HHsearch results for GI: 254780401 and protein with PDBid: 2j28_9
>2j28_9 Signal recognition particle 54; ribosome, protein/RNA complex; 8.0A {Escherichia coli}
Probab=94.22 E-value=0.01 Score=38.40 Aligned_cols=204 Identities=16% Similarity=0.153 Sum_probs=108.3
Q ss_pred EEEECCEEECCCCCCHHHHHHHHHHHHC-CCCEEEEEE-CCCCCCCCCEEEECCCCCHHHHCCHHH-HHHHC--CCCCC-
Q ss_conf 8998230007888748999999998524-731598760-457877775587145678877042123-32205--76346-
Q gi|254780401|r 46 VICVGGFVMGGTGKTPTALAIAKAVIDK-NLKPGFLSR-GYGRKSRISFRVDLEKHSAYDVGDEPL-LLARR--AVTIV- 119 (338)
Q Consensus 46 VI~VGNitvGGtGKTP~v~~l~~~l~~~-g~~~~ilsR-GYg~~~~~~~~v~~~~~~~~~vGDEp~-lla~~--~pv~V- 119 (338)
+..|| +=|+|||-++.-||.+++.+ |++|++++= -|+ ..| =|-+ .+++. +|++.
T Consensus 102 Im~VG---vnGsGKTTTiaKLA~~~k~k~~kkVllva~DTfR-------------~AA----~eQLk~~a~~~~vpv~~~ 161 (430)
T 2j28_9 102 VLMAG---LQGAGKTTSVGKLGKFLREKHKKKVLVVSADVYR-------------PAA----IKQLETLAEQVGVDFFPS 161 (430)
T ss_dssp EEEEC---SSSSSSTTTHHHHHHHHHTSSSCCCCBCCCCCSS-------------SCS----HHHHHHHHHHTTCCCCCC
T ss_pred EEEEC---CCCCCCCCHHHHHHHHHHHHCCCEEEEEECCCCC-------------CCH----HHHHHHHHHHCCCCCCCC
T ss_conf 99975---6899855429999999999479858999557555-------------158----999999986047774156
Q ss_pred --CCCHHH----HHHHHCCCCCCEEEECCCC-CC-------------CCCCCEEEEEEECCCCCCCCCCCCCCHHHHHCC
Q ss_conf --520122----5664102457479971832-23-------------441230699996184335665537613652100
Q gi|254780401|r 120 --TSDRKI----GVQMLLQEGVDIIIMDDGF-HS-------------ADLQADFSLIVVNSHRGLGNGLVFPAGPLRVPL 179 (338)
Q Consensus 120 --~~~R~~----~~~~~~~~~~diiIlDDGf-Qh-------------~~l~rdl~Ivl~d~~~~~gn~~llPaGpLREp~ 179 (338)
+.|-.. |+..+...++|+||.|-+= .| +.+.+|..++|+|+.-+. .-+--+=-.
T Consensus 162 ~~~~dp~~va~~ai~~ak~~~~DvviiDTAGR~~~d~~lm~El~~i~~~~~p~e~lLV~da~~gq--~~~~qa~~f---- 235 (430)
T 2j28_9 162 DVGQKPVDIVNAALKEAKLKFYDVLLVDTAGRLHVDEAMMDEIKQVHASINPVETLFVVDAMTGQ--DAANTAKAF---- 235 (430)
T ss_dssp SSCCCTTHHHHHHHHHHHHTTCSCEEEEECCCCSSHHHHHHHHHHHHHHHCCSEEEEEEETTTGG--GGHHHHHHH----
T ss_pred CCCCCHHHHHHHHHHHHHHCCCCEEEEECCCCHHHHHHHHHHHHHHHHHCCCCEEEEEEECCCCH--HHHHHHHHH----
T ss_conf 65568789999999999986999899946763021599999999999856985799984255675--679999999----
Q ss_pred HHHHHHHHHHHHCCCCHH-----H--HHHHCCCCHHHHH-HH-HCCCCCCCCCE-EEEEECCCCHHHHHHHHHHHC-CCC
Q ss_conf 255665145442044124-----5--7763135011122-22-01321116863-898741553578999887401-000
Q gi|254780401|r 180 SRQLSYVDAILYVGNKKN-----V--ISSIKNKSVYFAK-LK-PRLTFDLSGKK-VLAFSGIADTEKFFTTVRQLG-ALI 248 (338)
Q Consensus 180 ~~~l~rad~vi~~~~~~~-----~--~~~~~~~~i~~~~-~~-~~~~~~l~~k~-v~afsGIa~P~~F~~~L~~~g-~~i 248 (338)
..++ ..+-+|+|+-+.. . .....+.|+.|.. .+ ......+...+ +-.+-|.||...+.+..++.- .+-
T Consensus 236 ~~~~-~~~gvIlTKlDg~akgG~alsi~~~~~~PI~fig~GE~i~Dle~F~p~~f~~rilgmGDi~~L~e~~~~~~~~~~ 314 (430)
T 2j28_9 236 NEAL-PLTGVVLTKVDGDARGGAALSIRHITGKPIKFLGVGEKTEALEPFHPDRIASRILGMGDVLSLIEDIESKVDRAQ 314 (430)
T ss_dssp HTTC-SSCEEEEECSSSCSCCTHHHHHHHTTTCCBCCCCCSSSTTCCCCCCGGGCCCCCSSCCCCCHHHHHHHHHTTTCC
T ss_pred HHHC-CCCEEEEEECCCCCCCCHHHHHHHHHCCCEEEEECCCCHHHCHHCCHHHHHHHHHCCCCHHHHHHHHHHHHHHHH
T ss_conf 8635-886058850256777307855999979696999648853311121899999998176538999999986423667
Q ss_pred CCC--CCCCCCCCCCHHHHHHHHHHHHHCC
Q ss_conf 012--2143323489899999999756479
Q gi|254780401|r 249 EQC--YSFGDHAHLSDKKIAYLLDQAQQKG 276 (338)
Q Consensus 249 ~~~--~~fpDHh~ys~~dl~~i~~~a~~~~ 276 (338)
... ........|+-.|+..=.+..++.+
T Consensus 315 ~~~~~~k~~~~~~f~l~D~~~q~~~~~kmG 344 (430)
T 2j28_9 315 AEKLASKLKKGDGFDLNDFLEQLRQMKNMG 344 (430)
T ss_dssp CCCSSSSSCCCCCSCSCCCHHHHHCCTTTT
T ss_pred HHHHHHHHHCCCCCCHHHHHHHHHHHHHCC
T ss_conf 789999986069866999999999998227