HHsearch results for GI: 254780401 and protein with PDBid: 3dm5_A
>3dm5_A SRP54, signal recognition 54 kDa protein; protein-RNA, signal recognition particle, SRP-GTPase, protein targeting, cytoplasm, GTP-binding; HET: GDP; 2.51A {Pyrococcus furiosus}
Probab=96.55 E-value=0.0063 Score=39.90 Aligned_cols=201 Identities=17% Similarity=0.199 Sum_probs=106.5
Q ss_pred ECCCCCCHHHHHHHHHHHHCCCCEEEEEECCCCCCCCCEEEECCCCCHHHHCCHHHHHHHC--CCCCC---CCCHH----
Q ss_conf 0788874899999999852473159876045787777558714567887704212332205--76346---52012----
Q gi|254780401|r 54 MGGTGKTPTALAIAKAVIDKNLKPGFLSRGYGRKSRISFRVDLEKHSAYDVGDEPLLLARR--AVTIV---TSDRK---- 124 (338)
Q Consensus 54 vGGtGKTP~v~~l~~~l~~~g~~~~ilsRGYg~~~~~~~~v~~~~~~~~~vGDEp~lla~~--~pv~V---~~~R~---- 124 (338)
+=|+|||-++.-||.+++++|++|++++=- +-...|. |.-..++.. +|++- +.|-.
T Consensus 108 ~~G~GKTTT~aKLA~~~~~~g~kv~lva~D------------t~R~aA~---eQL~~~a~~~~v~v~~~~~~~dp~~i~~ 172 (443)
T 3dm5_A 108 IQGSGKTTTVAKLARYFQKRGYKVGVVCSD------------TWRPGAY---HQLRQLLDRYHIEVFGNPQEKDAIKLAK 172 (443)
T ss_dssp CTTSSHHHHHHHHHHHHHTTTCCEEEEECC------------CSSTHHH---HHHHHHHGGGTCEEECCTTCCCHHHHHH
T ss_pred CCCCCCCCHHHHHHHHHHHCCCCEEEEECC------------CCCHHHH---HHHHHHHHCCCCCEECCCCCCCHHHHHH
T ss_conf 788972327999999999769942465314------------5576699---9999985124565006764336678999
Q ss_pred HHHHHHCCCCCCEEEECCCCCC--------------CCCCCEEEEEEECCCCCCCCCCCCCCHHHHHCCHHHHHHHHHHH
Q ss_conf 2566410245747997183223--------------44123069999618433566553761365210025566514544
Q gi|254780401|r 125 IGVQMLLQEGVDIIIMDDGFHS--------------ADLQADFSLIVVNSHRGLGNGLVFPAGPLRVPLSRQLSYVDAIL 190 (338)
Q Consensus 125 ~~~~~~~~~~~diiIlDDGfQh--------------~~l~rdl~Ivl~d~~~~~gn~~llPaGpLREp~~~~l~rad~vi 190 (338)
+|..++...++|+||.|-+=.| ....++-.++|+|+.-+- .-+-=+ +....++ ..+-+|
T Consensus 173 ~a~~~a~~~~~D~viIDTAGR~~~d~~lm~EL~~i~~~~~p~e~lLVlda~~gq--~a~~~a----~~f~~~~-~i~giI 245 (443)
T 3dm5_A 173 EGVDYFKSKGVDIIIVDTAGRHKEDKALIEEMKQISNVIHPHEVILVIDGTIGQ--QAYNQA----LAFKEAT-PIGSII 245 (443)
T ss_dssp HHHHHHHHTTCSEEEEECCCCSSCCHHHHHHHHHHHHHHCCSEEEEEEEGGGGG--GHHHHH----HHHHHSC-TTEEEE
T ss_pred HHHHHHHHCCCCEEEEECCCCCHHHHHHHHHHHHHHCCCCCCEEEEEECCCCCH--HHHHHH----HHHHHHC-CCCCEE
T ss_conf 999999866999899878875365899999999752146982478741143466--789999----9855315-888357
Q ss_pred HCCCCHH-----H--HHHHCCCCHHHHHH-H-HCCCCCCCCCE-EEEEECCCCHHHHHHHHHHHCC-CCCCCC--CCCCC
Q ss_conf 2044124-----5--77631350111222-2-01321116863-8987415535789998874010-000122--14332
Q gi|254780401|r 191 YVGNKKN-----V--ISSIKNKSVYFAKL-K-PRLTFDLSGKK-VLAFSGIADTEKFFTTVRQLGA-LIEQCY--SFGDH 257 (338)
Q Consensus 191 ~~~~~~~-----~--~~~~~~~~i~~~~~-~-~~~~~~l~~k~-v~afsGIa~P~~F~~~L~~~g~-~i~~~~--~fpDH 257 (338)
+|+-+.. . .....+.|+.|... + .....++...+ +-.+-|.||...+.+..++.-- +-.... .---+
T Consensus 246 lTKlD~~akgG~als~~~~~~~PI~fig~GE~~~dle~F~p~~~~~rilGmGDi~~L~ek~~~~~~~~~~~~~~~~~~~~ 325 (443)
T 3dm5_A 246 VTKLDGSAKGGGALSAVAATGAPIKFIGTGEKIDDIEPFDPPRFVSRLLGLGDIQGLLEKFKELEKEVEIKEEDIERFLR 325 (443)
T ss_dssp EECCSSCSSHHHHHHHHHTTCCCEEEEECSSSTTCEEECCHHHHHHHHTTTTCHHHHHHHHHHHHTTHHHHHHHHHHHHT
T ss_pred EECCCCCCCCHHHHHHHHHHCCCEEEEECCCCCCCCCCCCHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_conf 73356787634897799997949799820788424552699999999828973799999999987777778999999864
Q ss_pred CCCCHHHHHHHHHHHHHCC
Q ss_conf 3489899999999756479
Q gi|254780401|r 258 AHLSDKKIAYLLDQAQQKG 276 (338)
Q Consensus 258 h~ys~~dl~~i~~~a~~~~ 276 (338)
-.|+-.|+..=.+..++.+
T Consensus 326 g~f~l~D~~~q~~~~~kmG 344 (443)
T 3dm5_A 326 GKFTLKDMYAQLEAMRKMG 344 (443)
T ss_dssp TCCCHHHHHHHHHHHHTTC
T ss_pred CCCCHHHHHHHHHHHHHCC
T ss_conf 9967999999999998147