HHsearch results for GI: 254780401 and protein with PDBid: 2v3c_C
>2v3c_C SRP54, signal recognition 54 kDa protein; nucleotide-binding, signal recognition particle, GTP-binding, RNA-binding; 2.50A {Methanocaldococcus jannaschii}
Probab=95.49 E-value=0.019 Score=36.52 Aligned_cols=168 Identities=19% Similarity=0.249 Sum_probs=84.4
Q ss_pred CCEEEECCEEECCCCCCHHHHHHHHHHHHCCCCEEEEEECCCCCCCCCEEEECCCCCHHHHCCHHHHHHHC--CCCCCCC
Q ss_conf 98899823000788874899999999852473159876045787777558714567887704212332205--7634652
Q gi|254780401|r 44 IPVICVGGFVMGGTGKTPTALAIAKAVIDKNLKPGFLSRGYGRKSRISFRVDLEKHSAYDVGDEPLLLARR--AVTIVTS 121 (338)
Q Consensus 44 ~pVI~VGNitvGGtGKTP~v~~l~~~l~~~g~~~~ilsRGYg~~~~~~~~v~~~~~~~~~vGDEp~lla~~--~pv~V~~ 121 (338)
.-|..|| +-|+|||.++.-||.+++++|++|++++=- +-...| -|.-..++.. +|++...
T Consensus 100 ~VIllvG---l~GsGKTTT~aKLA~~l~~~g~kv~lvaaD------------t~R~aA---~eQL~~~a~~~~v~~~~~~ 161 (432)
T 2v3c_C 100 NVILLVG---IQGSGKTTTAAKLARYIQKRGLKPALIAAD------------TYRPAA---YEQLKQLAEKIHVPIYGDE 161 (432)
T ss_dssp CCEEEEC---CSSSSTTHHHHHHHHHHHHHHCCEEEECCS------------CCCTTG---GGSSHHHHHHSSCCEECCS
T ss_pred EEEEEEC---CCCCCCHHHHHHHHHHHHHCCCCCEEEEEC------------CCHHHH---HHHHHHHHHCCCCCEECCC
T ss_conf 6999857---987762148999999999779974244210------------336889---9999999723797577786
Q ss_pred C----HHHHHHHHC--CCCCCEEEECCCC-C-------------CCCCCCEEEEEEECCCCCCCCCCCCCCHHHHHCCHH
Q ss_conf 0----122566410--2457479971832-2-------------344123069999618433566553761365210025
Q gi|254780401|r 122 D----RKIGVQMLL--QEGVDIIIMDDGF-H-------------SADLQADFSLIVVNSHRGLGNGLVFPAGPLRVPLSR 181 (338)
Q Consensus 122 ~----R~~~~~~~~--~~~~diiIlDDGf-Q-------------h~~l~rdl~Ivl~d~~~~~gn~~llPaGpLREp~~~ 181 (338)
. -...+..+. ..+.|+||.|-+= . ...+.++..++|+|+.-+ ..-+--+ +.+..
T Consensus 162 ~~~~~p~~i~~~a~~~~~~~DvviIDTAGRl~~d~~Lm~EL~~i~~~~~P~e~llV~Da~~G--q~a~~~a----~~F~~ 235 (432)
T 2v3c_C 162 TRTKSPVDIVKEGMEKFKKADVLIIDTAGRHKEEKGLLEEMKQIKEITNPDEIILVIDGTIG--QQAGIQA----KAFKE 235 (432)
T ss_dssp SSCCSSSTTHHHHHHTTSSCSEEEEECCCSCSSHHHHHHHHHHTTSSSCCSEEEEEEEGGGG--GGHHHHH----HHHHT
T ss_pred CCCCCHHHHHHHHHHHHHCCCEEEEECCCCCCCHHHHHHHHHHHHHHCCCCEEEEECCCCCC--HHHHHHH----HHHHH
T ss_conf 66540899999999996269989986666551207799999999876297503210212111--4689989----99999
Q ss_pred HHHHHHHHHHCCCCHHH-------HHHHCCCCHHHHHHHHCCCCCCCCCEEEEEECCCCHHHHHHHHHHHC
Q ss_conf 56651454420441245-------77631350111222201321116863898741553578999887401
Q gi|254780401|r 182 QLSYVDAILYVGNKKNV-------ISSIKNKSVYFAKLKPRLTFDLSGKKVLAFSGIADTEKFFTTVRQLG 245 (338)
Q Consensus 182 ~l~rad~vi~~~~~~~~-------~~~~~~~~i~~~~~~~~~~~~l~~k~v~afsGIa~P~~F~~~L~~~g 245 (338)
++...+-+|+|+-+... .....+.|+.|...= +...|+. . =+|++|.+.|-.+|
T Consensus 236 ~~~~i~giIlTKlDg~akgG~aLSi~~~t~~PI~fiG~G-Ek~~DLe-----~----F~p~~~~~riLGmG 296 (432)
T 2v3c_C 236 AVGEIGSIIVTKLDGSAKGGGALSAVAETKAPIKFIGIG-EGIDDLE-----P----FDPKKFISRLLGMG 296 (432)
T ss_dssp TSCSCEEEEEECSSSCSTTHHHHHHHHHSSCCEEEECCS-SSSSSCC-----B----CCHHHHHHHHTCSS
T ss_pred HHCCCCCEEEEEECCCCCCHHHHHHHHHHCCCEEEEECC-CCCCCCC-----C----CCHHHHHHHHCCCC
T ss_conf 852355257741036775249989999978994898517-9855687-----7----69899999872896