEEECCCHHHHHHHHHHHCCCCEEEEEE
T ss_conf 579999998367659994584799999998733675553111
No 223
>>2b69_A UDP-glucuronate decarboxylase 1; UDP-glucoronic acid decarboxylase, structural genomics, structural genomics consortium, SGC, lyase; HET: MSE NAD UDP; 1.21A {Homo sapiens} (A:1-198)
Probab=57.36 E-value=13 Score=17.36 Aligned_cols=31 Identities=10% Similarity=0.225 Sum_probs=24.7
Q ss_pred EECCCCCCHHHHHHHHHHHHCCCCEEEEEECCC
Q ss_conf 007888748999999998524731598760457
Q gi|254780401|r 53 VMGGTGKTPTALAIAKAVIDKNLKPGFLSRGYG 85 (338)
Q Consensus 53 tvGGtGKTP~v~~l~~~l~~~g~~~~ilsRGYg 85 (338)
.+|||| -+=.+|++.|.++|+.+.++.|-..
T Consensus 32 VtGgtG--fIG~~lv~~L~~~g~~V~~~~~~~~ 62 (198)
T 2b69_A 32 ITGGAG--FVGSHLTDKLXXDGHEVTVVDNFFT 62 (198)
T ss_dssp EETTTS--HHHHHHHHHHHHTTCEEEEEECCSS
T ss_pred EECCCC--HHHHHHHHHHHHCCCEEEEEECCCC
T ss_conf 978972--8999999999978698999968876
No 224
>>3h4m_A Proteasome-activating nucleotidase; ATPase, PAN, ATP-binding, cytoplasm, nucleotide- binding, hydrolase; HET: ADP; 3.11A {Methanocaldococcus jannaschii} (A:1-187)
Probab=57.26 E-value=5.6 Score=20.04 Aligned_cols=24 Identities=33% Similarity=0.140 Sum_probs=17.9
Q ss_pred CCCCCCHHHHHHHHHHHHCCCCEEEEE
Q ss_conf 788874899999999852473159876
Q gi|254780401|r 55 GGTGKTPTALAIAKAVIDKNLKPGFLS 81 (338)
Q Consensus 55 GGtGKTP~v~~l~~~l~~~g~~~~ils 81 (338)
.|||||-++.++|+.+. .....++
T Consensus 60 pGtGKT~~a~ala~~~~---~~~~~~~ 83 (187)
T 3h4m_A 60 PGTGKTLLAKAVATETN---ATFIRVV 83 (187)
T ss_dssp SSSSHHHHHHHHHHHTT---CEEEEEE
T ss_pred CCCCHHHHHHHHHHHHC---CCEEEEE
T ss_conf 99980199999999829---9779998
No 225
>>1d2n_A N-ethylmaleimide-sensitive fusion protein; hexamerization domain, ATPase, transport; HET: ANP; 1.75A {Cricetulus griseus} (A:1-196)
Probab=57.25 E-value=5.1 Score=20.29 Aligned_cols=29 Identities=28% Similarity=0.190 Sum_probs=22.0
Q ss_pred CCCCEEEECCEEECCCCCCHHHHHHHHHHHHC
Q ss_conf 88988998230007888748999999998524
Q gi|254780401|r 42 APIPVICVGGFVMGGTGKTPTALAIAKAVIDK 73 (338)
Q Consensus 42 ~~~pVI~VGNitvGGtGKTP~v~~l~~~l~~~ 73 (338)
.+..++-.|.- |||||=++.++|+.+...
T Consensus 63 ~~~~iLl~Gpp---GtGKT~la~aia~~l~~~ 91 (196)
T 1d2n_A 63 PLVSVLLEGPP---HSGKTALAAKIAEESNFP 91 (196)
T ss_dssp SEEEEEEECST---TSSHHHHHHHHHHHHTCS
T ss_pred CCCEEEEECCC---CCCHHHHHHHHHHHCCCC
T ss_conf 98269988949---998899999998743677
No 226
>>2bll_A Protein YFBG; decarboxylase, short chain dehydrogenase, L-ARA4N biosynthesis, methyltransferase, transferase; 2.3A {Escherichia coli} (A:)
Probab=56.55 E-value=14 Score=17.27 Aligned_cols=33 Identities=6% Similarity=0.047 Sum_probs=27.5
Q ss_pred EEECCCCCCHHHHHHHHHHHHCCCCEEEEEECCCC
Q ss_conf 00078887489999999985247315987604578
Q gi|254780401|r 52 FVMGGTGKTPTALAIAKAVIDKNLKPGFLSRGYGR 86 (338)
Q Consensus 52 itvGGtGKTP~v~~l~~~l~~~g~~~~ilsRGYg~ 86 (338)
+.+|||| -+=.+|++.|.++|+.+.++.|.-..
T Consensus 4 LVtGatG--fiG~~lv~~Ll~~g~~v~~~~r~~~~ 36 (345)
T 2bll_A 4 LILGVNG--FIGNHLTERLLREDHYEVYGLDIGSD 36 (345)
T ss_dssp EEETCSS--HHHHHHHHHHHHSTTCEEEEEESCCG
T ss_pred EEECCCC--HHHHHHHHHHHHCCCCEEEEEECCCC
T ss_conf 9989886--89999999999779988999968972
No 227
>>1iy2_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 3.20A {Thermus thermophilus} (A:1-210)
Probab=56.55 E-value=4.6 Score=20.62 Aligned_cols=34 Identities=35% Similarity=0.271 Sum_probs=22.9
Q ss_pred CCCCEEEECCEEECCCCCCHHHHHHHHHHHHCCCCEEEEE
Q ss_conf 8898899823000788874899999999852473159876
Q gi|254780401|r 42 APIPVICVGGFVMGGTGKTPTALAIAKAVIDKNLKPGFLS 81 (338)
Q Consensus 42 ~~~pVI~VGNitvGGtGKTP~v~~l~~~l~~~g~~~~ils 81 (338)
.+.-++--|- -|||||-++.++|+.+. .....++
T Consensus 72 ~~~giLL~Gp---pGtGKT~la~a~A~~~~---~~~~~~~ 105 (210)
T 1iy2_A 72 IPKGVLLVGP---PGVGKTHLARAVAGEAR---VPFITAS 105 (210)
T ss_dssp CCCEEEEECC---TTSSHHHHHHHHHHHTT---CCEEEEE
T ss_pred CCCCEEEECC---CCCCCHHHHHHHHHHCC---CCEEEEE
T ss_conf 9980377579---99983389999998749---9769988
No 228
>>3h2s_A Putative NADH-flavin reductase; Q03B84, NESG, LCR19, structural genomics, PSI-2, protein structure initiative; HET: NDP; 1.78A {Lactobacillus casei atcc 334} (A:)
Probab=56.53 E-value=14 Score=17.27 Aligned_cols=32 Identities=22% Similarity=0.217 Sum_probs=26.5
Q ss_pred EEECCCCCCHHHHHHHHHHHHCCCCEEEEEECCC
Q ss_conf 0007888748999999998524731598760457
Q gi|254780401|r 52 FVMGGTGKTPTALAIAKAVIDKNLKPGFLSRGYG 85 (338)
Q Consensus 52 itvGGtGKTP~v~~l~~~l~~~g~~~~ilsRGYg 85 (338)
+.+||||.. =.+|++.|.++|+.+.+++|.-.
T Consensus 4 lItGatG~i--G~~l~~~L~~~g~~V~~~~r~~~ 35 (224)
T 3h2s_A 4 AVLGATGRA--GSAIVAEARRRGHEVLAVVRDPQ 35 (224)
T ss_dssp EEETTTSHH--HHHHHHHHHHTTCEEEEEESCHH
T ss_pred EEECCCCHH--HHHHHHHHHHCCCEEEEEECCHH
T ss_conf 999988579--99999999978698999988857
No 229
>>3gpi_A NAD-dependent epimerase/dehydratase; structural genomics, unknown function, PSI-2, protein structure initiative; 1.44A {Methylobacillus flagellatus KT} (A:)
Probab=56.52 E-value=14 Score=17.27 Aligned_cols=38 Identities=16% Similarity=0.177 Sum_probs=30.5
Q ss_pred EEECCCCCCHHHHHHHHHHHHCCCCEEEEEECCCCCCCCC
Q ss_conf 0007888748999999998524731598760457877775
Q gi|254780401|r 52 FVMGGTGKTPTALAIAKAVIDKNLKPGFLSRGYGRKSRIS 91 (338)
Q Consensus 52 itvGGtGKTP~v~~l~~~l~~~g~~~~ilsRGYg~~~~~~ 91 (338)
|.+|||| -+=-+|++.|.++|+.|..+.|.-.......
T Consensus 6 LItGatG--fiG~~l~~~L~~~g~~V~~~~r~~~~~~~~~ 43 (286)
T 3gpi_A 6 ILIAGCG--DLGLELARRLTAQGHEVTGLRRSAQPMPAGV 43 (286)
T ss_dssp EEEECCS--HHHHHHHHHHHHTTCCEEEEECTTSCCCTTC
T ss_pred EEEECCC--HHHHHHHHHHHHCCCEEEEEECCHHHCCCCC
T ss_conf 9998921--9999999999978598999978712260678
No 230
>>2c9o_A RUVB-like 1; hexameric helicase, AAA+-ATPase, ATP-binding, chromatin regulator, growth regulation, hydrolase, nuclear protein, DNA recombination; HET: ADP; 2.2A {Homo sapiens} (A:1-365)
Probab=56.50 E-value=14 Score=17.26 Aligned_cols=37 Identities=41% Similarity=0.403 Sum_probs=25.7
Q ss_pred CCCCCCCEEEECCEEECCCCCCHHHHHHHHHHHHCCCCEEEEE
Q ss_conf 4338898899823000788874899999999852473159876
Q gi|254780401|r 39 RLHAPIPVICVGGFVMGGTGKTPTALAIAKAVIDKNLKPGFLS 81 (338)
Q Consensus 39 ~~~~~~pVI~VGNitvGGtGKTP~v~~l~~~l~~~g~~~~ils 81 (338)
+..++--++-.|-= |||||-++..||+.|.. ...+++
T Consensus 59 ~~~~~~~iLl~GPp---GtGKT~la~alA~~l~~---~~~~~~ 95 (365)
T 2c9o_A 59 KKMAGRAVLLAGPP---GTGKTALALAIAQELGS---KVPFCP 95 (365)
T ss_dssp TCCTTCEEEEECCT---TSSHHHHHHHHHHHHCT---TSCEEE
T ss_pred CCCCCCEEEEECCC---CCCHHHHHHHHHHHHCC---CCCCCC
T ss_conf 98668779998999---98899999999998489---999767
No 231
>>3cr8_A Sulfate adenylyltranferase, adenylylsulfate kinase; APS kinase, transferase, sulfate metabolism, nucleotide 2 kinase; 2.95A {Thiobacillus denitrificans} (A:365-552)
Probab=56.26 E-value=5.8 Score=19.94 Aligned_cols=37 Identities=27% Similarity=0.257 Sum_probs=28.4
Q ss_pred CEEEECCEEECCCCCCHHHHHHHHHHHHCCCCEEEEEECC
Q ss_conf 8899823000788874899999999852473159876045
Q gi|254780401|r 45 PVICVGGFVMGGTGKTPTALAIAKAVIDKNLKPGFLSRGY 84 (338)
Q Consensus 45 pVI~VGNitvGGtGKTP~v~~l~~~l~~~g~~~~ilsRGY 84 (338)
-|+..|.. |+|||-++..|++.|....+......+..
T Consensus 7 ~I~i~G~~---GsGKTTla~~La~~l~~~~~~~~~~~~~~ 43 (188)
T 3cr8_A 7 TVFFTGLS---GAGKSTLARALAARLMEMGGRCVTLLDGD 43 (188)
T ss_dssp EEEEEESS---CHHHHHHHHHHHHHHHTTCSSCEEEESSH
T ss_pred EEEEECCC---CCCHHHHHHHHHHHHHHCCCCEEEEECHH
T ss_conf 99997888---88772899999999712468727984346
No 232
>>2zxe_A Na, K-ATPase alpha subunit; membrane protein, ION pump, ATPase, K+ binding, haloacid dehydrogenease superfamily, phosphate analogue; HET: CLR NAG NDG; 2.40A {Squalus acanthias} PDB: 3a3y_A* 3b8e_A* 1mo7_A 1mo8_A* 1q3i_A (A:360-386,A:602-759)
Probab=56.20 E-value=14 Score=17.23 Aligned_cols=27 Identities=11% Similarity=0.074 Sum_probs=19.5
Q ss_pred CCCCCCHHHHHHHHHHHHCCCCEEEEE
Q ss_conf 788874899999999852473159876
Q gi|254780401|r 55 GGTGKTPTALAIAKAVIDKNLKPGFLS 81 (338)
Q Consensus 55 GGtGKTP~v~~l~~~l~~~g~~~~ils 81 (338)
.-||--+-|-.-.+.+++.|.++.++|
T Consensus 22 ~~~~~~t~v~~~I~~l~~~GI~~~m~T 48 (185)
T 2zxe_A 22 DKTGTLAAVPDAVGKCRSAGIKVIMVT 48 (185)
T ss_dssp CCCCCCTTHHHHHHHHHHTTCEEEEEC
T ss_pred CCCCCCHHHHHHHHHHHHCCCEEEEEC
T ss_conf 054202679999999997797799986
No 233
>>2q6t_A DNAB replication FORK helicase; hydrolase; 2.90A {Thermus aquaticus} (A:179-444)
Probab=56.15 E-value=11 Score=17.99 Aligned_cols=28 Identities=36% Similarity=0.439 Sum_probs=22.0
Q ss_pred CCCCCCHHHHHHH-HHHHHCCCCEEEEEE
Q ss_conf 7888748999999-998524731598760
Q gi|254780401|r 55 GGTGKTPTALAIA-KAVIDKNLKPGFLSR 82 (338)
Q Consensus 55 GGtGKTP~v~~l~-~~l~~~g~~~~ilsR 82 (338)
=|+|||-++.-++ ......|..+..+|-
T Consensus 31 ~G~GKTt~~~q~~~~~~~~~g~~vl~~~~ 59 (266)
T 2q6t_A 31 PAMGKTAFALTIAQNAALKEGVGVGIYSL 59 (266)
T ss_dssp TTSCHHHHHHHHHHHHHHTTCCCEEEEES
T ss_pred CCCCCCHHHHHHHHHHHHHCCCCEEEEEC
T ss_conf 55322079999898898736994799715
No 234
>>3d8b_A Fidgetin-like protein 1; AAA+, ATPase, ADP, SGC, structural genomics consortium, alternative splicing, ATP-binding, hydrolase, magnesium; HET: ADP; 2.00A {Homo sapiens} (A:1-250,A:340-357)
Probab=56.02 E-value=4.5 Score=20.68 Aligned_cols=27 Identities=33% Similarity=0.341 Sum_probs=16.9
Q ss_pred CCCEEEECCEEECCCCCCHHHHHHHHHHHH
Q ss_conf 898899823000788874899999999852
Q gi|254780401|r 43 PIPVICVGGFVMGGTGKTPTALAIAKAVID 72 (338)
Q Consensus 43 ~~pVI~VGNitvGGtGKTP~v~~l~~~l~~ 72 (338)
+-.++..|-- |||||=++.++|+.+..
T Consensus 117 ~~~iLL~GPP---GtGKT~la~alA~~l~~ 143 (268)
T 3d8b_A 117 PKGILLFGPP---GTGKTLIGKCIASQSGA 143 (268)
T ss_dssp CSEEEEESST---TSSHHHHHHHHHHHTTC
T ss_pred CCEEEEECCC---CCCHHHHHHHHHCCCCC
T ss_conf 8756887899---99866999998523389
No 235
>>3iru_A Phoshonoacetaldehyde hydolase like protein; phosphonoacetaldehyde hydrolase like protein, structural genomics, PSI-2; 2.30A {Oleispira antarctica} (A:1-26,A:113-258)
Probab=55.86 E-value=14 Score=17.19 Aligned_cols=42 Identities=21% Similarity=0.214 Sum_probs=32.7
Q ss_pred CCCEEEECC-----EEECCCCCCHHHHHHHHHHHHCCCCEEEEEECC
Q ss_conf 898899823-----000788874899999999852473159876045
Q gi|254780401|r 43 PIPVICVGG-----FVMGGTGKTPTALAIAKAVIDKNLKPGFLSRGY 84 (338)
Q Consensus 43 ~~pVI~VGN-----itvGGtGKTP~v~~l~~~l~~~g~~~~ilsRGY 84 (338)
+..|.|-|- +-..||---|=+..+.+.|+++|++++|+|.+-
T Consensus 5 ~~~~~~~~~~~~~~~~~~~~~~~PGv~e~L~~L~~~G~~v~ivTn~~ 51 (172)
T 3iru_A 5 KANVFCAGPVEALILDWAGTTIIPGWKEVFDKLIAQGIKVGGNTGYG 51 (172)
T ss_dssp CCCCCCCCCCCEEEEESBTTTBCTTHHHHHHHHHHTTCEEEEECSSC
T ss_pred CCCCCCCCCCEEEEECCCCCCCCCCHHHHHHHHHHCCCEEEEEECCC
T ss_conf 45776679862999828897675757999999985236089980785
No 236
>>2q1w_A Putative nucleotide sugar epimerase/ dehydratase; rossman fold, protein-NAD complex, sugar binding protein; HET: NAD; 2.19A {Bordetella bronchiseptica} (A:)
Probab=55.71 E-value=14 Score=17.18 Aligned_cols=33 Identities=18% Similarity=0.146 Sum_probs=26.4
Q ss_pred EEECCCCCCHHHHHHHHHHHHCCCCEEEEEECCCC
Q ss_conf 00078887489999999985247315987604578
Q gi|254780401|r 52 FVMGGTGKTPTALAIAKAVIDKNLKPGFLSRGYGR 86 (338)
Q Consensus 52 itvGGtGKTP~v~~l~~~l~~~g~~~~ilsRGYg~ 86 (338)
+.+|||| -+=.+|++.|.++|+++.++.|.-..
T Consensus 25 lItGatG--~iG~~l~~~L~~~g~~v~~~~r~~~~ 57 (333)
T 2q1w_A 25 FITGICG--QIGSHIAELLLERGDKVVGIDNFATG 57 (333)
T ss_dssp EEETTTS--HHHHHHHHHHHHTTCEEEEEECCSSC
T ss_pred EEECCCC--HHHHHHHHHHHHCCCEEEEEECCCCC
T ss_conf 9927888--89999999999782989999799855
No 237
>>1qgu_B Protein (nitrogenase molybdenum iron protein); biological nitrogen fixation, nitrogen metabolism, molybdoenzymes, electron transfer; HET: HCA CFM CLF; 1.60A {Klebsiella pneumoniae} (B:32-62,B:311-519)
Probab=55.68 E-value=13 Score=17.42 Aligned_cols=34 Identities=21% Similarity=0.103 Sum_probs=20.0
Q ss_pred CCCCEEEEEECCCCHHHHHHHHHHHCCCCCCCCC
Q ss_conf 1686389874155357899988740100001221
Q gi|254780401|r 220 LSGKKVLAFSGIADTEKFFTTVRQLGALIEQCYS 253 (338)
Q Consensus 220 l~~k~v~afsGIa~P~~F~~~L~~~g~~i~~~~~ 253 (338)
+.|+++.++.+-...-.+-+.|+++|..++....
T Consensus 79 L~Gkrv~I~g~~~~~~~l~~~L~ElGm~vv~~~~ 112 (240)
T 1qgu_B 79 LHGKKFGLYGDPDFVMGLTRFLLELGCEPTVILS 112 (240)
T ss_dssp HTTCEEEEESCHHHHHHHHHHHHHTTCEEEEEEE
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHCCCEEEEEEE
T ss_conf 0797799989828899999999987995569863
No 238
>>2p5t_B PEZT; postsegregational killing system, phosphoryltransferase, helix-turn-helix motif, transcription regulator; 3.20A {Streptococcus pneumoniae} (B:)
Probab=55.51 E-value=6.1 Score=19.78 Aligned_cols=34 Identities=24% Similarity=0.319 Sum_probs=23.0
Q ss_pred CCCCEEEECCEEECCCCCCHHHHHHHHHHHHCCCCEEEEE
Q ss_conf 8898899823000788874899999999852473159876
Q gi|254780401|r 42 APIPVICVGGFVMGGTGKTPTALAIAKAVIDKNLKPGFLS 81 (338)
Q Consensus 42 ~~~pVI~VGNitvGGtGKTP~v~~l~~~l~~~g~~~~ils 81 (338)
.|.-|+-.|- =|||||=++.++|..+.. ....++
T Consensus 31 ~p~giLl~Gp---pGtGKT~la~ala~e~~~---~~~~i~ 64 (253)
T 2p5t_B 31 QPIAILLGGQ---SGAGKTTIHRIKQKEFQG---NIVIID 64 (253)
T ss_dssp SCEEEEEESC---GGGTTHHHHHHHHHHTTT---CCEEEC
T ss_pred CCEEEEEECC---CCCCHHHHHHHHHHHHCC---CEEEEE
T ss_conf 9879999899---998999999999876467---639998
No 239
>>3gi1_A LBP, laminin-binding protein of group A streptococci; zinc-binding receptor, metal-binding, helical backbone, alpha/beta domains; 2.45A {Streptococcus pyogenes} PDB: 3hjt_A (A:178-286)
Probab=55.49 E-value=14 Score=17.15 Aligned_cols=94 Identities=7% Similarity=0.025 Sum_probs=55.4
Q ss_pred HHHHHHHHHHCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCEEEECHH-HHHHCCCCCCCCHHHHCCEEEEEE-EEEE
Q ss_conf 78999887401000012214332348989999999975647987998546-634382333441112205178876-9895
Q gi|254780401|r 235 EKFFTTVRQLGALIEQCYSFGDHAHLSDKKIAYLLDQAQQKGLILVTTAK-DAMRLHKRPGRAEEIFAKSMVIEV-DIVF 312 (338)
Q Consensus 235 ~~F~~~L~~~g~~i~~~~~fpDHh~ys~~dl~~i~~~a~~~~~~iiTTEK-D~VKL~~~~~~~~~l~~~~~~l~i-~~~~ 312 (338)
..|-...+.+|++....+....+..-|.+++.++.+..++++...|-+|- ---|.-+. ...+....+.+++. .-..
T Consensus 10 ~af~Yl~~~ygl~~~~~~~~~~~~~ps~~~i~~l~~~ik~~~i~~i~~e~~~~~~~~~~--ia~~~~~~~~~l~~l~~~~ 87 (109)
T 3gi1_A 10 TAFSYLAKRFGLKQLGISGISPEQEPSPRQLKEIQDFVKEYNVKTIFAEDNVNPKIAHA--IAKSTGAKVKTLSPLEAAP 87 (109)
T ss_dssp SCCHHHHHHTTCEEEEEECSCC---CCHHHHHHHHHHHHHTTCCEEEECTTSCTHHHHH--HHHTTTCEEEECCCSCSCC
T ss_pred CHHHHHHHHCCCEEEECCCCCCCCCCCHHHHHHHHHHHHHCCCCEEEEECCCCHHHHHH--HHHHHCCCEEEECCCCCCC
T ss_conf 05678999769827632566876789989999999999975998899958899399999--9998299878747776788
Q ss_pred CCHHHHHHHHHHHHHHHH
Q ss_conf 787899999999999986
Q gi|254780401|r 313 ENPDDLTNLVEMTVVSFA 330 (338)
Q Consensus 313 ~~~~~l~~~l~~~i~~~~ 330 (338)
.+.....+++++.+..+.
T Consensus 88 ~~~~~Y~~~m~~n~~~l~ 105 (109)
T 3gi1_A 88 SGNKTYLENLRANLEVLY 105 (109)
T ss_dssp SSSCCHHHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHH
T ss_conf 886659999999999999
No 240
>>1pjr_A PCRA; DNA repair, DNA replication, SOS response, helicase, ATP- binding, DNA-binding; 2.50A {Geobacillus stearothermophilus} (A:1-107,A:194-286)
Probab=54.86 E-value=12 Score=17.69 Aligned_cols=28 Identities=14% Similarity=0.103 Sum_probs=18.9
Q ss_pred ECCCCCCHHHHHHHHHHHHCC----CCEEEEE
Q ss_conf 078887489999999985247----3159876
Q gi|254780401|r 54 MGGTGKTPTALAIAKAVIDKN----LKPGFLS 81 (338)
Q Consensus 54 vGGtGKTP~v~~l~~~l~~~g----~~~~ils 81 (338)
..|||||=+....+..+...+ .++.+++
T Consensus 32 ~tGsGKT~~~~~~i~~~l~~~~~~~~~il~i~ 63 (200)
T 1pjr_A 32 GAGSGKTRVLTHRIAYLMAEKHVAPWNILAIT 63 (200)
T ss_dssp CTTSCHHHHHHHHHHHHHHTTCCCGGGEEEEE
T ss_pred ECCHHHHHHHHHHHHHHHHCCCCCCCCEEEEE
T ss_conf 38427999999999999980998942299993
No 241
>>3dqp_A Oxidoreductase YLBE; alpha-beta protein., structural genomics, PSI-2, protein structure initiative; 1.40A {Lactococcus lactis subsp} (A:)
Probab=54.82 E-value=15 Score=17.08 Aligned_cols=35 Identities=17% Similarity=0.282 Sum_probs=28.7
Q ss_pred EEECCCCCCHHHHHHHHHHHHCCCCEEEEEECCCCCC
Q ss_conf 0007888748999999998524731598760457877
Q gi|254780401|r 52 FVMGGTGKTPTALAIAKAVIDKNLKPGFLSRGYGRKS 88 (338)
Q Consensus 52 itvGGtGKTP~v~~l~~~l~~~g~~~~ilsRGYg~~~ 88 (338)
+.+||||. +=.+|++.|.++|+++.+++|.-....
T Consensus 4 lItGatG~--iG~~lv~~L~~~g~~v~~~~r~~~~~~ 38 (219)
T 3dqp_A 4 FIVGSTGR--VGKSLLKSLSTTDYQIYAGARKVEQVP 38 (219)
T ss_dssp EEESTTSH--HHHHHHHHHTTSSCEEEEEESSGGGSC
T ss_pred EEECCCCH--HHHHHHHHHHHCCCEEEEEECCHHHHH
T ss_conf 99999988--999999999978398999989878804
No 242
>>2bka_A CC3, TAT-interacting protein TIP30; NADPH, PEG600, transcription; HET: NDP PE8; 1.7A {Homo sapiens} (A:)
Probab=54.63 E-value=13 Score=17.32 Aligned_cols=33 Identities=21% Similarity=0.469 Sum_probs=26.6
Q ss_pred EEECCCCCCHHHHHHHHHHHHCCCCEEEEEECCCC
Q ss_conf 00078887489999999985247315987604578
Q gi|254780401|r 52 FVMGGTGKTPTALAIAKAVIDKNLKPGFLSRGYGR 86 (338)
Q Consensus 52 itvGGtGKTP~v~~l~~~l~~~g~~~~ilsRGYg~ 86 (338)
+.+||||.. =..|++.|.++|+.+.+++|....
T Consensus 22 lItGatG~i--G~~l~~~l~~~g~~v~~~~r~~~~ 54 (242)
T 2bka_A 22 FILGASGET--GRVLLKEILEQGLFSKVTLIGRRK 54 (242)
T ss_dssp EEECTTSHH--HHHHHHHHHHHTCCSEEEEEESSC
T ss_pred EEECCCCHH--HHHHHHHHHHCCCCCEEEEEECCH
T ss_conf 998998689--999999999779972699853673
No 243
>>2z83_A Helicase/nucleoside triphosphatase; hydrolase, membrane, nucleotide-binding, RNA replication, transmembrane, viral protein; 1.80A {Japanese encephalitis virus} PDB: 2v8o_A 2qeq_A (A:1-159,A:317-397)
Probab=54.39 E-value=11 Score=17.83 Aligned_cols=27 Identities=33% Similarity=0.496 Sum_probs=21.6
Q ss_pred CCCCCCHHH-HHHHHHHHHCCCCEEEEE
Q ss_conf 788874899-999999852473159876
Q gi|254780401|r 55 GGTGKTPTA-LAIAKAVIDKNLKPGFLS 81 (338)
Q Consensus 55 GGtGKTP~v-~~l~~~l~~~g~~~~ils 81 (338)
=|+|||=.+ ..+++.+...+.++.|+.
T Consensus 30 TGsGKT~~~l~~i~~~~~~~~~rvLiLa 57 (240)
T 2z83_A 30 PGSGKTRKILPQIIKDAIQQRLRTAVLA 57 (240)
T ss_dssp TTSCTTTTHHHHHHHHHHHTTCCEEEEE
T ss_pred CCCCHHHHHHHHHHHHHHHCCCEEEEEH
T ss_conf 9985889999999998772798399986
No 244
>>1u2p_A Ptpase, low molecular weight protein-tyrosine- phosphatase; hydrolase; 1.90A {Mycobacterium tuberculosis} PDB: 1u2q_A (A:)
Probab=54.34 E-value=8.5 Score=18.73 Aligned_cols=40 Identities=18% Similarity=0.339 Sum_probs=30.0
Q ss_pred CCCCEEEECCEEECCCCCCHHHHHHHHHHHH-C--CCCEEEEEECCCC
Q ss_conf 8898899823000788874899999999852-4--7315987604578
Q gi|254780401|r 42 APIPVICVGGFVMGGTGKTPTALAIAKAVID-K--NLKPGFLSRGYGR 86 (338)
Q Consensus 42 ~~~pVI~VGNitvGGtGKTP~v~~l~~~l~~-~--g~~~~ilsRGYg~ 86 (338)
..|-.||.||+ +.+|++.++.+.+.+ + +-++-|-|.|=..
T Consensus 5 ~~ILFVC~gN~-----cRS~mAEal~~~~~~~~~l~~~~~v~SAG~~~ 47 (163)
T 1u2p_A 5 LHVTFVCTGNI-----CRSPMAEKMFAQQLRHRGLGDAVRVTSAGTGN 47 (163)
T ss_dssp EEEEEEESSSS-----SHHHHHHHHHHHHHHHTTCTTTEEEEEEESSC
T ss_pred CEEEEECCCCH-----HHHHHHHHHHHHHHHHCCCCCEEEEECCCCCC
T ss_conf 87999818848-----79999999999999866888707884377666
No 245
>>1um8_A ATP-dependent CLP protease ATP-binding subunit CLPX; CLPP binding loop, chaperone; HET: ADP; 2.60A {Helicobacter pylori 26695} (A:1-272)
Probab=54.25 E-value=5.3 Score=20.19 Aligned_cols=37 Identities=22% Similarity=0.240 Sum_probs=24.0
Q ss_pred CCCCCCCEEEECCEEECCCCCCHHHHHHHHHHHHCCCCEEEEE
Q ss_conf 4338898899823000788874899999999852473159876
Q gi|254780401|r 39 RLHAPIPVICVGGFVMGGTGKTPTALAIAKAVIDKNLKPGFLS 81 (338)
Q Consensus 39 ~~~~~~pVI~VGNitvGGtGKTP~v~~l~~~l~~~g~~~~ils 81 (338)
..++|--++-.|= =|||||=++.+||+.+. .....++
T Consensus 68 ~~~~~~giLL~GP---PGtGKT~lakalA~~~~---~~~~~~~ 104 (272)
T 1um8_A 68 VELSKSNILLIGP---TGSGKTLMAQTLAKHLD---IPIAISD 104 (272)
T ss_dssp TTCCCCCEEEECC---TTSSHHHHHHHHHHHTT---CCEEEEE
T ss_pred CCCCCCCEEEECC---CCCCHHHHHHHHHHHCC---CCEEEEE
T ss_conf 5678754365389---98757999999985254---7755520
No 246
>>2gno_A DNA polymerase III, gamma subunit-related protein; TM0771, structural genomics, PSI, protein structure initiative; HET: DNA; 2.00A {Thermotoga maritima MSB8} (A:1-140)
Probab=54.13 E-value=5.8 Score=19.92 Aligned_cols=22 Identities=14% Similarity=-0.043 Sum_probs=17.9
Q ss_pred CCCCCCHHHHHHHHHHHHCCCC
Q ss_conf 7888748999999998524731
Q gi|254780401|r 55 GGTGKTPTALAIAKAVIDKNLK 76 (338)
Q Consensus 55 GGtGKTP~v~~l~~~l~~~g~~ 76 (338)
-|||||-++.++|+.+......
T Consensus 27 pG~GKT~la~~ia~~~~~~~~~ 48 (140)
T 2gno_A 27 DLSYPREVSLELPEYVEKFPPK 48 (140)
T ss_dssp SSSHHHHHHHHHHHHHHTSCCC
T ss_pred CCCCHHHHHHHHHHHHHCCCCC
T ss_conf 9988799999999987344677
No 247
>>1f6b_A SAR1; gtpases, N-terminal helix, Mg-containing complex, protein transport; HET: GDP; 1.70A {Cricetulus griseus} (A:)
Probab=54.05 E-value=5.9 Score=19.85 Aligned_cols=27 Identities=15% Similarity=0.137 Sum_probs=18.7
Q ss_pred CCCCCCCCEEEECCEEECCCCCCHHHHHHH
Q ss_conf 643388988998230007888748999999
Q gi|254780401|r 38 QRLHAPIPVICVGGFVMGGTGKTPTALAIA 67 (338)
Q Consensus 38 ~~~~~~~pVI~VGNitvGGtGKTP~v~~l~ 67 (338)
...+.++.|+.||+ +|+|||-++..+.
T Consensus 20 ~~~~~~~Ki~ivG~---~~vGKTsli~rl~ 46 (198)
T 1f6b_A 20 GLYKKTGKLVFLGL---DNAGKTTLLHMLK 46 (198)
T ss_dssp TCTTCCEEEEEEEE---TTSSHHHHHHHHS
T ss_pred CCCCCCCEEEEECC---CCCCHHHHHHHHH
T ss_conf 15666647999999---9998899999995
No 248
>>1x6v_B Bifunctional 3'-phosphoadenosine 5'- phosphosulfate synthethase 1; transferase, ATP sulfurylase, APS kinase, PAPS; HET: ADP; 1.75A {Homo sapiens} (B:1-233)
Probab=54.04 E-value=9.3 Score=18.47 Aligned_cols=38 Identities=24% Similarity=0.223 Sum_probs=30.3
Q ss_pred EEEECCEEECCCCCCHHHHHHHHHHHHCCCCEEEEEECCCC
Q ss_conf 89982300078887489999999985247315987604578
Q gi|254780401|r 46 VICVGGFVMGGTGKTPTALAIAKAVIDKNLKPGFLSRGYGR 86 (338)
Q Consensus 46 VI~VGNitvGGtGKTP~v~~l~~~l~~~g~~~~ilsRGYg~ 86 (338)
|+.+|-- |+|||-++..|++.|.-..+....+.+...+
T Consensus 55 I~i~G~~---GsGKTTia~~La~~l~~~~i~~d~~~~~~~~ 92 (233)
T 1x6v_B 55 VWLTGLS---GAGKTTVSMALEEYLVCHGIPCYTLDGDNIR 92 (233)
T ss_dssp EEEECST---TSSHHHHHHHHHHHHHHTTCCEEEESHHHHT
T ss_pred EEEECCC---CCCHHHHHHHHHHHHCCCCCCCCCCCHHHHH
T ss_conf 9998999---9989999999999966036897102589999
No 249
>>1hdo_A Biliverdin IX beta reductase; foetal metabolism, HAEM degradation, flavin reductase, diaphorase, green HAEM binding protein; HET: NAP; 1.15A {Homo sapiens} (A:)
Probab=53.84 E-value=15 Score=16.97 Aligned_cols=33 Identities=24% Similarity=0.376 Sum_probs=27.3
Q ss_pred EEECCCCCCHHHHHHHHHHHHCCCCEEEEEECCCC
Q ss_conf 00078887489999999985247315987604578
Q gi|254780401|r 52 FVMGGTGKTPTALAIAKAVIDKNLKPGFLSRGYGR 86 (338)
Q Consensus 52 itvGGtGKTP~v~~l~~~l~~~g~~~~ilsRGYg~ 86 (338)
+.+|||| -+=..|++.|.++|+.+.+++|.-..
T Consensus 7 lItGatG--~iG~~l~~~L~~~g~~v~~~~r~~~~ 39 (206)
T 1hdo_A 7 AIFGATG--QTGLTTLAQAVQAGYEVTVLVRDSSR 39 (206)
T ss_dssp EEESTTS--HHHHHHHHHHHHTTCEEEEEESCGGG
T ss_pred EEECCCC--HHHHHHHHHHHHCCCEEEEEECCHHH
T ss_conf 9999998--89999999999786989999848254
No 250
>>3eie_A Vacuolar protein sorting-associated protein 4; AAA ATPase, ATP-binding cassette, ATP-binding, endosome, membrane, nucleotide-binding; 2.70A {Saccharomyces cerevisiae} PDB: 3eih_A* 2rko_A (A:1-183,A:302-322)
Probab=53.58 E-value=6.1 Score=19.79 Aligned_cols=26 Identities=31% Similarity=0.299 Sum_probs=20.4
Q ss_pred CCEEEECCEEECCCCCCHHHHHHHHHHHH
Q ss_conf 98899823000788874899999999852
Q gi|254780401|r 44 IPVICVGGFVMGGTGKTPTALAIAKAVID 72 (338)
Q Consensus 44 ~pVI~VGNitvGGtGKTP~v~~l~~~l~~ 72 (338)
--++-.|-- |||||-++.++|+.+..
T Consensus 52 ~giLl~GPp---GtGKT~lakaiA~~l~~ 77 (204)
T 3eie_A 52 SGILLYGPP---GTGKSYLAKAVATEANS 77 (204)
T ss_dssp CEEEEECSS---SSCHHHHHHHHHHHHTC
T ss_pred CCEEEECCC---CCCHHHHHHHHHHHCCC
T ss_conf 805887999---99802898988876289
No 251
>>1iqp_A RFCS; clamp loader, extended AAA-ATPase domain, complex with ADP, replication; HET: ADP; 2.80A {Pyrococcus furiosus} (A:1-168)
Probab=53.51 E-value=6.9 Score=19.40 Aligned_cols=30 Identities=33% Similarity=0.571 Sum_probs=21.5
Q ss_pred CEEEECCEEECCCCCCHHHHHHHHHHHHCCCCE
Q ss_conf 889982300078887489999999985247315
Q gi|254780401|r 45 PVICVGGFVMGGTGKTPTALAIAKAVIDKNLKP 77 (338)
Q Consensus 45 pVI~VGNitvGGtGKTP~v~~l~~~l~~~g~~~ 77 (338)
+++..|. -|||||.++..+++.+.......
T Consensus 48 ~~Ll~Gp---pG~GKT~~a~~ia~~~~~~~~~~ 77 (168)
T 1iqp_A 48 HLLFAGP---PGVGKTTAALALARELFGENWRH 77 (168)
T ss_dssp EEEEESC---TTSSHHHHHHHHHHHHHGGGHHH
T ss_pred EEEEECC---CCCCHHHHHHHHHHHHHHCCCCC
T ss_conf 7988897---99999999999999976402477
No 252
>>2gn4_A FLAA1 protein, UDP-GLCNAC C6 dehydratase; rossmann fold, TYK triad, SDR, enzyme, NADP, NADPH, lyase; HET: NDP UD1 MES; 1.90A {Helicobacter pylori} PDB: 2gn6_A* 2gn8_A* 2gn9_A* 2gna_A* (A:)
Probab=53.32 E-value=15 Score=16.92 Aligned_cols=32 Identities=19% Similarity=0.349 Sum_probs=26.2
Q ss_pred EEECCCCCCHHHHHHHHHHHHCCCCEEEEEECCC
Q ss_conf 0007888748999999998524731598760457
Q gi|254780401|r 52 FVMGGTGKTPTALAIAKAVIDKNLKPGFLSRGYG 85 (338)
Q Consensus 52 itvGGtGKTP~v~~l~~~l~~~g~~~~ilsRGYg 85 (338)
|.+|||| =+=.+|++.|.++|+.+.++.|.-.
T Consensus 25 LVTGgtG--fIG~~lv~~L~~~g~~v~~~~~~~~ 56 (344)
T 2gn4_A 25 LITGGTG--SFGKCFVRKVLDTTNAKKIIVYSRD 56 (344)
T ss_dssp EEETTTS--HHHHHHHHHHHHHCCCSEEEEEESC
T ss_pred EEECCCC--HHHHHHHHHHHHCCCCEEEEEEECC
T ss_conf 9988888--9999999999965998699997087
No 253
>>2c5a_A GDP-mannose-3', 5'-epimerase; short chain dehydratase/reductase, GDP-gulose, GDP-galactose, keto intermediate, vitamin C, SDR; HET: GDC NAD BTB; 1.4A {Arabidopsis thaliana} (A:)
Probab=53.29 E-value=14 Score=17.10 Aligned_cols=33 Identities=15% Similarity=-0.003 Sum_probs=26.2
Q ss_pred EEECCCCCCHHHHHHHHHHHHCCCCEEEEEECCCC
Q ss_conf 00078887489999999985247315987604578
Q gi|254780401|r 52 FVMGGTGKTPTALAIAKAVIDKNLKPGFLSRGYGR 86 (338)
Q Consensus 52 itvGGtGKTP~v~~l~~~l~~~g~~~~ilsRGYg~ 86 (338)
+.+|||| =+=.+|++.|.++|+.+.++.|.-..
T Consensus 33 LItGatG--fiG~~lv~~L~~~g~~v~~~~~~~~~ 65 (379)
T 2c5a_A 33 SITGAGG--FIASHIARRLKHEGHYVIASDWKKNE 65 (379)
T ss_dssp EEETTTS--HHHHHHHHHHHHTTCEEEEEESSCCS
T ss_pred EEECCCC--HHHHHHHHHHHHCCCEEEEEECCCCC
T ss_conf 9978888--89999999999782989999689852
No 254
>>2zpa_A Uncharacterized protein YPFI; RNA modification enzyme, RNA helicase, acetyltransferase, GCN5 acetyltransferase; HET: ACO ADP; 2.35A {Escherichia coli K12} (A:167-319)
Probab=53.16 E-value=5.4 Score=20.17 Aligned_cols=25 Identities=16% Similarity=0.150 Sum_probs=17.8
Q ss_pred ECCCCCCHHHHHHHHHHHHCCCCEEEEE
Q ss_conf 0788874899999999852473159876
Q gi|254780401|r 54 MGGTGKTPTALAIAKAVIDKNLKPGFLS 81 (338)
Q Consensus 54 vGGtGKTP~v~~l~~~l~~~g~~~~ils 81 (338)
-+|||||-+.-.+++.+ +.++.+.+
T Consensus 34 ~~GTGKT~~l~~~~~~~---~~~vl~~A 58 (153)
T 2zpa_A 34 ARGRGKSALAGQLISRI---AGRAIVTA 58 (153)
T ss_dssp CTTSSHHHHHHHHHHHS---SSCEEEEC
T ss_pred CCCCCHHHHHHHHHHHC---CCCEEEEC
T ss_conf 66786899999999840---79889989
No 255
>>3c1o_A Eugenol synthase; phenylpropene, PIP reductase, short-chain dehydrogenase/reductase, oxidoreductase; HET: NAP; 1.80A {Clarkia breweri} (A:)
Probab=53.01 E-value=16 Score=16.88 Aligned_cols=32 Identities=19% Similarity=0.248 Sum_probs=26.5
Q ss_pred EEECCCCCCHHHHHHHHHHHHCCCCEEEEEECCC
Q ss_conf 0007888748999999998524731598760457
Q gi|254780401|r 52 FVMGGTGKTPTALAIAKAVIDKNLKPGFLSRGYG 85 (338)
Q Consensus 52 itvGGtGKTP~v~~l~~~l~~~g~~~~ilsRGYg 85 (338)
+.+||||-. =..+++.|.++|+.|.+++|.-.
T Consensus 8 lVtGatG~i--G~~lv~~Ll~~g~~V~~~~r~~~ 39 (321)
T 3c1o_A 8 IIYGGTGYI--GKFMVRASLSFSHPTFIYARPLT 39 (321)
T ss_dssp EEETTTSTT--HHHHHHHHHHTTCCEEEEECCCC
T ss_pred EEECCCCHH--HHHHHHHHHHCCCCEEEEECCCC
T ss_conf 998999789--99999999968994899988886
No 256
>>1htw_A HI0065; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; HET: ADP; 1.70A {Haemophilus influenzae} (A:)
Probab=52.82 E-value=5.8 Score=19.93 Aligned_cols=34 Identities=24% Similarity=0.306 Sum_probs=24.3
Q ss_pred CEEEECCEEECCCCCCHHHHHHHHHHHHCCCCEEEEEECC
Q ss_conf 8899823000788874899999999852473159876045
Q gi|254780401|r 45 PVICVGGFVMGGTGKTPTALAIAKAVIDKNLKPGFLSRGY 84 (338)
Q Consensus 45 pVI~VGNitvGGtGKTP~v~~l~~~l~~~g~~~~ilsRGY 84 (338)
-|.-.|++ |+|||-+|..+++.|.- +-.|-|--|
T Consensus 35 ii~L~G~l---GAGKTtlvr~l~~~lg~---~~~V~SPTf 68 (158)
T 1htw_A 35 MVYLNGDL---GAGKTTLTRGMLQGIGH---QGNVKSPTY 68 (158)
T ss_dssp EEEEECST---TSSHHHHHHHHHHHTTC---CSCCCCCTT
T ss_pred EEEEECCC---CCCHHHHHHHHHHHCCC---CCCCCCCCC
T ss_conf 99998787---68999999999997687---787779950
No 257
>>3cpe_A Terminase, DNA packaging protein GP17; large terminase, alternative initiation, ATP-binding, DNA- binding, hydrolase, nuclease; HET: DNA; 2.80A {Bacteriophage T4} PDB: 3ezk_A* (A:146-383)
Probab=52.37 E-value=16 Score=16.82 Aligned_cols=27 Identities=22% Similarity=0.310 Sum_probs=18.0
Q ss_pred CCCCCCHHHHHHHHHHH--HCCCCEEEEE
Q ss_conf 78887489999999985--2473159876
Q gi|254780401|r 55 GGTGKTPTALAIAKAVI--DKNLKPGFLS 81 (338)
Q Consensus 55 GGtGKTP~v~~l~~~l~--~~g~~~~ils 81 (338)
=|+|||=++..++-.+. +.|.++.+++
T Consensus 42 tG~GKT~~~~~~~~~~~~~~~~~~vliv~ 70 (238)
T 3cpe_A 42 RQLGKTTVVAIFLAHFVCFNKDKAVGILA 70 (238)
T ss_dssp SSSCHHHHHHHHHHHHHHTSSSCEEEEEE
T ss_pred CCCCHHHHHHHHHHHHHHHCCCCEEEEEE
T ss_conf 98878999999999999849997699990
No 258
>>3i6i_A Putative leucoanthocyanidin reductase 1; rossmann fold, short chain dehydrogenase reductase, flavonoid, oxidoreductase; HET: NDP; 1.75A {Vitis vinifera} PDB: 3i5m_A 3i52_A* 3i6q_A* (A:)
Probab=52.31 E-value=16 Score=16.81 Aligned_cols=67 Identities=15% Similarity=0.062 Sum_probs=37.5
Q ss_pred CCEEEEEECCCCHHHHHHHHHHHCCC-CCCCCCCCCCCCCCHHHHHHHHHHHHHCCCE-EEECHHHHHH
Q ss_conf 86389874155357899988740100-0012214332348989999999975647987-9985466343
Q gi|254780401|r 222 GKKVLAFSGIADTEKFFTTVRQLGAL-IEQCYSFGDHAHLSDKKIAYLLDQAQQKGLI-LVTTAKDAMR 288 (338)
Q Consensus 222 ~k~v~afsGIa~P~~F~~~L~~~g~~-i~~~~~fpDHh~ys~~dl~~i~~~a~~~~~~-iiTTEKD~VK 288 (338)
+....-+.-+.|=.+....+-+.+-. ........+...++..|+.+++.++...... ...+..++-+
T Consensus 189 ~~~~~~~i~v~D~a~~~~~~l~~~~~~~~~~~~i~~~~~~s~~e~~~~i~~~~g~~~~~~~~~~~~~~~ 257 (346)
T 3i6i_A 189 GNVKAYFVAGTDIGKFTMKTVDDVRTLNKSVHFRPSCNCLNINELASVWEKKIGRTLPRVTVTEDDLLA 257 (346)
T ss_dssp SCCCEEEECHHHHHHHHHHHTTCGGGTTEEEECCCGGGEECHHHHHHHHHHHHTSCCCEEEECHHHHHH
T ss_pred CCCEEEECCHHHHHHHHHHHHCCHHHHCCEEEEECCCCCCCHHHHHHHHHHHHCCCCCEEECCHHHHHH
T ss_conf 985388505999999999996290331937998489887749999999999989988558789999999
No 259
>>2db3_A ATP-dependent RNA helicase VASA; DEAD-BOX, protein-RNA complex, ATPase, riken structural genomics/proteomics initiative, RSGI; HET: ANP; 2.20A {Drosophila melanogaster} (A:1-271)
Probab=52.13 E-value=12 Score=17.56 Aligned_cols=43 Identities=7% Similarity=0.151 Sum_probs=18.5
Q ss_pred CCCHHHHHHHHHHHCCCC--CCCCCCCCCCCC----CHHHHHHHHHHHH
Q ss_conf 553578999887401000--012214332348----9899999999756
Q gi|254780401|r 231 IADTEKFFTTVRQLGALI--EQCYSFGDHAHL----SDKKIAYLLDQAQ 273 (338)
Q Consensus 231 Ia~P~~F~~~L~~~g~~i--~~~~~fpDHh~y----s~~dl~~i~~~a~ 273 (338)
||.|.+....+++....+ ++.+.+.+.... -..++..|.+...
T Consensus 184 V~TP~rl~~~~~~~~~~l~~~~~lVlDEaD~ll~~~f~~~~~~Il~~l~ 232 (271)
T 2db3_A 184 IATPGRLLDFVDRTFITFEDTRFVVLDEADRMLDMGFSEDMRRIMTHVT 232 (271)
T ss_dssp EECHHHHHHHHHTTSCCCTTCCEEEEETHHHHTSTTTHHHHHHHHHCTT
T ss_pred EECCCCCCCCCCCCCCCCCCCCEEEEECHHHCCCCCCHHHHHHHHHHHH
T ss_conf 9678644332111332225554999989132267421145999999843
No 260
>>3b9p_A CG5977-PA, isoform A; AAA ATPase, ATP-binding, nucleotide-binding, hydrolase; 2.70A {Drosophila melanogaster} (A:1-188)
Probab=51.87 E-value=6.1 Score=19.77 Aligned_cols=33 Identities=27% Similarity=0.184 Sum_probs=22.0
Q ss_pred CCCEEEECCEEECCCCCCHHHHHHHHHHHHCCCCEEEEE
Q ss_conf 898899823000788874899999999852473159876
Q gi|254780401|r 43 PIPVICVGGFVMGGTGKTPTALAIAKAVIDKNLKPGFLS 81 (338)
Q Consensus 43 ~~pVI~VGNitvGGtGKTP~v~~l~~~l~~~g~~~~ils 81 (338)
+--|+..|= =|||||-++.++|..+. .....++
T Consensus 54 ~~giLl~GP---pGtGKT~la~aiA~~l~---~~~~~~~ 86 (188)
T 3b9p_A 54 AKGLLLFGP---PGNGKTLLARAVATECS---ATFLNIS 86 (188)
T ss_dssp CSEEEEESS---SSSCHHHHHHHHHHHTT---CEEEEEE
T ss_pred CCEEEEECC---CCCCCCHHHHHHCCCCC---CCCCCCC
T ss_conf 834787789---99985325441012556---4102033
No 261
>>2r2a_A Uncharacterized protein; zonular occludens toxin, structural genomics, APC84050.2, PSI-2, protein structure initiative; HET: MSE; 1.82A {Neisseria meningitidis MC58} (A:)
Probab=51.85 E-value=4.6 Score=20.64 Aligned_cols=21 Identities=19% Similarity=0.168 Sum_probs=17.5
Q ss_pred CCCCCHHHHHHHHHHHHCCCC
Q ss_conf 888748999999998524731
Q gi|254780401|r 56 GTGKTPTALAIAKAVIDKNLK 76 (338)
Q Consensus 56 GtGKTP~v~~l~~~l~~~g~~ 76 (338)
|||||-++..+++.|....+.
T Consensus 15 GtGKT~~a~a~a~~l~~l~~~ 35 (199)
T 2r2a_A 15 GSGKTLKXVSXXANDEXFKPD 35 (199)
T ss_dssp TSSHHHHHHHHHHHCGGGSCC
T ss_pred CCHHHHHHHHHHHHHCCCCCC
T ss_conf 973999999999997767776
No 262
>>3d3j_A Enhancer of mRNA-decapping protein 3; HEDC3, cytoplasm, phosphoprotein, protein binding; 2.80A {Homo sapiens} (A:)
Probab=51.63 E-value=16 Score=16.74 Aligned_cols=152 Identities=11% Similarity=0.070 Sum_probs=72.5
Q ss_pred CCCEEEECCEEECCCCCCHHHHHHHHHHHHCCCCEEEEEECCCCCCCCCEEEECCCCCHHHHCCHHHHHHHCCCCCCCCC
Q ss_conf 89889982300078887489999999985247315987604578777755871456788770421233220576346520
Q gi|254780401|r 43 PIPVICVGGFVMGGTGKTPTALAIAKAVIDKNLKPGFLSRGYGRKSRISFRVDLEKHSAYDVGDEPLLLARRAVTIVTSD 122 (338)
Q Consensus 43 ~~pVI~VGNitvGGtGKTP~v~~l~~~l~~~g~~~~ilsRGYg~~~~~~~~v~~~~~~~~~vGDEp~lla~~~pv~V~~~ 122 (338)
|.-+|.+|+=.-||-| +.++++|..+|++|.+.-.+-..+++ +
T Consensus 133 ~~V~vl~G~gnnGgdg-----l~~AR~L~~~G~~V~v~~~~~~~~~~-------------~------------------- 175 (306)
T 3d3j_A 133 PTVALLCGPHVKGAQG-----ISCGRHLANHDVQVILFLPNFVKMLE-------------S------------------- 175 (306)
T ss_dssp CEEEEEECSSHHHHHH-----HHHHHHHHHTTCEEEEECCCCSSCCH-------------H-------------------
T ss_pred CEEEEEECCCCCCHHH-----HHHHHHHHHCCCEEEEEEECCCCCCH-------------H-------------------
T ss_conf 9799998999872999-----99999999779838999727866798-------------9-------------------
Q ss_pred HHHHHHHH-CCCCCCEEEECCCCCCCCCCCEEEEEEECCCCCCCCCCCCCCHHHHHCCHHHHHHHHHHHHCCCCH-HHHH
Q ss_conf 12256641-024574799718322344123069999618433566553761365210025566514544204412-4577
Q gi|254780401|r 123 RKIGVQML-LQEGVDIIIMDDGFHSADLQADFSLIVVNSHRGLGNGLVFPAGPLRVPLSRQLSYVDAILYVGNKK-NVIS 200 (338)
Q Consensus 123 R~~~~~~~-~~~~~diiIlDDGfQh~~l~rdl~Ivl~d~~~~~gn~~llPaGpLREp~~~~l~rad~vi~~~~~~-~~~~ 200 (338)
...++ .-......+..+.-.-.- ...+ ++||+.-|+|..+-.+.++.++=+. .+++..+-++.-... ....
T Consensus 176 ---~~~~~~~~~~~~~~~~~~~~~~~~--~~~d-liIDal~G~g~~r~~~~~~~~~li~-~~N~~~~~vlsiDiPSGl~~ 248 (306)
T 3d3j_A 176 ---ITNELSLFSKTQGQQVSSLKDLPT--SPVD-LVINCLDCPENVFLRDQPWYKAAVA-WANQNRAPVLSIDPPVHEVE 248 (306)
T ss_dssp ---HHHHHHHHHTSSCEEESCSTTSCS--SCCS-EEEEECCCTTCGGGGGCHHHHHHHH-HHHHSCCCEEEESCCCC---
T ss_pred ---HHHHHHHHHHCCCCEECCHHHHCC--CCCC-EEEECCCCCCCCCCCCCHHHHHHHH-HHHHCCCCEEEEECCCCCCC
T ss_conf ---999999998638965342355345--7775-8998424366677765199999999-99856997799858998887
Q ss_pred HHCCCCHHHHHHHHCCCCCCCCCEEEEEECCCCHHHHHHH
Q ss_conf 6313501112222013211168638987415535789998
Q gi|254780401|r 201 SIKNKSVYFAKLKPRLTFDLSGKKVLAFSGIADTEKFFTT 240 (338)
Q Consensus 201 ~~~~~~i~~~~~~~~~~~~l~~k~v~afsGIa~P~~F~~~ 240 (338)
...+...-.+-.-++.-....|+ +.++.||=|+.+++.
T Consensus 249 ~~v~a~~tvt~g~pK~gl~~~G~--~~l~diGip~~~~~~ 286 (306)
T 3d3j_A 249 QGIDAKWSLALGLPLPLGEHAGR--IYLCDIGIPQQVFQE 286 (306)
T ss_dssp --CCCSEEEEESSCCCCCGGGCE--EEEECCCCCHHHHHH
T ss_pred CCCCCCEEEECCCCCCCHHHCCE--EEEECCCCCHHHHHH
T ss_conf 76268878971873573655882--999768899899997
No 263
>>1z7e_A Protein aRNA; rossmann fold, OB-like fold, hydrolase; HET: ATP UGA; 3.00A {Escherichia coli} (A:303-660)
Probab=51.43 E-value=16 Score=16.71 Aligned_cols=32 Identities=6% Similarity=0.051 Sum_probs=26.1
Q ss_pred EEECCCCCCHHHHHHHHHHHHCCCCEEEEEECCC
Q ss_conf 0007888748999999998524731598760457
Q gi|254780401|r 52 FVMGGTGKTPTALAIAKAVIDKNLKPGFLSRGYG 85 (338)
Q Consensus 52 itvGGtGKTP~v~~l~~~l~~~g~~~~ilsRGYg 85 (338)
|.+|||| -+=.+|++.|.++|+.+.++.|.-.
T Consensus 17 lVtGatG--fiG~~lv~~Ll~~g~~v~~~~~~~~ 48 (358)
T 1z7e_A 17 LILGVNG--FIGNHLTERLLREDHYEVYGLDIGS 48 (358)
T ss_dssp EEETTTS--HHHHHHHHHHHHSSSEEEEEEESCC
T ss_pred EECCCCC--CCHHHHHHHHHHCCCCEEEEEECCC
T ss_conf 8678997--6389999999968998899996898
No 264
>>1q0u_A Bstdead; DEAD protein, RNA binding protein; 1.85A {Geobacillus stearothermophilus} (A:)
Probab=51.14 E-value=6.9 Score=19.41 Aligned_cols=93 Identities=19% Similarity=0.132 Sum_probs=42.6
Q ss_pred CCCCCCHH-HHHHHHHHHHCCCCEEEEEECCCCCCCCCEEEECCCCCHHHHCCHHHHHHHCCC--------CCCCCCHHH
Q ss_conf 78887489-999999985247315987604578777755871456788770421233220576--------346520122
Q gi|254780401|r 55 GGTGKTPT-ALAIAKAVIDKNLKPGFLSRGYGRKSRISFRVDLEKHSAYDVGDEPLLLARRAV--------TIVTSDRKI 125 (338)
Q Consensus 55 GGtGKTP~-v~~l~~~l~~~g~~~~ilsRGYg~~~~~~~~v~~~~~~~~~vGDEp~lla~~~p--------v~V~~~R~~ 125 (338)
=|||||-. ++-+...+......+- ...+.+....+.++-+|...+.+... ..++.....
T Consensus 50 TGSGKTlaf~lpil~~~~~~~~~~~------------~~~~~PTreL~~Qi~~~~~~l~~~~~~~~~~~~~~~~gg~~~~ 117 (219)
T 1q0u_A 50 TGTGKTHAYLLPIXEKIKPERAEVQ------------AVITAPTRELATQIYHETLKITKFCPKDRXIVARCLIGGTDKQ 117 (219)
T ss_dssp SSHHHHHHHHHHHHHHCCTTSCSCC------------EEEECSSHHHHHHHHHHHHHHHTTSCGGGCCCEEEECCCSHHH
T ss_pred CCCCCCCEEECCHHHCCCCCCCCCC------------CCCCCCCHHHHHHHHHHHHHHHCCCCCCCEEEEEEEECCCCHH
T ss_conf 9999764321002221342345765------------5322574999998887663320012334201025655671439
Q ss_pred HHHHHCCCCCCEEEE------CCCCCCCCCCCEEEEEEEC
Q ss_conf 566410245747997------1832234412306999961
Q gi|254780401|r 126 GVQMLLQEGVDIIIM------DDGFHSADLQADFSLIVVN 159 (338)
Q Consensus 126 ~~~~~~~~~~diiIl------DDGfQh~~l~rdl~Ivl~d 159 (338)
.-......++++++- |..-++.---.++..+++|
T Consensus 118 ~~~~~l~~~~~iiv~Tpgrl~~~~~~~~~~l~~i~~lVlD 157 (219)
T 1q0u_A 118 KALEKLNVQPHIVIGTPGRINDFIREQALDVHTAHILVVD 157 (219)
T ss_dssp HTTCCCSSCCSEEEECHHHHHHHHHTTCCCGGGCCEEEEC
T ss_pred HHHHHHCCCCCEEEECCHHHHHHHHCCCCCCCCCEEEEEE
T ss_conf 9999737999889968737899987277544653279986
No 265
>>1wp9_A ATP-dependent RNA helicase, putative; ATPase, DNA replication, DNA repair, DNA recombination, hydrolase; 2.90A {Pyrococcus furiosus dsm 3638} (A:1-196)
Probab=50.98 E-value=17 Score=16.67 Aligned_cols=27 Identities=33% Similarity=0.303 Sum_probs=18.8
Q ss_pred CCCCCCHHHHHHHH-HHHHCCCCEEEEE
Q ss_conf 78887489999999-9852473159876
Q gi|254780401|r 55 GGTGKTPTALAIAK-AVIDKNLKPGFLS 81 (338)
Q Consensus 55 GGtGKTP~v~~l~~-~l~~~g~~~~ils 81 (338)
-|+|||=+....+. .+.+.+.++.++.
T Consensus 32 tG~GKT~~~~~~~l~~~~~~~~~vl~i~ 59 (196)
T 1wp9_A 32 TGLGKTLIAMMIAEYRLTKYGGKVLMLA 59 (196)
T ss_dssp TTSCHHHHHHHHHHHHHHHSCSCEEEEC
T ss_pred CCCHHHHHHHHHHHHHHHHCCCCEEEEE
T ss_conf 9773999999999999985599199992
No 266
>>1tf7_A KAIC; homohexamer, hexamer, circadian clock protein; HET: ATP; 2.80A {Synechococcus SP} (A:1-254)
Probab=50.96 E-value=13 Score=17.38 Aligned_cols=31 Identities=23% Similarity=0.270 Sum_probs=24.6
Q ss_pred CCCCCCHHHHHHH-HHHHHCCCCEEEEEECCC
Q ss_conf 7888748999999-998524731598760457
Q gi|254780401|r 55 GGTGKTPTALAIA-KAVIDKNLKPGFLSRGYG 85 (338)
Q Consensus 55 GGtGKTP~v~~l~-~~l~~~g~~~~ilsRGYg 85 (338)
-|+|||-++..++ ......|.++.++|-.+.
T Consensus 48 pG~GKT~~~~q~~~~~~~~~~~~~~~~s~e~~ 79 (254)
T 1tf7_A 48 SGTGKTLFSIQFLYNGIIEFDEPGVFVTFEET 79 (254)
T ss_dssp TTSSHHHHHHHHHHHHHHHHCCCEEEEESSSC
T ss_pred CCCCHHHHHHHHHHHHHHHCCCEEEEEECCCC
T ss_conf 99999999999999999867981999977799
No 267
>>1n2s_A DTDP-4-, DTDP-glucose oxidoreductase; rossman-fold, sugar-nucleotide-binding domain; HET: NAD; 2.00A {Salmonella enterica subsp} (A:)
Probab=50.86 E-value=13 Score=17.55 Aligned_cols=33 Identities=9% Similarity=0.100 Sum_probs=27.6
Q ss_pred EEECCCCCCHHHHHHHHHHHHCCCCEEEEEECCCC
Q ss_conf 00078887489999999985247315987604578
Q gi|254780401|r 52 FVMGGTGKTPTALAIAKAVIDKNLKPGFLSRGYGR 86 (338)
Q Consensus 52 itvGGtGKTP~v~~l~~~l~~~g~~~~ilsRGYg~ 86 (338)
|.+|||| -+=.+|++.|.++|+.+.++.|.--.
T Consensus 4 LVtGatG--fiG~~l~~~L~~~g~~v~~~~r~~~~ 36 (299)
T 1n2s_A 4 LLFGKTG--QVGWELQRSLAPVGNLIALDVHSKEF 36 (299)
T ss_dssp EEECTTS--HHHHHHHHHTTTTSEEEEECTTCSSS
T ss_pred EEECCCC--HHHHHHHHHHHHCCCEEEEECCCCCC
T ss_conf 9989998--89999999998789999997898544
No 268
>>1ja1_A NADPH-cytochrome P450 reductase; oxidoreductase; HET: FAD FMN NAP EPE; 1.80A {Rattus norvegicus} (A:464-622)
Probab=50.83 E-value=12 Score=17.68 Aligned_cols=28 Identities=32% Similarity=0.318 Sum_probs=21.3
Q ss_pred CCCCEEEECCEEECCCCCCHHHHHHHHHHHHC
Q ss_conf 88988998230007888748999999998524
Q gi|254780401|r 42 APIPVICVGGFVMGGTGKTPTALAIAKAVIDK 73 (338)
Q Consensus 42 ~~~pVI~VGNitvGGtGKTP~v~~l~~~l~~~ 73 (338)
..-|+|.| +||||=||+.-+|-..+...
T Consensus 5 ~~~~~i~I----a~GtGIaP~~s~l~~~~~~~ 32 (159)
T 1ja1_A 5 STTPVIMV----GPGTGIAPFMGFIQERAWLR 32 (159)
T ss_dssp TTSCEEEE----CCGGGGHHHHHHHHHHHHHH
T ss_pred CCCCEEEE----ECCCCCHHHHHHHHHHHHHH
T ss_conf 99987999----56866302789999999998
No 269
>>2oil_A CATX-8, RAS-related protein RAB-25; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.30A {Homo sapiens} (A:)
Probab=50.76 E-value=7.6 Score=19.08 Aligned_cols=26 Identities=23% Similarity=0.372 Sum_probs=17.8
Q ss_pred CCCCCCEEEECCEEECCCCCCHHHHHHHH
Q ss_conf 33889889982300078887489999999
Q gi|254780401|r 40 LHAPIPVICVGGFVMGGTGKTPTALAIAK 68 (338)
Q Consensus 40 ~~~~~pVI~VGNitvGGtGKTP~v~~l~~ 68 (338)
+.....||.||+ +|.|||-++..++.
T Consensus 22 ~~~~~KiiivGd---~gVGKTsLi~r~~~ 47 (193)
T 2oil_A 22 YNFVFKVVLIGE---SGVGKTNLLSRFTR 47 (193)
T ss_dssp CSEEEEEEEESS---TTSSHHHHHHHHHH
T ss_pred CCEEEEEEEECC---CCCCHHHHHHHHHC
T ss_conf 777889999998---99799999999964
No 270
>>2ce7_A Cell division protein FTSH; metalloprotease; HET: ADP; 2.44A {Thermotoga maritima} (A:1-185)
Probab=50.73 E-value=7.5 Score=19.11 Aligned_cols=33 Identities=36% Similarity=0.348 Sum_probs=22.9
Q ss_pred CCCEEEECCEEECCCCCCHHHHHHHHHHHHCCCCEEEEE
Q ss_conf 898899823000788874899999999852473159876
Q gi|254780401|r 43 PIPVICVGGFVMGGTGKTPTALAIAKAVIDKNLKPGFLS 81 (338)
Q Consensus 43 ~~pVI~VGNitvGGtGKTP~v~~l~~~l~~~g~~~~ils 81 (338)
+--++--|- -|||||=++.++|+.+. .....++
T Consensus 49 ~~giLL~Gp---pGtGKT~la~ala~~l~---~~~~~i~ 81 (185)
T 2ce7_A 49 PKGILLVGP---PGTGKTLLARAVAGEAN---VPFFHIS 81 (185)
T ss_dssp CSEEEEECC---TTSSHHHHHHHHHHHHT---CCEEEEE
T ss_pred CCEEEEECC---CCCCHHHHHHHHHHHHC---CCEEEEE
T ss_conf 965999799---99988999999986308---8179988
No 271
>>1m1n_B Nitrogenase molybdenum-iron protein beta chain; atomic resolution, FEMO cofactor, nitrogen fixation, central nitrogen ligand; HET: HCA CLF CFN; 1.16A {Azotobacter vinelandii} (B:33-63,B:339-522)
Probab=50.66 E-value=17 Score=16.63 Aligned_cols=70 Identities=13% Similarity=0.086 Sum_probs=38.5
Q ss_pred HHHHHHHHHHHHCCCCEEEEEECCCCCCCCCEEEECCCCCHHHHCCHHHHHHH--CCCCCCCCCHHHHHHHHCCCCCCEE
Q ss_conf 89999999985247315987604578777755871456788770421233220--5763465201225664102457479
Q gi|254780401|r 61 PTALAIAKAVIDKNLKPGFLSRGYGRKSRISFRVDLEKHSAYDVGDEPLLLAR--RAVTIVTSDRKIGVQMLLQEGVDII 138 (338)
Q Consensus 61 P~v~~l~~~l~~~g~~~~ilsRGYg~~~~~~~~v~~~~~~~~~vGDEp~lla~--~~pv~V~~~R~~~~~~~~~~~~dii 138 (338)
..+..+++.|.+.|..|+.+.=+.+.+. ..+...++-.-+.. ...|+++.|-.+-...+.+.++|++
T Consensus 66 ~~~~~la~fL~ElGm~vv~~~~~~~~~~-----------~~e~~~~~l~~~~~~~~~~v~~~~d~~e~~~~i~~~~pDLi 134 (215)
T 1m1n_B 66 DFVMGLVKFLLELGCEPVHILCHNGNKR-----------WKKAVDAILAASPYGKNATVYIGKDLWHLRSLVFTDKPDFM 134 (215)
T ss_dssp HHHHHHHHHHHHTTCEEEEEEETTCCHH-----------HHHHHHHHHHTSGGGTTCEEEESCCHHHHHHHHHHSCCSEE
T ss_pred HHHHHHHHHHHHCCCCCEEEEECCCCHH-----------HHHHHHHHHHHCCCCCCCEEEECCCHHHHHHHHHHCCCCEE
T ss_conf 8999999999986997349994589978-----------99999999852556878779968999999999862799999
Q ss_pred EEC
Q ss_conf 971
Q gi|254780401|r 139 IMD 141 (338)
Q Consensus 139 IlD 141 (338)
|-.
T Consensus 135 ig~ 137 (215)
T 1m1n_B 135 IGN 137 (215)
T ss_dssp EEC
T ss_pred EEC
T ss_conf 978
No 272
>>1e32_A P97; membrane fusion; HET: ADP; 2.9A {Mus musculus} (A:198-371)
Probab=50.61 E-value=6.6 Score=19.53 Aligned_cols=34 Identities=29% Similarity=0.254 Sum_probs=22.0
Q ss_pred CCCCEEEECCEEECCCCCCHHHHHHHHHHHHCCCCEEEEE
Q ss_conf 8898899823000788874899999999852473159876
Q gi|254780401|r 42 APIPVICVGGFVMGGTGKTPTALAIAKAVIDKNLKPGFLS 81 (338)
Q Consensus 42 ~~~pVI~VGNitvGGtGKTP~v~~l~~~l~~~g~~~~ils 81 (338)
.+--++-.|- -|||||=++.++|+.+. .....++
T Consensus 40 ~~~giLl~Gp---pGtGKT~~a~AlA~~~~---~~~~~~~ 73 (174)
T 1e32_A 40 PPRGILLYGP---PGTGKTLIARAVANETG---AFFFLIN 73 (174)
T ss_dssp CCCEEEEECC---TTSSHHHHHHHHHHHTT---CEEEEEC
T ss_pred CCCEEEEECC---CCCCHHHHHHHHHHHHC---CCEEEEE
T ss_conf 8844798898---99998999999999969---9689998
No 273
>>1ixz_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 2.20A {Thermus thermophilus} (A:1-185)
Probab=50.54 E-value=6.7 Score=19.50 Aligned_cols=30 Identities=37% Similarity=0.221 Sum_probs=20.0
Q ss_pred EEEECCEEECCCCCCHHHHHHHHHHHHCCCCEEEEE
Q ss_conf 899823000788874899999999852473159876
Q gi|254780401|r 46 VICVGGFVMGGTGKTPTALAIAKAVIDKNLKPGFLS 81 (338)
Q Consensus 46 VI~VGNitvGGtGKTP~v~~l~~~l~~~g~~~~ils 81 (338)
++--|- =|||||-++.++|+.+.. ....++
T Consensus 52 iLl~Gp---pGtGKT~la~ala~~~~~---~~~~i~ 81 (185)
T 1ixz_A 52 VLLVGP---PGVGKTHLARAVAGEARV---PFITAS 81 (185)
T ss_dssp EEEECC---TTSSHHHHHHHHHHHTTC---CEEEEE
T ss_pred EEEECC---CCCCCHHHHHHHHHHCCC---CEEEEE
T ss_conf 687679---987720899999977399---769988
No 274
>>2hqr_A Putative transcriptional regulator; phosporylation-independent response regulator, H. pylori, symmetric dimer, signaling protein; NMR {Helicobacter pylori J99} (A:1-99)
Probab=50.46 E-value=17 Score=16.61 Aligned_cols=48 Identities=13% Similarity=0.221 Sum_probs=28.4
Q ss_pred CCCCCCCCHHHHHHHHCCCCCCEEEECCC--C----CCCCCCCEEEEEEECCCC
Q ss_conf 76346520122566410245747997183--2----234412306999961843
Q gi|254780401|r 115 AVTIVTSDRKIGVQMLLQEGVDIIIMDDG--F----HSADLQADFSLIVVNSHR 162 (338)
Q Consensus 115 ~pv~V~~~R~~~~~~~~~~~~diiIlDDG--f----Qh~~l~rdl~Ivl~d~~~ 162 (338)
..|.+..+-.+|...+.+..+|+|||+|+ + +=++..++.-|+++.+..
T Consensus 25 ~~v~~a~~~~~a~~~~~~~~~dlviLp~~~G~~ll~~lr~~~~~~pvI~lt~~~ 78 (99)
T 2hqr_A 25 FMADVTESLEDGEYLMDIRNYDLVMVSDKNALSFVSRIKEKHSSIVVLVSSDNP 78 (99)
T ss_dssp CCEEEESSHHHHHHHHTTSCCSEEEECCTTHHHHHHHHHHHCTTSEEEEEESSC
T ss_pred CEEEEECCHHHHHHHHHHCCCCHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
T ss_conf 999998999999999973698611022233211112222222222221233211
No 275
>>2p5y_A UDP-glucose 4-epimerase; TTHA0591, structural genomics, PSI; HET: NAD; 1.92A {Thermus thermophilus HB8} PDB: 2p5u_A* (A:)
Probab=50.42 E-value=17 Score=16.61 Aligned_cols=33 Identities=21% Similarity=0.314 Sum_probs=26.8
Q ss_pred EEECCCCCCHHHHHHHHHHHHCCCCEEEEEECCCC
Q ss_conf 00078887489999999985247315987604578
Q gi|254780401|r 52 FVMGGTGKTPTALAIAKAVIDKNLKPGFLSRGYGR 86 (338)
Q Consensus 52 itvGGtGKTP~v~~l~~~l~~~g~~~~ilsRGYg~ 86 (338)
+.+|||| -+=.+|++.|.++|+.+.++.|.-..
T Consensus 4 lVtGatG--~iG~~lv~~Ll~~g~~V~~~~~~~~~ 36 (311)
T 2p5y_A 4 LVTGGAG--FIGSHIVEDLLARGLEVAVLDNLATG 36 (311)
T ss_dssp EEETTTS--HHHHHHHHHHHTTTCEEEEECCCSSC
T ss_pred EEECCCC--HHHHHHHHHHHHCCCEEEEEECCCCC
T ss_conf 9988878--89999999999786989999788866
No 276
>>1lv7_A FTSH; alpha/beta domain, four helix bundle, hydrolase; 1.50A {Escherichia coli} (A:1-181)
Probab=50.21 E-value=7.7 Score=19.05 Aligned_cols=34 Identities=41% Similarity=0.335 Sum_probs=23.3
Q ss_pred CCCCEEEECCEEECCCCCCHHHHHHHHHHHHCCCCEEEEE
Q ss_conf 8898899823000788874899999999852473159876
Q gi|254780401|r 42 APIPVICVGGFVMGGTGKTPTALAIAKAVIDKNLKPGFLS 81 (338)
Q Consensus 42 ~~~pVI~VGNitvGGtGKTP~v~~l~~~l~~~g~~~~ils 81 (338)
.|--++..|- -|||||-++.++|+.+. .....++
T Consensus 44 ~~~giLl~Gp---pGtGKT~la~a~a~~~~---~~~~~~~ 77 (181)
T 1lv7_A 44 IPKGVLMVGP---PGTGKTLLAKAIAGEAK---VPFFTIS 77 (181)
T ss_dssp CCCEEEEECC---TTSCHHHHHHHHHHHHT---CCEEEEC
T ss_pred CCCEEEEECC---CCCCHHHHHHHHHHHCC---CCEEEEE
T ss_conf 8975786689---99877699999998809---9869988
No 277
>>1vzy_A 33 kDa chaperonin; chaperone, heat shock protein, crystal engineering, molecular chaperone, redox-active center, PSI; 1.97A {Bacillus subtilis} (A:238-291)
Probab=50.14 E-value=12 Score=17.72 Aligned_cols=40 Identities=13% Similarity=0.192 Sum_probs=30.5
Q ss_pred HHHHHHHHHHHCCCCCCCCCCCCCCCCCHHHHHHHHHHHH
Q ss_conf 5789998874010000122143323489899999999756
Q gi|254780401|r 234 TEKFFTTVRQLGALIEQCYSFGDHAHLSDKKIAYLLDQAQ 273 (338)
Q Consensus 234 P~~F~~~L~~~g~~i~~~~~fpDHh~ys~~dl~~i~~~a~ 273 (338)
++-..++|.+.|.--+....-..||.|+..|+..|+..++
T Consensus 14 ~~el~~il~e~g~iev~C~FC~~~Y~f~~~el~~l~~~~~ 53 (54)
T 1vzy_A 14 KKEIQDMIEEDGQAEAVCHFCNEKYLFTKEELEGLRDQTT 53 (54)
T ss_dssp HHHHHHHHHHHSEEEEECTTTCCEEEEEHHHHHHHHHHCC
T ss_pred HHHHHHHHHCCCCEEEEEECCCCEEEECHHHHHHHHHHCC
T ss_conf 9999999963997899976879989879999999986513
No 278
>>1mio_B Nitrogenase molybdenum iron protein (beta chain); HET: HCA CFM CLP; 3.00A {Clostridium pasteurianum} (B:310-418)
Probab=50.11 E-value=17 Score=16.57 Aligned_cols=82 Identities=20% Similarity=0.178 Sum_probs=43.3
Q ss_pred HHHHHHHHHHHHCCCCEEEEEECCCCCCCCCEEEECCCCCHHHHCCHHHHHHHC---CC-CCCCCCHHHHHHHHCCCCCC
Q ss_conf 899999999852473159876045787777558714567887704212332205---76-34652012256641024574
Q gi|254780401|r 61 PTALAIAKAVIDKNLKPGFLSRGYGRKSRISFRVDLEKHSAYDVGDEPLLLARR---AV-TIVTSDRKIGVQMLLQEGVD 136 (338)
Q Consensus 61 P~v~~l~~~l~~~g~~~~ilsRGYg~~~~~~~~v~~~~~~~~~vGDEp~lla~~---~p-v~V~~~R~~~~~~~~~~~~d 136 (338)
..+..+++.|++.|..|..+.=+++. ...--++--.++.. .+ |+.+.|..+-.+.+.+.++|
T Consensus 13 ~~~~~l~~~l~ElGm~vv~~~~~~~~--------------~~~~~~~~~~l~~~~~~~~~vv~~~d~~el~~~i~~~~pD 78 (109)
T 1mio_B 13 DEIIALSKFIIELGAIPKYVVTGTPG--------------MKFQKEIDAMLAEAGIEGSKVKVEGDFFDVHQWIKNEGVD 78 (109)
T ss_dssp HHHHHHHHHHHTTTCEEEEEEESSCC--------------HHHHHHHHHHHHTTTCCSCEEEESCBHHHHHHHHHHSCCS
T ss_pred HHHHHHHHHHHHCCCEEEEEEECCCC--------------HHHHHHHHHHHHHCCCCCCEEEECCCHHHHHHHHHHCCCC
T ss_conf 88999999999849901488726897--------------7778999999986589887899799999999999744999
Q ss_pred EEEECCCCCCCCCCCEEEEEEE
Q ss_conf 7997183223441230699996
Q gi|254780401|r 137 IIIMDDGFHSADLQADFSLIVV 158 (338)
Q Consensus 137 iiIlDDGfQh~~l~rdl~Ivl~ 158 (338)
++|-. -.-+.+.+.+.|=++
T Consensus 79 liig~--s~~~~~a~klgiP~i 98 (109)
T 1mio_B 79 LLISN--TYGKFIAREENIPFV 98 (109)
T ss_dssp EEEES--GGGHHHHHHHTCCEE
T ss_pred EEEEC--CHHHHHHHHCCCCEE
T ss_conf 99979--458999998299989
No 279
>>3ius_A Uncharacterized conserved protein; APC63810, silicibacter pomeroyi DSS, structural genomics, PSI-2, protein structure initiative; HET: MSE; 1.66A {Ruegeria pomeroyi dss-3} (A:)
Probab=50.10 E-value=17 Score=16.57 Aligned_cols=33 Identities=21% Similarity=0.156 Sum_probs=26.9
Q ss_pred EEECCCCCCHHHHHHHHHHHHCCCCEEEEEECCCC
Q ss_conf 00078887489999999985247315987604578
Q gi|254780401|r 52 FVMGGTGKTPTALAIAKAVIDKNLKPGFLSRGYGR 86 (338)
Q Consensus 52 itvGGtGKTP~v~~l~~~l~~~g~~~~ilsRGYg~ 86 (338)
|.+|||| -+=.+|++.|.++|+.|..+.|.-..
T Consensus 8 LVtGatG--~iG~~l~~~L~~~g~~V~~~~r~~~~ 40 (286)
T 3ius_A 8 LLSFGHG--YTARVLSRALAPQGWRIIGTSRNPDQ 40 (286)
T ss_dssp EEEETCC--HHHHHHHHHHGGGTCEEEEEESCGGG
T ss_pred EEEECCH--HHHHHHHHHHHHCCCEEEEEECCCHH
T ss_conf 8998960--99999999999789989999388133
No 280
>>3cg0_A Response regulator receiver modulated diguanylate cyclase with PAS/PAC sensor; signal receiver domain; 2.15A {Desulfovibrio desulfuricans subsp} (A:1-91)
Probab=50.08 E-value=7.9 Score=18.95 Aligned_cols=30 Identities=17% Similarity=0.081 Sum_probs=22.3
Q ss_pred CCCC-CCCCHHHHHHHHCCCCCCEEEECCCC
Q ss_conf 7634-65201225664102457479971832
Q gi|254780401|r 115 AVTI-VTSDRKIGVQMLLQEGVDIIIMDDGF 144 (338)
Q Consensus 115 ~pv~-V~~~R~~~~~~~~~~~~diiIlDDGf 144 (338)
..|+ .+.+-.+|.+.+.+..+|+||+|=-+
T Consensus 34 ~~v~~~a~~g~~Al~~~~~~~pDliilDi~l 64 (91)
T 3cg0_A 34 YDVLGVFDNGEEAVRCAPDLRPDIALVDIML 64 (91)
T ss_dssp CEEEEEESSHHHHHHHHHHHCCSEEEEESSC
T ss_pred CCEEEEECCHHHHHHHHHHCCCCEEEEEECC
T ss_conf 9569986899999999983799889986035
No 281
>>1qyd_A Pinoresinol-lariciresinol reductase; NADPH-dependent aromatic alcohol reductases, pcber, PLR, IFR, lignans, isoflavonoids, plant protein; 2.50A {Thuja plicata} (A:)
Probab=50.08 E-value=15 Score=16.93 Aligned_cols=60 Identities=12% Similarity=0.086 Sum_probs=35.1
Q ss_pred CCEEEEEECCCCHHHHHHHHHHHCCCCC-CCCCCCCCCCCCHHHHHHHHHHHHHCCCEEEE
Q ss_conf 8638987415535789998874010000-12214332348989999999975647987998
Q gi|254780401|r 222 GKKVLAFSGIADTEKFFTTVRQLGALIE-QCYSFGDHAHLSDKKIAYLLDQAQQKGLILVT 281 (338)
Q Consensus 222 ~k~v~afsGIa~P~~F~~~L~~~g~~i~-~~~~fpDHh~ys~~dl~~i~~~a~~~~~~iiT 281 (338)
+....-+.-+.|-..+...+-+..-... +.....+...++..|+.+++.++......+..
T Consensus 188 ~~~~~~~i~~~D~a~~~~~~~~~~~~~~~~~~~i~~~~~~s~~e~~~~~~~~~g~~~~~~~ 248 (313)
T 1qyd_A 188 GNVKGIWVDEDDVGTYTIKSIDDPQTLNKTMYIRPPMNILSQKEVIQIWERLSEQNLDKIY 248 (313)
T ss_dssp SCSEEEEECHHHHHHHHHHHTTCGGGSSSEEECCCGGGEEEHHHHHHHHHHHHTCCCEECC
T ss_pred CCCCCCCCCHHHHHHHHHHHHCCCCCCCCEEEEECCCCCCCHHHHHHHHHHHHCCCCEEEE
T ss_conf 7640364129999999999966911029679994899887799999999999899870898
No 282
>>3iuy_A Probable ATP-dependent RNA helicase DDX53; REC-A-like, DEAD-BOX, structural genomics, structural genomics consortium, SGC, ATP-binding, hydrolase; HET: AMP; 2.40A {Homo sapiens} (A:)
Probab=49.98 E-value=16 Score=16.70 Aligned_cols=101 Identities=20% Similarity=0.195 Sum_probs=46.4
Q ss_pred ECCCCCCHHHHHHHHHHHHCCCCEEEEEECCCCCCCCCEEEECCCCCHHHHCCHHHHHHHCCC----CCCCCCHHHHHHH
Q ss_conf 078887489999999985247315987604578777755871456788770421233220576----3465201225664
Q gi|254780401|r 54 MGGTGKTPTALAIAKAVIDKNLKPGFLSRGYGRKSRISFRVDLEKHSAYDVGDEPLLLARRAV----TIVTSDRKIGVQM 129 (338)
Q Consensus 54 vGGtGKTP~v~~l~~~l~~~g~~~~ilsRGYg~~~~~~~~v~~~~~~~~~vGDEp~lla~~~p----v~V~~~R~~~~~~ 129 (338)
-=|||||=. |+.-.+.......... +....-..+++.+...-+.++-+|...+..... +..+..+..-. .
T Consensus 65 ~TGSGKT~a--f~ip~l~~~~~~~~~~---~~~~~~~~lIl~PTrELa~Qi~~~~~~l~~~~~~~~~~~~~~~~~~~~-~ 138 (228)
T 3iuy_A 65 QTGTGKTLS--YLMPGFIHLDSQPISR---EQRNGPGMLVLTPTRELALHVEAECSKYSYKGLKSICIYGGRNRNGQI-E 138 (228)
T ss_dssp CTTSCHHHH--HHHHHHHHHC------------CCCSEEEECSSHHHHHHHHHHHHHHCCTTCCEEEECC------CH-H
T ss_pred CCCCCCCCH--HHHHHHHHHHCCCCCC---CCCCCCEEEEEECCHHHHHHHHHHHHHHCCCCCEEEEEECCCCHHHHH-H
T ss_conf 899986501--4777899875152100---146785599980532468999999998645998799998998879999-9
Q ss_pred HCCCCCCEEEECCC-----C-CCCCCCCEEEEEEECC
Q ss_conf 10245747997183-----2-2344123069999618
Q gi|254780401|r 130 LLQEGVDIIIMDDG-----F-HSADLQADFSLIVVNS 160 (338)
Q Consensus 130 ~~~~~~diiIlDDG-----f-Qh~~l~rdl~Ivl~d~ 160 (338)
....++++++.--| + ++.---..+..+++|-
T Consensus 139 ~~~~~~~ivv~Tpgrl~~~~~~~~~~l~~l~~lVlDE 175 (228)
T 3iuy_A 139 DISKGVDIIIATPGRLNDLQMNNSVNLRSITYLVIDE 175 (228)
T ss_dssp HHHSCCSEEEECHHHHHHHHHTTCCCCTTCCEEEECC
T ss_pred HHCCCCCEEEECCHHHHHCCCCCCCCCCCCEEEEECC
T ss_conf 8628999999796455434666751267624998514
No 283
>>2qp9_X Vacuolar protein sorting-associated protein 4; ATPase domain, beta domain, C-terminal helix, ATP-binding, endosome, nucleotide-binding; 2.90A {Saccharomyces cerevisiae} PDB: 2qpa_A* (X:1-216,X:335-355)
Probab=49.97 E-value=7.8 Score=19.01 Aligned_cols=35 Identities=26% Similarity=0.134 Sum_probs=25.1
Q ss_pred CCCCCEEEECCEEECCCCCCHHHHHHHHHHHHCCCCEEEEE
Q ss_conf 38898899823000788874899999999852473159876
Q gi|254780401|r 41 HAPIPVICVGGFVMGGTGKTPTALAIAKAVIDKNLKPGFLS 81 (338)
Q Consensus 41 ~~~~pVI~VGNitvGGtGKTP~v~~l~~~l~~~g~~~~ils 81 (338)
..+--|+..|-- |||||-++.+||+.+. .....++
T Consensus 82 ~~~~giLl~GPP---GtGKT~lakaiA~~l~---~~~~~~~ 116 (237)
T 2qp9_X 82 KPTSGILLYGPP---GTGKSYLAKAVATEAN---STFFSVS 116 (237)
T ss_dssp CCCCCEEEECST---TSCHHHHHHHHHHHHT---CEEEEEE
T ss_pred CCCCCCEEECCC---CCCCCHHHHHHHHHHH---CCCEEEE
T ss_conf 888865446899---9986447787898874---2462765
No 284
>>2vsf_A XPD, DNA repair helicase RAD3 related protein; NER, TFIIH, hydrolase, ATP-binding, nucleotide-binding, iron sulfur cluster; HET: DNA; 2.9A {Thermoplasma acidophilum} (A:1-196,A:353-390)
Probab=49.93 E-value=4.3 Score=20.87 Aligned_cols=30 Identities=27% Similarity=0.305 Sum_probs=23.4
Q ss_pred CCCCCC-HHHHHHHHHHHHCCCCEEEEEECC
Q ss_conf 788874-899999999852473159876045
Q gi|254780401|r 55 GGTGKT-PTALAIAKAVIDKNLKPGFLSRGY 84 (338)
Q Consensus 55 GGtGKT-P~v~~l~~~l~~~g~~~~ilsRGY 84 (338)
=||||| =+.+.+.+++.+.+.++.|+++-.
T Consensus 13 TGsGKTlayLlp~l~~l~~~~~k~iIltPT~ 43 (234)
T 2vsf_A 13 TGSGKTIMALKSALQYSSERKLKVLYLVRTN 43 (234)
T ss_dssp SSSSTTHHHHHTTCSSTTTTSCEEEEEESSH
T ss_pred CHHHHHHHHHHHHHHHHHHCCCEEEEECCCH
T ss_conf 7688999999999999997699199986679
No 285
>>2qt1_A Nicotinamide riboside kinase 1; non-protein kinase, NAD+, NRK1, nicotinic acid riboside kinase activity, NAD biosynthesis; HET: NNR; 1.32A {Homo sapiens} PDB: 2qsy_A* 2qsz_A* 2qt0_A* 2p0e_A* 2qg6_A* 2ql6_A* (A:)
Probab=49.70 E-value=12 Score=17.71 Aligned_cols=32 Identities=25% Similarity=0.331 Sum_probs=17.6
Q ss_pred CCEEEECCEEECCCCCCHHHHHHHHHHHHCCCCEEEEE
Q ss_conf 98899823000788874899999999852473159876
Q gi|254780401|r 44 IPVICVGGFVMGGTGKTPTALAIAKAVIDKNLKPGFLS 81 (338)
Q Consensus 44 ~pVI~VGNitvGGtGKTP~v~~l~~~l~~~g~~~~ils 81 (338)
..+|+|.-. -|+||| -||+.|.+.+..+.+.+
T Consensus 21 ~~iI~i~G~--~GsGKt----Tla~~L~~~~~~~~~~~ 52 (207)
T 2qt1_A 21 TFIIGISGV--TNSGKT----TLAKNLQKHLPNCSVIS 52 (207)
T ss_dssp CEEEEEEES--TTSSHH----HHHHHHHTTSTTEEEEE
T ss_pred EEEEEEECC--CCCCHH----HHHHHHHHHHCCCEEEE
T ss_conf 299999999--987699----99999999808985995
No 286
>>1vq0_A 33 kDa chaperonin; TM1394, structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PSI; HET: UNL; 2.20A {Thermotoga maritima} (A:245-302)
Probab=49.52 E-value=18 Score=16.51 Aligned_cols=42 Identities=10% Similarity=0.109 Sum_probs=31.2
Q ss_pred HHHHHHHHHHHCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCC
Q ss_conf 5789998874010000122143323489899999999756479
Q gi|254780401|r 234 TEKFFTTVRQLGALIEQCYSFGDHAHLSDKKIAYLLDQAQQKG 276 (338)
Q Consensus 234 P~~F~~~L~~~g~~i~~~~~fpDHh~ys~~dl~~i~~~a~~~~ 276 (338)
++-..+++++-.+.+ ....-..||.|++.|++.|++.+...+
T Consensus 15 ~~el~~i~~eg~iev-~C~fC~~~Y~f~~~el~~l~~~~~~~~ 56 (58)
T 1vq0_A 15 KKELEDMRKEGKGEV-VCKWCNTRYVFSEEELEELLKFKVDDS 56 (58)
T ss_dssp HHHHHHHHHHTCEEE-ECTTTCCEEEECHHHHHHHHHHHHHC-
T ss_pred HHHHHHHHHCCCEEE-EEECCCCEEEECHHHHHHHHHHCCCCC
T ss_conf 999999997598399-998989979869999999997425988
No 287
>>1zak_A Adenylate kinase; ATP:AMP-phosphotransferase, transferase; HET: AP5; 3.50A {Zea mays} (A:)
Probab=49.43 E-value=5.9 Score=19.88 Aligned_cols=39 Identities=21% Similarity=0.182 Sum_probs=29.3
Q ss_pred CCEEEECCEEECCCCCCHHHHHHHHHHHHCCCCEEEEEECCC
Q ss_conf 988998230007888748999999998524731598760457
Q gi|254780401|r 44 IPVICVGGFVMGGTGKTPTALAIAKAVIDKNLKPGFLSRGYG 85 (338)
Q Consensus 44 ~pVI~VGNitvGGtGKTP~v~~l~~~l~~~g~~~~ilsRGYg 85 (338)
.-|+..|. -|+|||-.+..|++.|...++.+....|-+.
T Consensus 6 ~~I~ieG~---~GSGKtT~a~~Lae~l~~~~i~~~~~~r~~~ 44 (222)
T 1zak_A 6 LKVMISGA---PASGKGTQCELIKTKYQLAHISAGDLLRAEI 44 (222)
T ss_dssp CCEEEEES---TTSSHHHHHHHHHHHHCCEECCHHHHHHHHH
T ss_pred CEEEEECC---CCCCHHHHHHHHHHHHCCEEECHHHHHHHHH
T ss_conf 08999899---9999799999999997997784899999988
No 288
>>1iuk_A Hypothetical protein TT1466; structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; 1.70A {Thermus thermophilus} (A:)
Probab=49.42 E-value=18 Score=16.50 Aligned_cols=89 Identities=8% Similarity=0.027 Sum_probs=51.4
Q ss_pred EECCCCC-CHHHHHHHHHHHHCCCCEEEEEECCCCCCCCCEEEECCCCCHHHHCCHHHHHHHCCCCCCCCCHHH-HHHHH
Q ss_conf 0078887-489999999985247315987604578777755871456788770421233220576346520122-56641
Q gi|254780401|r 53 VMGGTGK-TPTALAIAKAVIDKNLKPGFLSRGYGRKSRISFRVDLEKHSAYDVGDEPLLLARRAVTIVTSDRKI-GVQML 130 (338)
Q Consensus 53 tvGGtGK-TP~v~~l~~~l~~~g~~~~ilsRGYg~~~~~~~~v~~~~~~~~~vGDEp~lla~~~pv~V~~~R~~-~~~~~ 130 (338)
.+|.|.+ +.....+++.|++.|+++.++..+++...-....+.. +..++.+++=+ +-+++..+... ..+.+
T Consensus 18 ViGaS~~~~~~g~~v~~~L~~~g~~~~~~~p~~~~~~i~g~~~~~---sl~~~~~~~D~----vvi~vp~~~~~~~l~e~ 90 (140)
T 1iuk_A 18 VLGAHKDPSRPAHYVPRYLREQGYRVLPVNPRFQGEELFGEEAVA---SLLDLKEPVDI----LDVFRPPSALMDHLPEV 90 (140)
T ss_dssp EETCCSSTTSHHHHHHHHHHHTTCEEEEECGGGTTSEETTEECBS---SGGGCCSCCSE----EEECSCHHHHTTTHHHH
T ss_pred EEEECCCCCCCHHHHHHHHHHCCCEEEEECCCCCCCEECCEEEEC---CHHHCCCCCCE----EEEEECHHHHHHHHHHH
T ss_conf 992269999719999999972898389978767642556827525---56775899728----99980889989999999
Q ss_pred CCCCCC-EEEECCCCCCCC
Q ss_conf 024574-799718322344
Q gi|254780401|r 131 LQEGVD-IIIMDDGFHSAD 148 (338)
Q Consensus 131 ~~~~~d-iiIlDDGfQh~~ 148 (338)
.+.++. +++.-+||+...
T Consensus 91 ~~~g~~~~~~~~g~~~e~~ 109 (140)
T 1iuk_A 91 LALRPGLVWLQSGIRHPEF 109 (140)
T ss_dssp HHHCCSCEEECTTCCCHHH
T ss_pred HHCCCCEEEECCCCCCHHH
T ss_conf 9649898998989779999
No 289
>>2dcl_A Hypothetical UPF0166 protein PH1503; hexamer, X-RAY diffraction, structural genomics, NPPSFA; HET: AMP; 2.28A {Pyrococcus horikoshii} (A:)
Probab=49.32 E-value=18 Score=16.49 Aligned_cols=84 Identities=18% Similarity=0.251 Sum_probs=48.2
Q ss_pred CCHHHHHHHHHHHHCCCCEEEEEECC---CCCCCCCEEEECCCCCHHHHCCHHHHHHHCCCCCC----CCCHHHHHHHHC
Q ss_conf 74899999999852473159876045---78777755871456788770421233220576346----520122566410
Q gi|254780401|r 59 KTPTALAIAKAVIDKNLKPGFLSRGY---GRKSRISFRVDLEKHSAYDVGDEPLLLARRAVTIV----TSDRKIGVQMLL 131 (338)
Q Consensus 59 KTP~v~~l~~~l~~~g~~~~ilsRGY---g~~~~~~~~v~~~~~~~~~vGDEp~lla~~~pv~V----~~~R~~~~~~~~ 131 (338)
--|+..|+.+.+++.|..=+.+.||. |...+ + | .+..+-++..-||+| .+++.+......
T Consensus 24 g~pl~~~il~~~r~~GiaGaTV~rgi~GfG~~g~--i------h-----~~~~~~ls~dlPvvVe~vd~~eki~~~l~~l 90 (127)
T 2dcl_A 24 GRPLYKVIVEKLREMGIAGATVYRGIYGFGKKSR--V------H-----SSDVIRLSTDLPIIVEVVDRGHNIEKVVNVI 90 (127)
T ss_dssp TEEHHHHHHHHHHHTTCSCEEEEECSEEEC---------------------------CCCEEEEEEEEEHHHHHHHHHHH
T ss_pred CEEHHHHHHHHHHHCCCCCEEEEECCEECCCCCC--C------C-----CCCHHHHCCCCCEEEEEECCHHHHHHHHHHH
T ss_conf 6399999999998879982699853152189987--1------2-----5622111699988999977999999999999
Q ss_pred C-C-CCCEEEECCCCCCCCCCCEEEEEEECCCCCCC
Q ss_conf 2-4-57479971832234412306999961843356
Q gi|254780401|r 132 Q-E-GVDIIIMDDGFHSADLQADFSLIVVNSHRGLG 165 (338)
Q Consensus 132 ~-~-~~diiIlDDGfQh~~l~rdl~Ivl~d~~~~~g 165 (338)
+ . .--+|++. |++++-+....++|
T Consensus 91 ~~l~~~glit~e----------~v~v~~~~~~~~~~ 116 (127)
T 2dcl_A 91 KPMIKDGMITVE----------PTIVLWVGTQEEIK 116 (127)
T ss_dssp TTTCSSSEEEEE----------ECEEEECCSSCC--
T ss_pred HHHCCCCEEEEE----------EEEEEEECCCCCCC
T ss_conf 986468649999----------88999966866533
No 290
>>2qen_A Walker-type ATPase; unknown function; HET: ADP; 2.25A {Pyrococcus abyssi} (A:1-202)
Probab=49.29 E-value=5.5 Score=20.07 Aligned_cols=32 Identities=16% Similarity=0.105 Sum_probs=22.5
Q ss_pred EEEECCEEECCCCCCHHHHHHHHHHHHCCCCEEEE
Q ss_conf 89982300078887489999999985247315987
Q gi|254780401|r 46 VICVGGFVMGGTGKTPTALAIAKAVIDKNLKPGFL 80 (338)
Q Consensus 46 VI~VGNitvGGtGKTP~v~~l~~~l~~~g~~~~il 80 (338)
|+..| .+|+|||-++..+++.+...+....+.
T Consensus 34 v~i~G---~~G~GKTsL~~~~~~~~~~~~~~~~~~ 65 (202)
T 2qen_A 34 TLLLG---IRRVGKSSLLRAFLNERPGILIDCREL 65 (202)
T ss_dssp EEEEC---CTTSSHHHHHHHHHHHSSEEEEEHHHH
T ss_pred EEEEC---CCCCCHHHHHHHHHHHCCCCCEEEEEE
T ss_conf 99981---999989999999999644544158998
No 291
>>2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A (A:428-654)
Probab=49.22 E-value=5.2 Score=20.26 Aligned_cols=96 Identities=17% Similarity=0.138 Sum_probs=43.8
Q ss_pred ECCEEECCCCCCHHHHHHHHHHHHCCCCEEEEEECCCCCCCCCEEEECCCCCHHHHC-------CHHH------------
Q ss_conf 823000788874899999999852473159876045787777558714567887704-------2123------------
Q gi|254780401|r 49 VGGFVMGGTGKTPTALAIAKAVIDKNLKPGFLSRGYGRKSRISFRVDLEKHSAYDVG-------DEPL------------ 109 (338)
Q Consensus 49 VGNitvGGtGKTP~v~~l~~~l~~~g~~~~ilsRGYg~~~~~~~~v~~~~~~~~~vG-------DEp~------------ 109 (338)
||=+=.-|+|||-+.-.|+...............+|-.... .... ...++.+.. +|..
T Consensus 37 i~lvG~NGaGKSTllk~l~g~~~~~~~~~~~~~~~~~~q~~--~~~~-~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 113 (227)
T 2iw3_A 37 YGICGPNGCGKSTLXRAIANGQVDGFPTQEECRTVYVEHDI--DGTH-SDTSVLDFVFESGVGTKEAIKDKLIEFGFTDE 113 (227)
T ss_dssp EEEECSTTSSHHHHHHHHHHTCSTTCCCTTTSCEEETTCCC--CCCC-TTSBHHHHHHTTCSSCHHHHHHHHHHTTCCHH
T ss_pred EEEECCCCCHHHHHHHHHHCCCCCCCCCHHHCCEEEEEECC--CCCC-CCCHHHHHHHHCCCCHHHHHHHHHHHCCCCHH
T ss_conf 37889999619999999968997887552113579997100--1357-76429999985794079999999986799714
Q ss_pred HHHHCCCCCCCCCHHH-HHHHHCCCCCCEEEECCCCCCC
Q ss_conf 3220576346520122-5664102457479971832234
Q gi|254780401|r 110 LLARRAVTIVTSDRKI-GVQMLLQEGVDIIIMDDGFHSA 147 (338)
Q Consensus 110 lla~~~pv~V~~~R~~-~~~~~~~~~~diiIlDDGfQh~ 147 (338)
...+..-...+..|.+ ++..+.-.+++++|||.=--|.
T Consensus 114 ~~~~~~~~LSGGqkqRv~lA~~l~~~p~lLiLDEPTn~L 152 (227)
T 2iw3_A 114 XIAXPISALSGGWKXKLALARAVLRNADILLLDEPTNHL 152 (227)
T ss_dssp HHHSBGGGCCHHHHHHHHHHHHHHTTCSEEEEESTTTTC
T ss_pred HHCCCHHHHHHHHHHHHHHHHHHHCCCCEEEEECCCCCC
T ss_conf 423728887889999999999873799813536897757
No 292
>>1xvl_A Mn transporter, MNTC protein; manganese, ABC-type transport systems, photosynthesis, cyanobacteria, disulfide bond, metal transport; 2.90A {Synechocystis SP} (A:202-291)
Probab=49.20 E-value=18 Score=16.48 Aligned_cols=50 Identities=8% Similarity=0.177 Sum_probs=40.0
Q ss_pred HHHHHHHHHHCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCEEEECHH
Q ss_conf 78999887401000012214332348989999999975647987998546
Q gi|254780401|r 235 EKFFTTVRQLGALIEQCYSFGDHAHLSDKKIAYLLDQAQQKGLILVTTAK 284 (338)
Q Consensus 235 ~~F~~~L~~~g~~i~~~~~fpDHh~ys~~dl~~i~~~a~~~~~~iiTTEK 284 (338)
..|--..+.+|++.+..+.-..+..-|.+++.++.+.+++++...|-+|.
T Consensus 11 ~af~Yf~~~ygl~~~~~~~~~~~~eps~~~i~~l~~~ik~~~i~~if~e~ 60 (90)
T 1xvl_A 11 GAFSYLARDYGMEEIYMWPINAEQQFTPKQVQTVIEEVKTNNVPTIFCES 60 (90)
T ss_dssp STTHHHHHHTTCEEEEEESSSSSCSCCHHHHHHHHHHHHTTTCSEEEEET
T ss_pred CCHHHHHHHCCCEEEEECCCCCCCCCCHHHHHHHHHHHHHCCCCEEEECC
T ss_conf 41146898679836640266887789988999999987634885899738
No 293
>>1ep3_B Dihydroorotate dehydrogenase B (PYRK subunit); heterotetramer, alpha-beta barrel, beta sandwich, FAD domain, alpha/beta NADP domain; HET: FMN FAD; 2.10A {Lactococcus lactis} (B:104-262)
Probab=49.18 E-value=13 Score=17.34 Aligned_cols=38 Identities=18% Similarity=0.177 Sum_probs=25.7
Q ss_pred CCCEEEECCEEECCCCCCHHHHHHHHHHHHCCCCEEEEEECCCCCC
Q ss_conf 8988998230007888748999999998524731598760457877
Q gi|254780401|r 43 PIPVICVGGFVMGGTGKTPTALAIAKAVIDKNLKPGFLSRGYGRKS 88 (338)
Q Consensus 43 ~~pVI~VGNitvGGtGKTP~v~~l~~~l~~~g~~~~ilsRGYg~~~ 88 (338)
.-|+|.| +||||=||+.-.+-..+.. +-++.++ |+.++
T Consensus 7 ~~~~i~I----agGtGIaP~~s~l~~~~~~-~~~v~l~---~g~r~ 44 (159)
T 1ep3_B 7 TDKILII----GGGIGVPPLYELAKQLEKT-GCQMTIL---LGFAS 44 (159)
T ss_dssp TSEEEEE----EEGGGSHHHHHHHHHHHHH-TCEEEEE---EEESS
T ss_pred CCEEEEE----ECCCCHHHHHHHHHHHHHC-CCCCEEE---EEECC
T ss_conf 7549999----3776588999999999984-9964899---99798
No 294
>>1e2k_A Thymidine kinase; transferase, antiviral drug, enzyme-prodrug gene therapy, sugar ring pucker; HET: TMC; 1.7A {Herpes simplex virus} (A:)
Probab=49.13 E-value=5.3 Score=20.21 Aligned_cols=38 Identities=21% Similarity=0.126 Sum_probs=27.6
Q ss_pred EEE-ECCEEECCCCCCHHHHHHHHHHHHCCCCEEEEEECCCC
Q ss_conf 899-82300078887489999999985247315987604578
Q gi|254780401|r 46 VIC-VGGFVMGGTGKTPTALAIAKAVIDKNLKPGFLSRGYGR 86 (338)
Q Consensus 46 VI~-VGNitvGGtGKTP~v~~l~~~l~~~g~~~~ilsRGYg~ 86 (338)
+|+ -||. |+|||-++..|++.|...++.+....-.|.+
T Consensus 6 ~I~ieG~~---GsGKTT~a~~L~~~L~~~~~~~~~~~~~~~~ 44 (331)
T 1e2k_A 6 RVYIDGPH---GMGKTTTTQLLVALGSRDDIVYVPEPMTYWR 44 (331)
T ss_dssp EEEECSCT---TSSHHHHHHHHTC----CCEEEECCCHHHHH
T ss_pred EEEEECCC---CCCHHHHHHHHHHHHCCCCCEEEECCHHHCC
T ss_conf 99998897---7789999999999845489379825422125
No 295
>>2i4i_A ATP-dependent RNA helicase DDX3X; DEAD, structural genomics, SGC, structural genomics consortium, hydrolase; HET: AMP; 2.20A {Homo sapiens} (A:1-245)
Probab=49.09 E-value=4.1 Score=20.97 Aligned_cols=49 Identities=12% Similarity=0.125 Sum_probs=20.2
Q ss_pred ECCCCCHHHHCCHHHHHHHCCC----CCCCCCHHHHHHHHCCCCCCEEEECCC
Q ss_conf 1456788770421233220576----346520122566410245747997183
Q gi|254780401|r 95 DLEKHSAYDVGDEPLLLARRAV----TIVTSDRKIGVQMLLQEGVDIIIMDDG 143 (338)
Q Consensus 95 ~~~~~~~~~vGDEp~lla~~~p----v~V~~~R~~~~~~~~~~~~diiIlDDG 143 (338)
.+...-+.++.++-.-+.+..+ ++++.............+++++|..=|
T Consensus 108 ~pt~ela~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~iiV~TP~ 160 (245)
T 2i4i_A 108 APTRELAVQIYEEARKFSYRSRVRPCVVYGGADIGQQIRDLERGCHLLVATPG 160 (245)
T ss_dssp CSSHHHHHHHHHHHHHHHTTSSCCEEEECSSSCHHHHHHHHTTCCSEEEECHH
T ss_pred CCCCCHHHHHHHHHHHHCCCCCCEEEEEECCCCHHHHHHHHHCCCCEEEECHH
T ss_conf 56511023455555420135543257630676689999998369989998959
No 296
>>1gvh_A Flavohemoprotein; oxidoreductase, NADP, heme, flavoprotein, FAD, iron transpor; HET: FAD HEM; 2.19A {Escherichia coli} (A:254-396)
Probab=48.92 E-value=17 Score=16.59 Aligned_cols=34 Identities=18% Similarity=0.188 Sum_probs=25.0
Q ss_pred CCEEEECCEEECCCCCCHHHHHHHHHHHHCCCCEEEEE
Q ss_conf 98899823000788874899999999852473159876
Q gi|254780401|r 44 IPVICVGGFVMGGTGKTPTALAIAKAVIDKNLKPGFLS 81 (338)
Q Consensus 44 ~pVI~VGNitvGGtGKTP~v~~l~~~l~~~g~~~~ils 81 (338)
-++|. .+||||=||+.-.+-..+.........+-
T Consensus 7 ~~iil----iAgGtGIaP~~s~l~~~~~~~~~~~i~l~ 40 (143)
T 1gvh_A 7 TPVTL----ISAGVGQTPMLAMLDTLAKAGHTAQVNWF 40 (143)
T ss_dssp CCEEE----EEEGGGGHHHHHHHHHHHHHTCCSCEEEE
T ss_pred CCEEE----EECCCCCCHHHHHHHHHHHHHCCCCCEEE
T ss_conf 74899----96788667068999999873034430430
No 297
>>1ulu_A Enoyl-acyl carrier protein reductase; oxidoreductase, structural genomics, riken structural genomics/proteomics initiative, RSGI; 2.00A {Thermus thermophilus} (A:)
Probab=48.86 E-value=18 Score=16.44 Aligned_cols=32 Identities=19% Similarity=0.247 Sum_probs=26.8
Q ss_pred EEECCCCCCHHHHHHHHHHHHCCCCEEEEEEC
Q ss_conf 00078887489999999985247315987604
Q gi|254780401|r 52 FVMGGTGKTPTALAIAKAVIDKNLKPGFLSRG 83 (338)
Q Consensus 52 itvGGtGKTP~v~~l~~~l~~~g~~~~ilsRG 83 (338)
|.+||||-+-.=..+++.|.++|+++.+..|-
T Consensus 12 lVTGass~~GIG~aia~~la~~Ga~V~i~~r~ 43 (261)
T 1ulu_A 12 LVXGVTNQRSLGFAIAAKLKEAGAEVALSYQA 43 (261)
T ss_dssp EEESCCCSSSHHHHHHHHHHHTTCEEEEEESS
T ss_pred EEECCCCCCHHHHHHHHHHHHCCCEEEEECCC
T ss_conf 99799998649999999999879999998074
No 298
>>1rpn_A GDP-mannose 4,6-dehydratase; short-chain dehydrogenase/reductase, rossmann fold, lyase; HET: NDP GDP; 2.15A {Pseudomonas aeruginosa} (A:1-189)
Probab=48.64 E-value=18 Score=16.42 Aligned_cols=33 Identities=24% Similarity=0.272 Sum_probs=25.9
Q ss_pred EEECCCCCCHHHHHHHHHHHHCCCCEEEEEECCCC
Q ss_conf 00078887489999999985247315987604578
Q gi|254780401|r 52 FVMGGTGKTPTALAIAKAVIDKNLKPGFLSRGYGR 86 (338)
Q Consensus 52 itvGGtGKTP~v~~l~~~l~~~g~~~~ilsRGYg~ 86 (338)
+.+||||- +=.+|++.|.++|+++.++.|.-..
T Consensus 18 lVTGgtGf--iG~~l~~~L~~~g~~V~~~~r~~~~ 50 (189)
T 1rpn_A 18 LVTGITGQ--DGAYLAKLLLEKGYRVHGLVARRSS 50 (189)
T ss_dssp EEETTTSH--HHHHHHHHHHHTTCEEEEEECCCSS
T ss_pred EEECCCCH--HHHHHHHHHHHCCCEEEEEECCCCC
T ss_conf 99758878--9999999999784989999899976
No 299
>>2qr3_A Two-component system response regulator; structural genomics, signal receiver, PSI-2, protein structure initiative; 1.80A {Bacteroides fragilis YCH46} (A:)
Probab=48.46 E-value=10 Score=18.14 Aligned_cols=27 Identities=19% Similarity=0.267 Sum_probs=17.6
Q ss_pred CCCCCCCCHHHHHHHHCCCCCCEEEEC
Q ss_conf 763465201225664102457479971
Q gi|254780401|r 115 AVTIVTSDRKIGVQMLLQEGVDIIIMD 141 (338)
Q Consensus 115 ~pv~V~~~R~~~~~~~~~~~~diiIlD 141 (338)
+.|..+.+-.+|...+.+..+|+||+|
T Consensus 28 ~~v~~a~~~~~al~~l~~~~~dliilD 54 (140)
T 2qr3_A 28 SKVITLSSPVSLSTVLREENPEVVLLD 54 (140)
T ss_dssp SEEEEECCHHHHHHHHHHSCEEEEEEE
T ss_pred CEEEEECCHHHHHHHHHHCCCCEEEEC
T ss_conf 999997787999999984078879862
No 300
>>2pl3_A Probable ATP-dependent RNA helicase DDX10; DEAD, structural genomics, structural genomics consortium, SGC, hydrolase; HET: ADP; 2.15A {Homo sapiens} (A:25-236)
Probab=48.40 E-value=16 Score=16.89 Aligned_cols=99 Identities=10% Similarity=0.100 Sum_probs=48.0
Q ss_pred ECCCCCCHH-HHHHHHHHHHCCCCEEEEEECCCCCCCCCEEEECCCCCHHHHCCHHHHHHHCC----CCCCCCCHHHHHH
Q ss_conf 078887489-99999998524731598760457877775587145678877042123322057----6346520122566
Q gi|254780401|r 54 MGGTGKTPT-ALAIAKAVIDKNLKPGFLSRGYGRKSRISFRVDLEKHSAYDVGDEPLLLARRA----VTIVTSDRKIGVQ 128 (338)
Q Consensus 54 vGGtGKTP~-v~~l~~~l~~~g~~~~ilsRGYg~~~~~~~~v~~~~~~~~~vGDEp~lla~~~----pv~V~~~R~~~~~ 128 (338)
-=|||||=. ++-+.+.+...... .........+......+.++-.+-..+++.. ..+++........
T Consensus 46 ~TGSGKTlaf~lP~~~~~~~~~~~--------~~~~~~~~~~~~~~el~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 117 (212)
T 2pl3_A 46 KTGSGKTLAFLVPVLEALYRLQWT--------STDGLGVLIISPTRELAYQTFEVLRKVGKNHDFSAGLIIGGKDLKHEA 117 (212)
T ss_dssp CTTSCHHHHHHHHHHHHHHHTTCC--------GGGCCCEEEECSSHHHHHHHHHHHHHHTTTSSCCEEEECCC--CHHHH
T ss_pred CCCCCCEEEEECHHHHHHHHCCCC--------CCCCCCEEEECCCHHHHHHHHHEECCCCCCCCCCEEEEEECCCHHHHH
T ss_conf 677774566643577633300233--------334420146534146665442100001345786338887146478888
Q ss_pred HHCCCCCCEEEE-----CCCCCCCCCC-CEEEEEEECC
Q ss_conf 410245747997-----1832234412-3069999618
Q gi|254780401|r 129 MLLQEGVDIIIM-----DDGFHSADLQ-ADFSLIVVNS 160 (338)
Q Consensus 129 ~~~~~~~diiIl-----DDGfQh~~l~-rdl~Ivl~d~ 160 (338)
.....++++++. .|..+...+. ..+..+++|.
T Consensus 118 ~~~~~~~~i~v~tp~~l~~~~~~~~~~l~~v~~lVlDE 155 (212)
T 2pl3_A 118 ERINNINILVCTPGRLLQHMDETVSFHATDLQMLVLDE 155 (212)
T ss_dssp HHHTTCSEEEECHHHHHHHHHHCSSCCCTTCCEEEETT
T ss_pred HHHCCCCEEEECCCCHHHHHHCCCCCCCCCEEEEECCC
T ss_conf 77547854763042010244315654345268975021
No 301
>>1ddg_A Sulfite reductase (NADPH) flavoprotein alpha- component; cytochrome P450 reductase, FNR, modular protein, oxidoreductase; HET: FAD; 2.01A {Escherichia coli} (A:223-374)
Probab=48.32 E-value=15 Score=16.98 Aligned_cols=34 Identities=26% Similarity=0.380 Sum_probs=23.0
Q ss_pred CCCEEEECCEEECCCCCCHHHHHHHHHHHHCCCCEEEE
Q ss_conf 89889982300078887489999999985247315987
Q gi|254780401|r 43 PIPVICVGGFVMGGTGKTPTALAIAKAVIDKNLKPGFL 80 (338)
Q Consensus 43 ~~pVI~VGNitvGGtGKTP~v~~l~~~l~~~g~~~~il 80 (338)
+-|+|. .+||||=||+...+-..+....-...++
T Consensus 5 ~~~ivl----iagG~GitP~~s~l~~~~~~~~~~~~~l 38 (152)
T 1ddg_A 5 ETPVIM----IGPGTGIAPFRAFMQQRAADEAPGKNWL 38 (152)
T ss_dssp TSCEEE----ECCGGGGHHHHHHHHHHHHHTCCSCEEE
T ss_pred CCCEEE----EECCCCCHHHHHHHHHHHHHCCCCCEEE
T ss_conf 665799----9368672379999999997168984899
No 302
>>2rc5_A Ferredoxin-NADP reductase; FAD, oxidoreductase; HET: FAD; 2.43A {Leptospira interrogans} PDB: 2rc6_A* (A:157-314)
Probab=48.23 E-value=13 Score=17.45 Aligned_cols=26 Identities=19% Similarity=0.184 Sum_probs=19.9
Q ss_pred CCEEEECCEEECCCCCCHHHHHHHHHHHHC
Q ss_conf 988998230007888748999999998524
Q gi|254780401|r 44 IPVICVGGFVMGGTGKTPTALAIAKAVIDK 73 (338)
Q Consensus 44 ~pVI~VGNitvGGtGKTP~v~~l~~~l~~~ 73 (338)
-+++. .+||||=||+...+-..++..
T Consensus 10 ~~~vl----iAgGtGitP~~s~l~~~~~~~ 35 (158)
T 2rc5_A 10 GDIMF----LATGTGIAPFIGMSEELLEHK 35 (158)
T ss_dssp SCEEE----EEEGGGGHHHHHHHHHHHTTC
T ss_pred CCEEE----EECCEEHHHHHHHHHHHHHHH
T ss_conf 86899----966762718999999999742
No 303
>>1eq2_A ADP-L-glycero-D-mannoheptose 6-epimerase; N-terminal domain rossmann fold, C-terminal mixed alpha/beta domain; HET: NAP ADQ; 2.00A {Escherichia coli} (A:)
Probab=48.16 E-value=18 Score=16.37 Aligned_cols=33 Identities=27% Similarity=0.346 Sum_probs=27.1
Q ss_pred EEECCCCCCHHHHHHHHHHHHCCCCEEEEEECCCC
Q ss_conf 00078887489999999985247315987604578
Q gi|254780401|r 52 FVMGGTGKTPTALAIAKAVIDKNLKPGFLSRGYGR 86 (338)
Q Consensus 52 itvGGtGKTP~v~~l~~~l~~~g~~~~ilsRGYg~ 86 (338)
+.+|||| =+=.+|++.|.++|+.+.++.|.-..
T Consensus 3 lVtG~tG--fiG~~lv~~L~~~g~~v~~~~r~~~~ 35 (310)
T 1eq2_A 3 IVTGGAG--FIGSNIVKALNDKGITDILVVDNLKD 35 (310)
T ss_dssp EEETTTS--HHHHHHHHHHHTTTCCCEEEEECCSS
T ss_pred EEECCCC--HHHHHHHHHHHHCCCCEEEEEECCCC
T ss_conf 9973887--89999999998589977999957986
No 304
>>2i1q_A DNA repair and recombination protein RADA; ATPase, recombinase, ATP complex, calcium stimulation, RECA, DMC1; HET: DNA ANP; 1.90A {Methanococcus voltae} (A:65-322)
Probab=47.97 E-value=4.9 Score=20.43 Aligned_cols=28 Identities=14% Similarity=-0.056 Sum_probs=24.1
Q ss_pred CCCCCCHHHHHHHHHHHHCCCCEEEEEE
Q ss_conf 7888748999999998524731598760
Q gi|254780401|r 55 GGTGKTPTALAIAKAVIDKNLKPGFLSR 82 (338)
Q Consensus 55 GGtGKTP~v~~l~~~l~~~g~~~~ilsR 82 (338)
-|+|||.++.-++......|.+++.+|-
T Consensus 43 pG~GKT~l~~q~~~~~~~~~~~~~~~~~ 70 (258)
T 2i1q_A 43 FGSGKTQIMHQSCVNLQNPEFLFYDEEA 70 (258)
T ss_dssp TTSSHHHHHHHHHHHTTCGGGEECCTTT
T ss_pred CCCCHHHHHHHHHHHHHHCCCCEEEEEE
T ss_conf 9974788999999999844895699962
No 305
>>2jaq_A Deoxyguanosine kinase; transferase, deoxyribonucleoside kinase; HET: DCP; 2.3A {Mycoplasma mycoides subsp} PDB: 2jat_A* 2jas_A* (A:)
Probab=47.96 E-value=3.8 Score=21.19 Aligned_cols=28 Identities=21% Similarity=0.196 Sum_probs=21.0
Q ss_pred CCCCCCHHHHHHHHHHHHCCCCEEEEEE
Q ss_conf 7888748999999998524731598760
Q gi|254780401|r 55 GGTGKTPTALAIAKAVIDKNLKPGFLSR 82 (338)
Q Consensus 55 GGtGKTP~v~~l~~~l~~~g~~~~ilsR 82 (338)
-|+|||-++..|++.|...++.+....+
T Consensus 9 ~GsGKtTla~~L~~~l~~~~i~~~~~~~ 36 (205)
T 2jaq_A 9 VGAGKSTISAEISKKLGYEIFKEPVEEN 36 (205)
T ss_dssp TTSCHHHHHHHHHHHHCCEEECCCGGGC
T ss_pred CCCCHHHHHHHHHHHHCCCEEEECCCCC
T ss_conf 8888999999999985996698578887
No 306
>>3a4m_A L-seryl-tRNA(SEC) kinase; P-loop motif, walker A motif, ATP binding motif, ATP- binding, nucleotide-binding, transferase; HET: ADP; 1.79A {Methanocaldococcus jannaschii} PDB: 3a4l_A* 3a4n_A (A:1-182)
Probab=47.87 E-value=15 Score=17.01 Aligned_cols=29 Identities=24% Similarity=0.343 Sum_probs=23.7
Q ss_pred ECCCCCCHHHHHHHHHHHHCCCCEEEEEE
Q ss_conf 07888748999999998524731598760
Q gi|254780401|r 54 MGGTGKTPTALAIAKAVIDKNLKPGFLSR 82 (338)
Q Consensus 54 vGGtGKTP~v~~l~~~l~~~g~~~~ilsR 82 (338)
.=|+|||-+...|++.|......+.++.+
T Consensus 12 ~sGsGKSTl~r~L~~~l~~~~~~~~~~~~ 40 (182)
T 3a4m_A 12 LPGVGKSTFSKNLAKILSKNNIDVIVLGS 40 (182)
T ss_dssp CTTSSHHHHHHHHHHHHHHTTCCEEEECT
T ss_pred CCCCCHHHHHHHHHHHHHHCCCCEEEECC
T ss_conf 99998999999999998742999599782
No 307
>>2jeo_A Uridine-cytidine kinase 1; UCK, transferase, ATP-binding, nucleoside kinase, nucleotide-binding; 2.50A {Homo sapiens} PDB: 2uvq_A* (A:1-70,A:135-245)
Probab=47.57 E-value=15 Score=17.04 Aligned_cols=36 Identities=25% Similarity=0.227 Sum_probs=23.9
Q ss_pred CEEEECCEEECCCCCCHHHHHHHHHHHHCC-----CCEEEEEE
Q ss_conf 889982300078887489999999985247-----31598760
Q gi|254780401|r 45 PVICVGGFVMGGTGKTPTALAIAKAVIDKN-----LKPGFLSR 82 (338)
Q Consensus 45 pVI~VGNitvGGtGKTP~v~~l~~~l~~~g-----~~~~ilsR 82 (338)
.||+|.- .-|+|||-++..|++.|.... ...+.+|.
T Consensus 26 ~~i~i~G--~~gsGKsT~a~~l~~~~~~~~~~~~~~~~~~~~~ 66 (181)
T 2jeo_A 26 FLIGVSG--GTASGKSTVCEKIMELLGQNEVEQRQRKVVILSQ 66 (181)
T ss_dssp EEEEEEC--STTSSHHHHHHHHHHHHTGGGSCGGGCSEEEEEG
T ss_pred EEEEEEC--CCCCCHHHHHHHHHHHHCCCEECCCCCEEEEECC
T ss_conf 8999789--9866499999999999685722678605899727
No 308
>>3i0z_A Putative tagatose-6-phosphate ketose/aldose isomerase; NP_344614.1, structural genomics, joint center for structural genomics; HET: MSE; 1.70A {Streptococcus pneumoniae TIGR4} (A:55-173)
Probab=47.51 E-value=19 Score=16.30 Aligned_cols=32 Identities=16% Similarity=0.203 Sum_probs=22.2
Q ss_pred CCCCCCHHHHHHHHHHHH--CCCCEEEEEECCCC
Q ss_conf 788874899999999852--47315987604578
Q gi|254780401|r 55 GGTGKTPTALAIAKAVID--KNLKPGFLSRGYGR 86 (338)
Q Consensus 55 GGtGKTP~v~~l~~~l~~--~g~~~~ilsRGYg~ 86 (338)
--+|+||-++.+++++++ +|.++..++-...+
T Consensus 63 S~sG~t~~~~~~~~~ak~~~~g~~vIaiT~~~~s 96 (119)
T 3i0z_A 63 ARSGNSPESLATVDLAKSLVDELYQVTITCAADG 96 (119)
T ss_dssp ESSSCCHHHHHHHHHHHHHCSSEEEEEEESCTTS
T ss_pred CCCCCCHHHHHHHHHHHHHCCCCCEECCCCCCCC
T ss_conf 4785878999999999985778764033058897
No 309
>>2rgx_A Adenylate kinase; transferase(phosphotransferase), ATP-binding, cytoplasm, nucleotide-binding; HET: AP5; 1.90A {Aquifex aeolicus} PDB: 2rh5_A (A:1-112,A:171-206)
Probab=47.50 E-value=9.1 Score=18.53 Aligned_cols=18 Identities=33% Similarity=0.220 Sum_probs=14.6
Q ss_pred CCCCCCHHHHHHHHHHHH
Q ss_conf 788874899999999852
Q gi|254780401|r 55 GGTGKTPTALAIAKAVID 72 (338)
Q Consensus 55 GGtGKTP~v~~l~~~l~~ 72 (338)
-|+|||-++..||+.+.-
T Consensus 9 pGSGKTTlAk~LA~~lg~ 26 (148)
T 2rgx_A 9 PGAGKGTQAKRLAKEKGF 26 (148)
T ss_dssp TTSSHHHHHHHHHHHHCC
T ss_pred CCCCHHHHHHHHHHHHCC
T ss_conf 999879999999998799
No 310
>>1ly1_A Polynucleotide kinase; PNK, phosphatase, transferase; 2.00A {Enterobacteria phage T4} (A:1-114)
Probab=47.32 E-value=11 Score=18.06 Aligned_cols=24 Identities=21% Similarity=0.084 Sum_probs=15.6
Q ss_pred CCCCCCHHHHHHHHHHHHCCCCEEEEEE
Q ss_conf 7888748999999998524731598760
Q gi|254780401|r 55 GGTGKTPTALAIAKAVIDKNLKPGFLSR 82 (338)
Q Consensus 55 GGtGKTP~v~~l~~~l~~~g~~~~ilsR 82 (338)
=|+|||-++..|++.+ -.+.++|.
T Consensus 11 pGsGKTT~a~~L~~~~----~~~~~~~~ 34 (114)
T 1ly1_A 11 PGSGKSTWAREFIAKN----PGFYNINR 34 (114)
T ss_dssp TTSSHHHHHHHHHHHS----TTEEEECH
T ss_pred CCCCHHHHHHHHHHHC----CCCEEEEC
T ss_conf 9999899999999848----99799851
No 311
>>1aw2_A Triosephosphate isomerase; psychrophilic; 2.65A {Vibrio marinus} (A:)
Probab=47.13 E-value=4.8 Score=20.48 Aligned_cols=20 Identities=15% Similarity=0.179 Sum_probs=11.5
Q ss_pred EEEEECCCCHHHHHHHHHHH
Q ss_conf 89874155357899988740
Q gi|254780401|r 225 VLAFSGIADTEKFFTTVRQL 244 (338)
Q Consensus 225 v~afsGIa~P~~F~~~L~~~ 244 (338)
+++=+++=+|+.|.+.++..
T Consensus 232 vLvG~asl~~~~f~~ii~~~ 251 (256)
T 1aw2_A 232 ALVGGAALDAKSFAAIAKAA 251 (256)
T ss_dssp EEESGGGGCHHHHHHHHHHH
T ss_pred EEECHHHCCHHHHHHHHHHH
T ss_conf 99536766989999999999
No 312
>>1m7g_A Adenylylsulfate kinase; APS kinase, transferase, sulfate metabolism, nucleotide 2 kinase; HET: AV2 ADX ADP; 1.43A {Penicillium chrysogenum} (A:)
Probab=47.03 E-value=11 Score=17.92 Aligned_cols=30 Identities=13% Similarity=0.281 Sum_probs=24.9
Q ss_pred CCCCCCHHHHHHHHHHHHCCCCEEEEEECC
Q ss_conf 788874899999999852473159876045
Q gi|254780401|r 55 GGTGKTPTALAIAKAVIDKNLKPGFLSRGY 84 (338)
Q Consensus 55 GGtGKTP~v~~l~~~l~~~g~~~~ilsRGY 84 (338)
-|+|||-++..|++.|.-..+....+.|+.
T Consensus 34 ~GsGKsTva~~La~~lg~~~i~~~~~~~~~ 63 (211)
T 1m7g_A 34 SASGKSTLAVELEHQLVRDRRVHAYRLDGD 63 (211)
T ss_dssp TTSSHHHHHHHHHHHHHHHHCCCEEEECHH
T ss_pred CCCCHHHHHHHHHHHHHHHCCCCEEEECCH
T ss_conf 999989999999999998639988997538
No 313
>>2r6j_A Eugenol synthase 1; phenylpropene, PIP reductase, short-chain dehydrogenase/reductase, plant protein; HET: NDP; 1.50A {Ocimum basilicum} PDB: 2qys_A 2qx7_A* 2qzz_A* 2r2g_A* 3c3x_A* 2qw8_A* (A:)
Probab=46.96 E-value=19 Score=16.25 Aligned_cols=69 Identities=12% Similarity=0.062 Sum_probs=38.2
Q ss_pred CCEEEEEECCCCHHHHHHHHHHHC-CCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCE-EEECHHHHHHCC
Q ss_conf 863898741553578999887401-000012214332348989999999975647987-998546634382
Q gi|254780401|r 222 GKKVLAFSGIADTEKFFTTVRQLG-ALIEQCYSFGDHAHLSDKKIAYLLDQAQQKGLI-LVTTAKDAMRLH 290 (338)
Q Consensus 222 ~k~v~afsGIa~P~~F~~~L~~~g-~~i~~~~~fpDHh~ys~~dl~~i~~~a~~~~~~-iiTTEKD~VKL~ 290 (338)
+....-++-+.+=......+-... ..-.+.....+...++..|+.+...++...... ..+...|.-++.
T Consensus 182 ~~~~~~~i~v~D~a~~~~~~l~~~~~~~~~~~~i~~~~~~s~~e~~~~~~~~~g~~~~~~~~~~~~~~~~~ 252 (318)
T 2r6j_A 182 GEAKFAMNYEQDIGLYTIKVATDPRALNRVVIYRPSTNIITQLELISRWEKKIGKKFKKIHVPEEEIVALT 252 (318)
T ss_dssp SCCEEEEECHHHHHHHHHHHTTCGGGTTEEEECCCGGGEEEHHHHHHHHHHHHTCCCEEEEECHHHHHHHH
T ss_pred CCCCCCEEEHHHHHHHHHHHHCCHHHHCCEEEEECCCCCCCHHHHHHHHHHHHCCCCCEEECCHHHHHHHH
T ss_conf 34546424599999999998348063298799718998425999999999997998828988999999998
No 314
>>1e6u_A GDP-fucose synthetase; epimerase/reductase, SDR, RED; HET: NAP; 1.45A {Escherichia coli} (A:)
Probab=46.63 E-value=19 Score=16.21 Aligned_cols=34 Identities=18% Similarity=0.154 Sum_probs=28.5
Q ss_pred EEECCCCCCHHHHHHHHHHHHCCCCEEEEEECCCCC
Q ss_conf 000788874899999999852473159876045787
Q gi|254780401|r 52 FVMGGTGKTPTALAIAKAVIDKNLKPGFLSRGYGRK 87 (338)
Q Consensus 52 itvGGtGKTP~v~~l~~~l~~~g~~~~ilsRGYg~~ 87 (338)
+.+|||| -+=.+|++.|.++|+.+.+..|+....
T Consensus 7 LVtGatG--fiG~~lv~~L~~~g~~v~~~~r~~~~~ 40 (321)
T 1e6u_A 7 FIAGHRG--MVGSAIRRQLEQRGDVELVLRTRDELN 40 (321)
T ss_dssp EEETTTS--HHHHHHHHHHTTCTTEEEECCCTTTCC
T ss_pred EEECCCC--HHHHHHHHHHHHCCCEEEEECCCHHCC
T ss_conf 9987998--899999999997869899966713414
No 315
>>3dkp_A Probable ATP-dependent RNA helicase DDX52; DEAD, ADP, structural genomics, structural genomics consortium, SGC, rRNA, ATP-binding, hydrolase; HET: ADP; 2.10A {Homo sapiens} (A:)
Probab=46.59 E-value=12 Score=17.62 Aligned_cols=96 Identities=14% Similarity=0.054 Sum_probs=45.0
Q ss_pred ECCCCCCHHH-HHHHHHHHHCCCCEEEEEECCCCCCCCCEEEECCCCCHHHHCCHHHHHHHCCCCC-----CCCCHHHHH
Q ss_conf 0788874899-9999998524731598760457877775587145678877042123322057634-----652012256
Q gi|254780401|r 54 MGGTGKTPTA-LAIAKAVIDKNLKPGFLSRGYGRKSRISFRVDLEKHSAYDVGDEPLLLARRAVTI-----VTSDRKIGV 127 (338)
Q Consensus 54 vGGtGKTP~v-~~l~~~l~~~g~~~~ilsRGYg~~~~~~~~v~~~~~~~~~vGDEp~lla~~~pv~-----V~~~R~~~~ 127 (338)
-=|||||=.- +-+...+.....+ ....+++.+...-+.++-++...++....+. .+.......
T Consensus 74 ~TGSGKTlaflip~l~~~~~~~~~-----------~~~alIl~PTrELa~qi~~~~~~~~~~~~~~~~~~~~g~~~~~~~ 142 (245)
T 3dkp_A 74 PTGSGKTLAFSIPILMQLKQPANK-----------GFRALIISPTRELASQIHRELIKISEGTGFRIHMIHKAAVAAKKF 142 (245)
T ss_dssp CTTSCHHHHHHHHHHHHHCSCCSS-----------SCCEEEECSSHHHHHHHHHHHHHHTTTSCCCEECCCHHHHHHTTT
T ss_pred CCCCCEEEEEEEHHHHHHHHCCCC-----------CCEEEEECCCCCCCCEEEEECCCCCCCCEEEECCCCCCCCCCHHH
T ss_conf 355433666510566542320478-----------835999568744132023210233321000001222222331035
Q ss_pred HHHCCCCCCEEEECCCCCCC-------C-CCCEEEEEEECC
Q ss_conf 64102457479971832234-------4-123069999618
Q gi|254780401|r 128 QMLLQEGVDIIIMDDGFHSA-------D-LQADFSLIVVNS 160 (338)
Q Consensus 128 ~~~~~~~~diiIlDDGfQh~-------~-l~rdl~Ivl~d~ 160 (338)
....+.++++++.-.|--.. . --+++..+++|-
T Consensus 143 ~~~~~~~~~i~i~t~~~~~~~~~~~~~~~~l~~v~~lVlDE 183 (245)
T 3dkp_A 143 GPKSSKKFDILVTTPNRLIYLLKQDPPGIDLASVEWLVVDE 183 (245)
T ss_dssp STTSCCCCCEEEECHHHHHHHHHSSSCSCCCTTCCEEEESS
T ss_pred HHHHCCCCCEEEEHHHHHHHHHHHHHHHHHHHHEEEEECHH
T ss_conf 67652588614421256688876402212243101440011
No 316
>>1rkb_A Protein AD-004, protein CGI-137; five-stranded parallel beta-sheet flanked by 7 alpha- helices, transferase; 2.00A {Homo sapiens} (A:)
Probab=46.55 E-value=9.6 Score=18.36 Aligned_cols=23 Identities=26% Similarity=0.346 Sum_probs=16.8
Q ss_pred EEEECCEEECCCCCCHHHHHHHHHHH
Q ss_conf 89982300078887489999999985
Q gi|254780401|r 46 VICVGGFVMGGTGKTPTALAIAKAVI 71 (338)
Q Consensus 46 VI~VGNitvGGtGKTP~v~~l~~~l~ 71 (338)
|+.+|. -|+|||-++.+|++.|.
T Consensus 7 I~i~G~---~GsGKtTla~~La~~l~ 29 (173)
T 1rkb_A 7 ILLTGT---PGVGKTTLGKELASKSG 29 (173)
T ss_dssp EEEECS---TTSSHHHHHHHHHHHHC
T ss_pred EEEECC---CCCCHHHHHHHHHHHHC
T ss_conf 989889---99998999999999979
No 317
>>1qf9_A UMP/CMP kinase, protein (uridylmonophosphate/cytidylmonophosphate kinase); nucleoside monophosphate kinase, NMP kinase; HET: ADP C5P; 1.70A {Dictyostelium discoideum} (A:)
Probab=46.54 E-value=7.7 Score=19.05 Aligned_cols=22 Identities=23% Similarity=0.226 Sum_probs=17.2
Q ss_pred CCCCCCHHHHHHHHHHHHCCCC
Q ss_conf 7888748999999998524731
Q gi|254780401|r 55 GGTGKTPTALAIAKAVIDKNLK 76 (338)
Q Consensus 55 GGtGKTP~v~~l~~~l~~~g~~ 76 (338)
-|+|||-++..|++.|....+.
T Consensus 15 ~GsGKTT~a~~La~~l~~~~i~ 36 (194)
T 1qf9_A 15 PGSGKGTQCANIVRDFGWVHLS 36 (194)
T ss_dssp TTSSHHHHHHHHHHHHCCEEEE
T ss_pred CCCCHHHHHHHHHHHHCCCEEC
T ss_conf 9998899999999996994576
No 318
>>3e48_A Putative nucleoside-diphosphate-sugar epimerase; alpha-beta protein., structural genomics, PSI-2, protein structure initiative; 1.60A {Staphylococcus aureus subsp} (A:)
Probab=46.49 E-value=19 Score=16.20 Aligned_cols=67 Identities=9% Similarity=0.039 Sum_probs=38.3
Q ss_pred CCCEEEEEECCCCHHHHHHHHHHHCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCEEEECHHHHHH
Q ss_conf 68638987415535789998874010000122143323489899999999756479879985466343
Q gi|254780401|r 221 SGKKVLAFSGIADTEKFFTTVRQLGALIEQCYSFGDHAHLSDKKIAYLLDQAQQKGLILVTTAKDAMR 288 (338)
Q Consensus 221 ~~k~v~afsGIa~P~~F~~~L~~~g~~i~~~~~fpDHh~ys~~dl~~i~~~a~~~~~~iiTTEKD~VK 288 (338)
.+.....+.-+.+-......+-..+.. ......-.....+..++.++..++......++....+..+
T Consensus 164 ~~~~~~~~v~~~d~a~~~~~~~~~~~~-~~~~~~~~~~~~t~~~~~~~~~~~~g~~~~~~~~~~~~~~ 230 (289)
T 3e48_A 164 AGDGRINYITRNDIARGVIAIIKNPDT-WGKRYLLSGYSYDXKELAAILSEASGTEIKYEPVSLETFA 230 (289)
T ss_dssp CTTCEEEEECHHHHHHHHHHHHHCGGG-TTCEEEECCEEEEHHHHHHHHHHHHTSCCEECCCCHHHHH
T ss_pred EECCCCCCEEHHHHHHHHHHHHHCCCC-CCEEEEECCCCCCHHHHHHHHHHHHCCCCEEEECCHHHHH
T ss_conf 202455852499999999986508555-4407996698788899999999998980238978999999
No 319
>>2hun_A 336AA long hypothetical DTDP-glucose 4,6- dehydratase; rossmann fold, structural genomics, NPPSFA; HET: NAD; 2.07A {Pyrococcus horikoshii OT3} (A:)
Probab=46.29 E-value=20 Score=16.18 Aligned_cols=33 Identities=15% Similarity=0.182 Sum_probs=27.2
Q ss_pred EEECCCCCCHHHHHHHHHHHHCCCCEEEEEECCCC
Q ss_conf 00078887489999999985247315987604578
Q gi|254780401|r 52 FVMGGTGKTPTALAIAKAVIDKNLKPGFLSRGYGR 86 (338)
Q Consensus 52 itvGGtGKTP~v~~l~~~l~~~g~~~~ilsRGYg~ 86 (338)
+.+|||| -+=.+|++.|.++|+.+.+++|....
T Consensus 7 lItGatG--~iG~~lv~~Ll~~g~~v~~~~~~~~~ 39 (336)
T 2hun_A 7 LVTGGMG--FIGSNFIRYILEKHPDWEVINIDKLG 39 (336)
T ss_dssp EEETTTS--HHHHHHHHHHHHHCTTCEEEEEECCC
T ss_pred EEECCCC--HHHHHHHHHHHHCCCCCEEEEEECCC
T ss_conf 9966877--89999999999669997899995798
No 320
>>1jr3_A DNA polymerase III subunit gamma; processivity, processivity clamp, clamp loader, AAA+ ATPase, transferase; HET: DNA; 2.70A {Escherichia coli} (A:1-177)
Probab=46.13 E-value=9.8 Score=18.29 Aligned_cols=33 Identities=24% Similarity=0.188 Sum_probs=23.9
Q ss_pred CCCCCCCCEEEECCEEECCCCCCHHHHHHHHHHHHC
Q ss_conf 643388988998230007888748999999998524
Q gi|254780401|r 38 QRLHAPIPVICVGGFVMGGTGKTPTALAIAKAVIDK 73 (338)
Q Consensus 38 ~~~~~~~pVI~VGNitvGGtGKTP~v~~l~~~l~~~ 73 (338)
+..+.|--++-.|- -|||||-++..+++.+...
T Consensus 33 ~~~~~~~~~Ll~Gp---pG~GKT~~A~~la~~~~~~ 65 (177)
T 1jr3_A 33 SLGRIHHAYLFSGT---RGVGKTSIARLLAKGLNCE 65 (177)
T ss_dssp HHTCCCSEEEEESC---TTSSHHHHHHHHHHHHSCT
T ss_pred HCCCCCCEEEEECC---CCCCHHHHHHHHHHHHCCC
T ss_conf 86997723765799---9987999999999996787
No 321
>>2gk4_A Conserved hypothetical protein; alpha-beta-alpha sandwich, flavoprotein, structural genomics, PSI, protein structure initiative; 1.83A {Streptococcus pneumoniae TIGR4} (A:)
Probab=46.01 E-value=9.7 Score=18.34 Aligned_cols=33 Identities=15% Similarity=0.306 Sum_probs=28.9
Q ss_pred CEEEECCEEECCCCCCHHHHHHHHHHHHCCCCEEEEEE
Q ss_conf 88998230007888748999999998524731598760
Q gi|254780401|r 45 PVICVGGFVMGGTGKTPTALAIAKAVIDKNLKPGFLSR 82 (338)
Q Consensus 45 pVI~VGNitvGGtGKTP~v~~l~~~l~~~g~~~~ilsR 82 (338)
||=+|.|.+.|.+|. +||+.+..+|+.|..+++
T Consensus 19 ~VR~ItN~SSGk~G~-----~lA~~~~~~Ga~V~li~g 51 (232)
T 2gk4_A 19 SVRSITNHSTGHLGK-----IITETLLSAGYEVCLITT 51 (232)
T ss_dssp SSEEEEECCCCHHHH-----HHHHHHHHTTCEEEEEEC
T ss_pred CCCEECCCCCHHHHH-----HHHHHHHHCCCEEEEEEC
T ss_conf 821668369669999-----999999978998999955
No 322
>>2dwc_A PH0318, 433AA long hypothetical phosphoribosylglycinamide formyl transferase; purine ribonucleotide biosynthesis, PURT; HET: ADP; 1.70A {Pyrococcus horikoshii OT3} PDB: 2czg_A* (A:1-108)
Probab=45.98 E-value=20 Score=16.14 Aligned_cols=61 Identities=10% Similarity=0.098 Sum_probs=24.3
Q ss_pred EEEECCCCHHH-HHHHHHHHCCCCCCCCC--------CCCCC-CCCHHHHHHHHHHHHHCCCEEEECHHHH
Q ss_conf 98741553578-99988740100001221--------43323-4898999999997564798799854663
Q gi|254780401|r 226 LAFSGIADTEK-FFTTVRQLGALIEQCYS--------FGDHA-HLSDKKIAYLLDQAQQKGLILVTTAKDA 286 (338)
Q Consensus 226 ~afsGIa~P~~-F~~~L~~~g~~i~~~~~--------fpDHh-~ys~~dl~~i~~~a~~~~~~iiTTEKD~ 286 (338)
+++.|-|...+ +....+++|++++-.-. ..||+ .-+-.|.+.+.+.|++.+...||+|=.+
T Consensus 22 ilIlG~Gqla~~l~~aa~~lG~~~~~~d~~~~~pa~~~ad~~~~~~~~D~~~i~~~a~~~~~D~I~~e~e~ 92 (108)
T 2dwc_A 22 ILLLGSGELGKEIAIEAQRLGVEVVAVDRYANAPAMQVAHRSYVGNMMDKDFLWSVVEREKPDAIIPEIEA 92 (108)
T ss_dssp EEEESCSHHHHHHHHHHHHTTCEEEEEESSTTCHHHHHSSEEEESCTTCHHHHHHHHHHHCCSEEEECSSC
T ss_pred EEEECCCHHHHHHHHHHHHCCCEEEEEECCCCCCHHHHCCEEEECCCCCHHHHHHHHHHCCCCEEEECCCC
T ss_conf 99999789999999999987998999979898857774565897899999999999987399999968887
No 323
>>2z1m_A GDP-D-mannose dehydratase; short-chain dehydrogenase/reductase, lyase, structural genomics, NPPSFA; HET: NDP GDP; 2.00A {Aquifex aeolicus VF5} PDB: 2z95_A* (A:1-178)
Probab=45.82 E-value=20 Score=16.13 Aligned_cols=30 Identities=20% Similarity=0.237 Sum_probs=25.0
Q ss_pred EEECCCCCCHHHHHHHHHHHHCCCCEEEEEEC
Q ss_conf 00078887489999999985247315987604
Q gi|254780401|r 52 FVMGGTGKTPTALAIAKAVIDKNLKPGFLSRG 83 (338)
Q Consensus 52 itvGGtGKTP~v~~l~~~l~~~g~~~~ilsRG 83 (338)
+.+|||| -+=.+|++.|.+.|+.+.++.|-
T Consensus 7 lVTGatG--~iG~~l~~~L~~~g~~v~~~~~~ 36 (178)
T 2z1m_A 7 LITGIRG--QDGAYLAKLLLEKGYEVYGADRR 36 (178)
T ss_dssp EEETTTS--HHHHHHHHHHHHTTCEEEEECSC
T ss_pred EEECCCC--HHHHHHHHHHHHCCCEEEEEECC
T ss_conf 9978886--89999999999783989999799
No 324
>>3eme_A Rhodanese-like domain protein; alpha-beta-alpha sandwich, structural genomics; 2.00A {Staphylococcus aureus subsp} PDB: 3iwh_A (A:)
Probab=45.62 E-value=13 Score=17.52 Aligned_cols=82 Identities=13% Similarity=0.147 Sum_probs=40.4
Q ss_pred HHHHHHHHHHCCCCEEEE-EECC----CCCCCCCEEEECCCCCHHHHCCHHHHHHHCCCC-CCCC--CHHH-HHHHHCCC
Q ss_conf 999999985247315987-6045----787777558714567887704212332205763-4652--0122-56641024
Q gi|254780401|r 63 ALAIAKAVIDKNLKPGFL-SRGY----GRKSRISFRVDLEKHSAYDVGDEPLLLARRAVT-IVTS--DRKI-GVQMLLQE 133 (338)
Q Consensus 63 v~~l~~~l~~~g~~~~il-sRGY----g~~~~~~~~v~~~~~~~~~vGDEp~lla~~~pv-~V~~--~R~~-~~~~~~~~ 133 (338)
+..+.+.+.+ +-+..+| -|.= .+...|...+. ..+.-+....+.+.-++ ++|. .|.. ++..+.+.
T Consensus 6 ~~e~~~~l~~-~~~~~iiDvR~~~e~~~~hipga~~~p-----~~~~~~~~~~~~~~~~iv~~c~~g~rs~~~a~~l~~~ 79 (103)
T 3eme_A 6 TDELKNKLLE-SKPVQIVDVRTDEETAXGYIPNAKLIP-----XDTIPDNLNSFNKNEIYYIVCAGGVRSAKVVEYLEAN 79 (103)
T ss_dssp HHHHHHGGGS-SSCCEEEECSCHHHHTTCBCTTCEECC-----GGGGGGCGGGCCTTSEEEEECSSSSHHHHHHHHHHTT
T ss_pred HHHHHHHHHC-CCCEEEEECCCHHHHHCCCCCCCCCCC-----CCCHHHHHHHHCCCCCCEEECCCCHHHHHHHHHHHHC
T ss_conf 9999999867-998299988882563357258861212-----2000112211012345100579965499999999986
Q ss_pred CCCEEEECCCCCCCCCC
Q ss_conf 57479971832234412
Q gi|254780401|r 134 GVDIIIMDDGFHSADLQ 150 (338)
Q Consensus 134 ~~diiIlDDGfQh~~l~ 150 (338)
+.++.+||+|+..+.-.
T Consensus 80 G~~v~~l~GG~~aW~~~ 96 (103)
T 3eme_A 80 GIDAVNVEGGXHAWGDE 96 (103)
T ss_dssp TCEEEEETTHHHHHCSS
T ss_pred CCCEEEECCHHHHHHHC
T ss_conf 99779977819999987
No 325
>>1xwi_A SKD1 protein; VPS4B, AAA ATPase, protein transport; 2.80A {Homo sapiens} (A:1-178)
Probab=45.61 E-value=14 Score=17.27 Aligned_cols=36 Identities=25% Similarity=0.151 Sum_probs=24.9
Q ss_pred CCCCEEEECCEEECCCCCCHHHHHHHHHHHHCCCCEEEEEEC
Q ss_conf 889889982300078887489999999985247315987604
Q gi|254780401|r 42 APIPVICVGGFVMGGTGKTPTALAIAKAVIDKNLKPGFLSRG 83 (338)
Q Consensus 42 ~~~pVI~VGNitvGGtGKTP~v~~l~~~l~~~g~~~~ilsRG 83 (338)
.|--++..|- -|||||-++.++|..+. .....++-|
T Consensus 44 ~~~g~Ll~Gp---PGtGKT~~a~a~A~~~~---~~~~~~~~~ 79 (178)
T 1xwi_A 44 PWRGILLFGP---PGTGKSYLAKAVATEAN---NSTFFSISS 79 (178)
T ss_dssp CCSEEEEESS---SSSCHHHHHHHHHHHTT---SCEEEEEEC
T ss_pred CCCEEEEECC---CCCCHHHHHHHHHHHCC---CCCEEEEEH
T ss_conf 9980688798---99988999999998707---884246567
No 326
>>2o0j_A Terminase, DNA packaging protein GP17; nucleotide-binding fold, hydrolase; HET: DNA ADP; 1.80A {Enterobacteria phage T4} PDB: 2o0h_A* 2o0k_A* (A:165-385)
Probab=45.38 E-value=20 Score=16.14 Aligned_cols=27 Identities=22% Similarity=0.310 Sum_probs=18.9
Q ss_pred CCCCCCHHHHHHHHHHH--HCCCCEEEEE
Q ss_conf 78887489999999985--2473159876
Q gi|254780401|r 55 GGTGKTPTALAIAKAVI--DKNLKPGFLS 81 (338)
Q Consensus 55 GGtGKTP~v~~l~~~l~--~~g~~~~ils 81 (338)
=|+|||=+...++..+. ..|.++.|+.
T Consensus 23 tGsGKT~~~~~~~~~~l~~~~~~~vli~~ 51 (221)
T 2o0j_A 23 RQLGKTTVVAIFLAHFVCFNKDKAVGILA 51 (221)
T ss_dssp SSSCHHHHHHHHHHHHHHSSSSCEEEEEE
T ss_pred CCCCEEEEHHHHHHHHHHHCCCCEEEEEE
T ss_conf 54441222388999998706663147860
No 327
>>1sxj_B Activator 1 37 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ ATPase, DNA polymerase; HET: ATG ADP; 2.85A {Saccharomyces cerevisiae} (B:1-166)
Probab=45.37 E-value=10 Score=18.16 Aligned_cols=26 Identities=27% Similarity=0.431 Sum_probs=20.0
Q ss_pred CEEEECCEEECCCCCCHHHHHHHHHHHHC
Q ss_conf 88998230007888748999999998524
Q gi|254780401|r 45 PVICVGGFVMGGTGKTPTALAIAKAVIDK 73 (338)
Q Consensus 45 pVI~VGNitvGGtGKTP~v~~l~~~l~~~ 73 (338)
.++..|.- |+|||.++.++|..+...
T Consensus 44 ~~ll~Gp~---G~GKt~~a~~~a~~l~~~ 69 (166)
T 1sxj_B 44 HMIISGMP---GIGKTTSVHCLAHELLGR 69 (166)
T ss_dssp CEEEECST---TSSHHHHHHHHHHHHHGG
T ss_pred EEEEECCC---CCCHHHHHHHHHHHHCCC
T ss_conf 69988949---998999999999986699
No 328
>>2a9o_A Response regulator; essential protein, YYCF/YYCG homolog, signaling protein; 1.65A {Streptococcus pneumoniae} (A:)
Probab=45.18 E-value=20 Score=16.06 Aligned_cols=26 Identities=23% Similarity=0.350 Sum_probs=16.6
Q ss_pred CCCCCCCHHHHHHHHCCCCCCEEEEC
Q ss_conf 63465201225664102457479971
Q gi|254780401|r 116 VTIVTSDRKIGVQMLLQEGVDIIIMD 141 (338)
Q Consensus 116 pv~V~~~R~~~~~~~~~~~~diiIlD 141 (338)
-|..+.+-.+|...+.+..+|+||+|
T Consensus 27 ~v~~a~~~~~al~~l~~~~~dliilD 52 (120)
T 2a9o_A 27 EVVTAFNGREALEQFEAEQPDIIILD 52 (120)
T ss_dssp EEEEESSHHHHHHHHHHHCCSEEEEC
T ss_pred EEEEECCHHHHHHHHHHCCCCEEEEC
T ss_conf 99998787999999983699789842
No 329
>>2obl_A ESCN; ATPase, hydrolase; 1.80A {Escherichia coli O127} PDB: 2obm_A* (A:1-271)
Probab=45.12 E-value=19 Score=16.24 Aligned_cols=30 Identities=23% Similarity=0.210 Sum_probs=18.8
Q ss_pred CCEEECCCCCCHHHHHHHHHHHHCCCCEEEE
Q ss_conf 2300078887489999999985247315987
Q gi|254780401|r 50 GGFVMGGTGKTPTALAIAKAVIDKNLKPGFL 80 (338)
Q Consensus 50 GNitvGGtGKTP~v~~l~~~l~~~g~~~~il 80 (338)
|=+.-=|+|||-+...+++.... ++.+..+
T Consensus 75 ~I~a~~g~GKT~ll~~ia~~~~~-~~~v~~~ 104 (271)
T 2obl_A 75 GIFAGSGVGKSTLLGMICNGASA-DIIVLAL 104 (271)
T ss_dssp EEEECTTSSHHHHHHHHHHHSCC-SEEEEEE
T ss_pred CCCCCCCCCHHHHHHHHCCCCCC-CCEEEEE
T ss_conf 34688887688886542010248-8630046
No 330
>>3eph_A TRNA isopentenyltransferase; transferase, alternative initiation, ATP-binding, cytoplasm, mitochondrion, nucleotide-binding, nucleus; 2.95A {Saccharomyces cerevisiae} PDB: 3epj_A 3epk_A* 3epl_A* (A:1-111,A:185-343)
Probab=45.01 E-value=11 Score=18.06 Aligned_cols=129 Identities=19% Similarity=0.205 Sum_probs=59.5
Q ss_pred EEEECCEEECCCCCCHHHHHHHHHHHHCCCCEEEEEE----CCCCCCCCCEEEECCCCCHHHHCCHHHHHH-HCCC---C
Q ss_conf 8998230007888748999999998524731598760----457877775587145678877042123322-0576---3
Q gi|254780401|r 46 VICVGGFVMGGTGKTPTALAIAKAVIDKNLKPGFLSR----GYGRKSRISFRVDLEKHSAYDVGDEPLLLA-RRAV---T 117 (338)
Q Consensus 46 VI~VGNitvGGtGKTP~v~~l~~~l~~~g~~~~ilsR----GYg~~~~~~~~v~~~~~~~~~vGDEp~lla-~~~p---v 117 (338)
|+.+| .-|+|||-++.+||+.|... +++- -|.+-..+ +...+..+....+..+- ...+ .
T Consensus 5 I~I~G---ptGsGKStla~~LA~~l~~~-----~i~~Ds~q~y~~~~i~-----t~k~~~~e~~~~~~~~~~~~~~~~~~ 71 (270)
T 3eph_A 5 IVIAG---TTGVGKSQLSIQLAQKFNGE-----VINSDSMQVYKDIPII-----TNKHPLQEREGIPHHVMNHVDWSEEY 71 (270)
T ss_dssp EEEEE---CSSSSHHHHHHHHHHHHTEE-----EEECCTTTTBSSCTTT-----TTCCCGGGTTTCCEESCSCBCTTSCC
T ss_pred EEEEC---CCCHHHHHHHHHHHHHCCCE-----EEECCHHHHCCCCCEE-----ECCCCHHHHHCCCEEEECCCCCCCCC
T ss_conf 99989---77045999999999987998-----9910388740999558-----78999999918996146133799872
Q ss_pred CCCCCHHHHHHHHCC--CCCCEEEECCCCCCC--CCCC---EEEEEEECCCCCCCCCCCCCCHHHHHCCHHHHHHHHHHH
Q ss_conf 465201225664102--457479971832234--4123---069999618433566553761365210025566514544
Q gi|254780401|r 118 IVTSDRKIGVQMLLQ--EGVDIIIMDDGFHSA--DLQA---DFSLIVVNSHRGLGNGLVFPAGPLRVPLSRQLSYVDAIL 190 (338)
Q Consensus 118 ~V~~~R~~~~~~~~~--~~~diiIlDDGfQh~--~l~r---dl~Ivl~d~~~~~gn~~llPaGpLREp~~~~l~rad~vi 190 (338)
-++.-+..+...+.+ ......|+.+|---+ .+-+ .++++++ +.--|..-|++-+. +|+|..+
T Consensus 72 ~~~~f~~~a~~~~~~i~~~~~~~IivgGt~~yl~~~~~~l~~~~~l~~--------~l~~~r~~L~~ri~---~Rvd~M~ 140 (270)
T 3eph_A 72 YSHRFETECMNAIEDIHRRGKIPIVVGGTHYYLQTLFNKRLKFDTLFL--------WLYSKPEPLFQRLD---DRVDDML 140 (270)
T ss_dssp CHHHHHHHHHHHHHHHHTTTCEEEEECSCGGGGGGGGTCSCSSEEEEE--------EEECCHHHHHHHHH---HHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHHCCCCEEEECCCCCHHHHHHHCCCCCCCCCC--------CCCCCHHHHHHHHH---HHHHHHH
T ss_conf 899999999986545540457328967986159988630222122222--------45788788999999---9999999
Q ss_pred HCCCCHHH
Q ss_conf 20441245
Q gi|254780401|r 191 YVGNKKNV 198 (338)
Q Consensus 191 ~~~~~~~~ 198 (338)
-.|--++.
T Consensus 141 ~~Gl~~Ev 148 (270)
T 3eph_A 141 ERGALQEI 148 (270)
T ss_dssp HTTHHHHH
T ss_pred HCCHHHHH
T ss_conf 77769999
No 331
>>2g4r_A MOGA, molybdopterin biosynthesis MOG protein; anomalous substructure of MOGA, biosynthetic protein; 1.92A {Mycobacterium tuberculosis} (A:)
Probab=44.93 E-value=20 Score=16.03 Aligned_cols=36 Identities=11% Similarity=0.064 Sum_probs=21.9
Q ss_pred CCCEEEECCEEECCCCCCHHHHHHHHHHHHCCCCEE
Q ss_conf 898899823000788874899999999852473159
Q gi|254780401|r 43 PIPVICVGGFVMGGTGKTPTALAIAKAVIDKNLKPG 78 (338)
Q Consensus 43 ~~pVI~VGNitvGGtGKTP~v~~l~~~l~~~g~~~~ 78 (338)
.+-||++||=...|.=..-..-+|++.|.+.|+++.
T Consensus 5 rv~ii~~GdEi~~g~~~d~n~~~l~~~l~~~G~~v~ 40 (160)
T 2g4r_A 5 SARIVVVSSRAAAGVYTDDCGPIIAGWLEQHGFSSV 40 (160)
T ss_dssp CEEEEEECHHHHTTSSCCCHHHHHHHHHHHTTCCCC
T ss_pred EEEEEEECCCCCCCCCCCCHHHHHHHHHHHCCCCCE
T ss_conf 799999468330488488469999999987798102
No 332
>>2o1e_A YCDH; alpha-beta protein, structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; 2.60A {Bacillus subtilis} (A:190-271)
Probab=44.91 E-value=20 Score=16.03 Aligned_cols=51 Identities=12% Similarity=0.080 Sum_probs=40.7
Q ss_pred HHHHHHHHHHHCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCEEEECHH
Q ss_conf 578999887401000012214332348989999999975647987998546
Q gi|254780401|r 234 TEKFFTTVRQLGALIEQCYSFGDHAHLSDKKIAYLLDQAQQKGLILVTTAK 284 (338)
Q Consensus 234 P~~F~~~L~~~g~~i~~~~~fpDHh~ys~~dl~~i~~~a~~~~~~iiTTEK 284 (338)
-+.|--..+.+|++.+..+....+..-|.+++.++.+.+++++...|-+|.
T Consensus 8 H~af~Yf~~~ygl~~~~~~~~~~~~~ps~~~i~~l~~~ik~~~i~~if~e~ 58 (82)
T 2o1e_A 8 HTAFGYLAKEYGLKQVPIAGLSPDQEPSAASLAKLKTYAKEHNVKVIYFEE 58 (82)
T ss_dssp SCTTHHHHHHTTCEEEECSSCCSSSCCCHHHHHHHHHHTTSSCCCEEECSS
T ss_pred CCHHHHHHHHCCCEEEEECCCCCCCCCCHHHHHHHHHHHHHCCCCEEEEEC
T ss_conf 213666887468447640235652221335799999876525886899948
No 333
>>1moz_A ARL1, ADP-ribosylation factor-like protein 1; GTP-binding, protein binding; HET: GDP; 3.17A {Saccharomyces cerevisiae} (A:)
Probab=44.86 E-value=17 Score=16.55 Aligned_cols=33 Identities=18% Similarity=0.208 Sum_probs=21.1
Q ss_pred HHHCCCCCCCCCEEEECCEEECCCCCCHHHHHHHHHHHHC
Q ss_conf 7404643388988998230007888748999999998524
Q gi|254780401|r 34 MKRGQRLHAPIPVICVGGFVMGGTGKTPTALAIAKAVIDK 73 (338)
Q Consensus 34 ~~~~~~~~~~~pVI~VGNitvGGtGKTP~v~~l~~~l~~~ 73 (338)
++........+.|+.||+ +|+|||- |...+...
T Consensus 9 ~~~~~~~~~~~kivivG~---~~vGKTs----Li~r~~~~ 41 (183)
T 1moz_A 9 FDKLWGSNKELRILILGL---DGAGKTT----ILYRLQIG 41 (183)
T ss_dssp HGGGTTCSSCEEEEEEEE---TTSSHHH----HHHHTCCS
T ss_pred HHHHHCCCCEEEEEEECC---CCCCHHH----HHHHHHCC
T ss_conf 999717896799999999---9998899----99287459
No 334
>>3hbm_A UDP-sugar hydrolase; PSEG; 1.80A {Campylobacter jejuni subsp} PDB: 3hbn_A* (A:149-282)
Probab=44.83 E-value=17 Score=16.60 Aligned_cols=40 Identities=18% Similarity=0.083 Sum_probs=30.9
Q ss_pred CCCCEEEECCEEECCCCCCHHHHHHHHHHHHCCCCEEEEEECC
Q ss_conf 8898899823000788874899999999852473159876045
Q gi|254780401|r 42 APIPVICVGGFVMGGTGKTPTALAIAKAVIDKNLKPGFLSRGY 84 (338)
Q Consensus 42 ~~~pVI~VGNitvGGtGKTP~v~~l~~~l~~~g~~~~ilsRGY 84 (338)
.+.|+|. ++.||+|...+...+++.|.+.+....++..|=
T Consensus 7 ~~~~~V~---vs~Gs~~~~~~~~~i~~~l~~~~~~~~~~~~~~ 46 (134)
T 3hbm_A 7 KKKYDFF---ICXGGTDIKNLSLQIASELPKTKIISIATSSSN 46 (134)
T ss_dssp CCCEEEE---EECCSCCTTCHHHHHHHHSCTTSCEEEEECTTC
T ss_pred CCCCCEE---EEEECCCCCHHHHHHHHHHHHHHCCCEEEECCH
T ss_conf 2442226---554035530000112110122101210010120
No 335
>>2fna_A Conserved hypothetical protein; 13814777, structural genomics, joint center for structural genomics, JCSG; HET: MSE ADP; 2.00A {Sulfolobus solfataricus P2} (A:1-208)
Probab=44.60 E-value=11 Score=18.02 Aligned_cols=34 Identities=18% Similarity=0.076 Sum_probs=22.7
Q ss_pred CCCEEEECCEEECCCCCCHHHHHHHHHHHHCCCCEEEEEE
Q ss_conf 8988998230007888748999999998524731598760
Q gi|254780401|r 43 PIPVICVGGFVMGGTGKTPTALAIAKAVIDKNLKPGFLSR 82 (338)
Q Consensus 43 ~~pVI~VGNitvGGtGKTP~v~~l~~~l~~~g~~~~ilsR 82 (338)
+--|+..|- -|||||-++.++|+.+. .....++-
T Consensus 30 ~~~iLL~GP---pG~GKT~l~~~~a~~~~---~~~~~~~~ 63 (208)
T 2fna_A 30 APITLVLGL---RRTGKSSIIKIGINELN---LPYIYLDL 63 (208)
T ss_dssp SSEEEEEES---TTSSHHHHHHHHHHHHT---CCEEEEEG
T ss_pred CCEEEEECC---CCCCHHHHHHHHHHHCC---CCEEEEEE
T ss_conf 998999839---99979999999999879---97699997
No 336
>>3ixz_A Potassium-transporting ATPase alpha; ION pump, H+, K+-ATPase, P-type ATPase, membrane protein, hydrolase, aluminium fluoride, ATP-binding; 6.50A {Sus scrofa} PDB: 1iwc_A 1iwf_A (A:273-289,A:381-393,A:607-763)
Probab=44.49 E-value=21 Score=15.99 Aligned_cols=21 Identities=5% Similarity=-0.016 Sum_probs=8.6
Q ss_pred HHHHHHHHHHHHCCCCEEEEE
Q ss_conf 899999999852473159876
Q gi|254780401|r 61 PTALAIAKAVIDKNLKPGFLS 81 (338)
Q Consensus 61 P~v~~l~~~l~~~g~~~~ils 81 (338)
|-|....+.|++.|+++.++|
T Consensus 31 ~~v~~~I~~l~~agi~v~iiT 51 (187)
T 3ixz_A 31 ATVPDAVLKCRTAGIRVIMVT 51 (187)
T ss_pred HHHHHHHHHHHHCCCEEEEEC
T ss_conf 669999999998899199988
No 337
>>2fg5_A RAB-22B, RAS-related protein RAB-31; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.80A {Homo sapiens} (A:)
Probab=44.40 E-value=15 Score=16.90 Aligned_cols=24 Identities=21% Similarity=0.389 Sum_probs=18.0
Q ss_pred CCCEEEECCEEECCCCCCHHHHHHHHH
Q ss_conf 898899823000788874899999999
Q gi|254780401|r 43 PIPVICVGGFVMGGTGKTPTALAIAKA 69 (338)
Q Consensus 43 ~~pVI~VGNitvGGtGKTP~v~~l~~~ 69 (338)
.+.|+.||+ +|+|||-++..++.-
T Consensus 23 ~~KIvlvG~---~~vGKTSli~r~~~~ 46 (192)
T 2fg5_A 23 ELKVCLLGD---TGVGKSSIVCRFVQD 46 (192)
T ss_dssp EEEEEEEEC---TTSSHHHHHHHHHHC
T ss_pred EEEEEEECC---CCCCHHHHHHHHHHC
T ss_conf 879999997---991999999999849
No 338
>>3foj_A Uncharacterized protein; protein SSP1007, structural genomics, PSI-2, protein structure initiative; 1.60A {Staphylococcus saprophyticus subsp} (A:)
Probab=44.33 E-value=13 Score=17.36 Aligned_cols=82 Identities=13% Similarity=0.119 Sum_probs=41.2
Q ss_pred HHHHHHHHHHCCCCEEEE-EEC---C-CCCCCCCEEEECCCCCHHHHCCHHHHHHHCCCC-CCCCCHHH---HHHHHCCC
Q ss_conf 999999985247315987-604---5-787777558714567887704212332205763-46520122---56641024
Q gi|254780401|r 63 ALAIAKAVIDKNLKPGFL-SRG---Y-GRKSRISFRVDLEKHSAYDVGDEPLLLARRAVT-IVTSDRKI---GVQMLLQE 133 (338)
Q Consensus 63 v~~l~~~l~~~g~~~~il-sRG---Y-g~~~~~~~~v~~~~~~~~~vGDEp~lla~~~pv-~V~~~R~~---~~~~~~~~ 133 (338)
+..+.+.+++ +-++.+| -|- | .+...+...+. ..+.-+...-+.+..++ +.|..-.+ ++..+.+.
T Consensus 6 ~~~l~~~l~~-~~~~~iiDvR~~~e~~~~hi~ga~~ip-----~~~~~~~~~~~~~~~~iv~~c~~g~rs~~aa~~l~~~ 79 (100)
T 3foj_A 6 VTELKEKILD-ANPVNIVDVRTDQETAXGIIPGAETIP-----XNSIPDNLNYFNDNETYYIICKAGGRSAQVVQYLEQN 79 (100)
T ss_dssp HHHHHHGGGS-SSCCEEEECSCHHHHTTCBCTTCEECC-----GGGGGGCGGGSCTTSEEEEECSSSHHHHHHHHHHHTT
T ss_pred HHHHHHHHHC-CCCEEEEECCCHHHHHCCCCCCCCCCC-----HHHHHHHCCCCCCCCEEEEECCCCHHHHHHHHHHHHC
T ss_conf 9999999876-998289979978999729378745484-----0344553123678862999879986999999999985
Q ss_pred CCCEEEECCCCCCCCCC
Q ss_conf 57479971832234412
Q gi|254780401|r 134 GVDIIIMDDGFHSADLQ 150 (338)
Q Consensus 134 ~~diiIlDDGfQh~~l~ 150 (338)
+.++.+|++|+|-+.-.
T Consensus 80 G~~v~~l~GG~~~W~~~ 96 (100)
T 3foj_A 80 GVNAVNVEGGXDEFGDE 96 (100)
T ss_dssp TCEEEEETTHHHHHCSS
T ss_pred CCCEEEECCHHHHHHHC
T ss_conf 99879977869999985
No 339
>>1yzq_A Small GTP binding protein RAB6 isoform; RAB GTPase, vesicular trafficking, protein transport; HET: GNP; 1.78A {Homo sapiens} (A:)
Probab=44.31 E-value=15 Score=17.03 Aligned_cols=24 Identities=17% Similarity=0.241 Sum_probs=17.3
Q ss_pred CCCCEEEECCEEECCCCCCHHHHHHHH
Q ss_conf 889889982300078887489999999
Q gi|254780401|r 42 APIPVICVGGFVMGGTGKTPTALAIAK 68 (338)
Q Consensus 42 ~~~pVI~VGNitvGGtGKTP~v~~l~~ 68 (338)
-.+.|+.||+ +|+|||-++..+..
T Consensus 5 ~~~KiviiG~---~gvGKTsll~r~~~ 28 (170)
T 1yzq_A 5 RKFKLVFLGE---QSVGKTSLITRFMY 28 (170)
T ss_dssp --CEEEEEES---TTSSHHHHHHHHHH
T ss_pred CEEEEEEECC---CCCCHHHHHHHHHH
T ss_conf 6789999994---99899999999985
No 340
>>1xgk_A Nitrogen metabolite repression regulator NMRA; rossmann fold, transcriptional regulation, short chain dehydrogenase, reductase, NADP binding; 1.40A {Emericella nidulans} (A:)
Probab=44.27 E-value=21 Score=15.96 Aligned_cols=33 Identities=12% Similarity=0.148 Sum_probs=26.7
Q ss_pred EEECCCCCCHHHHHHHHHHHHCCCCEEEEEECCCC
Q ss_conf 00078887489999999985247315987604578
Q gi|254780401|r 52 FVMGGTGKTPTALAIAKAVIDKNLKPGFLSRGYGR 86 (338)
Q Consensus 52 itvGGtGKTP~v~~l~~~l~~~g~~~~ilsRGYg~ 86 (338)
+.+||||- +=..|++.|.++|+.|.+++|.-..
T Consensus 9 lVtGatG~--iG~~l~~~L~~~g~~V~~~~r~~~~ 41 (352)
T 1xgk_A 9 AVVGATGR--QGASLIRVAAAVGHHVRAQVHSLKG 41 (352)
T ss_dssp EEESTTSH--HHHHHHHHHHHTTCCEEEEESCSCS
T ss_pred EEECCCCH--HHHHHHHHHHHCCCEEEEEECCCCH
T ss_conf 99898708--9999999999687959999778530
No 341
>>2p4h_X Vestitone reductase; NADPH-dependent reductase, isoflavonoid, plant protein; 1.40A {Medicago sativa} (X:)
Probab=44.24 E-value=21 Score=15.96 Aligned_cols=33 Identities=24% Similarity=0.250 Sum_probs=27.3
Q ss_pred EEECCCCCCHHHHHHHHHHHHCCCCEEEEEECCCC
Q ss_conf 00078887489999999985247315987604578
Q gi|254780401|r 52 FVMGGTGKTPTALAIAKAVIDKNLKPGFLSRGYGR 86 (338)
Q Consensus 52 itvGGtGKTP~v~~l~~~l~~~g~~~~ilsRGYg~ 86 (338)
+.+|||| =+=-+|++.|.++|+.+.++.|.-..
T Consensus 5 LVTGatG--fIG~~lv~~Ll~~g~~v~~~~~~~~~ 37 (322)
T 2p4h_X 5 CVTGGTG--FLGSWIIKSLLENGYSVNTTIRADPE 37 (322)
T ss_dssp EEESTTS--HHHHHHHHHHHHTTCEEEEECCCC--
T ss_pred EEECCCC--HHHHHHHHHHHHCCCEEEEEECCCCC
T ss_conf 9989987--89999999999785989999878974
No 342
>>3gk5_A Uncharacterized rhodanese-related protein TVG0868615; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; 2.40A {Thermoplasma volcanium GSS1} (A:)
Probab=44.15 E-value=14 Score=17.30 Aligned_cols=48 Identities=19% Similarity=0.285 Sum_probs=28.8
Q ss_pred HHHCCHHHHHHHCCC-CCCCCCHHH---HHHHHCCCCCCEEEECCCCCCCCC
Q ss_conf 770421233220576-346520122---566410245747997183223441
Q gi|254780401|r 102 YDVGDEPLLLARRAV-TIVTSDRKI---GVQMLLQEGVDIIIMDDGFHSADL 149 (338)
Q Consensus 102 ~~vGDEp~lla~~~p-v~V~~~R~~---~~~~~~~~~~diiIlDDGfQh~~l 149 (338)
.+.-+..-.+.+.-+ |++|..-.. ++..+.+.|.++.+||+|++.+.-
T Consensus 43 ~~l~~~~~~~~~~~~iv~~c~~g~~s~~a~~~L~~~G~~v~~l~GG~~~W~~ 94 (108)
T 3gk5_A 43 SELREKWKILERDKKYAVICAHGNRSAAAVEFLSQLGLNIVDVEGGIQSWIE 94 (108)
T ss_dssp HHHHHHGGGSCTTSCEEEECSSSHHHHHHHHHHHTTTCCEEEETTHHHHHHH
T ss_pred HHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHCCCCEEEECCHHHHHHH
T ss_conf 1245665441014342221698549999999999849988998795999998
No 343
>>3kbq_A Protein TA0487; structural genomics, CINA, protein structure initiative, MCSG, PSI-2, midwest center for structural genomics; 2.00A {Thermoplasma acidophilum} (A:)
Probab=44.14 E-value=21 Score=15.95 Aligned_cols=35 Identities=20% Similarity=0.216 Sum_probs=19.2
Q ss_pred CCEEEECCEEECCCCCCHHHHHHHHHHHHCCCCEE
Q ss_conf 98899823000788874899999999852473159
Q gi|254780401|r 44 IPVICVGGFVMGGTGKTPTALAIAKAVIDKNLKPG 78 (338)
Q Consensus 44 ~pVI~VGNitvGGtGKTP~v~~l~~~l~~~g~~~~ 78 (338)
+-||++|+=.+-|.=-.-.--+|++.|.+.|+.+.
T Consensus 6 v~ii~~GdEl~~G~~~D~n~~~l~~~l~~~G~~v~ 40 (172)
T 3kbq_A 6 ASVITVGNEILKGRTVNTNAAFIGNFLTYHGYQVR 40 (172)
T ss_dssp EEEEEECHHHHTTSSCCHHHHHHHHHHHHTTCEEE
T ss_pred EEEEEECCCCCCCEEEEHHHHHHHHHHHHCCCCEE
T ss_conf 89999751151770466199999999998799177
No 344
>>1p9o_A Phosphopantothenoylcysteine synthetase; ligase; 2.30A {Homo sapiens} (A:)
Probab=44.11 E-value=9.4 Score=18.42 Aligned_cols=35 Identities=29% Similarity=0.366 Sum_probs=30.1
Q ss_pred CCEEEECCEEECCCCCCHHHHHHHHHHHHCCCCEEEEEEC
Q ss_conf 9889982300078887489999999985247315987604
Q gi|254780401|r 44 IPVICVGGFVMGGTGKTPTALAIAKAVIDKNLKPGFLSRG 83 (338)
Q Consensus 44 ~pVI~VGNitvGGtGKTP~v~~l~~~l~~~g~~~~ilsRG 83 (338)
.||=+|.|.+.|.+|. ++|+++..+|++|.++++.
T Consensus 54 ~~VR~ItN~SsG~~G~-----~iAe~~~~~G~~Vi~~~g~ 88 (313)
T 1p9o_A 54 RPVRFLDNFSSGRRGA-----TSAEAFLAAGYGVLFLYRA 88 (313)
T ss_dssp SCSEEEEECCCCHHHH-----HHHHHHHHTTCEEEEEEET
T ss_pred CCCEEECCCCCHHHHH-----HHHHHHHHCCCEEEEEECC
T ss_conf 9833862788608899-----9999999869989999368
No 345
>>2cvh_A DNA repair and recombination protein RADB; filament formation, homologous recombination, ATPase domain, hyperthermophIle; HET: DNA; 2.20A {Thermococcus kodakarensis} PDB: 2cvf_A* (A:)
Probab=43.65 E-value=8.3 Score=18.81 Aligned_cols=27 Identities=22% Similarity=-0.018 Sum_probs=21.2
Q ss_pred CCCCCCHHHHHHHHHHHHCCCCEEEEE
Q ss_conf 788874899999999852473159876
Q gi|254780401|r 55 GGTGKTPTALAIAKAVIDKNLKPGFLS 81 (338)
Q Consensus 55 GGtGKTP~v~~l~~~l~~~g~~~~ils 81 (338)
-|||||-++.-++....+.+-.+.+++
T Consensus 29 pGsGKT~l~~q~~~~~~~~~~~~~~~~ 55 (220)
T 2cvh_A 29 YASGKTTLALQTGLLSGKKVAYVDTEG 55 (220)
T ss_dssp TTSSHHHHHHHHHHHHCSEEEEEESSC
T ss_pred CCCCHHHHHHHHHHHHCCCCCEEEEEE
T ss_conf 999899999999998535774267870
No 346
>>3cm0_A Adenylate kinase; ATP-binding, cytoplasm, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics; 1.80A {Thermus thermophilus} (A:)
Probab=43.62 E-value=11 Score=17.88 Aligned_cols=19 Identities=32% Similarity=0.296 Sum_probs=15.6
Q ss_pred CCCCCCHHHHHHHHHHHHC
Q ss_conf 7888748999999998524
Q gi|254780401|r 55 GGTGKTPTALAIAKAVIDK 73 (338)
Q Consensus 55 GGtGKTP~v~~l~~~l~~~ 73 (338)
-|||||-++..|++.|...
T Consensus 13 ~GsGKtTla~~La~~l~~~ 31 (186)
T 3cm0_A 13 PGAGKGTQASRLAQELGFK 31 (186)
T ss_dssp TTSCHHHHHHHHHHHHTCE
T ss_pred CCCCHHHHHHHHHHHHCCE
T ss_conf 9998799999999985987
No 347
>>1x1r_A RAS-related protein M-RAS; GTP-binding, signaling protein; HET: GDP; 1.30A {Mus musculus} (A:)
Probab=43.58 E-value=13 Score=17.55 Aligned_cols=26 Identities=23% Similarity=0.464 Sum_probs=17.3
Q ss_pred CCCCCCEEEECCEEECCCCCCHHHHHHHH
Q ss_conf 33889889982300078887489999999
Q gi|254780401|r 40 LHAPIPVICVGGFVMGGTGKTPTALAIAK 68 (338)
Q Consensus 40 ~~~~~pVI~VGNitvGGtGKTP~v~~l~~ 68 (338)
....+.|+.||+ +|.|||-++..++.
T Consensus 10 ~~~~~KivivGd---~~VGKTsLi~r~~~ 35 (178)
T 1x1r_A 10 NLPTYKLVVVGD---GGVGKSALTIQFFQ 35 (178)
T ss_dssp CCCEEEEEEECC---TTSSHHHHHHHHHH
T ss_pred CCCEEEEEEECC---CCCCHHHHHHHHHH
T ss_conf 897179999999---99098999999973
No 348
>>1sxj_E Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ ATPase, DNA polymerase; HET: ATG ADP; 2.85A {Saccharomyces cerevisiae} (E:1-192)
Probab=43.51 E-value=21 Score=15.89 Aligned_cols=40 Identities=18% Similarity=0.281 Sum_probs=28.5
Q ss_pred HHHHCCCCCCCCCEEEECCEEECCCCCCHHHHHHHHHHHHCCC
Q ss_conf 9740464338898899823000788874899999999852473
Q gi|254780401|r 33 LMKRGQRLHAPIPVICVGGFVMGGTGKTPTALAIAKAVIDKNL 75 (338)
Q Consensus 33 ~~~~~~~~~~~~pVI~VGNitvGGtGKTP~v~~l~~~l~~~g~ 75 (338)
...+....+.+-.++-.|.= |+|||.++..+|+.+.....
T Consensus 26 L~~~l~~~~~~~~lLl~Gp~---G~GKt~~A~~la~~l~~~~~ 65 (192)
T 1sxj_E 26 LKSLSDQPRDLPHLLLYGPN---GTGKKTRCMALLESIFGPGV 65 (192)
T ss_dssp HHTTTTCTTCCCCEEEECST---TSSHHHHHHTHHHHHSCTTC
T ss_pred HHHHHHCCCCCCEEEEECCC---CCCHHHHHHHHHHHHCCCCC
T ss_conf 99999679987869888979---99899999999998659863
No 349
>>2whl_A Beta-mannanase, baman5; glycoside hydrolase, hydrolase; HET: MAN BMA; 1.40A {Bacillus agaradhaerens} PDB: 2whj_A (A:1-258)
Probab=43.23 E-value=22 Score=15.86 Aligned_cols=28 Identities=14% Similarity=0.092 Sum_probs=19.2
Q ss_pred CCCHHHHHHHHHHHHHCCCEEEECHHHH
Q ss_conf 4898999999997564798799854663
Q gi|254780401|r 259 HLSDKKIAYLLDQAQQKGLILVTTAKDA 286 (338)
Q Consensus 259 ~ys~~dl~~i~~~a~~~~~~iiTTEKD~ 286 (338)
.++...+....+.+.+.+.+++.||=-+
T Consensus 195 ~~~~~~~~~~~~~~~~~~~P~~~~E~g~ 222 (258)
T 2whl_A 195 GGDANTVRSNIDRVIDQDLALVIGEFGH 222 (258)
T ss_dssp TSSHHHHHHHHHHHHTTTCCEEEEEECC
T ss_pred CCCHHHHHHHHHHHHHCCCCEEEEECCC
T ss_conf 7857999999999986699889985577
No 350
>>3k1z_A Haloacid dehalogenase-like hydrolase domain- containing protein 3; HDHD3, structural genomics, structural genomics consortium, SGC; 1.55A {Homo sapiens} (A:1-17,A:102-263)
Probab=43.17 E-value=16 Score=16.84 Aligned_cols=26 Identities=12% Similarity=-0.009 Sum_probs=20.1
Q ss_pred CHHHHHHHHHHHHCCCCEEEEEECCC
Q ss_conf 48999999998524731598760457
Q gi|254780401|r 60 TPTALAIAKAVIDKNLKPGFLSRGYG 85 (338)
Q Consensus 60 TP~v~~l~~~l~~~g~~~~ilsRGYg 85 (338)
.|=+..+.+.|+++|++++|+|-+..
T Consensus 24 ~pgv~e~L~~Lk~~G~~l~ivSn~~~ 49 (179)
T 3k1z_A 24 LDGAEDTLRECRTRGLRLAVISNFDR 49 (179)
T ss_dssp CTTHHHHHHHHHHTTCEEEEEESCCT
T ss_pred CCCHHHHHHHHHHCCCCEEEECCCHH
T ss_conf 81699999999986992564145215
No 351
>>3enk_A UDP-glucose 4-epimerase; seattle structural genomics center for infectious disease, ssgcid, isomerase, NAD; HET: NAD GUD; 1.90A {Burkholderia pseudomallei 1710B} (A:)
Probab=43.07 E-value=22 Score=15.84 Aligned_cols=31 Identities=16% Similarity=0.163 Sum_probs=25.5
Q ss_pred EEECCCCCCHHHHHHHHHHHHCCCCEEEEEECC
Q ss_conf 000788874899999999852473159876045
Q gi|254780401|r 52 FVMGGTGKTPTALAIAKAVIDKNLKPGFLSRGY 84 (338)
Q Consensus 52 itvGGtGKTP~v~~l~~~l~~~g~~~~ilsRGY 84 (338)
+.+|||| =+=.+|++.|.++|+.|.++.|.=
T Consensus 9 lVTGatG--fIG~~lv~~Ll~~G~~V~~~~r~~ 39 (341)
T 3enk_A 9 LVTGGAG--YIGSHTAVELLAHGYDVVIADNLV 39 (341)
T ss_dssp EEETTTS--HHHHHHHHHHHHTTCEEEEECCCS
T ss_pred EEECCCC--HHHHHHHHHHHHCCCEEEEEECCC
T ss_conf 9974886--899999999997849799997888
No 352
>>2pzm_A Putative nucleotide sugar epimerase/ dehydratase; rossman fold, protein-NAD complex, protein-nucleotide complex; HET: NAD UDP; 2.00A {Bordetella bronchiseptica} PDB: 2pzl_A* 2pzk_A* (A:1-184)
Probab=42.84 E-value=22 Score=15.82 Aligned_cols=32 Identities=9% Similarity=0.077 Sum_probs=22.3
Q ss_pred EECCCCCCHHHHHHHHHHHHCCCCEEEEEECCCC
Q ss_conf 0078887489999999985247315987604578
Q gi|254780401|r 53 VMGGTGKTPTALAIAKAVIDKNLKPGFLSRGYGR 86 (338)
Q Consensus 53 tvGGtGKTP~v~~l~~~l~~~g~~~~ilsRGYg~ 86 (338)
.+||||- +--+|++.|.++|+.+.++.|.-.+
T Consensus 25 ItGatGf--iG~~lv~~L~~~g~~v~~~~~~~~~ 56 (184)
T 2pzm_A 25 ITGGAGC--LGSNLIEHWLPQGHEILVIDNFATG 56 (184)
T ss_dssp EETTTSH--HHHHHHHHHGGGTCEEEEEECCSSS
T ss_pred EECCCCH--HHHHHHHHHHHCCCEEEEEECCCCC
T ss_conf 9888778--9999999999785989999788877
No 353
>>3bk7_A ABC transporter ATP-binding protein; ABC ATPase, iron-sulfur cluster, adenosine diphosphate, nucleotide-binding; HET: ADP; 2.80A {Pyrococcus abyssi} (A:347-572)
Probab=42.74 E-value=9.1 Score=18.52 Aligned_cols=95 Identities=18% Similarity=0.128 Sum_probs=43.7
Q ss_pred ECCCCCCHHHHHHHHHHHHC-CCCEEEEEECCCCC-----CCCCEEEECCCCCHHHHCCHHH---HHH---------HCC
Q ss_conf 07888748999999998524-73159876045787-----7775587145678877042123---322---------057
Q gi|254780401|r 54 MGGTGKTPTALAIAKAVIDK-NLKPGFLSRGYGRK-----SRISFRVDLEKHSAYDVGDEPL---LLA---------RRA 115 (338)
Q Consensus 54 vGGtGKTP~v~~l~~~l~~~-g~~~~ilsRGYg~~-----~~~~~~v~~~~~~~~~vGDEp~---lla---------~~~ 115 (338)
--|+|||-+.-.|+...+.- |--..=++=+|... ..+...-....-......+.-. ++. ++.
T Consensus 44 ~NGaGKSTllk~i~Gl~~p~~G~i~~~~~i~~~p~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~ 123 (226)
T 3bk7_A 44 PNGIGKTTFVKMLAGVEEPTEGKVEWDLTVAYKPQYIKAEYEGTVYELLSKIDSSKLNSNFYKTELLKPLGIIDLYDRNV 123 (226)
T ss_dssp CTTSSHHHHHHHHHTSSCCSBSCCCCCCCEEEECSSCCCCCSSBHHHHHHHHHHHHHHCHHHHHHTHHHHTCTTTTTSBG
T ss_pred CCCCCCCCHHHHHCCCCCCCCCCCCCCCCEECCHHHHHHCCCCCHHHHHHHCCCCHHHHHHHHHHHHHHCCCHHHHCCCH
T ss_conf 87765550435642886688784023574000112233051210566555404100214589999999859915532662
Q ss_pred CCCCCCCHHH-HHHHHCCCCCCEEEECCCCCCCC
Q ss_conf 6346520122-56641024574799718322344
Q gi|254780401|r 116 VTIVTSDRKI-GVQMLLQEGVDIIIMDDGFHSAD 148 (338)
Q Consensus 116 pv~V~~~R~~-~~~~~~~~~~diiIlDDGfQh~~ 148 (338)
-..-+..|.+ ++..+.-.+++++|||.-..+.-
T Consensus 124 ~~LSGGekqRv~iAral~~~p~illlDEPts~LD 157 (226)
T 3bk7_A 124 EDLSGGELQRVAIAATLLRDADIYLLDEPSAYLD 157 (226)
T ss_dssp GGCCHHHHHHHHHHHHHTSCCSEEEEECTTTTCC
T ss_pred HHCCHHHHHHHHHHHHHHCCCCEEEEECCCCCCC
T ss_conf 6489999999999999964999899979987789
No 354
>>2bdt_A BH3686; alpha-beta protein, structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 2.40A {Bacillus halodurans c-125} (A:)
Probab=42.47 E-value=9.8 Score=18.29 Aligned_cols=16 Identities=31% Similarity=0.526 Sum_probs=12.3
Q ss_pred CCCCCCHHHHHHHHHH
Q ss_conf 7888748999999998
Q gi|254780401|r 55 GGTGKTPTALAIAKAV 70 (338)
Q Consensus 55 GGtGKTP~v~~l~~~l 70 (338)
-|+|||-++..|++.+
T Consensus 11 ~GsGKTT~a~~L~~~l 26 (189)
T 2bdt_A 11 AGVGKSTTCKRLAAQL 26 (189)
T ss_dssp TTSSHHHHHHHHHHHS
T ss_pred CCCCHHHHHHHHHHHH
T ss_conf 9989899999999981
No 355
>>2fn4_A P23, RAS-related protein R-RAS; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 1.65A {Homo sapiens} (A:)
Probab=42.43 E-value=14 Score=17.16 Aligned_cols=28 Identities=25% Similarity=0.535 Sum_probs=18.4
Q ss_pred CCCCCCCEEEECCEEECCCCCCHHHHHHHHH
Q ss_conf 4338898899823000788874899999999
Q gi|254780401|r 39 RLHAPIPVICVGGFVMGGTGKTPTALAIAKA 69 (338)
Q Consensus 39 ~~~~~~pVI~VGNitvGGtGKTP~v~~l~~~ 69 (338)
+....+.|+.||+ +|.|||-++..++.-
T Consensus 5 ~~~~~~KiviiGd---~~vGKTsll~r~~~~ 32 (181)
T 2fn4_A 5 PPSETHKLVVVGG---GGVGKSALTIQFIQS 32 (181)
T ss_dssp CSSCEEEEEEEEC---TTSSHHHHHHHHHHS
T ss_pred CCCCCEEEEEECC---CCCCHHHHHHHHHHC
T ss_conf 9887458999997---993989999999729
No 356
>>1ukz_A Uridylate kinase; transferase; HET: ADP AMP; 1.90A {Saccharomyces cerevisiae} (A:)
Probab=42.43 E-value=9.9 Score=18.28 Aligned_cols=25 Identities=36% Similarity=0.422 Sum_probs=17.8
Q ss_pred EEEE-CCEEECCCCCCHHHHHHHHHHHHC
Q ss_conf 8998-230007888748999999998524
Q gi|254780401|r 46 VICV-GGFVMGGTGKTPTALAIAKAVIDK 73 (338)
Q Consensus 46 VI~V-GNitvGGtGKTP~v~~l~~~l~~~ 73 (338)
+|+| |. -|+|||-++..|++.|...
T Consensus 17 ~I~i~G~---~GsGKtTla~~La~~l~~~ 42 (203)
T 1ukz_A 17 VIFVLGG---PGAGKGTQCEKLVKDYSFV 42 (203)
T ss_dssp EEEEECS---TTSSHHHHHHHHHHHSSCE
T ss_pred EEEEECC---CCCCHHHHHHHHHHHHCCC
T ss_conf 8999899---9998799999999985991
No 357
>>3dm5_A SRP54, signal recognition 54 kDa protein; protein-RNA, signal recognition particle, SRP-GTPase, protein targeting, cytoplasm, GTP-binding; HET: GDP; 2.51A {Pyrococcus furiosus} (A:94-285)
Probab=42.43 E-value=22 Score=15.77 Aligned_cols=31 Identities=26% Similarity=0.400 Sum_probs=24.8
Q ss_pred EEECCCCCCHHHHHHHHHHHHCCCCEEEEEE
Q ss_conf 0007888748999999998524731598760
Q gi|254780401|r 52 FVMGGTGKTPTALAIAKAVIDKNLKPGFLSR 82 (338)
Q Consensus 52 itvGGtGKTP~v~~l~~~l~~~g~~~~ilsR 82 (338)
+=-=|+|||-+...|+..+....-++.+...
T Consensus 13 iGpsGsGKSTll~~l~g~~~p~~G~v~~~~~ 43 (192)
T 3dm5_A 13 VGIQGSGKTTTVAKLARYFQKRGYKVGVVCS 43 (192)
T ss_dssp ECCTTSSHHHHHHHHHHHHHTTTCCEEEEEC
T ss_pred CCCCCCCCHHHHHHHHHHHHHCCCEEEEEEE
T ss_conf 2466666406889999999963982689973
No 358
>>1z45_A GAL10 bifunctional protein; epimerase, mutarotase, metabolism, , isomerase; HET: GAL NAD GUD; 1.85A {Saccharomyces cerevisiae} (A:1-354)
Probab=42.42 E-value=22 Score=15.77 Aligned_cols=31 Identities=16% Similarity=0.154 Sum_probs=25.5
Q ss_pred EEECCCCCCHHHHHHHHHHHHCCCCEEEEEECC
Q ss_conf 000788874899999999852473159876045
Q gi|254780401|r 52 FVMGGTGKTPTALAIAKAVIDKNLKPGFLSRGY 84 (338)
Q Consensus 52 itvGGtGKTP~v~~l~~~l~~~g~~~~ilsRGY 84 (338)
+.+|||| =+=.+|++.|.++|+.+.++.|.=
T Consensus 15 LVTGatG--fiG~~lv~~Ll~~g~~v~~~~r~~ 45 (354)
T 1z45_A 15 LVTGGAG--YIGSHTVVELIENGYDCVVADNLS 45 (354)
T ss_dssp EEETTTS--HHHHHHHHHHHHTTCEEEEEECCS
T ss_pred EEECCCC--HHHHHHHHHHHHCCCEEEEEECCC
T ss_conf 9978971--899999999997869699998888
No 359
>>1knq_A Gluconate kinase; ALFA/beta structure, transferase; 2.00A {Escherichia coli} (A:)
Probab=42.40 E-value=12 Score=17.67 Aligned_cols=19 Identities=26% Similarity=0.443 Sum_probs=15.5
Q ss_pred CCCCCCHHHHHHHHHHHHC
Q ss_conf 7888748999999998524
Q gi|254780401|r 55 GGTGKTPTALAIAKAVIDK 73 (338)
Q Consensus 55 GGtGKTP~v~~l~~~l~~~ 73 (338)
-|+|||-++..|++.|...
T Consensus 17 ~GsGKSTla~~La~~l~~~ 35 (175)
T 1knq_A 17 SGSGKSAVASEVAHQLHAA 35 (175)
T ss_dssp TTSCHHHHHHHHHHHHTCE
T ss_pred CCCCHHHHHHHHHHHHCCC
T ss_conf 9989899999999996988
No 360
>>1rkx_A CDP-glucose-4,6-dehydratase; SDR, lyase; HET: NAD; 1.80A {Yersinia pseudotuberculosis} (A:)
Probab=42.26 E-value=22 Score=15.76 Aligned_cols=34 Identities=18% Similarity=-0.056 Sum_probs=27.3
Q ss_pred EEECCCCCCHHHHHHHHHHHHCCCCEEEEEECCCCC
Q ss_conf 000788874899999999852473159876045787
Q gi|254780401|r 52 FVMGGTGKTPTALAIAKAVIDKNLKPGFLSRGYGRK 87 (338)
Q Consensus 52 itvGGtGKTP~v~~l~~~l~~~g~~~~ilsRGYg~~ 87 (338)
+.+|||| =+=.+|++.|.++|+.+.++.|.....
T Consensus 13 LVTGatG--fiG~~lv~~Ll~~g~~v~~~~r~~~~~ 46 (357)
T 1rkx_A 13 FVTGHTG--FKGGWLSLWLQTMGATVKGYSLTAPTV 46 (357)
T ss_dssp EEETTTS--HHHHHHHHHHHHTTCEEEEEESSCSSS
T ss_pred EEECCCC--HHHHHHHHHHHHCCCEEEEEECCCCCC
T ss_conf 9968997--899999999997799899997899862
No 361
>>2wm8_A MDP-1, magnesium-dependent phosphatase 1; haloacid dehalogenase, protein phosphatase, alternative splicing, hydrolase, metal-binding; 1.75A {Homo sapiens} PDB: 1u7o_A 1u7p_A (A:27-187)
Probab=42.21 E-value=22 Score=15.75 Aligned_cols=27 Identities=15% Similarity=0.054 Sum_probs=18.9
Q ss_pred CCHHHHHHHHHHHHCCCCEEEEEECCC
Q ss_conf 748999999998524731598760457
Q gi|254780401|r 59 KTPTALAIAKAVIDKNLKPGFLSRGYG 85 (338)
Q Consensus 59 KTP~v~~l~~~l~~~g~~~~ilsRGYg 85 (338)
-.|=+..+.+.|+++|++++++|.|..
T Consensus 43 ~~pg~~e~l~~L~~~g~~i~i~T~~~~ 69 (161)
T 2wm8_A 43 LYPEVPEVLKRLQSLGVPGAAASRTSE 69 (161)
T ss_dssp CCTTHHHHHHHHHHHTCCEEEEECCSC
T ss_pred CCHHHHHHHHHHHHCCCEEEEECCCCH
T ss_conf 475599999999988977995067854
No 362
>>1ak2_A Adenylate kinase isoenzyme-2; nucleoside monophosphate kinase, phosphotransferase; 1.92A {Bos taurus} (A:1-131,A:180-233)
Probab=42.18 E-value=12 Score=17.60 Aligned_cols=27 Identities=26% Similarity=0.325 Sum_probs=19.7
Q ss_pred CCEEEECCEEECCCCCCHHHHHHHHHHHHC
Q ss_conf 988998230007888748999999998524
Q gi|254780401|r 44 IPVICVGGFVMGGTGKTPTALAIAKAVIDK 73 (338)
Q Consensus 44 ~pVI~VGNitvGGtGKTP~v~~l~~~l~~~ 73 (338)
.-|+.+|. -|+|||-++..|++.|.-.
T Consensus 17 ~~Ivi~G~---~GsGKTTia~~La~~l~~~ 43 (185)
T 1ak2_A 17 VRAVLLGP---PGAGKGTQAPKLAKNFCVC 43 (185)
T ss_dssp CEEEEECC---TTSSHHHHHHHHHHHHTCE
T ss_pred CEEEEECC---CCCCHHHHHHHHHHHHCCE
T ss_conf 47999899---9998799999999986983
No 363
>>2qzj_A Two-component response regulator; 11017X, PSI-II, structural genomics, protein structure initiative; 2.89A {Clostridium difficile 630} (A:)
Probab=42.10 E-value=22 Score=15.74 Aligned_cols=28 Identities=7% Similarity=0.100 Sum_probs=14.9
Q ss_pred CCCCCCCHHHHHHHHCCCCCCEEEECCC
Q ss_conf 6346520122566410245747997183
Q gi|254780401|r 116 VTIVTSDRKIGVQMLLQEGVDIIIMDDG 143 (338)
Q Consensus 116 pv~V~~~R~~~~~~~~~~~~diiIlDDG 143 (338)
-|.+..+=.+|...+.+..+|+||+|-.
T Consensus 30 ~v~~a~~~~~al~~l~~~~~dliilD~~ 57 (136)
T 2qzj_A 30 SIDLAYNCEEAIGKIFSNKYDLIFLEII 57 (136)
T ss_dssp EEEEESSHHHHHHHHHHCCCSEEEEESE
T ss_pred EEEEECCHHHHHHHHHCCCCCEEEEECC
T ss_conf 9999824889999860669868986213
No 364
>>3ch4_B Pmkase, phosphomevalonate kinase; parallel beta-sheet with the strand order 23145, walker A motif, cholesterol biosynthesis, lipid synthesis; 1.76A {Homo sapiens} (B:)
Probab=42.03 E-value=8.8 Score=18.64 Aligned_cols=35 Identities=17% Similarity=0.016 Sum_probs=25.1
Q ss_pred EEEECCEEECCCCCCHHHHHHHHHHHHCCCCEEEEEEC
Q ss_conf 89982300078887489999999985247315987604
Q gi|254780401|r 46 VICVGGFVMGGTGKTPTALAIAKAVIDKNLKPGFLSRG 83 (338)
Q Consensus 46 VI~VGNitvGGtGKTP~v~~l~~~l~~~g~~~~ilsRG 83 (338)
|+..|.. |+|||-++..|++.|....+.+..+.+-
T Consensus 14 I~i~G~~---GsGKsT~a~~La~~l~~~~~~~~~~~~~ 48 (202)
T 3ch4_B 14 LLFSGKR---KSGKDFVTEALQSRLGADVCAVLRLSGP 48 (202)
T ss_dssp EEEEECT---TSSHHHHHHHHHHHHCTTTEEEECTHHH
T ss_pred EEEECCC---CCCHHHHHHHHHHHCCCCCEEEEEECHH
T ss_conf 9998989---9899999999998549984788650358
No 365
>>1via_A Shikimate kinase; structural genomics, transferase; HET: MSE; 1.57A {Campylobacter jejuni} (A:)
Probab=41.99 E-value=12 Score=17.60 Aligned_cols=23 Identities=35% Similarity=0.534 Sum_probs=16.6
Q ss_pred EEEECCEEECCCCCCHHHHHHHHHHH
Q ss_conf 89982300078887489999999985
Q gi|254780401|r 46 VICVGGFVMGGTGKTPTALAIAKAVI 71 (338)
Q Consensus 46 VI~VGNitvGGtGKTP~v~~l~~~l~ 71 (338)
|+..|- -|+|||-++..|++.|-
T Consensus 7 I~i~G~---~GsGKsTia~~La~~lg 29 (175)
T 1via_A 7 IVFIGF---XGSGKSTLARALAKDLD 29 (175)
T ss_dssp EEEECC---TTSCHHHHHHHHHHHHT
T ss_pred EEEECC---CCCCHHHHHHHHHHHHC
T ss_conf 999858---99989999999999849
No 366
>>2f9l_A RAB11B, member RAS oncogene family; RAB11B GTPase, vesicle transport, hydrolase; HET: GDP; 1.55A {Homo sapiens} (A:)
Probab=41.93 E-value=18 Score=16.39 Aligned_cols=31 Identities=19% Similarity=0.356 Sum_probs=18.9
Q ss_pred CCEEEECCEEECCCCCCHHHHHHHHHHHHCCCCE
Q ss_conf 9889982300078887489999999985247315
Q gi|254780401|r 44 IPVICVGGFVMGGTGKTPTALAIAKAVIDKNLKP 77 (338)
Q Consensus 44 ~pVI~VGNitvGGtGKTP~v~~l~~~l~~~g~~~ 77 (338)
+.|+.||+ +|+|||-++..++.---...+.+
T Consensus 6 ~KivivGd---~~VGKTsLi~r~~~~~f~~~~~~ 36 (199)
T 2f9l_A 6 FKVVLIGD---SGVGKSNLLSRFTRNEFNLESKS 36 (199)
T ss_dssp EEEEEESS---TTSSHHHHHHHHHHSCCCC---C
T ss_pred EEEEEECC---CCCCHHHHHHHHHHCCCCCCCCC
T ss_conf 89999999---99098999999984989887588
No 367
>>1tev_A UMP-CMP kinase; ploop, NMP binding region, LID region, conformational changes, transferase; 2.10A {Homo sapiens} (A:)
Probab=41.84 E-value=13 Score=17.53 Aligned_cols=28 Identities=29% Similarity=0.411 Sum_probs=18.9
Q ss_pred EEEECCEEECCCCCCHHHHHHHHHHHHCCCC
Q ss_conf 8998230007888748999999998524731
Q gi|254780401|r 46 VICVGGFVMGGTGKTPTALAIAKAVIDKNLK 76 (338)
Q Consensus 46 VI~VGNitvGGtGKTP~v~~l~~~l~~~g~~ 76 (338)
|+..|. =|+|||-++..|++.|....+.
T Consensus 6 I~i~G~---~GsGKsTla~~La~~l~~~~~~ 33 (196)
T 1tev_A 6 VFVLGG---PGAGKGTQCARIVEKYGYTHLS 33 (196)
T ss_dssp EEEECC---TTSSHHHHHHHHHHHHCCEEEE
T ss_pred EEEECC---CCCCHHHHHHHHHHHHCCCEEC
T ss_conf 999899---9999899999999986995760
No 368
>>2pt5_A Shikimate kinase, SK; aromatic amino acid biosynthesis, P-loop kinase, shikimate pathway, nucleotide-binding, amino-acid biosynthesis; 2.10A {Aquifex aeolicus} (A:)
Probab=41.81 E-value=12 Score=17.56 Aligned_cols=17 Identities=12% Similarity=0.292 Sum_probs=14.1
Q ss_pred CCCCCCHHHHHHHHHHH
Q ss_conf 78887489999999985
Q gi|254780401|r 55 GGTGKTPTALAIAKAVI 71 (338)
Q Consensus 55 GGtGKTP~v~~l~~~l~ 71 (338)
-|+|||-++..|++.|.
T Consensus 9 ~GsGKTTla~~La~~l~ 25 (168)
T 2pt5_A 9 XCSGKSTVGSLLSRSLN 25 (168)
T ss_dssp TTSCHHHHHHHHHHHHT
T ss_pred CCCCHHHHHHHHHHHHC
T ss_conf 99988999999999839
No 369
>>2dhr_A FTSH; AAA+ protein, hexameric Zn metalloprotease, hydrolase; HET: ADP; 3.90A {Thermus thermophilus} (A:1-200)
Probab=41.80 E-value=11 Score=17.95 Aligned_cols=29 Identities=34% Similarity=0.326 Sum_probs=19.6
Q ss_pred CCEEEC--CCCCCHHHHHHHHHHHHCCCCEEEEE
Q ss_conf 230007--88874899999999852473159876
Q gi|254780401|r 50 GGFVMG--GTGKTPTALAIAKAVIDKNLKPGFLS 81 (338)
Q Consensus 50 GNitvG--GtGKTP~v~~l~~~l~~~g~~~~ils 81 (338)
|=+-.| |||||-++.++|+.+. .....++
T Consensus 66 giLl~GppGtGKT~la~ala~~~~---~~~~~i~ 96 (200)
T 2dhr_A 66 GVLLVGPPGVGKTHLARAVAGEAR---VPFITAS 96 (200)
T ss_dssp EEEEECSSSSSHHHHHHHHHHHTT---CCEEEEE
T ss_pred EEEEECCCCCCHHHHHHHHHHHHC---CCEEEEE
T ss_conf 589889899858999999997518---9469977
No 370
>>1ltq_A Polynucleotide kinase; phosphatase, alpha/beta, P-loop, transferase; HET: ADP; 2.33A {Enterobacteria phage T4} (A:1-114)
Probab=41.68 E-value=11 Score=18.09 Aligned_cols=24 Identities=21% Similarity=0.080 Sum_probs=16.3
Q ss_pred CCCCCCHHHHHHHHHHHHCCCCEEEEEE
Q ss_conf 7888748999999998524731598760
Q gi|254780401|r 55 GGTGKTPTALAIAKAVIDKNLKPGFLSR 82 (338)
Q Consensus 55 GGtGKTP~v~~l~~~l~~~g~~~~ilsR 82 (338)
=|+|||-++-.|++.+. .+.++|.
T Consensus 11 pGsGKTT~a~~l~~~l~----~~~~~~~ 34 (114)
T 1ltq_A 11 PGSGKSTWAREFIAKNP----GFYNINR 34 (114)
T ss_dssp TTSSHHHHHHHHHHHST----TEEEECH
T ss_pred CCCCHHHHHHHHHHHCC----CCEEECC
T ss_conf 99978999999998489----9899820
No 371
>>3e8x_A Putative NAD-dependent epimerase/dehydratase; structural genomics, APC7755, NADP, PSI-2, protein structure initiative; HET: MSE NAP; 2.10A {Bacillus halodurans} (A:)
Probab=41.67 E-value=23 Score=15.70 Aligned_cols=31 Identities=26% Similarity=0.349 Sum_probs=25.4
Q ss_pred EEECCCCCCHHHHHHHHHHHHCCCCEEEEEECC
Q ss_conf 000788874899999999852473159876045
Q gi|254780401|r 52 FVMGGTGKTPTALAIAKAVIDKNLKPGFLSRGY 84 (338)
Q Consensus 52 itvGGtGKTP~v~~l~~~l~~~g~~~~ilsRGY 84 (338)
+.+||||. +=.+|++.|.++|+++.+++|.-
T Consensus 25 lItGatG~--iG~~l~~~L~~~~~~v~~~~r~~ 55 (236)
T 3e8x_A 25 LVVGANGK--VARYLLSELKNKGHEPVAXVRNE 55 (236)
T ss_dssp EEETTTSH--HHHHHHHHHHHTTCEEEEEESSG
T ss_pred EEECCCCH--HHHHHHHHHHHCCCEEEEEECCH
T ss_conf 99999778--99999999997889899995795
No 372
>>1sxj_C Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ ATPase, DNA polymerase; HET: ATG ADP; 2.85A {Saccharomyces cerevisiae} (C:1-168)
Probab=41.65 E-value=13 Score=17.47 Aligned_cols=25 Identities=40% Similarity=0.632 Sum_probs=18.8
Q ss_pred EEEECCEEECCCCCCHHHHHHHHHHHHC
Q ss_conf 8998230007888748999999998524
Q gi|254780401|r 46 VICVGGFVMGGTGKTPTALAIAKAVIDK 73 (338)
Q Consensus 46 VI~VGNitvGGtGKTP~v~~l~~~l~~~ 73 (338)
++-.|- -|+|||.++.++|+.+...
T Consensus 49 ~ll~Gp---pG~GKt~~a~~~a~~l~~~ 73 (168)
T 1sxj_C 49 LLFYGP---PGTGKTSTIVALAREIYGK 73 (168)
T ss_dssp EEEECS---SSSSHHHHHHHHHHHHHTT
T ss_pred EEEECC---CCCCHHHHHHHHHHHHCCC
T ss_conf 998897---9999999999999874045
No 373
>>3ber_A Probable ATP-dependent RNA helicase DDX47; DEAD, AMP, structural genomics, structural genomics consortium, SGC, ATP-binding, hydrolase; HET: AMP PGE; 1.40A {Homo sapiens} (A:)
Probab=41.53 E-value=23 Score=15.68 Aligned_cols=94 Identities=18% Similarity=0.220 Sum_probs=41.7
Q ss_pred CCCCCCHH-HHHHHHHHHHCCCCEEEEEECCCCCCCCCEEEECCCCCHHHHCCHHHHHHHCC----CCCCCCCHHHHHHH
Q ss_conf 78887489-99999998524731598760457877775587145678877042123322057----63465201225664
Q gi|254780401|r 55 GGTGKTPT-ALAIAKAVIDKNLKPGFLSRGYGRKSRISFRVDLEKHSAYDVGDEPLLLARRA----VTIVTSDRKIGVQM 129 (338)
Q Consensus 55 GGtGKTP~-v~~l~~~l~~~g~~~~ilsRGYg~~~~~~~~v~~~~~~~~~vGDEp~lla~~~----pv~V~~~R~~~~~~ 129 (338)
=|||||-. ++-+...+......... ..+.+....+..+-.+...++... .++++......-..
T Consensus 89 TGsGKTlayllp~l~~l~~~~~~~~~------------~~~~p~~el~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 156 (249)
T 3ber_A 89 TGSGKTGAFALPILNALLETPQRLFA------------LVLTPTRELAFQISEQFEALGSSIGVQSAVIVGGIDSMSQSL 156 (249)
T ss_dssp TTSCHHHHHHHHHHHHHHHSCCSSCE------------EEECSSHHHHHHHHHHHHHHHGGGTCCEEEECTTSCHHHHHH
T ss_pred CCCCCCCCCHHHHHCEECCCCCCCCC------------CCCCCCHHHHHHHHHHHHHCCCCCCCCCEEEECCHHHHHHHH
T ss_conf 76555311001000000135765454------------211775555555556653102446753001101101268999
Q ss_pred HCCCCCCEEEE-CCCCCC-----C-CCCCEEEEEEECC
Q ss_conf 10245747997-183223-----4-4123069999618
Q gi|254780401|r 130 LLQEGVDIIIM-DDGFHS-----A-DLQADFSLIVVNS 160 (338)
Q Consensus 130 ~~~~~~diiIl-DDGfQh-----~-~l~rdl~Ivl~d~ 160 (338)
..+.+++++|. --++.+ . ...+++..+++|-
T Consensus 157 ~l~~~~~iii~t~~~~~~~~~~~~~~~~~~ik~lVlDE 194 (249)
T 3ber_A 157 ALAKKPHIIIATPGRLIDHLENTKGFNLRALKYLVMDE 194 (249)
T ss_dssp HHHTCCSEEEECHHHHHHHHHHSTTCCCTTCCEEEECS
T ss_pred HHHCCCCEEEECCCCCEECCCCCCCCCHHHCEEEEECC
T ss_conf 98549976997897320024222442530011897444
No 374
>>1z0f_A RAB14, member RAS oncogene family; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 2.15A {Homo sapiens} (A:)
Probab=41.38 E-value=12 Score=17.56 Aligned_cols=25 Identities=20% Similarity=0.222 Sum_probs=16.9
Q ss_pred CCCCCEEEECCEEECCCCCCHHHHHHHH
Q ss_conf 3889889982300078887489999999
Q gi|254780401|r 41 HAPIPVICVGGFVMGGTGKTPTALAIAK 68 (338)
Q Consensus 41 ~~~~pVI~VGNitvGGtGKTP~v~~l~~ 68 (338)
...+.|+.||+ +|.|||-++..++.
T Consensus 13 ~~~~KivivGd---~~VGKTSli~r~~~ 37 (179)
T 1z0f_A 13 SYIFKYIIIGD---MGVGKSCLLHQFTE 37 (179)
T ss_dssp SEEEEEEEECS---TTSSHHHHHHHHHH
T ss_pred CEEEEEEEECC---CCCCHHHHHHHHHH
T ss_conf 76789999999---99198999999972
No 375
>>2efe_B Small GTP-binding protein-like; GEF, GTPase, VPS9, nucleotide, transport protein; HET: GNH; 2.08A {Arabidopsis thaliana} PDB: 2efd_B 2efc_B* 2efh_B* (B:)
Probab=41.11 E-value=12 Score=17.76 Aligned_cols=25 Identities=24% Similarity=0.410 Sum_probs=17.8
Q ss_pred CCCCCEEEECCEEECCCCCCHHHHHHHH
Q ss_conf 3889889982300078887489999999
Q gi|254780401|r 41 HAPIPVICVGGFVMGGTGKTPTALAIAK 68 (338)
Q Consensus 41 ~~~~pVI~VGNitvGGtGKTP~v~~l~~ 68 (338)
...+.|+.||+ +|+|||-++..+++
T Consensus 10 ~~~~KivivG~---~~vGKTSli~r~~~ 34 (181)
T 2efe_B 10 SINAKLVLLGD---VGAGKSSLVLRFVK 34 (181)
T ss_dssp CEEEEEEEECC---TTSCHHHHHHHHHH
T ss_pred CCCEEEEEECC---CCCCHHHHHHHHHH
T ss_conf 40549999899---99699999999985
No 376
>>1qhx_A CPT, protein (chloramphenicol phosphotransferase); kinase, antibiotic resistance, phosphorylation, mononucleotide binding fold; HET: ATP; 2.50A {Streptomyces venezuelae} (A:)
Probab=41.09 E-value=11 Score=17.82 Aligned_cols=27 Identities=22% Similarity=0.372 Sum_probs=18.6
Q ss_pred EEEECCEEECCCCCCHHHHHHHHHHHHCCC
Q ss_conf 899823000788874899999999852473
Q gi|254780401|r 46 VICVGGFVMGGTGKTPTALAIAKAVIDKNL 75 (338)
Q Consensus 46 VI~VGNitvGGtGKTP~v~~l~~~l~~~g~ 75 (338)
|+..|. -|+|||-++..|++.+....+
T Consensus 6 I~i~G~---~GsGKtTla~~La~~l~~~~i 32 (178)
T 1qhx_A 6 IILNGG---SSAGKSGIVRCLQSVLPEPWL 32 (178)
T ss_dssp EEEECC---TTSSHHHHHHHHHHHSSSCEE
T ss_pred EEEECC---CCCCHHHHHHHHHHHHCCCEE
T ss_conf 999899---999989999999998489979
No 377
>>3c3m_A Response regulator receiver protein; structural genomics, unknown function, PSI-2, protein structure initiative; HET: MSE; 1.70A {Methanoculleus marisnigri JR1} (A:1-108)
Probab=41.06 E-value=23 Score=15.63 Aligned_cols=25 Identities=16% Similarity=0.254 Sum_probs=12.5
Q ss_pred CCCCCCHHHHHHHHCCCCCCEEEEC
Q ss_conf 3465201225664102457479971
Q gi|254780401|r 117 TIVTSDRKIGVQMLLQEGVDIIIMD 141 (338)
Q Consensus 117 v~V~~~R~~~~~~~~~~~~diiIlD 141 (338)
|..+.+=.+|...+.+..+|+||+|
T Consensus 30 v~~a~~~~~al~~l~~~~~dliilD 54 (108)
T 3c3m_A 30 PITAFSGEECLEALNATPPDLVLLD 54 (108)
T ss_dssp EEEESSHHHHHHHHHHSCCSEEEEE
T ss_pred EEEECCCHHHHHHHHHHCCCCEEEC
T ss_conf 9983353118998864233204411
No 378
>>2a5j_A RAS-related protein RAB-2B; GTPase, signal transduction, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.50A {Homo sapiens} (A:)
Probab=41.00 E-value=13 Score=17.38 Aligned_cols=25 Identities=24% Similarity=0.327 Sum_probs=17.5
Q ss_pred CCCCCEEEECCEEECCCCCCHHHHHHHH
Q ss_conf 3889889982300078887489999999
Q gi|254780401|r 41 HAPIPVICVGGFVMGGTGKTPTALAIAK 68 (338)
Q Consensus 41 ~~~~pVI~VGNitvGGtGKTP~v~~l~~ 68 (338)
...+.|+.||+ +|.|||-++..++.
T Consensus 19 ~~~~KiviiGd---~gVGKTsli~r~~~ 43 (191)
T 2a5j_A 19 SYLFKYIIIGD---TGVGKSCLLLQFTD 43 (191)
T ss_dssp CEEEEEEEESS---TTSSHHHHHHHHHH
T ss_pred CEEEEEEEECC---CCCCHHHHHHHHHH
T ss_conf 65479999999---99698999999971
No 379
>>2c95_A Adenylate kinase 1; AP4A, nucleotide kinase, transferase, ATP-binding; HET: B4P; 1.71A {Homo sapiens} PDB: 1z83_A* 3adk_A (A:)
Probab=40.79 E-value=13 Score=17.35 Aligned_cols=27 Identities=26% Similarity=0.308 Sum_probs=18.5
Q ss_pred CCEEEECCEEECCCCCCHHHHHHHHHHHHC
Q ss_conf 988998230007888748999999998524
Q gi|254780401|r 44 IPVICVGGFVMGGTGKTPTALAIAKAVIDK 73 (338)
Q Consensus 44 ~pVI~VGNitvGGtGKTP~v~~l~~~l~~~ 73 (338)
.-|+.+|. -|+|||-++..|++.|.-.
T Consensus 10 ~~I~i~G~---~GsGKsTla~~La~~l~~~ 36 (196)
T 2c95_A 10 NIIFVVGG---PGSGKGTQCEKIVQKYGYT 36 (196)
T ss_dssp CEEEEEEC---TTSSHHHHHHHHHHHHCCE
T ss_pred CEEEEECC---CCCCHHHHHHHHHHHHCCE
T ss_conf 58999899---9998799999999985984
No 380
>>1g8p_A Magnesium-chelatase 38 kDa subunit; parallel beta sheet, P-loop, rossman fold, AAA+, photosynthesis, metal transport; 2.10A {Rhodobacter capsulatus} (A:1-218)
Probab=40.77 E-value=12 Score=17.56 Aligned_cols=27 Identities=30% Similarity=0.347 Sum_probs=19.6
Q ss_pred CCCEEEECCEEECCCCCCHHHHHHHHHHHH
Q ss_conf 898899823000788874899999999852
Q gi|254780401|r 43 PIPVICVGGFVMGGTGKTPTALAIAKAVID 72 (338)
Q Consensus 43 ~~pVI~VGNitvGGtGKTP~v~~l~~~l~~ 72 (338)
..||+-.|-= |||||-++..+++.+..
T Consensus 45 ~~~iLl~G~p---GtGKt~lAr~i~~~l~~ 71 (218)
T 1g8p_A 45 IGGVLVFGDR---GTGKSTAVRALAALLPE 71 (218)
T ss_dssp GCCEEEECCG---GGCTTHHHHHHHHHSCC
T ss_pred CCEEEEECCC---CCCHHHHHHHHHHHCCC
T ss_conf 9718997899---95699999999986676
No 381
>>3cf0_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48, acetylation, ATP-binding, cytoplasm, lipid-binding, nucleotide-binding; HET: ADP; 3.00A {Mus musculus} (A:1-185,A:283-301)
Probab=40.72 E-value=12 Score=17.76 Aligned_cols=32 Identities=31% Similarity=0.191 Sum_probs=21.1
Q ss_pred CCEEEECCEEECCCCCCHHHHHHHHHHHHCCCCEEEEE
Q ss_conf 98899823000788874899999999852473159876
Q gi|254780401|r 44 IPVICVGGFVMGGTGKTPTALAIAKAVIDKNLKPGFLS 81 (338)
Q Consensus 44 ~pVI~VGNitvGGtGKTP~v~~l~~~l~~~g~~~~ils 81 (338)
--|+-.|- -|||||=++.++|+.+. ..+..++
T Consensus 50 kgiLl~GP---pGTGKT~la~ala~~~~---~~~~~i~ 81 (204)
T 3cf0_A 50 KGVLFYGP---PGCGKTLLAKAIANECQ---ANFISIK 81 (204)
T ss_dssp SEEEEECS---SSSSHHHHHHHHHHHTT---CEEEEEC
T ss_pred CEEEEECC---CCCCEEHHHHHHHHHHC---CCEEEEE
T ss_conf 63687679---99960111343244518---7279988
No 382
>>3cpj_B GTP-binding protein YPT31/YPT8; RAB GTPase, prenylation, vesicular transport, acetylation, golgi apparatus, lipoprotein, membrane; HET: GDP; 2.35A {Saccharomyces cerevisiae} (B:)
Probab=40.60 E-value=13 Score=17.55 Aligned_cols=25 Identities=20% Similarity=0.385 Sum_probs=17.2
Q ss_pred CCCCCEEEECCEEECCCCCCHHHHHHHH
Q ss_conf 3889889982300078887489999999
Q gi|254780401|r 41 HAPIPVICVGGFVMGGTGKTPTALAIAK 68 (338)
Q Consensus 41 ~~~~pVI~VGNitvGGtGKTP~v~~l~~ 68 (338)
...+.|+.||+ ||.|||-++..++.
T Consensus 11 ~~~~KiviiGd---~gVGKTsLi~rf~~ 35 (223)
T 3cpj_B 11 DLLFKIVLIGD---SGVGKSNLLSRFTK 35 (223)
T ss_dssp CEEEEEEEESC---TTSSHHHHHHHHHH
T ss_pred CEEEEEEEECC---CCCCHHHHHHHHHH
T ss_conf 66889999999---99299999999971
No 383
>>2d7d_A Uvrabc system protein B; helicase, protein-DNA-ADP ternary complex, hydrolase/DNA complex; HET: ADP; 2.10A {Bacillus subtilis} PDB: 2nmv_A* 2fdc_A* 1t5l_A 1d9z_A* 1d9x_A 2d7d_B* 2nmv_B* (A:1-145,A:250-415)
Probab=40.58 E-value=17 Score=16.58 Aligned_cols=24 Identities=33% Similarity=0.331 Sum_probs=18.1
Q ss_pred CCCCCCHHHHHHHHHHHHCCCCEEEEE
Q ss_conf 788874899999999852473159876
Q gi|254780401|r 55 GGTGKTPTALAIAKAVIDKNLKPGFLS 81 (338)
Q Consensus 55 GGtGKTP~v~~l~~~l~~~g~~~~ils 81 (338)
=|||||=+.+..+. +.|.++.|++
T Consensus 41 tGsGKT~va~~~i~---~~~~~vlilv 64 (311)
T 2d7d_A 41 TGTGKTFTVSNLIK---EVNKPTLVIA 64 (311)
T ss_dssp TTSCHHHHHHHHHH---HHCCCEEEEC
T ss_pred CCCHHHHHHHHHHH---HHCCCEEEEC
T ss_conf 87499999999999---8499989991
No 384
>>1oyw_A RECQ helicase, ATP-dependent DNA helicase; winged helix, helix-turn-helix, ATP binding, Zn(2+) binding, hydrolase; 1.80A {Escherichia coli} (A:1-209)
Probab=40.58 E-value=18 Score=16.37 Aligned_cols=92 Identities=13% Similarity=-0.040 Sum_probs=54.6
Q ss_pred CCCCCCHHHHHHHHHHHHCCCCEEEEEECCCCCCCCCEEEECCCCCHHHHCCHHHHHHHCCC----CCCCCCHHHHHHHH
Q ss_conf 78887489999999985247315987604578777755871456788770421233220576----34652012256641
Q gi|254780401|r 55 GGTGKTPTALAIAKAVIDKNLKPGFLSRGYGRKSRISFRVDLEKHSAYDVGDEPLLLARRAV----TIVTSDRKIGVQML 130 (338)
Q Consensus 55 GGtGKTP~v~~l~~~l~~~g~~~~ilsRGYg~~~~~~~~v~~~~~~~~~vGDEp~lla~~~p----v~V~~~R~~~~~~~ 130 (338)
=|+|||-.- ..-.+. .+.+..|++ +....+.++.++...+....+ +..+..........
T Consensus 49 TGsGKT~~~--~~~~~~-~~~~~lii~--------------Pt~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 111 (209)
T 1oyw_A 49 TGGGKSLCY--QIPALL-LNGLTVVVS--------------PLISLXKDQVDQLQANGVAAACLNSTQTREQQLEVXTGC 111 (209)
T ss_dssp CHHHHHHHH--HHHHHH-SSSEEEEEC--------------SCHHHHHHHHHHHHHTTCCEEEECTTSCHHHHHHHHHHH
T ss_pred CCCHHHHHH--HHHHHH-HCCCEEEEC--------------CHHHHHHHHHHHHHHHCCEEEEEECCCCHHHHHHHHHHH
T ss_conf 984699999--999998-089689988--------------769999999999998497599995888799999999741
Q ss_pred CCCCCCEEEECCC-----CC-CCCCCCEEEEEEECCCCC
Q ss_conf 0245747997183-----22-344123069999618433
Q gi|254780401|r 131 LQEGVDIIIMDDG-----FH-SADLQADFSLIVVNSHRG 163 (338)
Q Consensus 131 ~~~~~diiIlDDG-----fQ-h~~l~rdl~Ivl~d~~~~ 163 (338)
...++++++.--| .+ .....+.+..+++|--+-
T Consensus 112 ~~~~~~ivi~tp~~l~~~~~~~~~~l~~i~~vViDEad~ 150 (209)
T 1oyw_A 112 RTGQIRLLYIAPERLXLDNFLEHLAHWNPVLLAVDEAHC 150 (209)
T ss_dssp HHTCCSEEEECHHHHTSTTHHHHHTTSCEEEEEESSGGG
T ss_pred HCCCCEEEECCHHHHHHHHHHHHHHHCCEEEEECCCCEE
T ss_conf 238851886173887655555554303425640454301
No 385
>>2zkl_A Capsular polysaccharide synthesis enzyme CAP5F; rossmann fold, isomerase; 2.61A {Staphylococcus aureus} (A:1-130)
Probab=40.42 E-value=24 Score=15.56 Aligned_cols=32 Identities=9% Similarity=0.067 Sum_probs=26.0
Q ss_pred EEECCCCCCHHHHHHHHHHHHCCCCEEEEEECCC
Q ss_conf 0007888748999999998524731598760457
Q gi|254780401|r 52 FVMGGTGKTPTALAIAKAVIDKNLKPGFLSRGYG 85 (338)
Q Consensus 52 itvGGtGKTP~v~~l~~~l~~~g~~~~ilsRGYg 85 (338)
+.+||||.. =.+|++.|.++|+.+.+.+|--.
T Consensus 4 lVtGasGfi--G~~lv~~L~~~g~~v~~~~~~~~ 35 (130)
T 2zkl_A 4 VITGAKGFV--GKNLKADLTSTTDHHIFEVHRQT 35 (130)
T ss_dssp EEETTTSHH--HHHHHHHHHHHCCCEEEEECTTC
T ss_pred EEECCCCHH--HHHHHHHHHHCCCEEEEEECCCC
T ss_conf 999999779--99999999857994999967989
No 386
>>2cdn_A Adenylate kinase; phosphoryl transfer, associative mechanism, ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase; HET: ADP; 1.9A {Mycobacterium tuberculosis} (A:)
Probab=40.41 E-value=14 Score=17.28 Aligned_cols=25 Identities=28% Similarity=0.383 Sum_probs=17.8
Q ss_pred EEEECCEEECCCCCCHHHHHHHHHHHHC
Q ss_conf 8998230007888748999999998524
Q gi|254780401|r 46 VICVGGFVMGGTGKTPTALAIAKAVIDK 73 (338)
Q Consensus 46 VI~VGNitvGGtGKTP~v~~l~~~l~~~ 73 (338)
|+.+|. -|+|||-++..|++.|...
T Consensus 23 I~i~G~---~GsGKsTla~~La~~l~~~ 47 (201)
T 2cdn_A 23 VLLLGP---PGAGKGTQAVKLAEKLGIP 47 (201)
T ss_dssp EEEECC---TTSSHHHHHHHHHHHHTCC
T ss_pred EEEECC---CCCCHHHHHHHHHHHHCCE
T ss_conf 999899---9999899999999997990
No 387
>>2b0c_A Putative phosphatase; alpha-D-glucose-1-phosphate, structural genomics, PSI, protein structure initiative; HET: G1P; 2.00A {Escherichia coli K12} (A:1-16,A:94-206)
Probab=40.36 E-value=24 Score=15.56 Aligned_cols=86 Identities=16% Similarity=0.103 Sum_probs=48.0
Q ss_pred CHHHHHHHHHHHHCCCCEEEEEECCCCCCCCCEEEECC-------CCCHHHHC-----CHHHHHHH-C---C--CCCCCC
Q ss_conf 48999999998524731598760457877775587145-------67887704-----21233220-5---7--634652
Q gi|254780401|r 60 TPTALAIAKAVIDKNLKPGFLSRGYGRKSRISFRVDLE-------KHSAYDVG-----DEPLLLAR-R---A--VTIVTS 121 (338)
Q Consensus 60 TP~v~~l~~~l~~~g~~~~ilsRGYg~~~~~~~~v~~~-------~~~~~~vG-----DEp~lla~-~---~--pv~V~~ 121 (338)
.|=+..+.+.|+++|++++++|.++.........-... --+..+++ .|.+..+. . . .+++-.
T Consensus 16 ~Pgv~e~L~~L~~~g~~i~i~Tn~~~~~~~~~~~~~~gl~~~fd~v~~~~~~~~~KP~~~~~~~~~~~~g~~p~~~i~Ig 95 (129)
T 2b0c_A 16 NPEVIAIMHKLREQGHRVVVLSNTNRLHTTFWPEEYPEIRDAADHIYLSQDLGMRKPEARIYQHVLQAEGFSPSDTVFFD 95 (129)
T ss_dssp THHHHHHHHHHHHTTCEEEEEECCCCCTTSCCGGGCHHHHHHCSEEEEHHHHTCCTTCHHHHHHHHHHHTCCGGGEEEEE
T ss_pred CCHHHHHHHHHHHCCCCEEEECCCCHHHHHHHHHHCCCCCCCCCEEEEECCCCCCCHHHHHHHHHHHHCCCCCCEEEEEC
T ss_conf 92067899999865982676316208999998752225354543898721355420267899999997398921089990
Q ss_pred CHHHHHHHHCCCCCCEEEECCCCC
Q ss_conf 012256641024574799718322
Q gi|254780401|r 122 DRKIGVQMLLQEGVDIIIMDDGFH 145 (338)
Q Consensus 122 ~R~~~~~~~~~~~~diiIlDDGfQ 145 (338)
|....+..+.+.|...|...+|-+
T Consensus 96 D~~~di~~a~~~Gi~~i~v~~~~~ 119 (129)
T 2b0c_A 96 DNADNIEGANQLGITSILVKDKTT 119 (129)
T ss_dssp SCHHHHHHHHTTTCEEEECCSTTH
T ss_pred CCHHHHHHHHHCCCEEEEECCCCC
T ss_conf 898889999986998999999652
No 388
>>2r62_A Cell division protease FTSH homolog; ATPase domain, ATP-binding, cell cycle, hydrolase, membrane metal-binding, metalloprotease; 3.30A {Helicobacter pylori} PDB: 2r65_A* (A:1-184)
Probab=40.28 E-value=14 Score=17.26 Aligned_cols=19 Identities=42% Similarity=0.312 Sum_probs=16.2
Q ss_pred CCCCCCHHHHHHHHHHHHC
Q ss_conf 7888748999999998524
Q gi|254780401|r 55 GGTGKTPTALAIAKAVIDK 73 (338)
Q Consensus 55 GGtGKTP~v~~l~~~l~~~ 73 (338)
-|||||=++.++|..+...
T Consensus 53 pGtGKT~la~ala~~~~~~ 71 (184)
T 2r62_A 53 PGTGKTLLAKAVAGEAHVP 71 (184)
T ss_dssp SCSSHHHHHHHHHHHHTCC
T ss_pred CCCCCHHHHHHHHHHCCCC
T ss_conf 9987016999999874998
No 389
>>2o2x_A Hypothetical protein; NP_103874.1, structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PSI-2; 1.50A {Mesorhizobium loti} (A:)
Probab=40.27 E-value=24 Score=15.55 Aligned_cols=76 Identities=13% Similarity=0.113 Sum_probs=44.0
Q ss_pred CCCCHHHHHHHHHHHCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCC--EEEECHHHHHHCCCCCCCCHHHHCCEEEEE
Q ss_conf 155357899988740100001221433234898999999997564798--799854663438233344111220517887
Q gi|254780401|r 230 GIADTEKFFTTVRQLGALIEQCYSFGDHAHLSDKKIAYLLDQAQQKGL--ILVTTAKDAMRLHKRPGRAEEIFAKSMVIE 307 (338)
Q Consensus 230 GIa~P~~F~~~L~~~g~~i~~~~~fpDHh~ys~~dl~~i~~~a~~~~~--~iiTTEKD~VKL~~~~~~~~~l~~~~~~l~ 307 (338)
.--+|+.|...++.+|+.....+..-|+ ..|+.. |++.+. ..|.+..+...- .....
T Consensus 136 ~Kp~p~~~~~~~~~lg~~p~~~v~vgDs----~~Di~a----A~~~G~~~i~v~~~~~~~~~-------------l~~~~ 194 (218)
T 2o2x_A 136 RKPNPGXLVEAGKRLALDLQRSLIVGDK----LADXQA----GKRAGLAQGWLVDGEAAVQP-------------GFAIR 194 (218)
T ss_dssp STTSCHHHHHHHHHHTCCGGGCEEEESS----HHHHHH----HHHTTCSEEEEETCCCEEET-------------TEEEE
T ss_pred CCCCHHHHHHHHHHHCCCCCCEEEECCC----HHHHHH----HHHCCCCEEEEECCCCCCCC-------------CCCCC
T ss_conf 3541268999998738994103785796----888999----99879948999379865677-------------75456
Q ss_pred EEEEECCHHHHHHHHHHHH
Q ss_conf 6989578789999999999
Q gi|254780401|r 308 VDIVFENPDDLTNLVEMTV 326 (338)
Q Consensus 308 i~~~~~~~~~l~~~l~~~i 326 (338)
....+++-.+|...|++..
T Consensus 195 ~~~~i~~l~el~~~l~~~~ 213 (218)
T 2o2x_A 195 PLRDSSELGDLLAAIETLG 213 (218)
T ss_dssp EESSHHHHHHHHHHHHHTC
T ss_pred CCCCHHHHHHHHHHHHHHH
T ss_conf 7641407776999999998
No 390
>>1o51_A Hypothetical protein TM0021; structural genomics, JCSG, PSI, protein structure initiative, joint center for structural genomics; HET: ADP; 2.50A {Thermotoga maritima} (A:)
Probab=40.17 E-value=23 Score=15.66 Aligned_cols=28 Identities=18% Similarity=0.115 Sum_probs=24.5
Q ss_pred CCHHHHHHHHHHHHCCCCEEEEEECCCC
Q ss_conf 7489999999985247315987604578
Q gi|254780401|r 59 KTPTALAIAKAVIDKNLKPGFLSRGYGR 86 (338)
Q Consensus 59 KTP~v~~l~~~l~~~g~~~~ilsRGYg~ 86 (338)
.-|+..||++.+++.|..=+.+-||.-|
T Consensus 28 g~pl~~~il~~~~~~Gi~GaTv~rgi~G 55 (114)
T 1o51_A 28 GKPLFEYLVKRAYELGXKGVTVYRGIXG 55 (114)
T ss_dssp TEEHHHHHHHHHHHTTCSCCEEEECSCC
T ss_pred CEEHHHHHHHHHHHCCCCCEEEEEEEEE
T ss_conf 5399999999999879981799930255
No 391
>>3bc1_A RAS-related protein RAB-27A; RAB27, GTPase, RAB, signaling protein, GDPNP, SLP2A, exophilin-4, GTP-binding, lipoprotein, membrane, methylation; HET: GNP; 1.80A {Mus musculus} PDB: 2iey_A* 2if0_A* 2zet_A* (A:)
Probab=40.16 E-value=14 Score=17.20 Aligned_cols=25 Identities=24% Similarity=0.400 Sum_probs=16.4
Q ss_pred CCCCCEEEECCEEECCCCCCHHHHHHHH
Q ss_conf 3889889982300078887489999999
Q gi|254780401|r 41 HAPIPVICVGGFVMGGTGKTPTALAIAK 68 (338)
Q Consensus 41 ~~~~pVI~VGNitvGGtGKTP~v~~l~~ 68 (338)
...+.||.||+ +|.|||-++..+++
T Consensus 9 ~~~~KivliGd---~gVGKTsll~rf~~ 33 (195)
T 3bc1_A 9 DYLIKFLALGD---SGVGKTSVLYQYTD 33 (195)
T ss_dssp SEEEEEEEECS---TTSSHHHHHHHHHH
T ss_pred CEEEEEEEECC---CCCCHHHHHHHHHH
T ss_conf 76899999998---99598999999983
No 392
>>1kag_A SKI, shikimate kinase I; transferase, structural genomics, PSI, protein structure initiative; 2.05A {Escherichia coli} (A:)
Probab=39.98 E-value=12 Score=17.68 Aligned_cols=16 Identities=25% Similarity=0.436 Sum_probs=13.0
Q ss_pred CCCCCCHHHHHHHHHH
Q ss_conf 7888748999999998
Q gi|254780401|r 55 GGTGKTPTALAIAKAV 70 (338)
Q Consensus 55 GGtGKTP~v~~l~~~l 70 (338)
-|+|||-++..|++.+
T Consensus 13 ~GsGKsTla~~La~~~ 28 (173)
T 1kag_A 13 MGAGKSTIGRQLAQQL 28 (173)
T ss_dssp TTSCHHHHHHHHHHHT
T ss_pred CCCCHHHHHHHHHHHH
T ss_conf 9998899999999995
No 393
>>1fzq_A ADP-ribosylation factor-like protein 3; protein-GDP complex without magnesium, ARF family, RAS superfamily, G-domain, signaling protein; HET: MES GDP; 1.70A {Mus musculus} (A:)
Probab=39.92 E-value=22 Score=15.77 Aligned_cols=29 Identities=17% Similarity=0.211 Sum_probs=19.0
Q ss_pred HCCCCCCCCCEEEECCEEECCCCCCHHHHHHH
Q ss_conf 04643388988998230007888748999999
Q gi|254780401|r 36 RGQRLHAPIPVICVGGFVMGGTGKTPTALAIA 67 (338)
Q Consensus 36 ~~~~~~~~~pVI~VGNitvGGtGKTP~v~~l~ 67 (338)
.......++.|+.||+ +|+|||-++..+.
T Consensus 9 ~~~~~~~~~kivivG~---~~vGKTSli~r~~ 37 (181)
T 1fzq_A 9 LKSAPDQEVRILLLGL---DNAGKTTLLKQLA 37 (181)
T ss_dssp CSSCCSSCEEEEEEES---TTSSHHHHHHHHC
T ss_pred CCCCCCCCCEEEEECC---CCCCHHHHHHHHH
T ss_conf 3026888668999999---9989999999996
No 394
>>3c3w_A Two component transcriptional regulatory protein DEVR; response regulator, two-component regulatory system, DNA- binding protein; 2.20A {Mycobacterium tuberculosis} (A:1-99,A:196-225)
Probab=39.91 E-value=16 Score=16.79 Aligned_cols=44 Identities=11% Similarity=0.169 Sum_probs=27.0
Q ss_pred CCCCCHHHHHHHHCCCCCCEEEEC------CCCCC----CCCCCEEEEEEECCC
Q ss_conf 465201225664102457479971------83223----441230699996184
Q gi|254780401|r 118 IVTSDRKIGVQMLLQEGVDIIIMD------DGFHS----ADLQADFSLIVVNSH 161 (338)
Q Consensus 118 ~V~~~R~~~~~~~~~~~~diiIlD------DGfQh----~~l~rdl~Ivl~d~~ 161 (338)
..+.|=.++.+.+.+..+|+||+| ||++- ++...+..|+++.+.
T Consensus 31 ~~a~~g~eal~~i~~~~pDiiilDi~LP~~dGleli~~Ik~~~p~~~IIvlS~~ 84 (129)
T 3c3w_A 31 GEAGSVAEAMARVPAARPDVAVLDVRLPDGNGIELCRDLLSRMPDLRCLILTSY 84 (129)
T ss_dssp EEESSHHHHHHHHHHHCCSEEEECSEETTEEHHHHHHHHHHHCTTCEEEEGGGS
T ss_pred EEECCHHHHHHHHHHCCCCEEEEECCCCCCCCCHHHHHHHHHCCCCCCCCCCCC
T ss_conf 997999999999986699879982568999963143322220456444444345
No 395
>>3h0k_A UPF0200 protein SSO1041; adenylate, kinase, structural genomics, PSI-2, protein structure initiative; 3.25A {Sulfolobus solfataricus} (A:)
Probab=39.76 E-value=15 Score=16.91 Aligned_cols=21 Identities=33% Similarity=0.449 Sum_probs=13.1
Q ss_pred ECCCCCCHHHHHHHHHHHHCCCCEE
Q ss_conf 0788874899999999852473159
Q gi|254780401|r 54 MGGTGKTPTALAIAKAVIDKNLKPG 78 (338)
Q Consensus 54 vGGtGKTP~v~~l~~~l~~~g~~~~ 78 (338)
.-|||||- +++.|.+.|+.+.
T Consensus 8 ~~GsGKsT----~a~~L~~~~~~~~ 28 (178)
T 3h0k_A 8 MPGSGKSE----FAKLLKERGAKVI 28 (178)
T ss_dssp CTTSCHHH----HHHHHHHTSCEEE
T ss_pred CCCCCHHH----HHHHHHHCCCCEE
T ss_conf 99999999----9999998799499
No 396
>>1tue_A Replication protein E1; helicase, replication, E1E2 complex, AAA+ protein; 2.10A {Human papillomavirus type 18} (A:)
Probab=39.76 E-value=12 Score=17.75 Aligned_cols=32 Identities=13% Similarity=0.119 Sum_probs=22.2
Q ss_pred CCCCCCCEEEECCEEECCCCCCHHHHHHHHHHHHC
Q ss_conf 43388988998230007888748999999998524
Q gi|254780401|r 39 RLHAPIPVICVGGFVMGGTGKTPTALAIAKAVIDK 73 (338)
Q Consensus 39 ~~~~~~pVI~VGNitvGGtGKTP~v~~l~~~l~~~ 73 (338)
....+.-++-.| -||||||-+...|++.+-..
T Consensus 54 ~~~~~~~~~l~G---~~g~GKstl~~~l~~~~g~~ 85 (212)
T 1tue_A 54 GTPKKNCLVFCG---PANTGKSYFGMSFIHFIQGA 85 (212)
T ss_dssp TCTTCSEEEEES---CGGGCHHHHHHHHHHHHTCE
T ss_pred CCCCCCEEEEEC---CCCCCHHHHHHHHHHHHCCE
T ss_conf 898751899988---99855889999999984772
No 397
>>1kjq_A GART 2, phosphoribosylglycinamide formyltransferase 2, 5'-; ATP-grAsp, purine biosynthesis, nucleotide; HET: ADP MPO; 1.05A {Escherichia coli} (A:1-125)
Probab=39.74 E-value=24 Score=15.49 Aligned_cols=20 Identities=5% Similarity=-0.125 Sum_probs=10.4
Q ss_pred HHHHHHHHHHHHCCCCEEEE
Q ss_conf 89999999985247315987
Q gi|254780401|r 61 PTALAIAKAVIDKNLKPGFL 80 (338)
Q Consensus 61 P~v~~l~~~l~~~g~~~~il 80 (338)
+....+++.+++.|+.+.++
T Consensus 21 ~~~~~l~~~a~~~g~~~~~~ 40 (125)
T 1kjq_A 21 ELGKEVAIECQRLGVEVIAV 40 (125)
T ss_dssp HHHHHHHHHHHTTTCEEEEE
T ss_pred HHHHHHHHHHHHCCCEEEEE
T ss_conf 99999999999879989999
No 398
>>2go7_A Hydrolase, haloacid dehalogenase-like family; NP_346487.1, structural genomics, PSI, protein structure initiative; 2.10A {Streptococcus pneumoniae TIGR4} (A:1-15,A:86-207)
Probab=39.72 E-value=23 Score=15.70 Aligned_cols=100 Identities=12% Similarity=0.074 Sum_probs=52.1
Q ss_pred ECCCCCCHHHHHHHHHHHHCCCCEEEEEECCCCCCCCCEEEECCCCCHHHHCCHHHHHHHC--CCCCCCCCHHHHHHHHC
Q ss_conf 0788874899999999852473159876045787777558714567887704212332205--76346520122566410
Q gi|254780401|r 54 MGGTGKTPTALAIAKAVIDKNLKPGFLSRGYGRKSRISFRVDLEKHSAYDVGDEPLLLARR--AVTIVTSDRKIGVQMLL 131 (338)
Q Consensus 54 vGGtGKTP~v~~l~~~l~~~g~~~~ilsRGYg~~~~~~~~v~~~~~~~~~vGDEp~lla~~--~pv~V~~~R~~~~~~~~ 131 (338)
..||==.|-+.-+.+.|+++|++++|+|.++..-.. .....|-.++.-.-. ..+...+...+....+.
T Consensus 11 ~~~~~l~pgv~~~L~~L~~~g~~i~i~Sn~~~~~~~----------~l~~~~l~~~f~~i~~s~~~~~~Kp~p~~~~~~l 80 (137)
T 2go7_A 11 LDGTLLXPGAREVLAWADESGIQQFIYTHKGNNAFT----------ILKDLGVESYFTEILTSQSGFVRKPSPEAATYLL 80 (137)
T ss_dssp TBTTTECTTHHHHHHHHHHTTCEEEEECSSCTHHHH----------HHHHHTCGGGEEEEECGGGCCCCTTSSHHHHHHH
T ss_pred CCCCCCCCHHHHHHHCCCCCCCCHHHHCCHHHHHHH----------HHHHCCCCCCCCCCCCCCCCCCCHHHHHHHHHHH
T ss_conf 899776625777653111222210332000577777----------6642012212222223322222102578789999
Q ss_pred -CC---CCCEEEECCCCCCCCCCCEEEEEEECCCCC
Q ss_conf -24---574799718322344123069999618433
Q gi|254780401|r 132 -QE---GVDIIIMDDGFHSADLQADFSLIVVNSHRG 163 (338)
Q Consensus 132 -~~---~~diiIlDDGfQh~~l~rdl~Ivl~d~~~~ 163 (338)
+. ..+++..+|...+....+...+-.+-..++
T Consensus 81 ~~~~~~~~~~l~IgD~~~Di~aA~~aG~~~i~v~~~ 116 (137)
T 2go7_A 81 DKYQLNSDNTYYIGDRTLDVEFAQNSGIQSINFLES 116 (137)
T ss_dssp HHHTCCGGGEEEEESSHHHHHHHHHHTCEEEESSCC
T ss_pred HHHCCCCCCEEEEECCHHHHHHHHHCCCEEEEECCC
T ss_conf 995899771799957999999999869969998579
No 399
>>1n7h_A GDP-D-mannose-4,6-dehydratase; rossmann fold, SDR, short-chain dehydrogenase/reductase, lyase; HET: NDP GDP; 1.80A {Arabidopsis thaliana} (A:)
Probab=39.65 E-value=24 Score=15.48 Aligned_cols=33 Identities=18% Similarity=0.202 Sum_probs=26.5
Q ss_pred EEECCCCCCHHHHHHHHHHHHCCCCEEEEEECCCC
Q ss_conf 00078887489999999985247315987604578
Q gi|254780401|r 52 FVMGGTGKTPTALAIAKAVIDKNLKPGFLSRGYGR 86 (338)
Q Consensus 52 itvGGtGKTP~v~~l~~~l~~~g~~~~ilsRGYg~ 86 (338)
+.+|||| =+=.+|++.|.++|+.+.++.|.-.+
T Consensus 32 LITGatG--fiG~~lv~~Ll~~g~~v~~~~~~~~~ 64 (381)
T 1n7h_A 32 LITGITG--QDGSYLTEFLLGKGYEVHGLIRRSSN 64 (381)
T ss_dssp EEETTTS--HHHHHHHHHHHHTTCEEEEEECCCSS
T ss_pred EEECCCC--HHHHHHHHHHHHCCCEEEEEECCCCC
T ss_conf 9937862--89999999999785989999788865
No 400
>>2erx_A GTP-binding protein DI-RAS2; GTP hydrolysis, transport protein; HET: GDP; 1.65A {Homo sapiens} (A:)
Probab=39.61 E-value=12 Score=17.56 Aligned_cols=22 Identities=36% Similarity=0.601 Sum_probs=15.0
Q ss_pred CCEEEECCEEECCCCCCHHHHHHHH
Q ss_conf 9889982300078887489999999
Q gi|254780401|r 44 IPVICVGGFVMGGTGKTPTALAIAK 68 (338)
Q Consensus 44 ~pVI~VGNitvGGtGKTP~v~~l~~ 68 (338)
+.|+.||+ +|.|||-++..+.+
T Consensus 4 ~KiviiGd---~~vGKTsli~~~~~ 25 (172)
T 2erx_A 4 YRVAVFGA---GGVGKSSLVLRFVK 25 (172)
T ss_dssp EEEEEECC---TTSSHHHHHHHHHT
T ss_pred CEEEEECC---CCCCHHHHHHHHHC
T ss_conf 18999997---99799999999960
No 401
>>2qjw_A Uncharacterized protein XCC1541; NP_636912.1, structural genomics, joint center for structural genomics, JCSG; HET: MSE TLA P6G; 1.35A {Xanthomonas campestris PV} (A:)
Probab=39.35 E-value=19 Score=16.18 Aligned_cols=84 Identities=8% Similarity=-0.060 Sum_probs=45.6
Q ss_pred CCCCCCHHHHHHHHHHHHCCCCEEEE-EECCCCCCCCCEEEECCCCCHHHHC-CHHHHHHH---CCCC-CCCCCH--HHH
Q ss_conf 78887489999999985247315987-6045787777558714567887704-21233220---5763-465201--225
Q gi|254780401|r 55 GGTGKTPTALAIAKAVIDKNLKPGFL-SRGYGRKSRISFRVDLEKHSAYDVG-DEPLLLAR---RAVT-IVTSDR--KIG 126 (338)
Q Consensus 55 GGtGKTP~v~~l~~~l~~~g~~~~il-sRGYg~~~~~~~~v~~~~~~~~~vG-DEp~lla~---~~pv-~V~~~R--~~~ 126 (338)
||+.-++....+++.|.++||.+..+ .||||++..... ..+..+.. |....+.. ..|+ ++|.+- ..+
T Consensus 14 ~~~~~~~~~~~~~~~l~~~G~~v~~~D~~G~G~s~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~l~G~S~Gg~~a 88 (176)
T 2qjw_A 14 ESGPDALKVTALAEVAERLGWTHERPDFTDLDARRDLGQ-----LGDVRGRLQRLLEIARAATEKGPVVLAGSSLGSYIA 88 (176)
T ss_dssp TCCTTSHHHHHHHHHHHHTTCEEECCCCHHHHTCGGGCT-----TCCHHHHHHHHHHHHHHHHTTSCEEEEEETHHHHHH
T ss_pred CCCCCCHHHHHHHHHHHHCCCEEEEEEECCCCCCCCCCC-----CCCHHHHHHHHHHHHHHHCCCCCEEEEEECCCCEEE
T ss_conf 989874399999999997799598640003677789977-----588899999999999970789998999863652466
Q ss_pred HHHHCCCCCCEEEECCC
Q ss_conf 66410245747997183
Q gi|254780401|r 127 VQMLLQEGVDIIIMDDG 143 (338)
Q Consensus 127 ~~~~~~~~~diiIlDDG 143 (338)
..++.+......++-.+
T Consensus 89 ~~~a~~~~~~~~v~~~~ 105 (176)
T 2qjw_A 89 AQVSLQVPTRALFLXVP 105 (176)
T ss_dssp HHHHTTSCCSEEEEESC
T ss_pred EECCCCCCCCCCCCCCC
T ss_conf 41002576433010343
No 402
>>2bwj_A Adenylate kinase 5; phosphoryl transfer reaction, transferase; HET: AMP; 2.3A {Homo sapiens} (A:)
Probab=39.29 E-value=15 Score=17.08 Aligned_cols=25 Identities=20% Similarity=0.307 Sum_probs=17.6
Q ss_pred CEEEECCEEECCCCCCHHHHHHHHHHHH
Q ss_conf 8899823000788874899999999852
Q gi|254780401|r 45 PVICVGGFVMGGTGKTPTALAIAKAVID 72 (338)
Q Consensus 45 pVI~VGNitvGGtGKTP~v~~l~~~l~~ 72 (338)
-|+..|- -|+|||-++..|++.+.-
T Consensus 14 ~I~i~G~---~GsGKtT~a~~La~~~~~ 38 (199)
T 2bwj_A 14 IIFIIGG---PGSGKGTQCEKLVEKYGF 38 (199)
T ss_dssp EEEEEEC---TTSSHHHHHHHHHHHHTC
T ss_pred EEEEECC---CCCCHHHHHHHHHHHHCC
T ss_conf 8999899---999989999999998499
No 403
>>2atv_A RERG, RAS-like estrogen-regulated growth inhibitor; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} (A:)
Probab=39.23 E-value=18 Score=16.45 Aligned_cols=26 Identities=19% Similarity=0.339 Sum_probs=16.8
Q ss_pred CCCCCCEEEECCEEECCCCCCHHHHHHHH
Q ss_conf 33889889982300078887489999999
Q gi|254780401|r 40 LHAPIPVICVGGFVMGGTGKTPTALAIAK 68 (338)
Q Consensus 40 ~~~~~pVI~VGNitvGGtGKTP~v~~l~~ 68 (338)
....+.|+.||+ +|.|||-++..++.
T Consensus 25 ~~~~~KivilGd---~~VGKTsli~r~~~ 50 (196)
T 2atv_A 25 KSAEVKLAIFGR---AGVGKSALVVRFLT 50 (196)
T ss_dssp --CCEEEEEECC---TTSSHHHHHHHHHH
T ss_pred CCCCEEEEEECC---CCCCHHHHHHHHHH
T ss_conf 898659999899---99799999999961
No 404
>>3dz8_A RAS-related protein RAB-3B; GDP, GTPase, structural genomics consortium, SGC, cell membrane, GTP-binding, lipoprotein, membrane, methylation; HET: GDP; 1.90A {Homo sapiens} (A:)
Probab=39.22 E-value=21 Score=15.97 Aligned_cols=35 Identities=14% Similarity=0.249 Sum_probs=21.8
Q ss_pred CCCCCCEEEECCEEECCCCCCHHHHHHHHHHHHCCCCE
Q ss_conf 33889889982300078887489999999985247315
Q gi|254780401|r 40 LHAPIPVICVGGFVMGGTGKTPTALAIAKAVIDKNLKP 77 (338)
Q Consensus 40 ~~~~~pVI~VGNitvGGtGKTP~v~~l~~~l~~~g~~~ 77 (338)
+...+.|+.||. +|+|||-++..++.---...+.+
T Consensus 20 ~~~~~KivivGd---~~vGKTSli~r~~~~~f~~~~~~ 54 (191)
T 3dz8_A 20 FDYMFKLLIIGN---SSVGKTSFLFRYADDTFTPAFVS 54 (191)
T ss_dssp EEECEEEEEEES---TTSSHHHHHHHHHHHTTCCCEEE
T ss_pred CCEEEEEEEECC---CCCCHHHHHHHHHCCCCCCCCCC
T ss_conf 573669999999---99398999999972988863266
No 405
>>2a35_A Hypothetical protein PA4017; alpha-beta-alpha sandwich, structural genomics, PSI, protein structure initiative; 1.50A {Pseudomonas aeruginosa PAO1} (A:)
Probab=39.22 E-value=25 Score=15.44 Aligned_cols=34 Identities=12% Similarity=0.184 Sum_probs=26.9
Q ss_pred EEECCCCCCHHHHHHHHHHHHCCCCEEEEEECCCCC
Q ss_conf 000788874899999999852473159876045787
Q gi|254780401|r 52 FVMGGTGKTPTALAIAKAVIDKNLKPGFLSRGYGRK 87 (338)
Q Consensus 52 itvGGtGKTP~v~~l~~~l~~~g~~~~ilsRGYg~~ 87 (338)
+.+||||.. =..|++.|.++|+.+.+++|.-...
T Consensus 9 lVtGatG~i--G~~i~~~L~~~g~~v~~~~~~~~~~ 42 (215)
T 2a35_A 9 LLAGATGLT--GEHLLDRILSEPTLAKVIAPARKAL 42 (215)
T ss_dssp EEECTTSHH--HHHHHHHHHHCTTCCEEECCBSSCC
T ss_pred EEECCCCHH--HHHHHHHHHHCCCEEEEEEEECCCC
T ss_conf 998799589--9999999997869689999727720
No 406
>>2iyv_A Shikimate kinase, SK; transferase, aromatic amino acid biosynthesis, P-loop kinase, metal- binding, shikimate pathway; HET: ADP; 1.35A {Mycobacterium tuberculosis} (A:1-169)
Probab=39.12 E-value=15 Score=17.05 Aligned_cols=23 Identities=35% Similarity=0.442 Sum_probs=15.9
Q ss_pred EEEECCEEECCCCCCHHHHHHHHHHH
Q ss_conf 89982300078887489999999985
Q gi|254780401|r 46 VICVGGFVMGGTGKTPTALAIAKAVI 71 (338)
Q Consensus 46 VI~VGNitvGGtGKTP~v~~l~~~l~ 71 (338)
|+.+|- -|+|||-++..|++.+.
T Consensus 5 I~i~G~---~GsGKtTiA~~La~~~~ 27 (169)
T 2iyv_A 5 AVLVGL---PGSGKSTIGRRLAKALG 27 (169)
T ss_dssp EEEECS---TTSSHHHHHHHHHHHHT
T ss_pred EEEECC---CCCCHHHHHHHHHHHHC
T ss_conf 999889---99988999999999959
No 407
>>3ipo_A Putative thiosulfate sulfurtransferase YNJE; triple-domain rhodanese; HET: PE4; 2.40A {Escherichia coli k-12} PDB: 3ipp_A (A:1-118)
Probab=38.89 E-value=16 Score=16.79 Aligned_cols=34 Identities=21% Similarity=0.262 Sum_probs=23.5
Q ss_pred CCCCC-C--CCHHHHHHHHCCCCC-CEEEECCCCCCCC
Q ss_conf 76346-5--201225664102457-4799718322344
Q gi|254780401|r 115 AVTIV-T--SDRKIGVQMLLQEGV-DIIIMDDGFHSAD 148 (338)
Q Consensus 115 ~pv~V-~--~~R~~~~~~~~~~~~-diiIlDDGfQh~~ 148 (338)
.+|+| | ..|..++..+.+.+. ++.++|+||+.++
T Consensus 78 ~~vi~~C~~G~rs~~a~~l~~~G~~~v~~l~GG~~~W~ 115 (118)
T 3ipo_A 78 APVALYGNDKDVDAVKTRLQKAGLTHISILSDALSEPS 115 (118)
T ss_dssp SCEEEESSHHHHHHHHHHHHHTTCCCEEEBTTTTSCGG
T ss_pred CCEEEEECCCCHHHHHHHHHHHCCCEEEEECCCCHHHH
T ss_conf 81899968734799999999828972799316513323
No 408
>>2vli_A Antibiotic resistance protein; transferase, tunicamycin, phosphotransferase; 1.95A {Deinococcus radiodurans} (A:)
Probab=38.69 E-value=14 Score=17.30 Aligned_cols=26 Identities=27% Similarity=0.234 Sum_probs=17.9
Q ss_pred EEEECCEEECCCCCCHHHHHHHHHHHHCC
Q ss_conf 89982300078887489999999985247
Q gi|254780401|r 46 VICVGGFVMGGTGKTPTALAIAKAVIDKN 74 (338)
Q Consensus 46 VI~VGNitvGGtGKTP~v~~l~~~l~~~g 74 (338)
|+..|- -|+|||-++..|++.|....
T Consensus 8 I~i~G~---~GsGKTTia~~La~~l~~~~ 33 (183)
T 2vli_A 8 IWINGP---FGVGKTHTAHTLHERLPGSF 33 (183)
T ss_dssp EEEECC---C----CHHHHHHHHHSTTCE
T ss_pred EEEECC---CCCCHHHHHHHHHHHHCCCE
T ss_conf 999899---99149999999999819996
No 409
>>1fx0_A ATP synthase alpha chain; latent ATPase, thermal stability, potential tentoxin binding site, hydrolase; 3.20A {Spinacia oleracea} (A:95-371)
Probab=38.69 E-value=23 Score=15.64 Aligned_cols=99 Identities=18% Similarity=0.129 Sum_probs=43.9
Q ss_pred CCEEECCCCCCHHHHHHHHHHHHCCCCEEEEEECCCCCCCCCEEEECCCCCHHHHCCHHHHHHHCCCCCCCC-----CHH
Q ss_conf 230007888748999999998524731598760457877775587145678877042123322057634652-----012
Q gi|254780401|r 50 GGFVMGGTGKTPTALAIAKAVIDKNLKPGFLSRGYGRKSRISFRVDLEKHSAYDVGDEPLLLARRAVTIVTS-----DRK 124 (338)
Q Consensus 50 GNitvGGtGKTP~v~~l~~~l~~~g~~~~ilsRGYg~~~~~~~~v~~~~~~~~~vGDEp~lla~~~pv~V~~-----~R~ 124 (338)
|=+.--|+|||-+...+++......-.+.+.-=|=++.. + ..-.++.=++. .+.+-+-|+-.. .|.
T Consensus 73 ~I~g~~g~GKT~Ll~~i~~~~~~~~~~~v~~~iGer~~e-----v---~e~~~~~~~~~-~~~~t~vv~~ts~~~~~~r~ 143 (277)
T 1fx0_A 73 LIIGDRQTGKTAVATDTILNQQGQNVICVYVAIGQKASS-----V---AQVVTNFQERG-AMEYTIVVAETADSPATLQY 143 (277)
T ss_dssp BEEESSSSSHHHHHHHHHHTCCTTTCEEEEEEESCCHHH-----H---HHHHHHTGGGT-GGGSEEEEEECTTSCGGGTT
T ss_pred EEECCCCCCHHHHHHHHHHHHCCCCCEEEEEEEEECHHH-----H---HHHHHHHCCCC-CCCCCCEECCCCCCCHHHHH
T ss_conf 513589996778999988765278858999972113899-----9---99999640278-63233100246667788888
Q ss_pred HH-------HHHHCCCCCC-EEEECCCCCCCCCCCEEEEEE
Q ss_conf 25-------6641024574-799718322344123069999
Q gi|254780401|r 125 IG-------VQMLLQEGVD-IIIMDDGFHSADLQADFSLIV 157 (338)
Q Consensus 125 ~~-------~~~~~~~~~d-iiIlDDGfQh~~l~rdl~Ivl 157 (338)
.+ |++....+-| ++++||=..|-+-.|.+...+
T Consensus 144 ~~~~~a~~~AE~~r~~G~~Vll~~Dsltr~a~A~reis~~~ 184 (277)
T 1fx0_A 144 LAPYTGAALAEYFMYRERHTLIIYDDLSKQAQAYRQMSLLL 184 (277)
T ss_dssp HHHHHHHHHHHHHHHTTCEEEEEEECHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHCCCCEEEEECCHHHHHHHHHHHHHHC
T ss_conf 88888989999999646772699618589999999999862
No 410
>>2r6h_A NADH:ubiquinone oxidoreductase, Na translocating, F subunit; alpha-beta-alpha sandwich, structural genomics, PSI-2; HET: FAD; 2.95A {Porphyromonas gingivalis W83} (A:152-290)
Probab=38.58 E-value=25 Score=15.37 Aligned_cols=37 Identities=16% Similarity=0.154 Sum_probs=24.3
Q ss_pred CCCEEEECCEEECCCCCCHHHHHHHHHHHHCC-CCEEEEEEC
Q ss_conf 89889982300078887489999999985247-315987604
Q gi|254780401|r 43 PIPVICVGGFVMGGTGKTPTALAIAKAVIDKN-LKPGFLSRG 83 (338)
Q Consensus 43 ~~pVI~VGNitvGGtGKTP~v~~l~~~l~~~g-~~~~ilsRG 83 (338)
..|+|. ..||||=||+.-.+-..++... .....+-=|
T Consensus 5 ~~~~il----iagG~GitP~~s~l~~~~~~~~~~~~v~l~~~ 42 (139)
T 2r6h_A 5 DAEXLY----IGGGAGXAPLRAQILHLFRTLKTGRKVSYWYG 42 (139)
T ss_dssp SCEEEE----EEEGGGHHHHHHHHHHHHHTSCCCSCEEEEEE
T ss_pred CCCEEE----EECCCCCCHHHHHHHHHHHHCCCCCEEEEEEC
T ss_conf 763578----84275136388999999873478861999706
No 411
>>3lnc_A Guanylate kinase, GMP kinase; ALS collaborative crystallography, emerald biostructures, ATP-binding, cytoplasm, nucleotide-binding; HET: 5GP; 1.95A {Anaplasma phagocytophilum} (A:1-59,A:109-215)
Probab=38.57 E-value=12 Score=17.57 Aligned_cols=34 Identities=15% Similarity=0.052 Sum_probs=25.7
Q ss_pred CCCEEEECCEEECCCCCCHHHHHHHHHHHHCCCCEEEE
Q ss_conf 89889982300078887489999999985247315987
Q gi|254780401|r 43 PIPVICVGGFVMGGTGKTPTALAIAKAVIDKNLKPGFL 80 (338)
Q Consensus 43 ~~pVI~VGNitvGGtGKTP~v~~l~~~l~~~g~~~~il 80 (338)
.-.||+|.++. |.|||-.++.++..|++ +++-.+
T Consensus 26 ~~~~~~~~~~~--~~gk~~~~~~~~~~~~~--~~~~~~ 59 (166)
T 3lnc_A 26 VGVILVLSSPS--GCGKTTVANKLLEKQKN--NIVKSV 59 (166)
T ss_dssp CCCEEEEECSC--C----CHHHHHHC------CEEECC
T ss_pred CCEEEEEECCC--CCCHHHHHHHHHHHCCC--CEEEEE
T ss_conf 98499998989--98999999999964987--678624
No 412
>>1e6c_A Shikimate kinase; phosphoryl transfer, ADP, shikimate pathway, P-loop protein, transferase; 1.8A {Erwinia chrysanthemi} (A:)
Probab=38.52 E-value=15 Score=16.95 Aligned_cols=18 Identities=28% Similarity=0.298 Sum_probs=14.9
Q ss_pred CCCCCCHHHHHHHHHHHH
Q ss_conf 788874899999999852
Q gi|254780401|r 55 GGTGKTPTALAIAKAVID 72 (338)
Q Consensus 55 GGtGKTP~v~~l~~~l~~ 72 (338)
-|+|||-++..|++.|..
T Consensus 11 ~GsGKsT~a~~La~~l~~ 28 (173)
T 1e6c_A 11 RGCGMTTVGRELARALGY 28 (173)
T ss_dssp TTSSHHHHHHHHHHHHTC
T ss_pred CCCCHHHHHHHHHHHHCC
T ss_conf 999889999999999699
No 413
>>1u7z_A Coenzyme A biosynthesis bifunctional protein coabc; ligase; HET: PMT; 2.30A {Escherichia coli} (A:)
Probab=38.28 E-value=26 Score=15.34 Aligned_cols=38 Identities=24% Similarity=0.238 Sum_probs=29.0
Q ss_pred CEEEECCEEECCCCCCHHHHHHHHHHHHCCCCEEEEEECCCCC
Q ss_conf 8899823000788874899999999852473159876045787
Q gi|254780401|r 45 PVICVGGFVMGGTGKTPTALAIAKAVIDKNLKPGFLSRGYGRK 87 (338)
Q Consensus 45 pVI~VGNitvGGtGKTP~v~~l~~~l~~~g~~~~ilsRGYg~~ 87 (338)
||=+|.|.+.|-+|. +||+.+..+|..|..+++--.-.
T Consensus 24 ~VR~ItN~SSGk~G~-----~lA~~~~~~Ga~V~li~g~~~~~ 61 (226)
T 1u7z_A 24 PVRYISDHSSGKMGF-----AIAAAAARRGANVTLVSGPVSLP 61 (226)
T ss_dssp SSEEEEECCCSHHHH-----HHHHHHHHTTCEEEEEECSCCCC
T ss_pred CCCEECCCCCCHHHH-----HHHHHHHHCCCEEEEEECCCCCC
T ss_conf 822426178219999-----99868987897199884145456
No 414
>>3fdi_A Uncharacterized protein; cytidylate kinase like protein, PSI, MCSG, PRK04182 class member, structural genomics; 2.20A {Eubacterium ventriosum atcc 27560} (A:)
Probab=38.11 E-value=13 Score=17.32 Aligned_cols=36 Identities=19% Similarity=0.145 Sum_probs=22.0
Q ss_pred CEEEECCEEECCCCCCHHHHHHHHHHHHCCCCEEEEEE
Q ss_conf 88998230007888748999999998524731598760
Q gi|254780401|r 45 PVICVGGFVMGGTGKTPTALAIAKAVIDKNLKPGFLSR 82 (338)
Q Consensus 45 pVI~VGNitvGGtGKTP~v~~l~~~l~~~g~~~~ilsR 82 (338)
++|+|.-. -|+|||-++..|++.|....+....+.|
T Consensus 7 ~~I~i~G~--~GsGKsTia~~La~~l~~~~~~~d~~~~ 42 (201)
T 3fdi_A 7 IIIAIGRE--FGSGGHLVAKKLAEHYNIPLYSKELLDE 42 (201)
T ss_dssp CEEEEEEC--TTSSHHHHHHHHHHHTTCCEECHHHHHH
T ss_pred EEEEECCC--CCCCHHHHHHHHHHHHCCCEECCHHHHH
T ss_conf 58996489--9888799999999993993886689999
No 415
>>2jg6_A DNA-3-methyladenine glycosidase; 3-methyladenine-DNA-glycosylase-I, hydrolase; 1.70A {Staphylococcus aureus} (A:122-186)
Probab=38.04 E-value=22 Score=15.79 Aligned_cols=19 Identities=21% Similarity=0.144 Sum_probs=16.5
Q ss_pred CCHHHHHHHHHHHHCCCCE
Q ss_conf 7489999999985247315
Q gi|254780401|r 59 KTPTALAIAKAVIDKNLKP 77 (338)
Q Consensus 59 KTP~v~~l~~~l~~~g~~~ 77 (338)
+||+...|++.|+++|++-
T Consensus 17 ~t~lS~~iskdLKkrGFkF 35 (65)
T 2jg6_A 17 VDDTATQLSKDLKQYGFKF 35 (65)
T ss_dssp CCHHHHHHHHHHHTTTCCS
T ss_pred CCHHHHHHHHHHHHCCCEE
T ss_conf 8889999999998577854
No 416
>>2zej_A Dardarin, leucine-rich repeat kinase 2; parkinson'S disease, LRRK2, ROC, GTPase, ROCO, ATP- binding, coiled coil, cytoplasm, disease mutation; HET: GDP; 2.00A {Homo sapiens} PDB: 3d6t_B* (A:1-72)
Probab=37.95 E-value=16 Score=16.79 Aligned_cols=21 Identities=29% Similarity=0.451 Sum_probs=15.9
Q ss_pred CCEEEECCEEECCCCCCHHHHHHH
Q ss_conf 988998230007888748999999
Q gi|254780401|r 44 IPVICVGGFVMGGTGKTPTALAIA 67 (338)
Q Consensus 44 ~pVI~VGNitvGGtGKTP~v~~l~ 67 (338)
+.|+.||+ +|.|||-++..+.
T Consensus 3 ~Ki~lvGd---~~vGKTsl~~~~~ 23 (72)
T 2zej_A 3 XKLXIVGN---TGSGKTTLLQQLX 23 (72)
T ss_dssp CEEEEESC---TTSSHHHHHHHHT
T ss_pred CEEEEECC---CCCCHHHHHHHHH
T ss_conf 18999995---9977999999997
No 417
>>3fb4_A Adenylate kinase; psychrophIle, phosphotransferase, ATP-binding, nucleotide-binding, transferase; HET: AP5; 2.00A {Marinibacillus marinus} (A:1-115,A:163-216)
Probab=37.90 E-value=16 Score=16.84 Aligned_cols=24 Identities=25% Similarity=0.285 Sum_probs=17.5
Q ss_pred CCCCCCHHHHHHHHHHHHCCCCEE
Q ss_conf 788874899999999852473159
Q gi|254780401|r 55 GGTGKTPTALAIAKAVIDKNLKPG 78 (338)
Q Consensus 55 GGtGKTP~v~~l~~~l~~~g~~~~ 78 (338)
-|+|||-++..|++.|.-..+.+.
T Consensus 9 pGsGKSTlak~La~~l~~~~i~~~ 32 (169)
T 3fb4_A 9 PGAGKGTQAEQIIEKYEIPHISTG 32 (169)
T ss_dssp TTSSHHHHHHHHHHHHCCCEEEHH
T ss_pred CCCCHHHHHHHHHHHHCCEEECHH
T ss_conf 999879999999999799678599
No 418
>>2rhm_A Putative kinase; ZP_00765535.1, structural genomics, joint center for structural genomics, JCSG, protein structure initiative; HET: MSE; 1.70A {Chloroflexus aurantiacus j-10-fl} (A:)
Probab=37.54 E-value=15 Score=17.02 Aligned_cols=27 Identities=26% Similarity=0.175 Sum_probs=19.0
Q ss_pred ECCCCCCHHHHHHHHHHHHCCCCEEEE
Q ss_conf 078887489999999985247315987
Q gi|254780401|r 54 MGGTGKTPTALAIAKAVIDKNLKPGFL 80 (338)
Q Consensus 54 vGGtGKTP~v~~l~~~l~~~g~~~~il 80 (338)
.-|+|||-++..|++.|...++....+
T Consensus 13 ~~GsGKsT~a~~L~~~l~~~~i~~~~~ 39 (193)
T 2rhm_A 13 HPATGKTTLSQALATGLRLPLLSKDAF 39 (193)
T ss_dssp STTSSHHHHHHHHHHHHTCCEEEHHHH
T ss_pred CCCCCHHHHHHHHHHHHCCCEEEHHHE
T ss_conf 899999999999999969948733230
No 419
>>2bme_A RAB4A, RAS-related protein RAB4A; GTP-binding protein, vesicular transport, endocytosis, prenylation, protein transport, transport; HET: GNP; 1.57A {Homo sapiens} (A:)
Probab=37.27 E-value=16 Score=16.76 Aligned_cols=34 Identities=15% Similarity=0.232 Sum_probs=19.9
Q ss_pred CCCCCEEEECCEEECCCCCCHHHHHHHHHHHHCCCCE
Q ss_conf 3889889982300078887489999999985247315
Q gi|254780401|r 41 HAPIPVICVGGFVMGGTGKTPTALAIAKAVIDKNLKP 77 (338)
Q Consensus 41 ~~~~pVI~VGNitvGGtGKTP~v~~l~~~l~~~g~~~ 77 (338)
...+.|+.||. +|.|||-++..+..---...+.+
T Consensus 8 ~~~~KiviiGd---~~VGKTsli~r~~~~~F~~~~~~ 41 (186)
T 2bme_A 8 DFLFKFLVIGN---AGTGKSCLLHQFIEKKFKDDSNH 41 (186)
T ss_dssp SEEEEEEEEES---TTSSHHHHHHHHHHSSCCTTCCC
T ss_pred CEEEEEEEECC---CCCCHHHHHHHHHHCCCCCCCCC
T ss_conf 86889999998---99188999999980988865554
No 420
>>3bbp_A RAB-6, RAS-related protein RAB-6A; golgi complex, GRIP domain, RAB GTPase, ARL GTPase, golgin, RAB effector, clAsp protein; HET: GTP; 3.00A {Homo sapiens} (A:)
Probab=37.04 E-value=18 Score=16.46 Aligned_cols=26 Identities=15% Similarity=0.169 Sum_probs=18.3
Q ss_pred CCCCCCEEEECCEEECCCCCCHHHHHHHH
Q ss_conf 33889889982300078887489999999
Q gi|254780401|r 40 LHAPIPVICVGGFVMGGTGKTPTALAIAK 68 (338)
Q Consensus 40 ~~~~~pVI~VGNitvGGtGKTP~v~~l~~ 68 (338)
....+.|+.||+ +|+|||-++..+..
T Consensus 13 ~~~~~KivlvG~---~~vGKTsli~r~~~ 38 (211)
T 3bbp_A 13 PLRKFKLVFLGE---QSVGKTSLITRFMY 38 (211)
T ss_dssp ----CEEEEEES---TTSSHHHHHHHHHT
T ss_pred CCCEEEEEEECC---CCCCHHHHHHHHHH
T ss_conf 876689999998---99799999999973
No 421
>>1zbd_A Rabphilin-3A; G protein, effector, RABCDR, synaptic exocytosis, RAB protein, RAB3A; HET: GTP; 2.60A {Rattus norvegicus} (A:)
Probab=37.01 E-value=13 Score=17.36 Aligned_cols=26 Identities=19% Similarity=0.376 Sum_probs=18.2
Q ss_pred CCCCCCEEEECCEEECCCCCCHHHHHHHH
Q ss_conf 33889889982300078887489999999
Q gi|254780401|r 40 LHAPIPVICVGGFVMGGTGKTPTALAIAK 68 (338)
Q Consensus 40 ~~~~~pVI~VGNitvGGtGKTP~v~~l~~ 68 (338)
+...+.|+.||+ +|.|||-++..++.
T Consensus 5 ~d~~~KvvivGd---~~VGKTsli~r~~~ 30 (203)
T 1zbd_A 5 FDYXFKILIIGN---SSVGKTSFLFRYAD 30 (203)
T ss_dssp CSEEEEEEEECS---TTSSHHHHHHHHHT
T ss_pred CCEEEEEEEECC---CCCCHHHHHHHHHC
T ss_conf 115359999999---99198999999970
No 422
>>1qfj_A Protein (flavin reductase); riboflavin, ferredoxin reductase superfamily, oxidoreductase; 2.20A {Escherichia coli} (A:97-232)
Probab=36.97 E-value=27 Score=15.20 Aligned_cols=36 Identities=19% Similarity=0.220 Sum_probs=23.7
Q ss_pred CCCCEEEECCEEECCCCCCHHHHHHHHHHHHCCCCEEEEE
Q ss_conf 8898899823000788874899999999852473159876
Q gi|254780401|r 42 APIPVICVGGFVMGGTGKTPTALAIAKAVIDKNLKPGFLS 81 (338)
Q Consensus 42 ~~~pVI~VGNitvGGtGKTP~v~~l~~~l~~~g~~~~ils 81 (338)
..-|+|.| +||||=||+..++-..++..-.....+-
T Consensus 5 ~~~~~ili----agG~GIaP~~s~l~~~~~~~~~~~v~l~ 40 (136)
T 1qfj_A 5 EERPMILI----AGGTGFSYARSILLTALARNPNRDITIY 40 (136)
T ss_dssp SSSCEEEE----EETTCHHHHHHHHHHHHHHCTTCCEEEE
T ss_pred CCCCEEEE----ECCCCCCHHHHHHHHHHHHCCCCCEEEE
T ss_conf 46758999----3697513199999999980999989999
No 423
>>1yt8_A Thiosulfate sulfurtransferase; rhodanase domains, cyanide detoxification, structural genomics, PSI, protein structure initiative; 1.90A {Pseudomonas aeruginosa} (A:241-367)
Probab=36.95 E-value=22 Score=15.85 Aligned_cols=36 Identities=19% Similarity=0.168 Sum_probs=24.3
Q ss_pred CCCC-CCCCHHH---HHHHHCCCCCCEEEECCCCCCCCCC
Q ss_conf 7634-6520122---5664102457479971832234412
Q gi|254780401|r 115 AVTI-VTSDRKI---GVQMLLQEGVDIIIMDDGFHSADLQ 150 (338)
Q Consensus 115 ~pv~-V~~~R~~---~~~~~~~~~~diiIlDDGfQh~~l~ 150 (338)
.+|+ .|..-.+ ++..+.+.+.++.+||+|++.+.-.
T Consensus 83 ~~iv~~c~~g~~s~~~a~~l~~~G~~v~~l~GG~~aW~~~ 122 (127)
T 1yt8_A 83 ARLVLVDDDGVRANXSASWLAQXGWQVAVLDGLSEADFSE 122 (127)
T ss_dssp CEEEEECSSSSHHHHHHHHHHHTTCEEEEECSCCGGGCCB
T ss_pred CEEEEEECCCCHHHHHHHHHHHCCCCCCCCCCCCCCHHHC
T ss_conf 7599994897168888999986266500014643210101
No 424
>>1wcw_A Uroporphyrinogen III synthase; congenital erythropoietic porphyria, structural genomics, riken structural genomics/proteomics initiative; 1.30A {Thermus thermophilus} PDB: 1wd7_A 1wcx_A (A:48-161)
Probab=36.95 E-value=15 Score=17.01 Aligned_cols=33 Identities=3% Similarity=-0.219 Sum_probs=28.4
Q ss_pred CCCCCCEEEEEECCCCHHHHHHHHHHHCCCCCC
Q ss_conf 111686389874155357899988740100001
Q gi|254780401|r 218 FDLSGKKVLAFSGIADTEKFFTTVRQLGALIEQ 250 (338)
Q Consensus 218 ~~l~~k~v~afsGIa~P~~F~~~L~~~g~~i~~ 250 (338)
....+++++.++|-..-+-+.+.|++.|+.+..
T Consensus 80 ~~~~~~~vl~~~g~~~~~~L~~~L~~~G~~v~~ 112 (114)
T 1wcw_A 80 LPQGRGVAALQLYGKPLPLLENALAERGYRVLP 112 (114)
T ss_dssp SCCCCEEEEEECCSSCCHHHHHHHHHTTEEEEE
T ss_pred HCCCCCEEEEEECCCCHHHHHHHHHHCCCCCEE
T ss_conf 435884899970798817999999977997669
No 425
>>2ew1_A RAS-related protein RAB-30; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.00A {Homo sapiens} (A:)
Probab=36.87 E-value=16 Score=16.83 Aligned_cols=25 Identities=20% Similarity=0.353 Sum_probs=16.8
Q ss_pred CCCCCEEEECCEEECCCCCCHHHHHHHH
Q ss_conf 3889889982300078887489999999
Q gi|254780401|r 41 HAPIPVICVGGFVMGGTGKTPTALAIAK 68 (338)
Q Consensus 41 ~~~~pVI~VGNitvGGtGKTP~v~~l~~ 68 (338)
...++||.||+ +|.|||-++...+.
T Consensus 24 ~~~~KiviiGd---~~VGKTsLi~r~~~ 48 (201)
T 2ew1_A 24 DFLFKIVLIGN---AGVGKTCLVRRFTQ 48 (201)
T ss_dssp SEEEEEEEEES---TTSSHHHHHHHHHH
T ss_pred CEEEEEEEECC---CCCCHHHHHHHHHC
T ss_conf 57989999998---98788999998836
No 426
>>2z43_A DNA repair and recombination protein RADA; archaea, filament, DNA binding, molecular switch, RECA, DMC1; HET: DNA; 1.93A {Sulfolobus solfataricus P2} PDB: 2bke_A* 2dfl_A* 2zub_A* 2zuc_A* 2zud_A* (A:89-324)
Probab=36.79 E-value=9.6 Score=18.38 Aligned_cols=27 Identities=26% Similarity=0.196 Sum_probs=22.4
Q ss_pred CCCCCCHHHHHHHHHHHHCCCCEEEEE
Q ss_conf 788874899999999852473159876
Q gi|254780401|r 55 GGTGKTPTALAIAKAVIDKNLKPGFLS 81 (338)
Q Consensus 55 GGtGKTP~v~~l~~~l~~~g~~~~ils 81 (338)
-|+|||-++..++......+.+++.++
T Consensus 28 pG~GKT~l~~~~~~~~~~~~~~~~~~~ 54 (236)
T 2z43_A 28 FGSGKTQLCHQLSVNVQLPPEKGGLSG 54 (236)
T ss_dssp TTSSHHHHHHHHHHHTTSCGGGTCCSC
T ss_pred CCCHHHHHHHHHHHHHHHHHHHCCCCC
T ss_conf 887199999999999998776447786
No 427
>>1oix_A RAS-related protein RAB-11A; small G protein, intracellular trafficking, GTP-binding, lipoprotein, prenylation, protein transport; HET: GDP; 1.7A {Homo sapiens} (A:)
Probab=36.78 E-value=17 Score=16.68 Aligned_cols=25 Identities=20% Similarity=0.369 Sum_probs=16.8
Q ss_pred CCCCCEEEECCEEECCCCCCHHHHHHHH
Q ss_conf 3889889982300078887489999999
Q gi|254780401|r 41 HAPIPVICVGGFVMGGTGKTPTALAIAK 68 (338)
Q Consensus 41 ~~~~pVI~VGNitvGGtGKTP~v~~l~~ 68 (338)
...+.|+.||+ +|.|||-++..+++
T Consensus 27 ~~~~KiviiGd---~~VGKTSLi~r~~~ 51 (191)
T 1oix_A 27 DYLFKVVLIGD---SGVGKSNLLSRFTR 51 (191)
T ss_dssp SEEEEEEEEEC---TTSSHHHHHHHHHH
T ss_pred CEEEEEEEECC---CCCCHHHHHHHHHH
T ss_conf 68979999998---99298999999973
No 428
>>1xq6_A Unknown protein; structural genomics, protein structure initiative, CESG, AT5G02240, NADP, center for eukaryotic structural genomics; HET: NAP; 1.80A {Arabidopsis thaliana} (A:)
Probab=36.75 E-value=27 Score=15.18 Aligned_cols=30 Identities=20% Similarity=0.133 Sum_probs=24.4
Q ss_pred EEECCCCCCHHHHHHHHHHHHCCCCEEEEEEC
Q ss_conf 00078887489999999985247315987604
Q gi|254780401|r 52 FVMGGTGKTPTALAIAKAVIDKNLKPGFLSRG 83 (338)
Q Consensus 52 itvGGtGKTP~v~~l~~~l~~~g~~~~ilsRG 83 (338)
+.+||||- +=.+|++.|.++|+++.++.|.
T Consensus 8 lItGatG~--iG~~l~~~Ll~~g~~v~~~~~~ 37 (253)
T 1xq6_A 8 LVTGASGR--TGQIVYKKLKEGSDKFVAKGLV 37 (253)
T ss_dssp EEESTTSH--HHHHHHHHHHHTTTTCEEEEEE
T ss_pred EEECCCCH--HHHHHHHHHHHCCCCEEEEEEE
T ss_conf 99898658--9999999999769947999970
No 429
>>2bi7_A UDP-galactopyranose mutase; FAD, flavoprotein, isomerase, lipopolysaccharide biosynthesis; HET: FAD; 2.0A {Klebsiella pneumoniae} (A:1-38,A:209-240,A:336-384)
Probab=36.70 E-value=27 Score=15.17 Aligned_cols=23 Identities=9% Similarity=0.185 Sum_probs=19.9
Q ss_pred HHHHHHHHHHHHCCCCEEEEEEC
Q ss_conf 89999999985247315987604
Q gi|254780401|r 61 PTALAIAKAVIDKNLKPGFLSRG 83 (338)
Q Consensus 61 P~v~~l~~~l~~~g~~~~ilsRG 83 (338)
|.-..+|..|.++|++|.|+-|+
T Consensus 13 ~aG~~~A~~La~~G~kVlVIEkr 35 (119)
T 2bi7_A 13 FSGAVIGRQLAEKGHQVHIIDQR 35 (119)
T ss_dssp HHHHHHHHHHHTTTCEEEEEESS
T ss_pred HHHHHHHHHHHHCCCCEEEEECC
T ss_conf 99999999998689968999779
No 430
>>1qsg_A Enoyl-[acyl-carrier-protein] reductase; enoyl reductase, oxidoreductase; HET: GLC NAD TCL; 1.75A {Escherichia coli} (A:)
Probab=36.67 E-value=27 Score=15.17 Aligned_cols=32 Identities=25% Similarity=0.299 Sum_probs=26.9
Q ss_pred EEECCCCCCHHHHHHHHHHHHCCCCEEEEEEC
Q ss_conf 00078887489999999985247315987604
Q gi|254780401|r 52 FVMGGTGKTPTALAIAKAVIDKNLKPGFLSRG 83 (338)
Q Consensus 52 itvGGtGKTP~v~~l~~~l~~~g~~~~ilsRG 83 (338)
+.+||++..-+=..+|+.|.+.|.++.+..|-
T Consensus 13 lITGas~~~GIG~aiA~~la~~G~~Vv~~~r~ 44 (265)
T 1qsg_A 13 LVTGVASKLSIAYGIAQAMHREGAELAFTYQN 44 (265)
T ss_dssp EECCCCSTTSHHHHHHHHHHHTTCEEEEEESS
T ss_pred EEECCCCCHHHHHHHHHHHHHCCCEEEEEECC
T ss_conf 99899985018999999999869999999588
No 431
>>2wmy_A WZB, putative acid phosphatase WZB; hydrolase; 2.21A {Escherichia coli} (A:)
Probab=36.64 E-value=16 Score=16.78 Aligned_cols=88 Identities=16% Similarity=0.268 Sum_probs=44.1
Q ss_pred CCCCEEEECCEEECCCCCCHHHHHHHHHHHHCCCCEEEEEECCCCCCCCCEEEECCCCCHHHHCCHHHHHHHCCCCCCCC
Q ss_conf 88988998230007888748999999998524731598760457877775587145678877042123322057634652
Q gi|254780401|r 42 APIPVICVGGFVMGGTGKTPTALAIAKAVIDKNLKPGFLSRGYGRKSRISFRVDLEKHSAYDVGDEPLLLARRAVTIVTS 121 (338)
Q Consensus 42 ~~~pVI~VGNitvGGtGKTP~v~~l~~~l~~~g~~~~ilsRGYg~~~~~~~~v~~~~~~~~~vGDEp~lla~~~pv~V~~ 121 (338)
..|-.||-||+ ..+|++..+.+.+.. ..++.|+|=|....+++ -..+....+..-+-.+.
T Consensus 9 ~~VLFVC~~N~-----~RS~mAEal~~~~~~---~~~~~sag~~~~~~~~v------------~~~a~~~l~~~gid~~~ 68 (150)
T 2wmy_A 9 DSILVICTGNI-----CRSPIGERLLRRLLP---SKKINSAGVGALVDHTA------------DESAIRVAEKNGLCLKG 68 (150)
T ss_dssp CEEEEEESSSS-----SHHHHHHHHHHHHCT---TSEEEEEETTCCTTCCC------------CHHHHHHHHHTTCCCTT
T ss_pred CCEEEEECCCH-----HHHHHHHHHHHHHCC---CCCCEEEEEECCCCCCC------------CHHHHHHHHHCCCCCCC
T ss_conf 80899908957-----799999999997353---36866889853679989------------80789989980988220
Q ss_pred CHHHHHHHHCCCCCCEEEECCCCCCCCC
Q ss_conf 0122566410245747997183223441
Q gi|254780401|r 122 DRKIGVQMLLQEGVDIIIMDDGFHSADL 149 (338)
Q Consensus 122 ~R~~~~~~~~~~~~diiIlDDGfQh~~l 149 (338)
.+.+......-..+|+||.-|--|+..+
T Consensus 69 ~~~~~l~~~~~~~~D~Ii~m~~~~~~~l 96 (150)
T 2wmy_A 69 HRGTKFTSALARQYDLLLVMEYSHLEQI 96 (150)
T ss_dssp CCCCBCCHHHHTTCSEEEESCHHHHHHH
T ss_pred CCCCCCCCCCCCCCCEEEECCHHHHHHH
T ss_conf 1023443002456889998798899999
No 432
>>1e4v_A Adenylate kinase; transferase(phosphotransferase); HET: AP5; 1.85A {Escherichia coli} (A:)
Probab=36.57 E-value=17 Score=16.60 Aligned_cols=18 Identities=22% Similarity=-0.040 Sum_probs=14.6
Q ss_pred CCCCCCHHHHHHHHHHHH
Q ss_conf 788874899999999852
Q gi|254780401|r 55 GGTGKTPTALAIAKAVID 72 (338)
Q Consensus 55 GGtGKTP~v~~l~~~l~~ 72 (338)
=|+|||-++..||+.|.-
T Consensus 9 pGsGKtT~a~~La~~~~~ 26 (214)
T 1e4v_A 9 PVAGKGTQAQFIMEKYGI 26 (214)
T ss_dssp TTSSHHHHHHHHHHHHCC
T ss_pred CCCCHHHHHHHHHHHHCC
T ss_conf 999879999999998798
No 433
>>2gjx_A Beta-hexosaminidase alpha chain; beta-hexosaminidase A, glycosidase, TAY-sachs disease, GM2 ganglisode, TIM barrel, hydrolase; HET: NAG BMA NDG; 2.80A {Homo sapiens} (A:145-467)
Probab=36.43 E-value=27 Score=15.14 Aligned_cols=30 Identities=17% Similarity=0.273 Sum_probs=15.6
Q ss_pred HCCCCCCEEEECCCC-CCCCCCCEEEEEEEC
Q ss_conf 102457479971832-234412306999961
Q gi|254780401|r 130 LLQEGVDIIIMDDGF-HSADLQADFSLIVVN 159 (338)
Q Consensus 130 ~~~~~~diiIlDDGf-Qh~~l~rdl~Ivl~d 159 (338)
+.+.+..+++.+|++ .+..+.+|.-+..=+
T Consensus 197 v~~~G~~~~~W~D~l~~~~~l~~~~ii~~W~ 227 (323)
T 2gjx_A 197 VSSYGKGYVVWQEVFDNKVKIQPDTIIQVWR 227 (323)
T ss_dssp HHTTTCEEEEEHHHHHTTCCCCTTCEEEECC
T ss_pred HHHCCCCEEEECCCCCCCCCCCCCCEEEEEC
T ss_conf 9975984685023446777789986377633
No 434
>>2fts_A Gephyrin; gephyrin, neuroreceptor anchoring, structural protein; 2.41A {Rattus norvegicus} (A:1-21,A:182-334)
Probab=36.35 E-value=27 Score=15.13 Aligned_cols=73 Identities=16% Similarity=0.194 Sum_probs=33.3
Q ss_pred HHCCHHHHHHHHHHHHCCCCH----HH----HHHHCCCCHHHH--HHHHCCCCCC-----CCCEEEEEECCCCHHHHHHH
Q ss_conf 210025566514544204412----45----776313501112--2220132111-----68638987415535789998
Q gi|254780401|r 176 RVPLSRQLSYVDAILYVGNKK----NV----ISSIKNKSVYFA--KLKPRLTFDL-----SGKKVLAFSGIADTEKFFTT 240 (338)
Q Consensus 176 REp~~~~l~rad~vi~~~~~~----~~----~~~~~~~~i~~~--~~~~~~~~~l-----~~k~v~afsGIa~P~~F~~~ 240 (338)
++-+..+++++|+||++|.-. +. .......++.+. ..+|....-. ......+|+==|+|.....+
T Consensus 78 ~~~l~~~~~~~DiVIttGG~g~g~~D~t~~a~~~~~~~~i~~~~~~~~Pg~~~~~~~~~~~~~~~~vi~LPG~P~aa~~~ 157 (174)
T 2fts_A 78 LNALNEGISRADVIITSGGVSMGEKDYLKQVLDIDLHAQIHFGRVFMKPGLPTTFATLDIDGVRKIIFALPGNPVSAVVT 157 (174)
T ss_dssp HHHHHHHHHHCSEEEEESCCSSSCCHHHHHHHHTTTCCEEEESEEECBSCTTCEEEEEEETTEEEEEEEECSSHHHHHHH
T ss_pred HHHHHHHHHHCCEEEEECCCCHHHHHHHHHHHHHHCCCEEEEEEEECCCCCCCEEEEECCCCCCCEEEECCCCCHHHHHH
T ss_conf 99998645434579850554614678899998751562799967520378654567712589984699756674445554
Q ss_pred HHHHCCCC
Q ss_conf 87401000
Q gi|254780401|r 241 VRQLGALI 248 (338)
Q Consensus 241 L~~~g~~i 248 (338)
+..+-..+
T Consensus 158 ~~~~v~p~ 165 (174)
T 2fts_A 158 CNLFVVPA 165 (174)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
T ss_conf 78763078
No 435
>>3g7q_A Valine-pyruvate aminotransferase; NP_462565.1, structural genomics, joint center for structural genomics, JCSG; HET: MSE; 1.80A {Salmonella typhimurium} (A:42-95,A:282-297)
Probab=36.28 E-value=16 Score=16.73 Aligned_cols=24 Identities=33% Similarity=0.465 Sum_probs=20.0
Q ss_pred CCCCCCHHHHHHHHHHHHC-CCCEE
Q ss_conf 7888748999999998524-73159
Q gi|254780401|r 55 GGTGKTPTALAIAKAVIDK-NLKPG 78 (338)
Q Consensus 55 GGtGKTP~v~~l~~~l~~~-g~~~~ 78 (338)
|=.||.+|...||+.|.+. ||.|+
T Consensus 32 gPQGk~~fi~ALA~lLn~~YGWn~~ 56 (70)
T 3g7q_A 32 GPQGKTALLNALAVLLRETLGWDPG 56 (70)
T ss_dssp CTTSHHHHHHHHHHHHHHHHCCCCC
T ss_pred CCCCCHHHHHHHHHHHHHHHCCCCC
T ss_conf 9877599999999868998689944
No 436
>>3hdg_A Uncharacterized protein; two-component sensor activity, response regulator, PSI-II, 11227F, NYSGXRC, structural genomics; 2.27A {Wolinella succinogenes} (A:)
Probab=36.19 E-value=28 Score=15.12 Aligned_cols=26 Identities=23% Similarity=0.290 Sum_probs=15.6
Q ss_pred CCCCCCCHHHHHHHHCCCCCCEEEEC
Q ss_conf 63465201225664102457479971
Q gi|254780401|r 116 VTIVTSDRKIGVQMLLQEGVDIIIMD 141 (338)
Q Consensus 116 pv~V~~~R~~~~~~~~~~~~diiIlD 141 (338)
-|.++.+-.+|...+.+..+|+||+|
T Consensus 33 ~v~~a~~~~~al~~~~~~~~dliilD 58 (137)
T 3hdg_A 33 EVWSAGDGEEGERLFGLHAPDVIITD 58 (137)
T ss_dssp CEEEESSHHHHHHHHHHHCCSEEEEC
T ss_pred EEEEECCHHHHHHHHHHCCCCEEEEE
T ss_conf 99998999999999984788889982
No 437
>>2r44_A Uncharacterized protein; YP_676785.1, putative ATPase, structural genomics, joint center for structural genomics, JCSG; HET: MSE PG4; 2.00A {Cytophaga hutchinsonii atcc 33406} (A:1-226)
Probab=36.13 E-value=8.8 Score=18.65 Aligned_cols=30 Identities=20% Similarity=0.074 Sum_probs=23.7
Q ss_pred CCCCCCEEEECCEEECCCCCCHHHHHHHHHHHH
Q ss_conf 338898899823000788874899999999852
Q gi|254780401|r 40 LHAPIPVICVGGFVMGGTGKTPTALAIAKAVID 72 (338)
Q Consensus 40 ~~~~~pVI~VGNitvGGtGKTP~v~~l~~~l~~ 72 (338)
...+-+|+-+|.= |||||-++..+++.+..
T Consensus 43 ~~~~~~vLL~Gpp---GtGKT~la~~la~~~~~ 72 (226)
T 2r44_A 43 ICTGGHILLEGVP---GLAKTLSVNTLAKTXDL 72 (226)
T ss_dssp HHHTCCEEEESCC---CHHHHHHHHHHHHHTTC
T ss_pred HHCCCCEEEECCC---CCHHHHHHHHHHHHHCC
T ss_conf 9769958998999---87099999999986401
No 438
>>1k66_A Phytochrome response regulator RCPB; CHEY homologue, homodimer, APO-protein, (beta/alpha)5, signaling protein; 1.75A {Tolypothrix SP} (A:)
Probab=35.99 E-value=26 Score=15.24 Aligned_cols=25 Identities=16% Similarity=0.238 Sum_probs=12.1
Q ss_pred CCCCCCHHHHHHHHCCC----------CCCEEEEC
Q ss_conf 34652012256641024----------57479971
Q gi|254780401|r 117 TIVTSDRKIGVQMLLQE----------GVDIIIMD 141 (338)
Q Consensus 117 v~V~~~R~~~~~~~~~~----------~~diiIlD 141 (338)
|..+.+=.+|..++.+. .+|+||+|
T Consensus 35 v~~a~~g~eAl~~l~~~~~~~~~~~~~~pdlillD 69 (149)
T 1k66_A 35 IYRCITGDQALDFLYQTGSYCNPDIAPRPAVILLD 69 (149)
T ss_dssp EEEECSHHHHHHHHHTCCSSSCGGGCCCCSEEEEC
T ss_pred EEEECCHHHHHHHHHHHCCCCCCCCCCCCCEEEEC
T ss_conf 99989999999999851311111125799989981
No 439
>>1zuh_A Shikimate kinase; alpha-beta protein, transferase; 1.80A {Helicobacter pylori 26695} PDB: 1zui_A* (A:)
Probab=35.84 E-value=18 Score=16.46 Aligned_cols=18 Identities=28% Similarity=0.385 Sum_probs=14.3
Q ss_pred ECCCCCCHHHHHHHHHHH
Q ss_conf 078887489999999985
Q gi|254780401|r 54 MGGTGKTPTALAIAKAVI 71 (338)
Q Consensus 54 vGGtGKTP~v~~l~~~l~ 71 (338)
.-|+|||-++..|++.|.
T Consensus 15 ~~GsGKtT~a~~La~~l~ 32 (168)
T 1zuh_A 15 FMGSGKSSLAQELGLALK 32 (168)
T ss_dssp CTTSSHHHHHHHHHHHHT
T ss_pred CCCCCHHHHHHHHHHHHC
T ss_conf 999989999999999969
No 440
>>1w7j_A Myosin VA; motor protein, unconventional myosin, myosin V, chicken, molecular motor, ATPase, ELC, IQ motif, muscle protein, ATP-binding; HET: ADP; 2A {Gallus gallus} (A:73-317,A:427-443,A:654-697)
Probab=35.81 E-value=22 Score=15.77 Aligned_cols=51 Identities=16% Similarity=0.062 Sum_probs=24.0
Q ss_pred EEEECCCCHHHHHHHHHHHCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCEEEECHHHHHHCCC
Q ss_conf 987415535789998874010000122143323489899999999756479879985466343823
Q gi|254780401|r 226 LAFSGIADTEKFFTTVRQLGALIEQCYSFGDHAHLSDKKIAYLLDQAQQKGLILVTTAKDAMRLHK 291 (338)
Q Consensus 226 ~afsGIa~P~~F~~~L~~~g~~i~~~~~fpDHh~ys~~dl~~i~~~a~~~~~~iiTTEKD~VKL~~ 291 (338)
..+.|+-+-+.|.+++..+.. +-|.+.++-+..+| =..+=.|+--+|||-+
T Consensus 222 ~~~~~~dD~~~f~~~~~al~~-----lGf~~~~~~~l~~L----------~~~l~~t~~hfIRCIk 272 (306)
T 1w7j_A 222 PVIDGIDDAKEMVNTRQACTL-----LGIVKQHSFIGVLD----------IYGFETTTPHYVRCIK 272 (306)
T ss_dssp CCCTTCCHHHHHHHHHHHHHH-----TTCSCCSEEEEEEE----------CCCCCCSEEEEEEEEC
T ss_pred CCCCCCCHHHHHHHHHHHHHH-----CCCCCCCCEEEEEE----------ECCCCCCCCEEEEEEC
T ss_conf 203785639999999999986-----49956551588885----------0486557987999979
No 441
>>1r6b_X CLPA protein; AAA+, N-terminal domain, CLPS, crystal, binding mechanism, hydrolase; HET: ADP; 2.25A {Escherichia coli} (X:440-652)
Probab=35.72 E-value=28 Score=15.07 Aligned_cols=25 Identities=28% Similarity=0.413 Sum_probs=18.2
Q ss_pred EEEECCEEECCCCCCHHHHHHHHHHHHC
Q ss_conf 8998230007888748999999998524
Q gi|254780401|r 46 VICVGGFVMGGTGKTPTALAIAKAVIDK 73 (338)
Q Consensus 46 VI~VGNitvGGtGKTP~v~~l~~~l~~~ 73 (338)
+.-+|- =|||||=++.+||+.+...
T Consensus 52 ~ll~Gp---pG~GKT~lAk~lA~~~~~~ 76 (213)
T 1r6b_X 52 FLFAGP---TGVGKTEVTVQLSKALGIE 76 (213)
T ss_dssp EEEECS---TTSSHHHHHHHHHHHHTCE
T ss_pred EEEECC---CCCCHHHHHHHHHHHHCCC
T ss_conf 898778---8756899999999980688
No 442
>>3ffh_A Histidinol-phosphate aminotransferase; APC88260, listeria innocua CLIP11262, structural genomics, PSI-2, protein structure initiative; 2.31A {Listeria innocua} (A:84-253)
Probab=35.48 E-value=28 Score=15.04 Aligned_cols=121 Identities=10% Similarity=0.047 Sum_probs=64.0
Q ss_pred CCCCCHHHHHHHHHHHHCCCCEEEEEECCCCCC-----CCC--EEEECCCCCHHHHCCHHHHHH-H-----------CCC
Q ss_conf 888748999999998524731598760457877-----775--587145678877042123322-0-----------576
Q gi|254780401|r 56 GTGKTPTALAIAKAVIDKNLKPGFLSRGYGRKS-----RIS--FRVDLEKHSAYDVGDEPLLLA-R-----------RAV 116 (338)
Q Consensus 56 GtGKTP~v~~l~~~l~~~g~~~~ilsRGYg~~~-----~~~--~~v~~~~~~~~~vGDEp~lla-~-----------~~p 116 (338)
++|=|.....+...|.+.|-.+.+-+=+|..-. .|. ..+....... .-++....+ + +.|
T Consensus 7 t~G~~~al~~~~~~l~~~gd~Vl~~~p~y~~~~~~~~~~g~~~~~v~~~~~~~--~~~~~~~~~~~~~~~~~~~~~p~NP 84 (170)
T 3ffh_A 7 TAGVDELIELLTRVLLDTTTNTVXATPTFVQYRQNALIEGAEVREIPLLQDGE--HDLEGXLNAIDEKTTIVWICNPNNP 84 (170)
T ss_dssp ESSHHHHHHHHHHHHCSTTCEEEEEESSCHHHHHHHHHHTCEEEEEECCTTSC--CCHHHHHHHCCTTEEEEEEESSCTT
T ss_pred ECCHHHHHHHHHHHHHCCCCEEEECCCCCHHHHHHHHHCCCCCEEEECCCCCC--CCHHHHHHHCCCCCCEEEECCCCCC
T ss_conf 28788999999999708999899836860477899986597201320134542--0589999756779838997799899
Q ss_pred C--CCCCCHHHHHHHHCCCCCCEEEECCCCCCCCC-----------CCEEEEEEECCCCCCC-C----CCCCCCHHHHHC
Q ss_conf 3--46520122566410245747997183223441-----------2306999961843356-6----553761365210
Q gi|254780401|r 117 T--IVTSDRKIGVQMLLQEGVDIIIMDDGFHSADL-----------QADFSLIVVNSHRGLG-N----GLVFPAGPLRVP 178 (338)
Q Consensus 117 v--~V~~~R~~~~~~~~~~~~diiIlDDGfQh~~l-----------~rdl~Ivl~d~~~~~g-n----~~llPaGpLREp 178 (338)
+ +.+.++.+.+..+.+ .-+++|.||.+++... ..+-.|++....+.|| . |+++--..++|-
T Consensus 85 tG~~~~~~~~~~l~~~~~-~~~~~i~Dda~~~~~~~~~~~~~~~~~~~~~~i~~~s~sK~~~~~G~R~g~i~~~~~~~~~ 163 (170)
T 3ffh_A 85 TGNYIELADIQAFLDRVP-SDVLVVLDEAYIEYVTPQPEKHEKLVRTYKNLIITRTFSKIYGLASARVGYGIADKEIIRQ 163 (170)
T ss_dssp TCCCCCHHHHHHHHTTSC-TTSEEEEECTTGGGCSSCCCCCGGGGGTCTTEEEEEESSSTTCCSSCCCEEEEECHHHHHH
T ss_pred CCCCCCHHHHHHHHHHCC-CCCEEEEECHHHHHHCCCCCCCHHHHHCCCCEEEECCCCCCCCCCCCCCCCCCCCHHHHHH
T ss_conf 871044899999999733-4838999640267642577642123303674576225653214665444234599999999
Q ss_pred C
Q ss_conf 0
Q gi|254780401|r 179 L 179 (338)
Q Consensus 179 ~ 179 (338)
+
T Consensus 164 l 164 (170)
T 3ffh_A 164 L 164 (170)
T ss_dssp H
T ss_pred H
T ss_conf 9
No 443
>>2hrz_A AGR_C_4963P, nucleoside-diphosphate-sugar epimerase; structural genomics, PSI-2, protein structure initiative; 1.85A {Agrobacterium tumefaciens str} (A:)
Probab=35.47 E-value=27 Score=15.22 Aligned_cols=31 Identities=10% Similarity=0.267 Sum_probs=24.8
Q ss_pred EEECCCCCCHHHHHHHHHHHHCCCCEEEEEECC
Q ss_conf 000788874899999999852473159876045
Q gi|254780401|r 52 FVMGGTGKTPTALAIAKAVIDKNLKPGFLSRGY 84 (338)
Q Consensus 52 itvGGtGKTP~v~~l~~~l~~~g~~~~ilsRGY 84 (338)
+++|||| =+=.+|++.|.++|+++.++.|.-
T Consensus 18 LVTGatG--fiG~~lv~~Ll~~g~~V~~~~~~~ 48 (342)
T 2hrz_A 18 AIIGAAG--XVGRKLTQRLVKDGSLGGKPVEKF 48 (342)
T ss_dssp EEETTTS--HHHHHHHHHHHHHCEETTEEEEEE
T ss_pred EEECCCC--HHHHHHHHHHHHCCCCCCCCCEEE
T ss_conf 9989986--999999999997799666663079
No 444
>>1r2q_A RAS-related protein RAB-5A; GTPase, GNP, atomic resolution, protein transport; HET: GNP; 1.05A {Homo sapiens} (A:)
Probab=35.38 E-value=16 Score=16.75 Aligned_cols=23 Identities=22% Similarity=0.440 Sum_probs=16.5
Q ss_pred CCCEEEECCEEECCCCCCHHHHHHHH
Q ss_conf 89889982300078887489999999
Q gi|254780401|r 43 PIPVICVGGFVMGGTGKTPTALAIAK 68 (338)
Q Consensus 43 ~~pVI~VGNitvGGtGKTP~v~~l~~ 68 (338)
.+.|+.||+ +|.|||-++..++.
T Consensus 6 ~~Ki~ivG~---~~vGKTSLi~r~~~ 28 (170)
T 1r2q_A 6 QFKLVLLGE---SAVGKSSLVLRFVK 28 (170)
T ss_dssp EEEEEEECS---TTSSHHHHHHHHHH
T ss_pred EEEEEEECC---CCCCHHHHHHHHHH
T ss_conf 889999999---99898999999985
No 445
>>3kqn_A Serine protease/ntpase/helicase NS3; helicase-substrate transition-state complex, HCV, NS3 protein, helicase, DNA-binding; HET: ADP; 2.05A {Hepatitis c virus} PDB: 3kql_A* 3kqu_A* 3kqh_A 3kqk_A 2zjo_A* 8ohm_A 1a1v_A* 2f55_A 1hei_A 1jr6_A 1onb_A (A:1-141,A:295-395)
Probab=35.29 E-value=28 Score=15.02 Aligned_cols=35 Identities=6% Similarity=-0.047 Sum_probs=22.2
Q ss_pred CCCCEEEEEEECCCCCCCCCCCCCCHHHHHCCHHH
Q ss_conf 41230699996184335665537613652100255
Q gi|254780401|r 148 DLQADFSLIVVNSHRGLGNGLVFPAGPLRVPLSRQ 182 (338)
Q Consensus 148 ~l~rdl~Ivl~d~~~~~gn~~llPaGpLREp~~~~ 182 (338)
...++.-++++.|.-+---.-+++.|+|-|-...+
T Consensus 123 ~~~~~~~vL~lSATpp~~v~~~~~~~~~~~~~~~~ 157 (242)
T 3kqn_A 123 ETAGARLVVLATATPPGSVSGMFDSSVLCECYDAG 157 (242)
T ss_dssp TTTTCSEEEEEESSCTTCCCSBCCHHHHHHHHHHH
T ss_pred CCCCCEEEEEEECCCCCCCCCCCHHHHHHHHHHHH
T ss_conf 46876169996236664434456389999999964
No 446
>>1dbw_A Transcriptional regulatory protein FIXJ; doubly wound five-stranded beta/alpha fold, nitrogen fixation regulation; HET: 15P; 1.60A {Rhizobium meliloti} (A:)
Probab=35.27 E-value=28 Score=15.02 Aligned_cols=26 Identities=4% Similarity=0.045 Sum_probs=13.1
Q ss_pred CCCCCCCHHHHHHHHCCCCCCEEEEC
Q ss_conf 63465201225664102457479971
Q gi|254780401|r 116 VTIVTSDRKIGVQMLLQEGVDIIIMD 141 (338)
Q Consensus 116 pv~V~~~R~~~~~~~~~~~~diiIlD 141 (338)
.|.+..+-.++...+.+..+|+||+|
T Consensus 29 ~v~~~~~~~~al~~l~~~~~d~vilD 54 (126)
T 1dbw_A 29 AVKMHQSAEAFLAFAPDVRNGVLVTD 54 (126)
T ss_dssp EEEEESCHHHHHHHGGGCCSEEEEEE
T ss_pred EEEEECCHHHHHHHHHCCCCCEEEEE
T ss_conf 99997687999999760688799987
No 447
>>1krh_A Benzoate 1,2-dioxygenase reductase; alpha-beta, FAD-binding, ferredoxin, NADH-binding, oxidoreductase; HET: FAD; 1.50A {Acinetobacter SP} (A:206-338)
Probab=35.09 E-value=29 Score=15.00 Aligned_cols=31 Identities=26% Similarity=0.268 Sum_probs=21.6
Q ss_pred EECCCCCCHHHHHHHHHHHHCCCCEEEEEEC
Q ss_conf 0078887489999999985247315987604
Q gi|254780401|r 53 VMGGTGKTPTALAIAKAVIDKNLKPGFLSRG 83 (338)
Q Consensus 53 tvGGtGKTP~v~~l~~~l~~~g~~~~ilsRG 83 (338)
.+||||=||+...+-..+.........+-=|
T Consensus 11 ia~G~GiaP~~s~l~~~~~~~~~~~i~l~~~ 41 (133)
T 1krh_A 11 LAGGTGIAPFLSMLQVLEQKGSEHPVRLVFG 41 (133)
T ss_dssp EEEGGGHHHHHHHHHHHHHHCCSSCEEEEEE
T ss_pred EECCCCCCHHHHHHHHHHHHCCCCCEEEEEE
T ss_conf 9798875559999999986144562379871
No 448
>>1uz5_A MOEA protein, 402AA long hypothetical molybdopterin biosynthesis MOEA protein; MOEA molybdopterin, MOCF biosynthesis; 2.05A {Pyrococcus horikoshii} (A:1-21,A:180-326)
Probab=35.07 E-value=29 Score=15.00 Aligned_cols=68 Identities=16% Similarity=0.242 Sum_probs=31.6
Q ss_pred HHHCCHHHHHHHHHHHHCCCCH----HH----HHHHCCCCHHHHHHHHCC---CCCCCCCEEEEEECCCCHHHHHHHHHH
Q ss_conf 5210025566514544204412----45----776313501112222013---211168638987415535789998874
Q gi|254780401|r 175 LRVPLSRQLSYVDAILYVGNKK----NV----ISSIKNKSVYFAKLKPRL---TFDLSGKKVLAFSGIADTEKFFTTVRQ 243 (338)
Q Consensus 175 LREp~~~~l~rad~vi~~~~~~----~~----~~~~~~~~i~~~~~~~~~---~~~l~~k~v~afsGIa~P~~F~~~L~~ 243 (338)
+++-+.+++.++|+||++|.-. +. ..........-....|.. .....++.++.. =|+|.....++..
T Consensus 78 I~~~l~~~~~~~DlVIttGG~g~g~~D~t~~al~~~~~~~~~gi~~~PG~~~~~g~~~~~~v~~L--PG~P~aa~~~~~~ 155 (168)
T 1uz5_A 78 LKALIEKAVNVGDVVVISGGASGGTKDLTASVIEELGEVKVHGIAIQPGKPTIIGVIKGKPVFGL--PGYPTSCLTNFTL 155 (168)
T ss_dssp HHHHHHHHHHHCSEEEEECCC-----CHHHHHHHHHSEEEEECBSEESCTTCEEEEETTEEEEEE--CSSHHHHHHHHHH
T ss_pred HHHHHHCCCCCCCEEEEECCCCCCHHHHHHHHHHHCCCEEEEEEEEEECCCEEEEECCCCEEEEC--CCCCHHHHHHHHH
T ss_conf 66654203323424797257343123779999986496699888788313237852136538953--6564005465788
Q ss_pred H
Q ss_conf 0
Q gi|254780401|r 244 L 244 (338)
Q Consensus 244 ~ 244 (338)
+
T Consensus 156 ~ 156 (168)
T 1uz5_A 156 L 156 (168)
T ss_dssp H
T ss_pred H
T ss_conf 7
No 449
>>1gwn_A RHO-related GTP-binding protein RHOE; GTPase, inactive GTPase, signal transduction; HET: GTP; 2.1A {Mus musculus} (A:)
Probab=34.91 E-value=19 Score=16.26 Aligned_cols=25 Identities=28% Similarity=0.389 Sum_probs=16.9
Q ss_pred CCCCCEEEECCEEECCCCCCHHHHHHHH
Q ss_conf 3889889982300078887489999999
Q gi|254780401|r 41 HAPIPVICVGGFVMGGTGKTPTALAIAK 68 (338)
Q Consensus 41 ~~~~pVI~VGNitvGGtGKTP~v~~l~~ 68 (338)
...+.|+.||+ +|+|||-++..+..
T Consensus 26 ~~~~KIvivGd---~gVGKTSLi~r~~~ 50 (205)
T 1gwn_A 26 NVKCKIVVVGD---SQCGKTALLHVFAK 50 (205)
T ss_dssp -CEEEEEEEES---TTSSHHHHHHHHHH
T ss_pred CCCEEEEEECC---CCCCHHHHHHHHHH
T ss_conf 57869999998---99888999999972
No 450
>>3if2_A Aminotransferase; YP_265399.1, structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PSI-2; HET: PLP; 2.50A {Psychrobacter arcticus 273-4} (A:42-103,A:308-335)
Probab=34.86 E-value=25 Score=15.39 Aligned_cols=28 Identities=11% Similarity=0.177 Sum_probs=21.2
Q ss_pred ECCEEECCCCCCHHHHHHHHHHHHC-CCCE
Q ss_conf 8230007888748999999998524-7315
Q gi|254780401|r 49 VGGFVMGGTGKTPTALAIAKAVIDK-NLKP 77 (338)
Q Consensus 49 VGNitvGGtGKTP~v~~l~~~l~~~-g~~~ 77 (338)
|||- -|=.||.+|...||+.|.++ ||.|
T Consensus 35 lgnY-DgPQG~~~Fi~ALA~lLn~~YGW~~ 63 (90)
T 3if2_A 35 XANY-SNPQGDSAFIDALVGFFNRHYDWNP 63 (90)
T ss_dssp HHSC-CCTTCCHHHHHHHHHHHHHHHCCCC
T ss_pred CCCC-CCCCCCHHHHHHHHHHHHHHHCCCC
T ss_conf 2628-9986799999999999999858995
No 451
>>1qyc_A Phenylcoumaran benzylic ether reductase PT1; NADPH-dependent aromatic alcohol reductases, pcber, PLR, IFR, lignans, isoflavonoids, plant protein; 2.20A {Pinus taeda} (A:)
Probab=34.83 E-value=29 Score=14.97 Aligned_cols=33 Identities=27% Similarity=0.314 Sum_probs=26.3
Q ss_pred EEECCCCCCHHHHHHHHHHHHCCCCEEEEEECCCC
Q ss_conf 00078887489999999985247315987604578
Q gi|254780401|r 52 FVMGGTGKTPTALAIAKAVIDKNLKPGFLSRGYGR 86 (338)
Q Consensus 52 itvGGtGKTP~v~~l~~~l~~~g~~~~ilsRGYg~ 86 (338)
+.+||||-. =.++++.|.++|+.+.+++|.-..
T Consensus 8 lVtGatG~i--G~~i~~~Ll~~g~~v~~~~r~~~~ 40 (308)
T 1qyc_A 8 LLIGATGYI--GRHVAKASLDLGHPTFLLVRESTA 40 (308)
T ss_dssp EEESTTSTT--HHHHHHHHHHTTCCEEEECCCCCT
T ss_pred EEECCCCHH--HHHHHHHHHHCCCEEEEEECCCCC
T ss_conf 998998289--999999999787979999889755
No 452
>>2zwm_A Transcriptional regulatory protein YYCF; two-component system, response regulator, dimerization domain, phosphorylation site, cytoplasm; 2.04A {Bacillus subtilis} (A:)
Probab=34.79 E-value=29 Score=14.97 Aligned_cols=25 Identities=24% Similarity=0.359 Sum_probs=11.2
Q ss_pred CCCCCCHHHHHHHHCCCCCCEEEEC
Q ss_conf 3465201225664102457479971
Q gi|254780401|r 117 TIVTSDRKIGVQMLLQEGVDIIIMD 141 (338)
Q Consensus 117 v~V~~~R~~~~~~~~~~~~diiIlD 141 (338)
|.++.+-.+|...+.+..+|+||+|
T Consensus 29 v~~a~~~~eAl~~l~~~~~dlvi~D 53 (130)
T 2zwm_A 29 VHCAHDGNEAVEMVEELQPDLILLD 53 (130)
T ss_dssp EEEECSHHHHHHHHHHHCCSEEEEE
T ss_pred EEEECCHHHHHHHHHHCCCCEEECC
T ss_conf 9995869999999983799989814
No 453
>>1zd8_A GTP:AMP phosphotransferase mitochondrial; ATP:AMP phosphotransferase, myokinase, structural genomics, structural genomics consortium, SGC; 1.48A {Homo sapiens} PDB: 2ak3_A* (A:)
Probab=34.78 E-value=15 Score=16.91 Aligned_cols=24 Identities=21% Similarity=0.274 Sum_probs=18.2
Q ss_pred EEEECCEEECCCCCCHHHHHHHHHHHH
Q ss_conf 899823000788874899999999852
Q gi|254780401|r 46 VICVGGFVMGGTGKTPTALAIAKAVID 72 (338)
Q Consensus 46 VI~VGNitvGGtGKTP~v~~l~~~l~~ 72 (338)
|+.+|.- |+|||-++-.||+.|.-
T Consensus 10 I~l~G~~---GsGKSTlak~La~~l~~ 33 (227)
T 1zd8_A 10 AVIMGAP---GSGKGTVSSRITTHFEL 33 (227)
T ss_dssp EEEEECT---TSSHHHHHHHHHHHSSS
T ss_pred EEEECCC---CCCHHHHHHHHHHHHCC
T ss_conf 9998999---99879999999999799
No 454
>>3gh5_A HEX1, beta-hexosaminidase; beta-N-acetylhexosaminidase, glycosphingolipids, GH20, hydrolase, structural genomics, NPPSFA; HET: NAG; 1.60A {Paenibacillus SP} PDB: 3gh4_A* 3gh7_A* (A:182-494)
Probab=34.77 E-value=29 Score=14.96 Aligned_cols=30 Identities=17% Similarity=0.014 Sum_probs=21.8
Q ss_pred HCCCCCCEEEECCCCCCCCCCCEEEEEEEC
Q ss_conf 102457479971832234412306999961
Q gi|254780401|r 130 LLQEGVDIIIMDDGFHSADLQADFSLIVVN 159 (338)
Q Consensus 130 ~~~~~~diiIlDDGfQh~~l~rdl~Ivl~d 159 (338)
+.+.+..+++.+|++.+..+.+|..+..-.
T Consensus 184 l~~~gk~~~~W~D~l~~~~~~~d~~~~~W~ 213 (313)
T 3gh5_A 184 ANSYGKKVVGWDPSDTSSGATSDSVLQNWT 213 (313)
T ss_dssp HHHTTCEEEEETTGGGCTTCCTTCEEEECS
T ss_pred HHHCCCEEEEECCCCCCCCCCCCCEEEECC
T ss_conf 998498689851202455578743476306
No 455
>>1fnb_A Ferredoxin-NADP+ reductase; oxidoreductase (NADP+(A),ferredoxin(A)); HET: FAD; 1.70A {Spinacia oleracea} (A:156-314)
Probab=34.75 E-value=19 Score=16.31 Aligned_cols=27 Identities=26% Similarity=0.311 Sum_probs=20.6
Q ss_pred CCCEEEECCEEECCCCCCHHHHHHHHHHHHC
Q ss_conf 8988998230007888748999999998524
Q gi|254780401|r 43 PIPVICVGGFVMGGTGKTPTALAIAKAVIDK 73 (338)
Q Consensus 43 ~~pVI~VGNitvGGtGKTP~v~~l~~~l~~~ 73 (338)
.-|+|.| +||||=||+.-.|-..+...
T Consensus 7 ~~~~v~i----agGtGIaP~~s~l~~~~~~~ 33 (159)
T 1fnb_A 7 NATIIML----GTGTGIAPFRSFLWKMFFEK 33 (159)
T ss_dssp TCEEEEE----EEGGGGHHHHHHHHHHHTCC
T ss_pred CCCEEEE----ECCCCCHHHHHHHHHHHHHH
T ss_conf 8748999----74766017999999999853
No 456
>>2bcg_Y Protein YP2, GTP-binding protein YPT1; RABGTPase, geranylgeranylation, vesicular transport, protein transport; HET: GDP GER; 1.48A {Saccharomyces cerevisiae} (Y:)
Probab=34.72 E-value=19 Score=16.30 Aligned_cols=25 Identities=20% Similarity=0.377 Sum_probs=17.3
Q ss_pred CCCCCEEEECCEEECCCCCCHHHHHHHH
Q ss_conf 3889889982300078887489999999
Q gi|254780401|r 41 HAPIPVICVGGFVMGGTGKTPTALAIAK 68 (338)
Q Consensus 41 ~~~~pVI~VGNitvGGtGKTP~v~~l~~ 68 (338)
...+.|+.||+ +|+|||-++..++.
T Consensus 6 ~~~~KIviiGd---~gVGKTsli~r~~~ 30 (206)
T 2bcg_Y 6 DYLFKLLLIGN---SGVGKSCLLLRFSD 30 (206)
T ss_dssp SEEEEEEEEES---TTSSHHHHHHHHHH
T ss_pred CEEEEEEEECC---CCCCHHHHHHHHHC
T ss_conf 78889999999---99198999999960
No 457
>>1v5w_A DMC1, meiotic recombination protein DMC1/LIM15 homolog; DNA-binding protein, ring protein, octamer, AAA ATPase; 3.20A {Homo sapiens} (A:104-343)
Probab=34.71 E-value=12 Score=17.79 Aligned_cols=27 Identities=15% Similarity=-0.152 Sum_probs=21.5
Q ss_pred CCCCCCHHHHHHHHHHHHCCCCEEEEE
Q ss_conf 788874899999999852473159876
Q gi|254780401|r 55 GGTGKTPTALAIAKAVIDKNLKPGFLS 81 (338)
Q Consensus 55 GGtGKTP~v~~l~~~l~~~g~~~~ils 81 (338)
-|||||-+++-++-.....|..+...+
T Consensus 28 pG~GKT~l~~q~~~~~~~~~~~~~~~~ 54 (240)
T 1v5w_A 28 FRTGKTQLSHTLCVTAQLPGAGGYPGG 54 (240)
T ss_dssp TTCTHHHHHHHHHHHTTSCBTTTBCCC
T ss_pred CCCHHHHHHHHHHHHHHHHHHHCCCCC
T ss_conf 683499999999999986454056676
No 458
>>2eix_A NADH-cytochrome B5 reductase; flavoprotein, FAD-binding domain, NADH-binding, oxidoreductase; HET: FAD; 1.56A {Physarum polycephalum} (A:111-243)
Probab=34.61 E-value=23 Score=15.61 Aligned_cols=21 Identities=29% Similarity=0.468 Sum_probs=16.7
Q ss_pred EECCCCCCHHHHHHHHHHHHC
Q ss_conf 007888748999999998524
Q gi|254780401|r 53 VMGGTGKTPTALAIAKAVIDK 73 (338)
Q Consensus 53 tvGGtGKTP~v~~l~~~l~~~ 73 (338)
.+||||=||+...|-..++..
T Consensus 12 iagG~GItP~~s~l~~~~~~~ 32 (133)
T 2eix_A 12 IAGGTGITPMLQVARAIIKNP 32 (133)
T ss_dssp EEEGGGHHHHHHHHHHHHTCT
T ss_pred EECCCCCCCHHHHHHHHHHHC
T ss_conf 971577640789999999730
No 459
>>2c29_D Dihydroflavonol 4-reductase; flavonoids, short dehydrogenase reductase, NADPH, dihydroquercetin, rossmann fold, oxidoreductase; HET: NAP DQH; 1.81A {Vitis vinifera} PDB: 2iod_A* 2nnl_D* 3bxx_A* 3c1t_A* (D:)
Probab=34.54 E-value=29 Score=14.94 Aligned_cols=33 Identities=12% Similarity=0.128 Sum_probs=27.1
Q ss_pred EEECCCCCCHHHHHHHHHHHHCCCCEEEEEECCCC
Q ss_conf 00078887489999999985247315987604578
Q gi|254780401|r 52 FVMGGTGKTPTALAIAKAVIDKNLKPGFLSRGYGR 86 (338)
Q Consensus 52 itvGGtGKTP~v~~l~~~l~~~g~~~~ilsRGYg~ 86 (338)
+.+|||| =+=.+|++.|.+.|+.+.++.|.-..
T Consensus 9 LITGatG--fiG~~lv~~Ll~~~~~v~~~~~~~~~ 41 (337)
T 2c29_D 9 CVTGASG--FIGSWLVMRLLERGYTVRATVRDPTN 41 (337)
T ss_dssp EETTTTS--HHHHHHHHHHHHTTCEEEEEESCTTC
T ss_pred EEECCCC--HHHHHHHHHHHHCCCEEEEEECCCCC
T ss_conf 9978987--89999999999783989999788752
No 460
>>1tmy_A CHEY protein, TMY; chemotaxis, phosphoryl transfer, signal transduction; 1.90A {Thermotoga maritima} (A:)
Probab=34.54 E-value=17 Score=16.53 Aligned_cols=44 Identities=16% Similarity=0.193 Sum_probs=28.3
Q ss_pred CCCCCHHHHHHHHCCCCCCEEEECCCC----------CCCCCCCEEEEEEECCC
Q ss_conf 465201225664102457479971832----------23441230699996184
Q gi|254780401|r 118 IVTSDRKIGVQMLLQEGVDIIIMDDGF----------HSADLQADFSLIVVNSH 161 (338)
Q Consensus 118 ~V~~~R~~~~~~~~~~~~diiIlDDGf----------Qh~~l~rdl~Ivl~d~~ 161 (338)
.++.+-.+|...+.+..+|+||+|-.+ |=++..++.-++++.+.
T Consensus 31 ~~a~~~~~al~~~~~~~~dlii~D~~lP~~~G~~l~~~i~~~~~~~pvi~lt~~ 84 (120)
T 1tmy_A 31 GEATNGREAVEKYKELKPDIVTMDITMPEMNGIDAIKEIMKIDPNAKIIVCSAM 84 (120)
T ss_dssp EEESSHHHHHHHHHHHCCSEEEEECSCGGGCHHHHHHHHHHHCTTCCEEEEECT
T ss_pred EEECCHHHHHHHHHHCCCCEEEEECCCCCCCHHHHHHHHHHHCCCCCEEEEECC
T ss_conf 998899999999984689889984568999789999999986889978999734
No 461
>>2hi0_A Putative phosphoglycolate phosphatase; YP_619066.1, structural genomics, joint center for structural genomics, JCSG; HET: MSE; 1.51A {Lactobacillus delbrueckii} (A:1-18,A:107-240)
Probab=34.51 E-value=19 Score=16.31 Aligned_cols=26 Identities=23% Similarity=0.266 Sum_probs=18.8
Q ss_pred CHHHHHHHHHHHHCCCCEEEEEECCC
Q ss_conf 48999999998524731598760457
Q gi|254780401|r 60 TPTALAIAKAVIDKNLKPGFLSRGYG 85 (338)
Q Consensus 60 TP~v~~l~~~l~~~g~~~~ilsRGYg 85 (338)
-|-+.-+.+.|+++|++.+|+|.+..
T Consensus 24 ~pGv~e~L~~Lk~~G~~l~i~Tn~~~ 49 (152)
T 2hi0_A 24 FPGILDLXKNLRQKGVKLAVVSNKPN 49 (152)
T ss_dssp CTTHHHHHHHHHHTTCEEEEEEEEEH
T ss_pred CCCHHHHHHHHHHCCCCCCCCCCCCH
T ss_conf 78546899998641245211356736
No 462
>>1tvc_A Methane monooxygenase component C, methane monooxygenase; FAD-binding, NADH-binding, oxidoreductase; HET: FDA; NMR {Methylococcus capsulatus} (A:114-250)
Probab=34.45 E-value=29 Score=14.93 Aligned_cols=34 Identities=21% Similarity=0.198 Sum_probs=24.1
Q ss_pred CCEEEECCEEECCCCCCHHHHHHHHHHHHCCCCEEEEE
Q ss_conf 98899823000788874899999999852473159876
Q gi|254780401|r 44 IPVICVGGFVMGGTGKTPTALAIAKAVIDKNLKPGFLS 81 (338)
Q Consensus 44 ~pVI~VGNitvGGtGKTP~v~~l~~~l~~~g~~~~ils 81 (338)
-|+|. .+||||=||+.-.|-..+........++-
T Consensus 5 ~~iv~----iAgG~GIaP~~s~l~~~~~~~~~~~v~l~ 38 (137)
T 1tvc_A 5 APRYF----VAGGTGLAPVVSMVRQMQEWTAPNETRIY 38 (137)
T ss_dssp SCEEE----EEESSTTHHHHHHHHHHHHHTCCSCEEEE
T ss_pred CCEEE----EECCCCCCCCCCCEEEECCCCCCCCCEEE
T ss_conf 54699----96487864422210000124777420247
No 463
>>1ksh_A ARF-like protein 2; small GTPase, small GTP-binding protein, ARF family; HET: CME GDP; 1.80A {Mus musculus} (A:)
Probab=34.40 E-value=17 Score=16.53 Aligned_cols=26 Identities=15% Similarity=0.235 Sum_probs=18.0
Q ss_pred CCCCCCCEEEECCEEECCCCCCHHHHHHH
Q ss_conf 43388988998230007888748999999
Q gi|254780401|r 39 RLHAPIPVICVGGFVMGGTGKTPTALAIA 67 (338)
Q Consensus 39 ~~~~~~pVI~VGNitvGGtGKTP~v~~l~ 67 (338)
.....+.|+.||+ +|+|||-++..++
T Consensus 14 ~~~~~~kI~iiG~---~gvGKTSLi~r~~ 39 (186)
T 1ksh_A 14 QKERELRLLMLGL---DNAGKTTILKKFN 39 (186)
T ss_dssp ---CCEEEEEECS---TTSSHHHHHHHHT
T ss_pred CCCCEEEEEEECC---CCCCHHHHHHHHH
T ss_conf 4664679999998---9999899999982
No 464
>>1db3_A GDP-mannose 4,6-dehydratase; NADP, GDP-fucose, lyase; 2.30A {Escherichia coli} (A:1-190)
Probab=34.37 E-value=29 Score=14.92 Aligned_cols=33 Identities=18% Similarity=0.257 Sum_probs=25.9
Q ss_pred EEECCCCCCHHHHHHHHHHHHCCCCEEEEEECCCC
Q ss_conf 00078887489999999985247315987604578
Q gi|254780401|r 52 FVMGGTGKTPTALAIAKAVIDKNLKPGFLSRGYGR 86 (338)
Q Consensus 52 itvGGtGKTP~v~~l~~~l~~~g~~~~ilsRGYg~ 86 (338)
+.+|||| -+=.++++.|.++|+.+.++.|.-..
T Consensus 5 lVtGatG--~iG~~lv~~Ll~~g~~v~~~~~~~~~ 37 (190)
T 1db3_A 5 LITGVTG--QDGSYLAEFLLEKGYEVHGIKRRASS 37 (190)
T ss_dssp EEETTTS--HHHHHHHHHHHHTTCEEEEECC----
T ss_pred EEECCCC--HHHHHHHHHHHHCCCEEEEEECCCCC
T ss_conf 9957787--89999999999785989999789875
No 465
>>1y63_A LMAJ004144AAA protein; structural genomics, protein structure initiative, PSI, SGPP; HET: ADP; 1.70A {Leishmania major strain friedlin} (A:)
Probab=34.30 E-value=16 Score=16.82 Aligned_cols=24 Identities=38% Similarity=0.428 Sum_probs=17.5
Q ss_pred EEEECCEEECCCCCCHHHHHHHHHHHH
Q ss_conf 899823000788874899999999852
Q gi|254780401|r 46 VICVGGFVMGGTGKTPTALAIAKAVID 72 (338)
Q Consensus 46 VI~VGNitvGGtGKTP~v~~l~~~l~~ 72 (338)
|+..|.- |+|||-++..|++.|..
T Consensus 13 I~i~G~~---GsGKSTla~~La~~l~~ 36 (184)
T 1y63_A 13 ILITGTP---GTGKTSMAEMIAAELDG 36 (184)
T ss_dssp EEEECST---TSSHHHHHHHHHHHSTT
T ss_pred EEEECCC---CCCHHHHHHHHHHHHCC
T ss_conf 9998299---99989999999998589
No 466
>>3fho_A ATP-dependent RNA helicase DBP5; mRNA export, ATPase, translation termination, ATP-binding, cytoplasm, hydrolase, membrane; 2.80A {Schizosaccharomyces pombe} (A:1-326)
Probab=34.18 E-value=30 Score=14.90 Aligned_cols=20 Identities=5% Similarity=-0.067 Sum_probs=14.3
Q ss_pred ECCCCHHHHHHHHHHHCCCC
Q ss_conf 41553578999887401000
Q gi|254780401|r 229 SGIADTEKFFTTVRQLGALI 248 (338)
Q Consensus 229 sGIa~P~~F~~~L~~~g~~i 248 (338)
.-|+.|.++...++......
T Consensus 238 IVIgTPgRLldlik~~~l~L 257 (326)
T 3fho_A 238 IVIGTPGTVMDLMKRRQLDA 257 (326)
T ss_dssp EEEECHHHHHHHHHTTCSCC
T ss_pred EEECCCCHHHHHHHHHCCCH
T ss_conf 99569814999998723663
No 467
>>2gas_A Isoflavone reductase; NADPH-dependent reductase, oxidoreductase; 1.60A {Medicago sativa} (A:1-144)
Probab=34.10 E-value=30 Score=14.89 Aligned_cols=33 Identities=24% Similarity=0.156 Sum_probs=26.1
Q ss_pred EEECCCCCCHHHHHHHHHHHHCCCCEEEEEECCCC
Q ss_conf 00078887489999999985247315987604578
Q gi|254780401|r 52 FVMGGTGKTPTALAIAKAVIDKNLKPGFLSRGYGR 86 (338)
Q Consensus 52 itvGGtGKTP~v~~l~~~l~~~g~~~~ilsRGYg~ 86 (338)
+..||||-. =..|++.|.++|+.+.++.|--..
T Consensus 6 lVtGatG~i--G~~l~~~L~~~g~~v~~~~~~~~~ 38 (144)
T 2gas_A 6 LILGPTGAI--GRHIVWASIKAGNPTYALVRKTIT 38 (144)
T ss_dssp EEESTTSTT--HHHHHHHHHHHTCCEEEEECCSCC
T ss_pred EEECCCCHH--HHHHHHHHHHCCCEEEEEECCCCC
T ss_conf 998999689--999999999788949999778643
No 468
>>2iye_A Copper-transporting ATPase; hydrolase, P-type ATPase, CPX-ATPase, COPB, heavy metal translocation; 2.6A {Sulfolobus solfataricus} (A:1-39,A:139-263)
Probab=34.09 E-value=30 Score=14.89 Aligned_cols=89 Identities=20% Similarity=0.244 Sum_probs=57.0
Q ss_pred ECCEEECCCCCCHHHHHHHHHHHHCCCCEEEEEECCCCCCCCCEEEECCCCCHHHHCCHHHHHHHCCC---CC--C-CCC
Q ss_conf 82300078887489999999985247315987604578777755871456788770421233220576---34--6-520
Q gi|254780401|r 49 VGGFVMGGTGKTPTALAIAKAVIDKNLKPGFLSRGYGRKSRISFRVDLEKHSAYDVGDEPLLLARRAV---TI--V-TSD 122 (338)
Q Consensus 49 VGNitvGGtGKTP~v~~l~~~l~~~g~~~~ilsRGYg~~~~~~~~v~~~~~~~~~vGDEp~lla~~~p---v~--V-~~~ 122 (338)
|.-+...-||--|-+....+.|++.|+++.++|-... ..+.-+++... ++ + ..+
T Consensus 28 ~~~~~~~~~~~~P~a~e~I~~L~~~Gi~v~IiTGD~~--------------------~~a~~ia~~lgI~~v~a~v~p~~ 87 (164)
T 2iye_A 28 IDTIIFDKTGTLPNLKDYLEKLKNEGLKIIILSGDKE--------------------DKVKELSKELNIQEYYSNLSPED 87 (164)
T ss_dssp CCEEEEESTTTTSCCHHHHHHHHGGGCEEEEECSSCH--------------------HHHHHHHHHHTCSEEECSCCHHH
T ss_pred CCEEEECCCCCCCHHHHHHHHHHHCCCCEEEECCCCC--------------------CCCHHHHHHHCHHHHHHCCCHHH
T ss_conf 9999991885231299999999975992798238742--------------------11014799853025340235788
Q ss_pred HHHHHHHHCCCCCCEEEECCCCCCCCCCCEEEEEE
Q ss_conf 12256641024574799718322344123069999
Q gi|254780401|r 123 RKIGVQMLLQEGVDIIIMDDGFHSADLQADFSLIV 157 (338)
Q Consensus 123 R~~~~~~~~~~~~diiIlDDGfQh~~l~rdl~Ivl 157 (338)
+.+-++.+.+.+-.++..-||.-+...-+--++-+
T Consensus 88 K~~iv~~L~~~g~~Va~VGDg~ND~~aL~~AdVGI 122 (164)
T 2iye_A 88 KVRIIEKLKQNGNKVLMIGDGVNDAAALALADVSV 122 (164)
T ss_dssp HHHHHHHHHHTTCCEEEEECSTTTHHHHHHSSEEE
T ss_pred HHHHHHHHHCCCCEEEEEECCCCHHHHHHHCCEEE
T ss_conf 98888455225605899942310466886487999
No 469
>>2a9k_A RAS-related protein RAL-A; bacterial ADP-ribosyltransferase, RAL, RHO, GDP-binding; HET: GDP NAD; 1.73A {Homo sapiens} (A:)
Probab=34.04 E-value=21 Score=16.02 Aligned_cols=25 Identities=40% Similarity=0.513 Sum_probs=16.2
Q ss_pred CCCCCEEEECCEEECCCCCCHHHHHHHH
Q ss_conf 3889889982300078887489999999
Q gi|254780401|r 41 HAPIPVICVGGFVMGGTGKTPTALAIAK 68 (338)
Q Consensus 41 ~~~~pVI~VGNitvGGtGKTP~v~~l~~ 68 (338)
...+.|+.||+ +|+|||-++..++.
T Consensus 16 ~~~~KIvivGd---~~vGKTSLl~r~~~ 40 (187)
T 2a9k_A 16 LALHKVIMVGS---GGVGKSALTLQFMY 40 (187)
T ss_dssp -CEEEEEEECS---TTSSHHHHHHHHHH
T ss_pred CCEEEEEEECC---CCCCHHHHHHHHHH
T ss_conf 63039999997---99688999999972
No 470
>>1m7b_A RND3/RHOE small GTP-binding protein; small GTPase, signaling protein; HET: GTP; 2.00A {Homo sapiens} (A:)
Probab=33.99 E-value=20 Score=16.08 Aligned_cols=27 Identities=26% Similarity=0.345 Sum_probs=18.0
Q ss_pred CCCCCCCEEEECCEEECCCCCCHHHHHHHH
Q ss_conf 433889889982300078887489999999
Q gi|254780401|r 39 RLHAPIPVICVGGFVMGGTGKTPTALAIAK 68 (338)
Q Consensus 39 ~~~~~~pVI~VGNitvGGtGKTP~v~~l~~ 68 (338)
+++..+.|+.||+ +|.|||-++..+.+
T Consensus 3 ~~~~~~KivilGd---~~vGKTsLi~r~~~ 29 (184)
T 1m7b_A 3 NQNVKCKIVVVGD---SQCGKTALLHVFAK 29 (184)
T ss_dssp ---CEEEEEEEES---TTSSHHHHHHHHHH
T ss_pred CCCEEEEEEEECC---CCCCHHHHHHHHHH
T ss_conf 8715579999998---99498999999971
No 471
>>3dxb_A Thioredoxin N-terminally fused to PUF60(UHM); splicing, alternative splicing, FBP interacting repressor, RRM, electron transport; 2.20A {Escherichia coli O157} (A:121-222)
Probab=33.96 E-value=30 Score=14.88 Aligned_cols=34 Identities=6% Similarity=-0.096 Sum_probs=29.8
Q ss_pred CCCCEEEECCEEECCCCCCHHHHHHHHHHHHCCC
Q ss_conf 8898899823000788874899999999852473
Q gi|254780401|r 42 APIPVICVGGFVMGGTGKTPTALAIAKAVIDKNL 75 (338)
Q Consensus 42 ~~~pVI~VGNitvGGtGKTP~v~~l~~~l~~~g~ 75 (338)
.|..+|.|+||.+++...+=.-.-|.+++.+-|.
T Consensus 2 ~p~~~i~v~nl~v~~l~~~~~~~~l~~~f~~~G~ 35 (102)
T 3dxb_A 2 MESTVMVLRNMVDPKDIDDDLEGEVTEECGKFGA 35 (102)
T ss_dssp CBCSEEEEESSCCGGGCCTTHHHHHHHHHTTTSC
T ss_pred CCHHHHHHHHHCCCHHHHHHHHHHHHHHHHHCCC
T ss_conf 4104678887426223567888999999976597
No 472
>>2gkg_A Response regulator homolog; social motility, receiver domain, signalling, high resolution, signaling protein; 1.00A {Myxococcus xanthus} PDB: 2i6f_A 2nt4_A 2nt3_A (A:)
Probab=33.92 E-value=30 Score=14.87 Aligned_cols=29 Identities=17% Similarity=0.261 Sum_probs=16.1
Q ss_pred CCCCCCCHHHHHHHHCCCCCCEEEECCCC
Q ss_conf 63465201225664102457479971832
Q gi|254780401|r 116 VTIVTSDRKIGVQMLLQEGVDIIIMDDGF 144 (338)
Q Consensus 116 pv~V~~~R~~~~~~~~~~~~diiIlDDGf 144 (338)
-|.+..+=.+|.+.+.+..+|+||+|..+
T Consensus 31 ~v~~a~~~~~al~~l~~~~~d~iilD~~l 59 (127)
T 2gkg_A 31 TVDETTDGKGSVEQIRRDRPDLVVLAVDL 59 (127)
T ss_dssp EEEEECCHHHHHHHHHHHCCSEEEEESBC
T ss_pred EEEEECCHHHHHHHHHHCCCCEEEEEECC
T ss_conf 99998684999999981799799743001
No 473
>>1sb8_A WBPP; epimerase, 4-epimerase, UDP-galnac, UDP-GLCNAC, SDR, GALE, NAD, SYK, UDP, N- acetylglucosamine, N-acetylgalactosamine, UDP-GLC; HET: NAD UD2; 2.10A {Pseudomonas aeruginosa} (A:)
Probab=33.85 E-value=30 Score=14.86 Aligned_cols=33 Identities=12% Similarity=0.042 Sum_probs=27.2
Q ss_pred EEECCCCCCHHHHHHHHHHHHCCCCEEEEEECCCC
Q ss_conf 00078887489999999985247315987604578
Q gi|254780401|r 52 FVMGGTGKTPTALAIAKAVIDKNLKPGFLSRGYGR 86 (338)
Q Consensus 52 itvGGtGKTP~v~~l~~~l~~~g~~~~ilsRGYg~ 86 (338)
+.+|||| =+=.+|++.|.++|+.+.++.|....
T Consensus 31 lVTGatG--fiG~~lv~~Ll~~g~~v~~~~~~~~~ 63 (352)
T 1sb8_A 31 LITGVAG--FIGSNLLETLLKLDQKVVGLDNFATG 63 (352)
T ss_dssp EEETTTS--HHHHHHHHHHHHTTCEEEEEECCSSC
T ss_pred EEECCCC--HHHHHHHHHHHHCCCEEEEEECCCCC
T ss_conf 9966878--89999999999784989999788876
No 474
>>2cu2_A Putative mannose-1-phosphate guanylyl transferase; mannose-1-phosphate guanyltransferase, structural genomics; 2.20A {Thermus thermophilus HB8} (A:1-263)
Probab=33.77 E-value=18 Score=16.45 Aligned_cols=39 Identities=10% Similarity=-0.067 Sum_probs=30.1
Q ss_pred CCCCEEEECCEEECCCCCCHHHHHHHHHHHHCCCCEEEEEECCCCC
Q ss_conf 8898899823000788874899999999852473159876045787
Q gi|254780401|r 42 APIPVICVGGFVMGGTGKTPTALAIAKAVIDKNLKPGFLSRGYGRK 87 (338)
Q Consensus 42 ~~~pVI~VGNitvGGtGKTP~v~~l~~~l~~~g~~~~ilsRGYg~~ 87 (338)
.|.|.+-| .|+.|+..+..+.|.+.|.+-.++..||...
T Consensus 24 ~PK~Li~v-------~G~kpli~~~i~~l~~~gi~~iivv~gy~~~ 62 (263)
T 2cu2_A 24 RPKPFLPL-------FEGKTLLEATLERLAPLVPPERTLLAVRRDQ 62 (263)
T ss_dssp BCGGGCBC-------GGGCBHHHHHHHHHTTTSCGGGEEEEEEGGG
T ss_pred CCCCCEEC-------CCCCCHHHHHHHHHHCCCCCCCEEEEEEHHH
T ss_conf 99331006-------9999899999997636588676399972789
No 475
>>2qdx_A Ferredoxin reductase; oxidoreductase; HET: FAD; 1.55A {Pseudomonas aeruginosa} PDB: 3crz_A* 1a8p_A* (A:100-257)
Probab=33.67 E-value=14 Score=17.17 Aligned_cols=34 Identities=18% Similarity=0.148 Sum_probs=24.4
Q ss_pred CCEEEECCEEECCCCCCHHHHHHHHHHHHCCCCEEEEE
Q ss_conf 98899823000788874899999999852473159876
Q gi|254780401|r 44 IPVICVGGFVMGGTGKTPTALAIAKAVIDKNLKPGFLS 81 (338)
Q Consensus 44 ~pVI~VGNitvGGtGKTP~v~~l~~~l~~~g~~~~ils 81 (338)
-+++.| .||||=||+.-.|-..+.......+.+-
T Consensus 8 ~~iv~i----agGtGIaP~~s~l~~~~~~~~~~~v~l~ 41 (158)
T 2qdx_A 8 KHLYLL----STGTGMAPFLSVIQDPETYERYEKVILV 41 (158)
T ss_dssp SEEEEE----EEGGGGHHHHHHTTCHHHHHHCSEEEEE
T ss_pred CEEEEE----ECCCCCCCCHHHHHHHHHHCCCCCEEEE
T ss_conf 327999----8067733210666666764368768999
No 476
>>2bgi_A Ferredoxin-NADP(H) reductase; ferredoxin(flavodoxin)-NADP(H) reductase, flavoproteins, electron transfer, oxidoreductase; HET: FAD HTG; 1.68A {Rhodobacter capsulatus} PDB: 2bgj_A* 2vnh_A* 2vni_A* 2vnj_A* 2vnk_A* (A:113-272)
Probab=33.56 E-value=17 Score=16.55 Aligned_cols=35 Identities=14% Similarity=0.138 Sum_probs=24.5
Q ss_pred CCCEEEECCEEECCCCCCHHHHHHHHHHHHCCCCEEEEE
Q ss_conf 898899823000788874899999999852473159876
Q gi|254780401|r 43 PIPVICVGGFVMGGTGKTPTALAIAKAVIDKNLKPGFLS 81 (338)
Q Consensus 43 ~~pVI~VGNitvGGtGKTP~v~~l~~~l~~~g~~~~ils 81 (338)
+-|||.| +||||=||+...|-..+.........+-
T Consensus 8 ~~~ivli----agGtGItP~~sil~~l~~~~~~~~v~l~ 42 (160)
T 2bgi_A 8 GKRLWFL----ATGTGIAPFASLMREPEAYEKFDEVIMM 42 (160)
T ss_dssp CSEEEEE----EEGGGGHHHHHHTTCGGGGTSCSEEEEE
T ss_pred CCCCEEE----ECCCCCCHHHHHHHHHHHCCCCCEEEEE
T ss_conf 6540478----6267764155888877641675169999
No 477
>>1y1p_A ARII, aldehyde reductase II; rossmann fold, short chain dehydrogenase reductase, oxidoreductase; HET: NMN AMP; 1.60A {Sporidiobolus salmonicolor} (A:)
Probab=33.49 E-value=30 Score=14.82 Aligned_cols=30 Identities=20% Similarity=0.305 Sum_probs=24.6
Q ss_pred EEECCCCCCHHHHHHHHHHHHCCCCEEEEEEC
Q ss_conf 00078887489999999985247315987604
Q gi|254780401|r 52 FVMGGTGKTPTALAIAKAVIDKNLKPGFLSRG 83 (338)
Q Consensus 52 itvGGtGKTP~v~~l~~~l~~~g~~~~ilsRG 83 (338)
|.+|||| -+=.+|++.|.++|+.+.++.|-
T Consensus 15 lVTGatG--fiG~~lv~~Ll~~g~~v~~~~~~ 44 (342)
T 1y1p_A 15 LVTGANG--FVASHVVEQLLEHGYKVRGTARS 44 (342)
T ss_dssp EEETTTS--HHHHHHHHHHHHTTCEEEEEESS
T ss_pred EEECCCC--HHHHHHHHHHHHCCCEEEEEECC
T ss_conf 9989988--99999999999785989999688
No 478
>>1d1q_A Tyrosine phosphatase (E.C.3.1.3.48); beta-alpha-beta, hydrolase; HET: 4NP; 1.70A {Saccharomyces cerevisiae} (A:)
Probab=33.48 E-value=30 Score=14.82 Aligned_cols=93 Identities=22% Similarity=0.224 Sum_probs=46.6
Q ss_pred CCCCEEEECCEEECCCCCCHHHHHHHHHHHH-CCC---CEEEEEECCCCCCCCCEEEECCCCCHHHHCCHHHHHHHCCCC
Q ss_conf 8898899823000788874899999999852-473---159876045787777558714567887704212332205763
Q gi|254780401|r 42 APIPVICVGGFVMGGTGKTPTALAIAKAVID-KNL---KPGFLSRGYGRKSRISFRVDLEKHSAYDVGDEPLLLARRAVT 117 (338)
Q Consensus 42 ~~~pVI~VGNitvGGtGKTP~v~~l~~~l~~-~g~---~~~ilsRGYg~~~~~~~~v~~~~~~~~~vGDEp~lla~~~pv 117 (338)
..|-.||.||+ +..|++..+.+.+-. +|. .+-|-|.|=.....+.. .+..+.. .++.++--
T Consensus 8 ~~ilFVC~gN~-----cRSpmAE~i~~~~~~~~~l~~~~~~v~SAG~~~~~~~~~----~~~~a~~------~l~~~gi~ 72 (161)
T 1d1q_A 8 ISVAFIALGNF-----CRSPMAEAIFKHEVEKANLENRFNKIDSFGTSNYHVGES----PDHRTVS------ICKQHGVK 72 (161)
T ss_dssp EEEEEEESSSS-----SHHHHHHHHHHHHHHHTTCGGGEEEEEEEESSCTTBTCC----CCHHHHH------HHHHTTCC
T ss_pred CEEEEECCCCH-----HHHHHHHHHHHHHHHHCCCCCCEEEEECCCCCCCCCCCC----CCHHHHH------HHHHCCCC
T ss_conf 76999869838-----499999999999998769976647885343466778999----8999999------99984999
Q ss_pred CCCCCHHHHHHHHCCCCCCEEEECCCCCCCCCCC
Q ss_conf 4652012256641024574799718322344123
Q gi|254780401|r 118 IVTSDRKIGVQMLLQEGVDIIIMDDGFHSADLQA 151 (338)
Q Consensus 118 ~V~~~R~~~~~~~~~~~~diiIlDDGfQh~~l~r 151 (338)
.-+..| .+..-.-..+|+||.-|--|+..+.+
T Consensus 73 ~~~~s~--~l~~~~~~~~DlIi~M~~~~~~~l~~ 104 (161)
T 1d1q_A 73 INHKGK--QIKTKHFDEYDYIIGMDESNINNLKK 104 (161)
T ss_dssp CCCCBC--BCCGGGGGTCSEEEESSHHHHHHHHH
T ss_pred CCCCCC--CCCHHHHHHCCEEEECCHHHHHHHHH
T ss_conf 887000--07775752389999888899999998
No 479
>>3be4_A Adenylate kinase; malaria, cryptosporidium parvum nonprotein kinase inhibitors, nucleotide-binding, transferase; HET: AP5; 1.60A {Cryptosporidium parvum iowa II} (A:1-120,A:185-217)
Probab=33.46 E-value=21 Score=16.03 Aligned_cols=22 Identities=32% Similarity=0.469 Sum_probs=15.8
Q ss_pred EEEECCEEECCCCCCHHHHHHHHHH
Q ss_conf 8998230007888748999999998
Q gi|254780401|r 46 VICVGGFVMGGTGKTPTALAIAKAV 70 (338)
Q Consensus 46 VI~VGNitvGGtGKTP~v~~l~~~l 70 (338)
|+.+|. =|+|||-++..|++.+
T Consensus 8 I~IiG~---PGSGKTTlak~LA~~l 29 (153)
T 3be4_A 8 LILIGA---PGSGKGTQCEFIKKEY 29 (153)
T ss_dssp EEEEEC---TTSSHHHHHHHHHHHH
T ss_pred EEEECC---CCCCHHHHHHHHHHHH
T ss_conf 999899---9998799999999987
No 480
>>1lw7_A Transcriptional regulator NADR; NMN, NMN adenylyl transferase, ribosylnicotinamide kinase; HET: NAD; 2.90A {Haemophilus influenzae} (A:162-365)
Probab=33.28 E-value=14 Score=17.28 Aligned_cols=23 Identities=26% Similarity=0.315 Sum_probs=16.4
Q ss_pred EEEECCEEECCCCCCHHHHHHHHHHH
Q ss_conf 89982300078887489999999985
Q gi|254780401|r 46 VICVGGFVMGGTGKTPTALAIAKAVI 71 (338)
Q Consensus 46 VI~VGNitvGGtGKTP~v~~l~~~l~ 71 (338)
|+.+|.- |+|||-++..|++.+.
T Consensus 12 I~i~G~~---GsGKtTla~~La~~~g 34 (204)
T 1lw7_A 12 VAILGGE---SSGKSVLVNKLAAVFN 34 (204)
T ss_dssp EEEECCT---TSHHHHHHHHHHHHTT
T ss_pred EEEECCC---CCCHHHHHHHHHHHHC
T ss_conf 9998278---7887999999999968
No 481
>>1fdr_A Flavodoxin reductase; ferredoxin reductase, flavin, oxidoreductase, flavoprotein; HET: FAD; 1.70A {Escherichia coli} (A:100-248)
Probab=33.13 E-value=22 Score=15.83 Aligned_cols=34 Identities=15% Similarity=-0.003 Sum_probs=21.9
Q ss_pred CCEEEECCEEECCCCCCHHHHHHHHHHHHCCCCEEEEE
Q ss_conf 98899823000788874899999999852473159876
Q gi|254780401|r 44 IPVICVGGFVMGGTGKTPTALAIAKAVIDKNLKPGFLS 81 (338)
Q Consensus 44 ~pVI~VGNitvGGtGKTP~v~~l~~~l~~~g~~~~ils 81 (338)
-++|. .+||||=||+.-.+-..+.........+-
T Consensus 8 ~~ii~----iagG~GItP~~s~i~~~~~~~~~~~v~l~ 41 (149)
T 1fdr_A 8 ETLWM----LATGTAIGPYLSILRLGKDLDRFKNLVLV 41 (149)
T ss_dssp SEEEE----EEEGGGGHHHHHHHHHCCSCTTCSEEEEE
T ss_pred CEEEE----EEECCCCCHHHHHHHHHHHHCCCCEEEEE
T ss_conf 77899----99278756289999998863886379998
No 482
>>1cu1_A Protein (protease/helicase NS3); bifunctional,protease-helicase; 2.50A {Hepatitis c virus} (A:203-343,A:497-638)
Probab=33.09 E-value=31 Score=14.78 Aligned_cols=122 Identities=13% Similarity=0.057 Sum_probs=54.8
Q ss_pred CCEEEEEEECCCCCCCCCCCCCCHHHHHCCHHHHHHHHHHHHCCCCHH---HHHHHCCCCHHHHHHHHCCCCCCCCCEEE
Q ss_conf 230699996184335665537613652100255665145442044124---57763135011122220132111686389
Q gi|254780401|r 150 QADFSLIVVNSHRGLGNGLVFPAGPLRVPLSRQLSYVDAILYVGNKKN---VISSIKNKSVYFAKLKPRLTFDLSGKKVL 226 (338)
Q Consensus 150 ~rdl~Ivl~d~~~~~gn~~llPaGpLREp~~~~l~rad~vi~~~~~~~---~~~~~~~~~i~~~~~~~~~~~~l~~k~v~ 226 (338)
..+.-+|++.|.-+--=.-+++.|+|-|-...+-.--+ -.+.+ .+..+-+ ..+-+....++ +.-..
T Consensus 125 ~~~~qvIllSATpP~~v~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~-----~~~~~~~~~~~-~~~~~ 193 (283)
T 1cu1_A 125 AGARLVVLATATPPGSVSGMFDSSVLCECYDAGCAWYE-----LTPAETSVRLRAYLN-----TPGLPVCQDHL-EFWES 193 (283)
T ss_dssp TTCSEEEEEESSCTTCCSSBCCHHHHHHHHHHHHHTSC-----CCHHHHHHHHHHHHH-----STTSCBCCCCH-HHHHH
T ss_pred CCCCEEEECCCCCCCCCCCCCCCHHHHHHHHHCCCCCC-----CCHHHHHHHHHHHHC-----CCCCHHHHHHH-HHHHH
T ss_conf 87518997346666221577731566574550230112-----762788889998725-----99956666568-89999
Q ss_pred EEECCCCHHH-HHHHHHHHCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCEEEECHHHHHHCCCC
Q ss_conf 8741553578-99988740100001221433234898999999997564798799854663438233
Q gi|254780401|r 227 AFSGIADTEK-FFTTVRQLGALIEQCYSFGDHAHLSDKKIAYLLDQAQQKGLILVTTAKDAMRLHKR 292 (338)
Q Consensus 227 afsGIa~P~~-F~~~L~~~g~~i~~~~~fpDHh~ys~~dl~~i~~~a~~~~~~iiTTEKD~VKL~~~ 292 (338)
.|||..+++. |.+.-++.|.+..-... | =..+..+|+...---=+.=|...|++..
T Consensus 194 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 250 (283)
T 1cu1_A 194 VFTGLTHIDAHFLSQTKQAGDNFPYLVA------Y----QATVCARAQAPPPSWDQMWKCLIRLKPT 250 (283)
T ss_dssp HHHTCCSCCHHHHHHHHHHCCSCHHHHH------H----HHHHHHHTTCCCSCCSGGGGGGGGGGGG
T ss_pred HHCCCCCCCHHHHHHHHHCCCCCHHHHH------H----HHHHHHHCCCCCCCCCHHHHHHHHCCCC
T ss_conf 8607756728776688754888410068------8----9999886279989867233022105767
No 483
>>3ek2_A Enoyl-(acyl-carrier-protein) reductase (NADH); ssgcid, oxidoreductase, structural genomics; 1.90A {Burkholderia pseudomallei 1710B} (A:)
Probab=33.04 E-value=31 Score=14.77 Aligned_cols=32 Identities=25% Similarity=0.268 Sum_probs=25.8
Q ss_pred EEECCCCCCHHHHHHHHHHHHCCCCEEEEEEC
Q ss_conf 00078887489999999985247315987604
Q gi|254780401|r 52 FVMGGTGKTPTALAIAKAVIDKNLKPGFLSRG 83 (338)
Q Consensus 52 itvGGtGKTP~v~~l~~~l~~~g~~~~ilsRG 83 (338)
|.+|+||=.-+=..+|+.|.++|.++.+.+|-
T Consensus 18 lVTGa~~~~GIG~aiA~~la~~Ga~Vil~~r~ 49 (271)
T 3ek2_A 18 LLTGLLSNRSIAYGIAKACKREGAELAFTYVG 49 (271)
T ss_dssp EECCCCSTTSHHHHHHHHHHHTTCEEEEEESS
T ss_pred EEECCCCCCHHHHHHHHHHHHCCCEEEEEECC
T ss_conf 99899886189999999999869999999588
No 484
>>2jk1_A HUPR, hydrogenase transcriptional regulatory protein HUPR1; nucleotide-binding, transcription regulation; 2.10A {Rhodobacter capsulatus} PDB: 2vui_B 2vuh_B (A:)
Probab=33.04 E-value=22 Score=15.88 Aligned_cols=26 Identities=23% Similarity=0.363 Sum_probs=10.9
Q ss_pred CCCCCCCHHHHHHHHCCCCCCEEEEC
Q ss_conf 63465201225664102457479971
Q gi|254780401|r 116 VTIVTSDRKIGVQMLLQEGVDIIIMD 141 (338)
Q Consensus 116 pv~V~~~R~~~~~~~~~~~~diiIlD 141 (338)
.+.++.+-.+|.+.+.+..+|+||+|
T Consensus 26 ~v~~a~~~~~al~~l~~~~~dlillD 51 (139)
T 2jk1_A 26 DVLTAQGAEAAIAILEEEWVQVIICD 51 (139)
T ss_dssp CEEEESSHHHHHHHHHHSCEEEEEEE
T ss_pred EEEEECCHHHHHHHHHHCCCCEEEEE
T ss_conf 99996549999999983789889963
No 485
>>2gf9_A RAS-related protein RAB-3D; G-protein, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.53A {Homo sapiens} PDB: 3rab_A* (A:)
Probab=32.97 E-value=21 Score=15.93 Aligned_cols=25 Identities=20% Similarity=0.309 Sum_probs=17.2
Q ss_pred CCCCCEEEECCEEECCCCCCHHHHHHHH
Q ss_conf 3889889982300078887489999999
Q gi|254780401|r 41 HAPIPVICVGGFVMGGTGKTPTALAIAK 68 (338)
Q Consensus 41 ~~~~pVI~VGNitvGGtGKTP~v~~l~~ 68 (338)
...+.|+.||+ +|.|||-++..+..
T Consensus 20 ~~~~kivivG~---~~vGKTsli~r~~~ 44 (189)
T 2gf9_A 20 DYMFKLLLIGN---SSVGKTSFLFRYAD 44 (189)
T ss_dssp SEEEEEEEECS---TTSSHHHHHHHHHH
T ss_pred CEEEEEEEECC---CCCCHHHHHHHHHC
T ss_conf 85889999999---99298999999971
No 486
>>2b6h_A ADP-ribosylation factor 5; membrane trafficking, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.76A {Homo sapiens} (A:)
Probab=32.84 E-value=18 Score=16.36 Aligned_cols=22 Identities=23% Similarity=0.359 Sum_probs=15.4
Q ss_pred CCCCCEEEECCEEECCCCCCHHHHH
Q ss_conf 3889889982300078887489999
Q gi|254780401|r 41 HAPIPVICVGGFVMGGTGKTPTALA 65 (338)
Q Consensus 41 ~~~~pVI~VGNitvGGtGKTP~v~~ 65 (338)
...+.|+.||+ +|+|||-++..
T Consensus 27 ~~~~KivivGd---~~VGKTsli~r 48 (192)
T 2b6h_A 27 KKQMRILMVGL---DAAGKTTILYK 48 (192)
T ss_dssp TSCEEEEEEES---TTSSHHHHHHH
T ss_pred CCEEEEEEECC---CCCCHHHHHHH
T ss_conf 87589999999---99888999999
No 487
>>1c1y_A RAS-related protein RAP-1A; GTP-binding proteins, protein-protein complex, effectors; HET: GTP; 1.90A {Homo sapiens} (A:)
Probab=32.81 E-value=24 Score=15.60 Aligned_cols=22 Identities=23% Similarity=0.617 Sum_probs=15.6
Q ss_pred CCEEEECCEEECCCCCCHHHHHHHH
Q ss_conf 9889982300078887489999999
Q gi|254780401|r 44 IPVICVGGFVMGGTGKTPTALAIAK 68 (338)
Q Consensus 44 ~pVI~VGNitvGGtGKTP~v~~l~~ 68 (338)
+.|+.||+ +|+|||-++..+..
T Consensus 4 ~KivlvGd---~~vGKTsLi~r~~~ 25 (167)
T 1c1y_A 4 YKLVVLGS---GGVGKSALTVQFVQ 25 (167)
T ss_dssp EEEEEECS---TTSSHHHHHHHHHH
T ss_pred EEEEEECC---CCCCHHHHHHHHHC
T ss_conf 69999998---99899999999970
No 488
>>1xhf_A DYE resistance, aerobic respiration control protein ARCA; two-component system, gene regulation, transcription factor, anoxic redox control; 2.15A {Escherichia coli} (A:)
Probab=32.80 E-value=31 Score=14.75 Aligned_cols=26 Identities=19% Similarity=0.296 Sum_probs=13.8
Q ss_pred CCCCCCCHHHHHHHHCCCCCCEEEEC
Q ss_conf 63465201225664102457479971
Q gi|254780401|r 116 VTIVTSDRKIGVQMLLQEGVDIIIMD 141 (338)
Q Consensus 116 pv~V~~~R~~~~~~~~~~~~diiIlD 141 (338)
-|..+.+-.+|...+.+..+|+||+|
T Consensus 29 ~v~~a~~~~~al~~l~~~~~dliilD 54 (123)
T 1xhf_A 29 DVFEATDGAEXHQILSEYDINLVIXD 54 (123)
T ss_dssp EEEEESSHHHHHHHHHHSCCSEEEEC
T ss_pred EEEEECCHHHHHHHHHHCCCCHHHHC
T ss_conf 89998986999999983474322200
No 489
>>1umk_A B5R, NADH-cytochrome B5 reductase; flavoprotein, beta barrel, FAD-binding domain, NADH-binding domain, oxidoreductase; HET: FAD; 1.75A {Homo sapiens} (A:147-275)
Probab=32.55 E-value=22 Score=15.84 Aligned_cols=22 Identities=36% Similarity=0.558 Sum_probs=17.6
Q ss_pred EEECCCCCCHHHHHHHHHHHHC
Q ss_conf 0007888748999999998524
Q gi|254780401|r 52 FVMGGTGKTPTALAIAKAVIDK 73 (338)
Q Consensus 52 itvGGtGKTP~v~~l~~~l~~~ 73 (338)
+.+||||=||+.-.+-..+...
T Consensus 5 ~iA~G~GIaP~~s~l~~~~~~~ 26 (129)
T 1umk_A 5 MIAGGTGITPMLQVIRAIMKDP 26 (129)
T ss_dssp EEEEGGGHHHHHHHHHHHHTCT
T ss_pred EEECCCCCCHHHHHHHHHHHCC
T ss_conf 9973730686899999998756
No 490
>3cf2_A P97VCP IN COMPLEX WITH ADPAMP-Pnp {Mus musculus} (A:)
Probab=32.54 E-value=15 Score=17.02 Aligned_cols=30 Identities=30% Similarity=0.219 Sum_probs=20.9
Q ss_pred EEEECCEEECCCCCCHHHHHHHHHHHHCCCCEEEEE
Q ss_conf 899823000788874899999999852473159876
Q gi|254780401|r 46 VICVGGFVMGGTGKTPTALAIAKAVIDKNLKPGFLS 81 (338)
Q Consensus 46 VI~VGNitvGGtGKTP~v~~l~~~l~~~g~~~~ils 81 (338)
++..|.- |||||-++.++|+.+. .....++
T Consensus 241 ill~Gpp---GtGKT~la~~ia~~~~---~~~~~i~ 270 (806)
T 3cf2_A 241 ILLYGPP---GTGKTLIARAVANETG---AFFFLIN 270 (806)
T ss_dssp EEEECCT---TSCHHHHHHHHHTTTT---CEEEEEE
T ss_pred CCCCCCC---CCCCHHHHHHHHHHHH---HHHHHHC
T ss_conf 2134422---2330234577666654---4322202
No 491
>>2ged_A SR-beta, signal recognition particle receptor beta subunit; protein transport, G protein, proline isomerization, circular permutation; 2.20A {Saccharomyces cerevisiae} (A:)
Probab=32.53 E-value=31 Score=14.72 Aligned_cols=28 Identities=18% Similarity=0.145 Sum_probs=17.8
Q ss_pred CCCCCCCCEEEECCEEECCCCCCHHHHHHHH
Q ss_conf 6433889889982300078887489999999
Q gi|254780401|r 38 QRLHAPIPVICVGGFVMGGTGKTPTALAIAK 68 (338)
Q Consensus 38 ~~~~~~~pVI~VGNitvGGtGKTP~v~~l~~ 68 (338)
....-...|+.||. .|+|||-+.-.|++
T Consensus 43 ~~~~~~~ki~ivG~---~~vGKTsLl~~l~~ 70 (193)
T 2ged_A 43 GGGSYQPSIIIAGP---QNSGKTSLLTLLTT 70 (193)
T ss_dssp ---CCCCEEEEECC---TTSSHHHHHHHHHH
T ss_pred CCCCCCCEEEEECC---CCCCHHHHHHHHHC
T ss_conf 88765628999898---99974889999863
No 492
>>2v6g_A Progesterone 5-beta-reductase; tyrosine-dependent oxidoreductase, oxidoreductase, SDR, cardenolides, cardiac glycosides; HET: NAP; 2.3A {Digitalis lanata} PDB: 2v6f_A* (A:)
Probab=32.39 E-value=28 Score=15.11 Aligned_cols=32 Identities=16% Similarity=0.029 Sum_probs=25.8
Q ss_pred EEECCCCCCHHHHHHHHHHHHCCCCEEEEEECCC
Q ss_conf 0007888748999999998524731598760457
Q gi|254780401|r 52 FVMGGTGKTPTALAIAKAVIDKNLKPGFLSRGYG 85 (338)
Q Consensus 52 itvGGtGKTP~v~~l~~~l~~~g~~~~ilsRGYg 85 (338)
+.+|||| =+=.+|++.|.++|+.+.++.|.-.
T Consensus 5 lVTGatG--fiG~~lv~~Ll~~g~~v~~~~~~~~ 36 (364)
T 2v6g_A 5 LIVGVTG--IIGNSLAEILPLADTPGGPWKVYGV 36 (364)
T ss_dssp EEETTTS--HHHHHHHHHTTSTTCTTCSEEEEEE
T ss_pred EEECCCC--HHHHHHHHHHHHCCCCCEEEEEEEE
T ss_conf 9968998--8999999999868997316899996
No 493
>>2cnd_A NADH-dependent nitrate reductase; nitrate assimilating enzyme, oxidoreductase, nitrogenous acceptor; HET: FAD; 2.50A {Zea mays} (A:117-270)
Probab=32.31 E-value=23 Score=15.69 Aligned_cols=35 Identities=23% Similarity=0.275 Sum_probs=23.4
Q ss_pred CCCEEEECCEEECCCCCCHHHHHHHHHHHHCC--CCEEEEE
Q ss_conf 89889982300078887489999999985247--3159876
Q gi|254780401|r 43 PIPVICVGGFVMGGTGKTPTALAIAKAVIDKN--LKPGFLS 81 (338)
Q Consensus 43 ~~pVI~VGNitvGGtGKTP~v~~l~~~l~~~g--~~~~ils 81 (338)
.-|+|.| +||||=||+.-.|-..++... .....+-
T Consensus 20 ~~~ivlI----agGtGIaP~~s~l~~~~~~~~~~~~~v~l~ 56 (154)
T 2cnd_A 20 ARRLAMI----CGGSGITPMYQIIQAVLRDQPEDHTEMHLV 56 (154)
T ss_dssp CSEEEEE----EEGGGHHHHHHHHHHHHHTTTTCCCEEEEE
T ss_pred CCEEEEE----ECCCCHHHHHHHHHHHHHHCCCCCCEEEEE
T ss_conf 8538999----657335339999999997387777349999
No 494
>>3kcn_A Adenylate cyclase homolog; SGX, PSI 2, structural genomics, protein structure initiative; 2.45A {Rhodopirellula baltica} (A:)
Probab=32.26 E-value=25 Score=15.47 Aligned_cols=50 Identities=6% Similarity=0.129 Sum_probs=29.5
Q ss_pred HHCCCCCCCCCHHHHHHHHCCCC-CCEEEEC------CCC----CCCCCCCEEEEEEECCC
Q ss_conf 20576346520122566410245-7479971------832----23441230699996184
Q gi|254780401|r 112 ARRAVTIVTSDRKIGVQMLLQEG-VDIIIMD------DGF----HSADLQADFSLIVVNSH 161 (338)
Q Consensus 112 a~~~pv~V~~~R~~~~~~~~~~~-~diiIlD------DGf----Qh~~l~rdl~Ivl~d~~ 161 (338)
.+.+.|..+.+-.+|...+.+.. +|+|++| ||+ +=++..++.-++++.+.
T Consensus 25 ~~~~~v~~a~~~~~Al~~l~~~~~~divllD~~mP~~dG~~ll~~ir~~~p~~pvI~lT~~ 85 (151)
T 3kcn_A 25 SFDFEVTTCESGPEALACIKKSDPFSVIXVDXRXPGXEGTEVIQKARLISPNSVYLXLTGN 85 (151)
T ss_dssp TTTSEEEEESSHHHHHHHHHHSCCCSEEEEESCCSSSCHHHHHHHHHHHCSSCEEEEEECG
T ss_pred HCCCEEEEECCHHHHHHHHHHCCCCCEEEEECCCCCCCHHHHHHHHHHHCCCCEEEEEECC
T ss_conf 8799899976789999999856997099984899898759999999981999879997347
No 495
>>2rex_B RHO-related GTP-binding protein RHO6; complex, structural genomics consortium, SGC, GTPase, GNP, plexin, effector domain, alternative splicing; HET: GNP; 2.30A {Homo sapiens} PDB: 2cls_A* (B:)
Probab=32.21 E-value=26 Score=15.32 Aligned_cols=26 Identities=31% Similarity=0.335 Sum_probs=16.7
Q ss_pred CCCCCCEEEECCEEECCCCCCHHHHHHHH
Q ss_conf 33889889982300078887489999999
Q gi|254780401|r 40 LHAPIPVICVGGFVMGGTGKTPTALAIAK 68 (338)
Q Consensus 40 ~~~~~pVI~VGNitvGGtGKTP~v~~l~~ 68 (338)
....+.|+.||+ +|+|||-++..+++
T Consensus 7 ~~~~~KivivG~---~~vGKTsLi~~~~~ 32 (197)
T 2rex_B 7 VVARCKLVLVGD---VQCGKTAMLQVLAK 32 (197)
T ss_dssp ---CEEEEEECS---TTSSHHHHHHHHHH
T ss_pred CCEEEEEEEECC---CCCCHHHHHHHHHH
T ss_conf 842789999999---99798899999974
No 496
>>2v1x_A ATP-dependent DNA helicase Q1; DNA strand annealing, mismatch repair, nucleotide-binding, DNA-binding, polymorphism, nuclear protein, ATPase; HET: ADP; 2.00A {Homo sapiens} (A:236-373)
Probab=32.11 E-value=32 Score=14.67 Aligned_cols=60 Identities=17% Similarity=0.289 Sum_probs=45.5
Q ss_pred CCCCEEEEEE-CCCCHHHHHHHHHHHCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCC-EEEECHH
Q ss_conf 1686389874-155357899988740100001221433234898999999997564798-7998546
Q gi|254780401|r 220 LSGKKVLAFS-GIADTEKFFTTVRQLGALIEQCYSFGDHAHLSDKKIAYLLDQAQQKGL-ILVTTAK 284 (338)
Q Consensus 220 l~~k~v~afs-GIa~P~~F~~~L~~~g~~i~~~~~fpDHh~ys~~dl~~i~~~a~~~~~-~iiTTEK 284 (338)
..++++++|| .+..-+.+.+.|++.|+.+. .=|...+..+-+...+..++... .+|+|.-
T Consensus 30 ~~~~~~lIf~~t~~~~~~l~~~L~~~~~~~~-----~~~~~~~~~~r~~~~~~f~~~~~~~lv~t~~ 91 (138)
T 2v1x_A 30 YKGQSGIIYCFSQKDSEQVTVSLQNLGIHAG-----AYHANLEPEDKTTVHRKWSANEIQVVVATVA 91 (138)
T ss_dssp TTTCEEEEECSSHHHHHHHHHHHHHTTCCEE-----EECTTSCHHHHHHHHHHHHTTSSSEEEECTT
T ss_pred CCCCCCEEEEEEEEHHHHHHHHHHHCCCEEE-----ECCCCCHHHHHHHHHHHHHCCCCCEEEEECH
T ss_conf 3577616997542214567788764186033-----1047522989999999997799768998450
No 497
>>1ny5_A Transcriptional regulator (NTRC family); AAA+ ATPase, sigma54 activator, bacterial transcription, dimer; HET: ADP; 2.40A {Aquifex aeolicus} (A:1-139)
Probab=32.08 E-value=32 Score=14.67 Aligned_cols=29 Identities=10% Similarity=0.164 Sum_probs=15.6
Q ss_pred CCCCCCCHHHHHHHHCCCCCCEEEECCCC
Q ss_conf 63465201225664102457479971832
Q gi|254780401|r 116 VTIVTSDRKIGVQMLLQEGVDIIIMDDGF 144 (338)
Q Consensus 116 pv~V~~~R~~~~~~~~~~~~diiIlDDGf 144 (338)
-|.+..+=.+|...+.+..+|+||+|-.+
T Consensus 26 ~v~~a~~~~~al~~l~~~~~d~iilD~~l 54 (139)
T 1ny5_A 26 KVESAERGKEAYKLLSEKHFNVVLLDLLL 54 (139)
T ss_dssp EEEEESSHHHHHHHHHHSCCSEEEEESBC
T ss_pred EEEEECCHHHHHHHHHCCCCCEEEEECCC
T ss_conf 99998999999999861899899982999
No 498
>>3bor_A Human initiation factor 4A-II; translation initiation, DEAD BOX, structural genomics, helicase, alternative splicing, ATP-binding; 1.85A {Homo sapiens} PDB: 2g9n_A* (A:)
Probab=32.01 E-value=28 Score=15.02 Aligned_cols=40 Identities=15% Similarity=0.193 Sum_probs=16.6
Q ss_pred CCCHHHHHHHHCCCCCCEEEECCC-----CCCC-CCCCEEEEEEEC
Q ss_conf 520122566410245747997183-----2234-412306999961
Q gi|254780401|r 120 TSDRKIGVQMLLQEGVDIIIMDDG-----FHSA-DLQADFSLIVVN 159 (338)
Q Consensus 120 ~~~R~~~~~~~~~~~~diiIlDDG-----fQh~-~l~rdl~Ivl~d 159 (338)
+.+...-...+.+.++|+||.--| ++.. ---+++..+++|
T Consensus 135 g~~~~~~~~~~~~~~~~iii~Tpgrl~~~~~~~~~~l~~l~~lVlD 180 (237)
T 3bor_A 135 GTNVRNEMQKLQAEAPHIVVGTPGRVFDMLNRRYLSPKWIKMFVLD 180 (237)
T ss_dssp -------------CCCSEEEECHHHHHHHHHTTSSCSTTCCEEEEE
T ss_pred CCCCHHHHHHHHCCCCCEEEECCHHHHHHHHCCCCCCCCCEEEEEE
T ss_conf 0441478898750687189958557777876088655675699860
No 499
>>2z2i_A PTH, peptidyl-tRNA hydrolase; protein synthesis; 1.98A {Mycobacterium tuberculosis H37RV} PDB: 2z2j_A 2z2k_A 2jrc_A (A:)
Probab=32.00 E-value=12 Score=17.61 Aligned_cols=25 Identities=16% Similarity=-0.059 Sum_probs=11.6
Q ss_pred CCCCCCCCCCCCHHHHHCCHHHHHHHH
Q ss_conf 433566553761365210025566514
Q gi|254780401|r 161 HRGLGNGLVFPAGPLRVPLSRQLSYVD 187 (338)
Q Consensus 161 ~~~~gn~~llPaGpLREp~~~~l~rad 187 (338)
+.|+|.=++=|.|--+- +++|+...
T Consensus 98 dlp~Gkirlk~~Gs~gG--HNGlkSI~ 122 (191)
T 2z2i_A 98 DLEFGRIRLKIGGGEGG--HNGLRSVV 122 (191)
T ss_dssp TSCTTCEEEEESCCCTT--CHHHHHHH
T ss_pred CCCCCEEEEECCCCCCC--HHHHHHHH
T ss_conf 78775189836997765--16899999
No 500
>>3jvi_A Protein tyrosine phosphatase; niaid, ssgcid, seattle structural genomics center for infectious disease, parasitic protozoan; 1.80A {Entamoeba histolytica hm-1} PDB: 3js5_A* 3ily_A 3ido_A* (A:)
Probab=31.98 E-value=32 Score=14.66 Aligned_cols=48 Identities=21% Similarity=0.153 Sum_probs=0.0
Q ss_pred CCCCCCCEEEECCEEECCCCCCHHHHHHHHHH---HHCCCCEEEEEECCCCCCCCC
Q ss_conf 43388988998230007888748999999998---524731598760457877775
Q gi|254780401|r 39 RLHAPIPVICVGGFVMGGTGKTPTALAIAKAV---IDKNLKPGFLSRGYGRKSRIS 91 (338)
Q Consensus 39 ~~~~~~pVI~VGNitvGGtGKTP~v~~l~~~l---~~~g~~~~ilsRGYg~~~~~~ 91 (338)
+.+..|-.||.||+ +..||+..|.+.+ +..+-++-|-|.|-.....+.
T Consensus 2 ~~~~~iLFVC~~N~-----cRSpmAEal~~~~~~~~~~~~~~~v~SAG~~~~~~~~ 52 (161)
T 3jvi_A 2 PGSMKLLFVCLGNI-----CRSPAAEAVMKKVIQNHHLTEKYICDSAGTCSYHEGQ 52 (161)
T ss_dssp --CEEEEEEESSSS-----SHHHHHHHHHHHHHHHTTCGGGEEEEEEESCCTTTTC
T ss_pred CCCEEEEEECCCCH-----HHHHHHHHHHHHHHHHCCCCCCEEEEECCCCCCCCCC
T ss_conf 99759999879848-----7999999999999986799986589942203455787
Done!