HHsearch results for GI: 254780401 and protein with PDBid: 1rj9_A

>1rj9_A FTSY, signal recognition protein; SRP-GTPase domain, heterodimer, nucleotide twinning, protein-protein complex, protein transport; HET: GCP; 1.90A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 2q9c_A* 2q9b_A* 2q9a_A* 1okk_D* 2iyl_D* 2cnw_D* 2j7p_D*
Probab=95.01  E-value=0.024  Score=35.77  Aligned_cols=99  Identities=18%  Similarity=0.221  Sum_probs=58.2

Q ss_pred             EEEECCEEECCCCCCHHHHHHHHHHHHCCCCEEEEEECCCCCCCCCEEEECCCCCHHHHCCHHHH-HHH--CCCCCCCCC
Q ss_conf             89982300078887489999999985247315987604578777755871456788770421233-220--576346520
Q gi|254780401|r   46 VICVGGFVMGGTGKTPTALAIAKAVIDKNLKPGFLSRGYGRKSRISFRVDLEKHSAYDVGDEPLL-LAR--RAVTIVTSD  122 (338)
Q Consensus        46 VI~VGNitvGGtGKTP~v~~l~~~l~~~g~~~~ilsRGYg~~~~~~~~v~~~~~~~~~vGDEp~l-la~--~~pv~V~~~  122 (338)
                      +.-||-   =|+|||-++.-||.+++.+|.++++++=-                +.+-.|-|.+- +++  .+|+++..+
T Consensus       105 i~lvG~---~G~GKTTt~aKlA~~~~~~~~kv~li~~D----------------t~R~ga~eQL~~~a~~~~v~~~~~~~  165 (304)
T 1rj9_A          105 VLVVGV---NGVGKTTTIAKLGRYYQNLGKKVMFCAGD----------------TFRAAGGTQLSEWGKRLSIPVIQGPE  165 (304)
T ss_dssp             EEEECS---TTSSHHHHHHHHHHHHHTTTCCEEEECCC----------------CSSTTTTHHHHHHHHHHTCCEECCCT
T ss_pred             EEEECC---CCCCCCHHHHHHHHHHHHHCCCCEEEECC----------------CCCCHHHHHHHHHCCCCCCEEEECCC
T ss_conf             995246---67774118999999986511540034214----------------20000678999856556850796688


Q ss_pred             HH---HHHHH----HCCCCCCEEEECCC-CCCCCC-------------------CCEEEEEEECCCCC
Q ss_conf             12---25664----10245747997183-223441-------------------23069999618433
Q gi|254780401|r  123 RK---IGVQM----LLQEGVDIIIMDDG-FHSADL-------------------QADFSLIVVNSHRG  163 (338)
Q Consensus       123 R~---~~~~~----~~~~~~diiIlDDG-fQh~~l-------------------~rdl~Ivl~d~~~~  163 (338)
                      -.   ..++.    +...+.|+|+.|-+ ..|..-                   .++-.++|+|+..+
T Consensus       166 ~~d~~~~~~~~~~~~~~~~~d~iliDTaGr~~~~~~l~~el~~~~~~~~~~~~~~p~e~~LVl~a~~~  233 (304)
T 1rj9_A          166 GTDSAALAYDAVQAMKARGYDLLFVDTAGRLHTKHNLMEELKKVKRAIAKADPEEPKEVWLVLDAVTG  233 (304)
T ss_dssp             TCCHHHHHHHHHHHHHHHTCSEEEECCCCCCTTCHHHHHHHHHHHHHHHHHCTTCCSEEEEEEETTBC
T ss_pred             CCHHHHHHHHHHHHHHHCCCCEEEECCHHCCCCHHHHHHHHHHHHHHHHHCCCCCCCEEEEEEECCCC
T ss_conf             72078778999999998699989975043031037788777888877653267898558999611038