HHsearch results for GI: 254780401 and protein with PDBid: 3dm5_A

>3dm5_A SRP54, signal recognition 54 kDa protein; protein-RNA, signal recognition particle, SRP-GTPase, protein targeting, cytoplasm, GTP-binding; HET: GDP; 2.51A {Pyrococcus furiosus}
Probab=96.55  E-value=0.0063  Score=39.90  Aligned_cols=201  Identities=17%  Similarity=0.199  Sum_probs=106.5

Q ss_pred             ECCCCCCHHHHHHHHHHHHCCCCEEEEEECCCCCCCCCEEEECCCCCHHHHCCHHHHHHHC--CCCCC---CCCHH----
Q ss_conf             0788874899999999852473159876045787777558714567887704212332205--76346---52012----
Q gi|254780401|r   54 MGGTGKTPTALAIAKAVIDKNLKPGFLSRGYGRKSRISFRVDLEKHSAYDVGDEPLLLARR--AVTIV---TSDRK----  124 (338)
Q Consensus        54 vGGtGKTP~v~~l~~~l~~~g~~~~ilsRGYg~~~~~~~~v~~~~~~~~~vGDEp~lla~~--~pv~V---~~~R~----  124 (338)
                      +=|+|||-++.-||.+++++|++|++++=-            +-...|.   |.-..++..  +|++-   +.|-.    
T Consensus       108 ~~G~GKTTT~aKLA~~~~~~g~kv~lva~D------------t~R~aA~---eQL~~~a~~~~v~v~~~~~~~dp~~i~~  172 (443)
T 3dm5_A          108 IQGSGKTTTVAKLARYFQKRGYKVGVVCSD------------TWRPGAY---HQLRQLLDRYHIEVFGNPQEKDAIKLAK  172 (443)
T ss_dssp             CTTSSHHHHHHHHHHHHHTTTCCEEEEECC------------CSSTHHH---HHHHHHHGGGTCEEECCTTCCCHHHHHH
T ss_pred             CCCCCCCCHHHHHHHHHHHCCCCEEEEECC------------CCCHHHH---HHHHHHHHCCCCCEECCCCCCCHHHHHH
T ss_conf             788972327999999999769942465314------------5576699---9999985124565006764336678999


Q ss_pred             HHHHHHCCCCCCEEEECCCCCC--------------CCCCCEEEEEEECCCCCCCCCCCCCCHHHHHCCHHHHHHHHHHH
Q ss_conf             2566410245747997183223--------------44123069999618433566553761365210025566514544
Q gi|254780401|r  125 IGVQMLLQEGVDIIIMDDGFHS--------------ADLQADFSLIVVNSHRGLGNGLVFPAGPLRVPLSRQLSYVDAIL  190 (338)
Q Consensus       125 ~~~~~~~~~~~diiIlDDGfQh--------------~~l~rdl~Ivl~d~~~~~gn~~llPaGpLREp~~~~l~rad~vi  190 (338)
                      +|..++...++|+||.|-+=.|              ....++-.++|+|+.-+-  .-+-=+    +....++ ..+-+|
T Consensus       173 ~a~~~a~~~~~D~viIDTAGR~~~d~~lm~EL~~i~~~~~p~e~lLVlda~~gq--~a~~~a----~~f~~~~-~i~giI  245 (443)
T 3dm5_A          173 EGVDYFKSKGVDIIIVDTAGRHKEDKALIEEMKQISNVIHPHEVILVIDGTIGQ--QAYNQA----LAFKEAT-PIGSII  245 (443)
T ss_dssp             HHHHHHHHTTCSEEEEECCCCSSCCHHHHHHHHHHHHHHCCSEEEEEEEGGGGG--GHHHHH----HHHHHSC-TTEEEE
T ss_pred             HHHHHHHHCCCCEEEEECCCCCHHHHHHHHHHHHHHCCCCCCEEEEEECCCCCH--HHHHHH----HHHHHHC-CCCCEE
T ss_conf             999999866999899878875365899999999752146982478741143466--789999----9855315-888357


Q ss_pred             HCCCCHH-----H--HHHHCCCCHHHHHH-H-HCCCCCCCCCE-EEEEECCCCHHHHHHHHHHHCC-CCCCCC--CCCCC
Q ss_conf             2044124-----5--77631350111222-2-01321116863-8987415535789998874010-000122--14332
Q gi|254780401|r  191 YVGNKKN-----V--ISSIKNKSVYFAKL-K-PRLTFDLSGKK-VLAFSGIADTEKFFTTVRQLGA-LIEQCY--SFGDH  257 (338)
Q Consensus       191 ~~~~~~~-----~--~~~~~~~~i~~~~~-~-~~~~~~l~~k~-v~afsGIa~P~~F~~~L~~~g~-~i~~~~--~fpDH  257 (338)
                      +|+-+..     .  .....+.|+.|... + .....++...+ +-.+-|.||...+.+..++.-- +-....  .---+
T Consensus       246 lTKlD~~akgG~als~~~~~~~PI~fig~GE~~~dle~F~p~~~~~rilGmGDi~~L~ek~~~~~~~~~~~~~~~~~~~~  325 (443)
T 3dm5_A          246 VTKLDGSAKGGGALSAVAATGAPIKFIGTGEKIDDIEPFDPPRFVSRLLGLGDIQGLLEKFKELEKEVEIKEEDIERFLR  325 (443)
T ss_dssp             EECCSSCSSHHHHHHHHHTTCCCEEEEECSSSTTCEEECCHHHHHHHHTTTTCHHHHHHHHHHHHTTHHHHHHHHHHHHT
T ss_pred             EECCCCCCCCHHHHHHHHHHCCCEEEEECCCCCCCCCCCCHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_conf             73356787634897799997949799820788424552699999999828973799999999987777778999999864


Q ss_pred             CCCCHHHHHHHHHHHHHCC
Q ss_conf             3489899999999756479
Q gi|254780401|r  258 AHLSDKKIAYLLDQAQQKG  276 (338)
Q Consensus       258 h~ys~~dl~~i~~~a~~~~  276 (338)
                      -.|+-.|+..=.+..++.+
T Consensus       326 g~f~l~D~~~q~~~~~kmG  344 (443)
T 3dm5_A          326 GKFTLKDMYAQLEAMRKMG  344 (443)
T ss_dssp             TCCCHHHHHHHHHHHHTTC
T ss_pred             CCCCHHHHHHHHHHHHHCC
T ss_conf             9967999999999998147