HHsearch results for GI: 254780401 and protein with PDBid: 1rj9_A
>1rj9_A FTSY, signal recognition protein; SRP-GTPase domain, heterodimer, nucleotide twinning, protein-protein complex, protein transport; HET: GCP; 1.90A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 2q9c_A* 2q9b_A* 2q9a_A* 1okk_D* 2iyl_D* 2cnw_D* 2j7p_D*
Probab=95.01 E-value=0.024 Score=35.77 Aligned_cols=99 Identities=18% Similarity=0.221 Sum_probs=58.2
Q ss_pred EEEECCEEECCCCCCHHHHHHHHHHHHCCCCEEEEEECCCCCCCCCEEEECCCCCHHHHCCHHHH-HHH--CCCCCCCCC
Q ss_conf 89982300078887489999999985247315987604578777755871456788770421233-220--576346520
Q gi|254780401|r 46 VICVGGFVMGGTGKTPTALAIAKAVIDKNLKPGFLSRGYGRKSRISFRVDLEKHSAYDVGDEPLL-LAR--RAVTIVTSD 122 (338)
Q Consensus 46 VI~VGNitvGGtGKTP~v~~l~~~l~~~g~~~~ilsRGYg~~~~~~~~v~~~~~~~~~vGDEp~l-la~--~~pv~V~~~ 122 (338)
+.-||- =|+|||-++.-||.+++.+|.++++++=- +.+-.|-|.+- +++ .+|+++..+
T Consensus 105 i~lvG~---~G~GKTTt~aKlA~~~~~~~~kv~li~~D----------------t~R~ga~eQL~~~a~~~~v~~~~~~~ 165 (304)
T 1rj9_A 105 VLVVGV---NGVGKTTTIAKLGRYYQNLGKKVMFCAGD----------------TFRAAGGTQLSEWGKRLSIPVIQGPE 165 (304)
T ss_dssp EEEECS---TTSSHHHHHHHHHHHHHTTTCCEEEECCC----------------CSSTTTTHHHHHHHHHHTCCEECCCT
T ss_pred EEEECC---CCCCCCHHHHHHHHHHHHHCCCCEEEECC----------------CCCCHHHHHHHHHCCCCCCEEEECCC
T ss_conf 995246---67774118999999986511540034214----------------20000678999856556850796688
Q ss_pred HH---HHHHH----HCCCCCCEEEECCC-CCCCCC-------------------CCEEEEEEECCCCC
Q ss_conf 12---25664----10245747997183-223441-------------------23069999618433
Q gi|254780401|r 123 RK---IGVQM----LLQEGVDIIIMDDG-FHSADL-------------------QADFSLIVVNSHRG 163 (338)
Q Consensus 123 R~---~~~~~----~~~~~~diiIlDDG-fQh~~l-------------------~rdl~Ivl~d~~~~ 163 (338)
-. ..++. +...+.|+|+.|-+ ..|..- .++-.++|+|+..+
T Consensus 166 ~~d~~~~~~~~~~~~~~~~~d~iliDTaGr~~~~~~l~~el~~~~~~~~~~~~~~p~e~~LVl~a~~~ 233 (304)
T 1rj9_A 166 GTDSAALAYDAVQAMKARGYDLLFVDTAGRLHTKHNLMEELKKVKRAIAKADPEEPKEVWLVLDAVTG 233 (304)
T ss_dssp TCCHHHHHHHHHHHHHHHTCSEEEECCCCCCTTCHHHHHHHHHHHHHHHHHCTTCCSEEEEEEETTBC
T ss_pred CCHHHHHHHHHHHHHHHCCCCEEEECCHHCCCCHHHHHHHHHHHHHHHHHCCCCCCCEEEEEEECCCC
T ss_conf 72078778999999998699989975043031037788777888877653267898558999611038