HHsearch results for GI: 254780401 and protein with PDBid: 1ls1_A
>1ls1_A Signal recognition particle protein; FFH, SRP54, SRP, GTPase, ultrahigh resolution, protein transport; 1.10A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 1jpn_B* 1jpj_A* 1ry1_U* 2j45_A* 1o87_A* 2c04_A* 2j46_A* 1rj9_B* 2c03_A* 2j7p_A* 1okk_A* 2cnw_A* 1ng1_A* 3ng1_A 1ffh_A 2ng1_A*
Probab=96.07 E-value=0.015 Score=37.18 Aligned_cols=157 Identities=22% Similarity=0.268 Sum_probs=85.1
Q ss_pred ECCCCCCHHHHHHHHHHHHCCCCEEEEEECCCCCCCCCEEEECCCCCHHHHCCHHHHH-HH--CCCCCCCCCHHH-----
Q ss_conf 0788874899999999852473159876045787777558714567887704212332-20--576346520122-----
Q gi|254780401|r 54 MGGTGKTPTALAIAKAVIDKNLKPGFLSRGYGRKSRISFRVDLEKHSAYDVGDEPLLL-AR--RAVTIVTSDRKI----- 125 (338)
Q Consensus 54 vGGtGKTP~v~~l~~~l~~~g~~~~ilsRGYg~~~~~~~~v~~~~~~~~~vGDEp~ll-a~--~~pv~V~~~R~~----- 125 (338)
+.|+|||-++.-||.+++.+|++|++++= ++.+-.+-|.+.. +. ..|++++.+-..
T Consensus 106 ~~G~GKTTt~aKLA~~~~~~g~kv~li~~----------------Dt~R~~A~eQL~~~a~~~~v~~~~~~~~~~~~~~~ 169 (295)
T 1ls1_A 106 LQGSGKTTTAAKLALYYKGKGRRPLLVAA----------------DTQRPAAREQLRLLGEKVGVPVLEVMDGESPESIR 169 (295)
T ss_dssp CTTTTHHHHHHHHHHHHHHTTCCEEEEEC----------------CSSCHHHHHHHHHHHHHHTCCEEECCTTCCHHHHH
T ss_pred CCCCCCEEHHHHHHHHHHHCCCEEEEEEC----------------CCCCCCHHHHHHHHHHHCCCEEEEECCCCCHHHHH
T ss_conf 78898521199999999877984457741----------------45553389999999986496389506887668999
Q ss_pred --HHHHHCCCCCCEEEECCC-CCCCC-------------CCCEEEEEEECCCCCCCCCCCCCCHHHHHC--CHHHHHHHH
Q ss_conf --566410245747997183-22344-------------123069999618433566553761365210--025566514
Q gi|254780401|r 126 --GVQMLLQEGVDIIIMDDG-FHSAD-------------LQADFSLIVVNSHRGLGNGLVFPAGPLRVP--LSRQLSYVD 187 (338)
Q Consensus 126 --~~~~~~~~~~diiIlDDG-fQh~~-------------l~rdl~Ivl~d~~~~~gn~~llPaGpLREp--~~~~l~rad 187 (338)
+...+...+.|+|+.|=+ ..|+. ..++.-++|+|+..+.. -+++- ...+ -..|
T Consensus 170 ~~~~~~~~~~~~d~vlIDTaGr~~~~~~l~~el~~i~~~~~p~~~~LVl~a~~~~~--------~~~~~~~f~~~-~~~~ 240 (295)
T 1ls1_A 170 RRVEEKARLEARDLILVDTAGRLQIDEPLMGELARLKEVLGPDEVLLVLDAMTGQE--------ALSVARAFDEK-VGVT 240 (295)
T ss_dssp HHHHHHHHHHTCCEEEEECCCCSSCCHHHHHHHHHHHHHHCCSEEEEEEEGGGTHH--------HHHHHHHHHHH-TCCC
T ss_pred HHHHHHHHHCCCCEEEEECCCCCHHHHHHHHHHHHHHHHHCCCEEEEEECCCCCCC--------HHHHHHHHHHH-CCCC
T ss_conf 99999987528866999566630206889999999998519855899853888730--------69999999863-5997
Q ss_pred HHHHCCCCHHH-----HH--HHCCCCHHHHHHHHCCCCCCCCCEEEEEECCCCHHHHHHHHHHHC
Q ss_conf 54420441245-----77--631350111222201321116863898741553578999887401
Q gi|254780401|r 188 AILYVGNKKNV-----IS--SIKNKSVYFAKLKPRLTFDLSGKKVLAFSGIADTEKFFTTVRQLG 245 (338)
Q Consensus 188 ~vi~~~~~~~~-----~~--~~~~~~i~~~~~~~~~~~~l~~k~v~afsGIa~P~~F~~~L~~~g 245 (338)
.+|+|+-+... ++ ...+.|+.+...-. .+.|+ . .++|++|.+.|-.+|
T Consensus 241 ~~I~TKlDet~~~G~~ls~~~~~~~Pi~~~~~Gq-~~~Dl-----~----~~~~~~~~~~llG~g 295 (295)
T 1ls1_A 241 GLVLTKLDGDARGGAALSARHVTGKPIYFAGVSE-KPEGL-----E----PFYPERLAGRILGMG 295 (295)
T ss_dssp EEEEECGGGCSSCHHHHHHHHHHCCCEEEEC-------CC-----E----ECCHHHHHHHHTTCC
T ss_pred EEEEEEECCCCCCCHHHHHHHHHCCCEEEECCCC-CHHHC-----C----CCCHHHHHHHHHCCC
T ss_conf 5999701378863099999999898989982897-85636-----5----289999999973899