Query gi|254780401|ref|YP_003064814.1| tetraacyldisaccharide 4'-kinase [Candidatus Liberibacter asiaticus str. psy62]
Match_columns 338
No_of_seqs 164 out of 1985
Neff 6.7
Searched_HMMs 23785
Date Mon May 30 10:09:53 2011
Command /home/congqian_1/programs/hhpred/hhsearch -i 254780401.hhm -d /home/congqian_1/database/pdb/pdb70.hhm
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1np6_A Molybdopterin-guanine d 97.3 0.00073 3.1E-08 46.6 7.1 105 44-159 6-121 (174)
2 3dm5_A SRP54, signal recogniti 96.6 0.0063 2.6E-07 39.9 6.7 201 54-276 108-344 (443)
3 3kl4_A SRP54, signal recogniti 96.5 0.0051 2.2E-07 40.5 6.2 200 54-276 105-344 (433)
4 2qy9_A Cell division protein F 96.3 0.0087 3.6E-07 38.9 6.2 100 46-164 102-231 (309)
5 2ffh_A Protein (FFH); SRP54, s 96.3 0.011 4.5E-07 38.3 6.6 197 54-276 106-336 (425)
6 1j8m_F SRP54, signal recogniti 96.3 0.0051 2.1E-07 40.6 4.9 79 46-143 101-189 (297)
7 1xjc_A MOBB protein homolog; s 96.2 0.012 5E-07 38.0 6.6 36 45-82 5-40 (169)
8 1jbw_A Folylpolyglutamate synt 96.2 0.037 1.5E-06 34.5 9.1 110 33-147 29-149 (428)
9 2j37_W Signal recognition part 96.1 0.0074 3.1E-07 39.4 5.1 205 46-276 104-343 (504)
10 1ls1_A Signal recognition part 96.1 0.015 6.4E-07 37.2 6.5 157 54-245 106-295 (295)
11 2og2_A Putative signal recogni 96.1 0.0055 2.3E-07 40.3 4.3 98 47-163 161-289 (359)
12 3e70_C DPA, signal recognition 95.9 0.013 5.7E-07 37.6 5.7 100 46-163 132-254 (328)
13 1zu4_A FTSY; GTPase, signal re 95.7 0.011 4.4E-07 38.3 4.4 99 46-163 108-240 (320)
14 1vma_A Cell division protein F 95.7 0.01 4.4E-07 38.3 4.3 79 46-143 107-195 (306)
15 3b9q_A Chloroplast SRP recepto 95.6 0.012 5.1E-07 37.9 4.3 99 46-163 103-232 (302)
16 2v3c_C SRP54, signal recogniti 95.5 0.019 7.9E-07 36.5 5.1 168 44-245 100-296 (432)
17 1g3q_A MIND ATPase, cell divis 95.4 0.012 5.3E-07 37.8 4.0 37 45-82 3-39 (237)
18 2oze_A ORF delta'; para, walke 95.3 0.016 6.6E-07 37.1 4.1 39 42-81 34-72 (298)
19 3cwq_A Para family chromosome 95.2 0.015 6.5E-07 37.1 3.8 34 46-81 2-35 (209)
20 1o5z_A Folylpolyglutamate synt 95.1 0.13 5.3E-06 30.6 8.4 58 33-95 42-99 (442)
21 1w78_A FOLC bifunctional prote 95.1 0.13 5.5E-06 30.5 8.4 114 29-147 35-152 (422)
22 3ez2_A Plasmid partition prote 95.1 0.032 1.4E-06 34.8 5.2 38 42-80 106-149 (398)
23 1rj9_A FTSY, signal recognitio 95.0 0.024 1E-06 35.8 4.4 99 46-163 105-233 (304)
24 3fkq_A NTRC-like two-domain pr 94.9 0.025 1.1E-06 35.6 4.1 42 40-82 139-180 (373)
25 3iqw_A Tail-anchored protein t 94.7 0.019 7.8E-07 36.6 3.1 38 44-83 16-53 (334)
26 2z83_A Helicase/nucleoside tri 94.6 0.052 2.2E-06 33.4 5.4 53 222-283 190-244 (459)
27 3ez9_A Para; DNA binding, wing 94.6 0.021 8.9E-07 36.2 3.3 40 41-81 108-153 (403)
28 2px0_A Flagellar biosynthesis 94.6 0.078 3.3E-06 32.1 6.1 79 46-143 107-191 (296)
29 1hyq_A MIND, cell division inh 94.6 0.027 1.2E-06 35.4 3.8 38 44-82 2-39 (263)
30 2woo_A ATPase GET3; tail-ancho 94.5 0.023 9.6E-07 35.9 3.3 37 44-82 19-55 (329)
31 3nrs_A Dihydrofolate:folylpoly 94.5 0.3 1.3E-05 27.9 9.5 142 30-179 39-187 (437)
32 2ph1_A Nucleotide-binding prot 94.3 0.024 1E-06 35.8 3.0 36 46-82 20-55 (262)
33 2j28_9 Signal recognition part 94.2 0.01 4.3E-07 38.4 1.0 204 46-276 102-344 (430)
34 1ihu_A Arsenical pump-driving 94.2 0.029 1.2E-06 35.2 3.2 38 44-83 8-45 (589)
35 3kjh_A CO dehydrogenase/acetyl 94.1 0.021 9E-07 36.1 2.5 36 47-84 3-38 (254)
36 2afh_E Nitrogenase iron protei 94.1 0.027 1.1E-06 35.4 3.0 28 54-81 10-37 (289)
37 3la6_A Tyrosine-protein kinase 93.8 0.077 3.2E-06 32.2 4.8 63 19-82 66-129 (286)
38 1yks_A Genome polyprotein [con 93.8 0.055 2.3E-06 33.2 4.0 54 222-283 177-231 (440)
39 3end_A Light-independent proto 93.6 0.059 2.5E-06 33.0 4.0 38 43-82 40-77 (307)
40 2www_A Methylmalonic aciduria 93.6 0.33 1.4E-05 27.7 7.8 139 41-200 71-228 (349)
41 1cp2_A CP2, nitrogenase iron p 93.5 0.064 2.7E-06 32.7 3.9 29 54-82 9-37 (269)
42 2i4i_A ATP-dependent RNA helic 93.5 0.097 4.1E-06 31.4 4.9 59 221-284 275-335 (417)
43 3k9g_A PF-32 protein; ssgcid, 93.4 0.065 2.7E-06 32.7 3.9 37 45-83 28-64 (267)
44 1nij_A Hypothetical protein YJ 93.4 0.056 2.4E-06 33.2 3.5 137 43-196 3-162 (318)
45 3io3_A DEHA2D07832P; chaperone 93.3 0.05 2.1E-06 33.5 3.1 37 45-83 19-57 (348)
46 1wcv_1 SOJ, segregation protei 93.0 0.032 1.4E-06 34.9 1.8 37 44-81 6-42 (257)
47 2woj_A ATPase GET3; tail-ancho 92.9 0.059 2.5E-06 33.0 3.1 38 44-83 18-57 (354)
48 3igf_A ALL4481 protein; two-do 92.9 0.028 1.2E-06 35.3 1.3 28 54-81 10-37 (374)
49 2eyq_A TRCF, transcription-rep 92.8 0.57 2.4E-05 26.0 12.5 212 46-284 627-873 (1151)
50 3e1s_A Exodeoxyribonuclease V, 92.8 0.55 2.3E-05 26.1 7.9 27 55-81 213-239 (574)
51 3cio_A ETK, tyrosine-protein k 92.5 0.16 6.7E-06 29.9 4.8 40 41-81 101-140 (299)
52 2v6i_A RNA helicase; membrane, 92.4 0.15 6.5E-06 30.0 4.7 54 222-283 171-225 (431)
53 2pbr_A DTMP kinase, thymidylat 92.0 0.14 5.9E-06 30.3 4.0 33 46-81 2-35 (195)
54 1ihu_A Arsenical pump-driving 91.9 0.099 4.2E-06 31.4 3.2 32 54-85 335-366 (589)
55 2p67_A LAO/AO transport system 91.8 0.21 8.9E-06 29.1 4.8 133 47-198 57-208 (341)
56 3eiq_A Eukaryotic initiation f 91.7 0.5 2.1E-05 26.4 6.6 58 221-283 279-338 (414)
57 2wv9_A Flavivirin protease NS2 91.7 0.22 9.1E-06 29.0 4.7 53 222-283 410-464 (673)
58 2qm8_A GTPase/ATPase; G protei 91.0 0.23 9.5E-06 28.8 4.2 131 46-196 55-205 (337)
59 3bfv_A CAPA1, CAPB2, membrane 90.9 0.39 1.6E-05 27.2 5.3 39 42-81 80-118 (271)
60 3ea0_A ATPase, para family; al 90.8 0.19 8E-06 29.4 3.7 38 44-82 4-42 (245)
61 3p32_A Probable GTPase RV1496/ 90.7 0.39 1.7E-05 27.1 5.2 133 47-199 80-232 (355)
62 1a7j_A Phosphoribulokinase; tr 90.0 0.3 1.3E-05 28.0 4.1 38 43-82 4-41 (290)
63 1yrb_A ATP(GTP)binding protein 89.5 0.44 1.8E-05 26.8 4.6 35 43-81 13-48 (262)
64 1byi_A Dethiobiotin synthase; 89.3 0.22 9E-06 29.0 2.9 26 55-80 11-36 (224)
65 2jlq_A Serine protease subunit 89.0 0.21 8.7E-06 29.1 2.7 53 222-283 188-242 (451)
66 1nn5_A Similar to deoxythymidy 87.9 0.54 2.3E-05 26.2 4.2 35 46-83 11-46 (215)
67 2qgz_A Helicase loader, putati 87.7 0.49 2.1E-05 26.5 3.9 25 56-80 162-187 (308)
68 1gtv_A TMK, thymidylate kinase 87.4 0.25 1E-05 28.6 2.2 34 46-82 3-36 (214)
69 1gm5_A RECG; helicase, replica 87.2 0.85 3.6E-05 24.7 4.9 100 55-168 398-506 (780)
70 4tmk_A Protein (thymidylate ki 86.7 0.5 2.1E-05 26.4 3.5 34 50-86 10-43 (213)
71 1kht_A Adenylate kinase; phosp 86.6 0.31 1.3E-05 27.9 2.4 29 55-83 12-40 (192)
72 3lv8_A DTMP kinase, thymidylat 86.3 0.63 2.6E-05 25.7 3.8 35 46-83 30-64 (236)
73 2vos_A Folylpolyglutamate synt 85.9 1.7 7E-05 22.7 5.8 58 32-94 53-110 (487)
74 2w58_A DNAI, primosome compone 85.0 0.56 2.4E-05 26.0 3.1 35 44-81 55-89 (202)
75 1e8c_A UDP-N-acetylmuramoylala 83.8 2.3 9.9E-05 21.6 6.4 41 37-81 101-141 (498)
76 2db3_A ATP-dependent RNA helic 83.7 2.4 1E-04 21.6 9.1 58 222-284 300-359 (434)
77 2z0h_A DTMP kinase, thymidylat 83.6 0.7 3E-05 25.3 3.1 28 55-82 9-36 (197)
78 3fgn_A Dethiobiotin synthetase 83.3 0.67 2.8E-05 25.5 2.8 27 55-81 36-62 (251)
79 2ccj_A DTMP kinase, thymidylat 83.1 0.99 4.2E-05 24.3 3.7 31 47-81 5-36 (205)
80 2j0s_A ATP-dependent RNA helic 82.9 2.5 0.00011 21.4 10.0 60 220-284 274-335 (410)
81 3kqn_A Serine protease/ntpase/ 82.5 0.79 3.3E-05 25.0 3.0 33 219-251 170-203 (437)
82 2whx_A Serine protease/ntpase/ 82.3 0.88 3.7E-05 24.7 3.1 53 222-283 355-409 (618)
83 1bif_A 6-phosphofructo-2-kinas 81.8 0.51 2.1E-05 26.4 1.8 42 43-87 39-81 (469)
84 2qmo_A Dethiobiotin synthetase 81.7 0.86 3.6E-05 24.7 2.9 26 55-80 11-36 (220)
85 2yvu_A Probable adenylyl-sulfa 81.6 0.85 3.6E-05 24.8 2.8 32 53-84 20-51 (186)
86 2wwf_A Thymidilate kinase, put 81.4 0.96 4E-05 24.4 3.1 35 44-81 11-45 (212)
87 2gk6_A Regulator of nonsense t 81.3 1.1 4.6E-05 24.0 3.3 30 52-81 199-231 (624)
88 1rz3_A Hypothetical protein rb 80.7 1.1 4.7E-05 23.9 3.2 40 44-85 21-61 (201)
89 2wtz_A UDP-N-acetylmuramoyl-L- 80.6 3 0.00013 20.8 6.0 41 40-84 142-182 (535)
90 3a4m_A L-seryl-tRNA(SEC) kinas 79.9 1 4.3E-05 24.2 2.8 34 46-82 7-40 (260)
91 3c8u_A Fructokinase; YP_612366 79.8 1.5 6.2E-05 23.1 3.6 38 44-83 22-59 (208)
92 3eag_A UDP-N-acetylmuramate:L- 79.6 1.6 6.7E-05 22.8 3.7 20 54-77 12-31 (326)
93 1nks_A Adenylate kinase; therm 79.5 0.99 4.2E-05 24.3 2.6 28 55-82 10-37 (194)
94 1odf_A YGR205W, hypothetical 3 78.7 3.5 0.00015 20.4 6.2 36 44-81 30-69 (290)
95 1hv8_A Putative ATP-dependent 78.6 3.5 0.00015 20.4 6.5 59 221-284 237-297 (367)
96 1f0k_A MURG, UDP-N-acetylgluco 77.7 1.6 6.5E-05 22.9 3.2 33 53-85 12-45 (364)
97 1l8q_A Chromosomal replication 77.3 1.6 6.5E-05 22.9 3.1 34 45-81 39-72 (324)
98 3i6i_A Putative leucoanthocyan 76.6 3.4 0.00014 20.5 4.6 33 52-86 14-46 (346)
99 3bgw_A DNAB-like replicative h 76.5 1.7 7.2E-05 22.6 3.1 32 50-81 197-232 (444)
100 2axn_A 6-phosphofructo-2-kinas 75.7 1.4 5.7E-05 23.3 2.4 40 46-88 38-78 (520)
101 3fro_A GLGA glycogen synthase; 75.6 1.8 7.6E-05 22.4 3.0 33 53-87 16-48 (439)
102 2pez_A Bifunctional 3'-phospho 75.4 1.7 7.1E-05 22.6 2.8 29 55-83 14-42 (179)
103 1sq5_A Pantothenate kinase; P- 75.2 4.3 0.00018 19.8 8.3 163 19-198 47-227 (308)
104 1cr0_A DNA primase/helicase; R 75.0 2.6 0.00011 21.4 3.7 29 54-82 43-72 (296)
105 1s2m_A Putative ATP-dependent 73.9 4.6 0.00019 19.5 8.0 59 221-284 257-317 (400)
106 2gks_A Bifunctional SAT/APS ki 73.6 2 8.4E-05 22.1 2.9 11 237-247 392-402 (546)
107 1y1l_A Arsenate reductase (ARS 72.3 5 0.00021 19.3 4.6 32 45-84 3-34 (124)
108 3dqp_A Oxidoreductase YLBE; al 72.1 3 0.00013 20.8 3.5 31 52-84 4-34 (219)
109 3ld9_A DTMP kinase, thymidylat 72.1 2.1 9E-05 21.9 2.7 39 45-86 23-62 (223)
110 1osn_A Thymidine kinase, VZV-T 72.1 3.2 0.00013 20.7 3.6 33 46-81 15-47 (341)
111 2npi_A Protein CLP1; CLP1-PCF1 71.9 4.3 0.00018 19.7 4.2 34 46-82 141-175 (460)
112 3h2s_A Putative NADH-flavin re 71.9 2.7 0.00011 21.2 3.2 30 52-83 4-33 (224)
113 2oap_1 GSPE-2, type II secreti 71.4 5.2 0.00022 19.2 4.6 25 55-80 269-293 (511)
114 1j6u_A UDP-N-acetylmuramate-al 71.0 4.5 0.00019 19.6 4.2 40 44-87 114-153 (469)
115 3bh0_A DNAB-like replicative h 71.0 2.7 0.00011 21.2 3.0 32 50-81 68-103 (315)
116 1gg4_A UDP-N-acetylmuramoylala 70.8 3.1 0.00013 20.8 3.3 40 41-85 97-136 (452)
117 1m8p_A Sulfate adenylyltransfe 70.4 2.2 9.3E-05 21.8 2.5 15 317-331 552-566 (573)
118 1w36_D RECD, exodeoxyribonucle 70.1 2.7 0.00011 21.2 2.9 27 55-81 173-203 (608)
119 3h4t_A Glycosyltransferase GTF 70.1 2.3 9.6E-05 21.7 2.5 32 52-84 5-38 (404)
120 2r6j_A Eugenol synthase 1; phe 70.0 3.3 0.00014 20.6 3.3 30 52-83 15-44 (318)
121 3ew7_A LMO0794 protein; Q8Y8U8 70.0 4.6 0.0002 19.5 4.1 30 52-83 4-33 (221)
122 2is6_A DNA helicase II; hydrol 69.1 4 0.00017 20.0 3.6 34 44-81 23-61 (680)
123 1qyc_A Phenylcoumaran benzylic 68.4 4.7 0.0002 19.5 3.8 31 52-84 8-38 (308)
124 3lk7_A UDP-N-acetylmuramoylala 68.4 5.6 0.00024 18.9 4.2 36 43-82 111-146 (451)
125 2f00_A UDP-N-acetylmuramate--L 68.2 4.7 0.0002 19.5 3.8 38 45-86 120-157 (491)
126 3ice_A Transcription terminati 67.8 3.9 0.00016 20.1 3.3 114 55-186 183-307 (422)
127 3kbq_A Protein TA0487; structu 67.7 6.2 0.00026 18.6 4.4 38 43-80 5-42 (172)
128 2f1r_A Molybdopterin-guanine d 67.7 1.4 6.1E-05 23.1 1.1 31 54-84 10-40 (171)
129 3m2p_A UDP-N-acetylglucosamine 67.6 6.2 0.00026 18.6 5.8 43 52-96 6-48 (311)
130 1tf7_A KAIC; homohexamer, hexa 67.6 3.6 0.00015 20.3 3.1 27 55-81 48-75 (525)
131 2q6t_A DNAB replication FORK h 67.2 4.8 0.0002 19.4 3.7 27 55-81 209-236 (444)
132 3cr8_A Sulfate adenylyltranfer 67.1 2 8.3E-05 22.2 1.7 20 224-243 443-462 (552)
133 3ec2_A DNA replication protein 66.9 2.6 0.00011 21.3 2.3 34 44-80 39-73 (180)
134 1kjn_A MTH0777; hypotethical p 66.8 3.7 0.00016 20.2 3.0 23 59-81 21-43 (157)
135 2p5y_A UDP-glucose 4-epimerase 66.3 5.5 0.00023 19.0 3.8 29 52-82 4-32 (311)
136 1jay_A Coenzyme F420H2:NADP+ o 66.0 5.9 0.00025 18.8 3.9 29 53-83 5-33 (212)
137 2kjq_A DNAA-related protein; s 65.9 5.5 0.00023 19.0 3.8 27 55-81 45-71 (149)
138 1xgk_A Nitrogen metabolite rep 65.8 6.5 0.00027 18.5 4.1 30 52-83 9-38 (352)
139 3foz_A TRNA delta(2)-isopenten 65.6 5.3 0.00022 19.1 3.6 33 42-81 7-40 (316)
140 2wjy_A Regulator of nonsense t 65.5 3.7 0.00016 20.2 2.8 29 53-81 376-407 (800)
141 2xgj_A ATP-dependent RNA helic 65.2 6.9 0.00029 18.3 5.1 27 54-81 109-136 (1010)
142 2qt1_A Nicotinamide riboside k 64.8 5.7 0.00024 18.9 3.7 32 43-81 20-52 (207)
143 3hn7_A UDP-N-acetylmuramate-L- 64.6 4.3 0.00018 19.8 3.0 34 44-81 122-155 (524)
144 2z4s_A Chromosomal replication 64.5 3.5 0.00015 20.4 2.5 15 253-267 350-364 (440)
145 2i3b_A HCR-ntpase, human cance 64.1 3.1 0.00013 20.8 2.2 24 55-78 10-33 (189)
146 1uz5_A MOEA protein, 402AA lon 63.9 7.3 0.00031 18.1 4.4 53 233-289 208-266 (402)
147 2pbq_A Molybdenum cofactor bio 63.5 3.1 0.00013 20.8 2.1 23 221-244 126-148 (178)
148 3b85_A Phosphate starvation-in 63.2 7.3 0.00031 18.1 4.0 35 46-83 25-60 (208)
149 3crm_A TRNA delta(2)-isopenten 63.1 4.5 0.00019 19.6 2.9 31 45-82 6-36 (323)
150 2gas_A Isoflavone reductase; N 63.0 4.9 0.00021 19.4 3.0 33 52-86 6-38 (307)
151 3bos_A Putative DNA replicatio 62.6 5.1 0.00022 19.2 3.1 27 55-81 61-87 (242)
152 1pjr_A PCRA; DNA repair, DNA r 62.5 6.5 0.00027 18.5 3.6 36 43-81 24-63 (724)
153 2qby_A CDC6 homolog 1, cell di 62.3 2.7 0.00011 21.2 1.6 26 45-73 47-72 (386)
154 1p3d_A UDP-N-acetylmuramate--a 61.9 7.3 0.00031 18.1 3.8 37 45-85 119-155 (475)
155 2w0m_A SSO2452; RECA, SSPF, un 61.6 4.8 0.0002 19.4 2.8 27 55-81 32-58 (235)
156 1qyd_A Pinoresinol-lariciresin 61.5 5.4 0.00023 19.1 3.0 32 52-85 8-39 (313)
157 2dr3_A UPF0273 protein PH0284; 61.3 5.6 0.00023 19.0 3.1 28 55-82 32-59 (247)
158 3on3_A Keto/oxoacid ferredoxin 61.1 8.1 0.00034 17.8 6.0 101 54-160 13-117 (183)
159 1jf8_A Arsenate reductase; ptp 60.8 3.3 0.00014 20.6 1.8 35 43-84 5-39 (131)
160 3dhn_A NAD-dependent epimerase 60.4 6.1 0.00026 18.7 3.1 30 52-83 8-37 (227)
161 2vhj_A Ntpase P4, P4; non- hyd 60.3 3.7 0.00016 20.2 2.0 23 50-72 124-149 (331)
162 2qby_B CDC6 homolog 3, cell di 60.0 3.4 0.00014 20.5 1.8 24 46-72 48-71 (384)
163 2i2w_A Phosphoheptose isomeras 59.7 8.6 0.00036 17.6 4.6 24 267-290 149-173 (212)
164 2v54_A DTMP kinase, thymidylat 59.7 2.5 0.0001 21.5 1.0 23 55-77 13-35 (204)
165 3jvv_A Twitching mobility prot 59.7 8.1 0.00034 17.8 3.7 10 280-289 328-337 (356)
166 1rpn_A GDP-mannose 4,6-dehydra 59.7 8.6 0.00036 17.6 4.2 32 52-85 18-49 (335)
167 1via_A Shikimate kinase; struc 59.5 5.8 0.00024 18.8 2.9 25 44-71 5-29 (175)
168 3e8x_A Putative NAD-dependent 59.5 6.5 0.00027 18.5 3.2 30 52-83 25-54 (236)
169 3bor_A Human initiation factor 59.5 5.9 0.00025 18.8 2.9 23 92-114 102-124 (237)
170 2q1w_A Putative nucleotide sug 59.3 8.7 0.00037 17.6 4.6 32 52-85 25-56 (333)
171 3h1t_A Type I site-specific re 59.2 6.3 0.00026 18.6 3.1 22 53-74 205-226 (590)
172 2r6a_A DNAB helicase, replicat 59.2 6.4 0.00027 18.5 3.1 33 50-82 203-240 (454)
173 3h4m_A Proteasome-activating n 59.0 5.2 0.00022 19.2 2.6 35 41-81 49-83 (285)
174 2ocp_A DGK, deoxyguanosine kin 58.9 2.9 0.00012 21.0 1.3 31 44-77 3-33 (241)
175 1nlf_A Regulatory protein REPA 58.5 9 0.00038 17.5 5.9 18 55-72 39-56 (279)
176 1m7g_A Adenylylsulfate kinase; 57.8 4.2 0.00017 19.9 1.9 26 55-80 34-60 (211)
177 2i3d_A AGR_C_3351P, hypothetic 57.5 6.9 0.00029 18.3 3.0 47 42-88 47-94 (249)
178 2am1_A SP protein, UDP-N-acety 57.4 6.2 0.00026 18.6 2.8 34 42-79 98-131 (454)
179 1e9r_A Conjugal transfer prote 57.0 6.5 0.00028 18.5 2.8 27 55-81 62-88 (437)
180 1svm_A Large T antigen; AAA+ f 56.9 3.7 0.00015 20.2 1.5 23 46-71 172-194 (377)
181 1vl0_A DTDP-4-dehydrorhamnose 56.9 9.1 0.00038 17.5 3.5 30 52-83 16-45 (292)
182 1htw_A HI0065; nucleotide-bind 56.5 3.3 0.00014 20.6 1.2 25 46-73 36-60 (158)
183 3gz5_A MUTT/nudix family prote 56.3 8 0.00034 17.9 3.2 44 134-185 24-74 (240)
184 2qzs_A Glycogen synthase; glyc 56.3 3.7 0.00016 20.2 1.5 32 53-86 15-46 (485)
185 1xp8_A RECA protein, recombina 56.2 7 0.00029 18.3 2.9 42 39-80 47-108 (366)
186 1x6v_B Bifunctional 3'-phospho 56.1 7 0.0003 18.2 2.9 27 54-80 60-86 (630)
187 2x5o_A UDP-N-acetylmuramoylala 56.1 8.4 0.00035 17.7 3.3 38 43-85 103-140 (439)
188 1g8l_A Molybdopterin biosynthe 55.9 9.9 0.00041 17.2 4.4 50 235-288 207-262 (411)
189 1rkx_A CDP-glucose-4,6-dehydra 55.8 9.9 0.00042 17.2 4.1 32 52-85 13-44 (357)
190 1db3_A GDP-mannose 4,6-dehydra 55.8 9.9 0.00042 17.2 3.8 29 52-82 5-33 (372)
191 2c29_D Dihydroflavonol 4-reduc 55.6 10 0.00042 17.2 3.9 32 52-85 9-40 (337)
192 2w00_A HSDR, R.ECOR124I; ATP-b 55.0 6.4 0.00027 18.5 2.5 23 53-75 307-329 (1038)
193 3c1o_A Eugenol synthase; pheny 55.0 9.1 0.00038 17.5 3.3 31 52-84 8-38 (321)
194 1zgg_A Putative low molecular 54.9 9.4 0.0004 17.3 3.4 38 44-86 3-41 (150)
195 3tmk_A Thymidylate kinase; pho 54.9 4 0.00017 20.0 1.4 20 55-74 14-33 (216)
196 3oh8_A Nucleoside-diphosphate 54.9 10 0.00043 17.1 4.1 30 53-84 152-181 (516)
197 2v1u_A Cell division control p 54.3 4.6 0.00019 19.5 1.7 25 46-73 47-71 (387)
198 1uj2_A Uridine-cytidine kinase 54.1 7.1 0.0003 18.2 2.6 38 43-82 20-63 (252)
199 2c20_A UDP-glucose 4-epimerase 53.9 11 0.00045 17.0 4.1 31 52-84 5-35 (330)
200 3hv2_A Response regulator/HD d 53.9 11 0.00045 17.0 4.4 26 116-141 40-65 (153)
201 1fnn_A CDC6P, cell division co 53.8 11 0.00045 17.0 5.4 29 42-73 43-71 (389)
202 2p4h_X Vestitone reductase; NA 53.4 10 0.00043 17.1 3.3 31 52-84 5-35 (322)
203 2jeo_A Uridine-cytidine kinase 53.1 8.1 0.00034 17.8 2.8 30 55-84 34-69 (245)
204 2zcu_A Uncharacterized oxidore 52.9 11 0.00046 16.9 4.0 30 52-83 3-34 (286)
205 1q57_A DNA primase/helicase; d 52.5 6.1 0.00025 18.7 2.1 13 266-278 384-396 (503)
206 2wm3_A NMRA-like family domain 52.3 11 0.00047 16.8 3.9 30 52-83 9-39 (299)
207 3cf0_A Transitional endoplasmi 52.3 6.6 0.00028 18.4 2.2 32 43-80 49-80 (301)
208 3exa_A TRNA delta(2)-isopenten 52.2 7.5 0.00031 18.1 2.5 31 44-81 3-33 (322)
209 2jjm_A Glycosyl transferase, g 51.9 5.8 0.00024 18.8 1.9 32 53-86 25-56 (394)
210 2x4g_A Nucleoside-diphosphate- 51.4 12 0.00048 16.7 4.2 31 52-84 17-47 (342)
211 1hqc_A RUVB; extended AAA-ATPa 51.1 12 0.00049 16.7 4.7 32 44-81 39-70 (324)
212 3do6_A Formate--tetrahydrofola 51.1 11 0.00046 16.9 3.2 39 44-82 43-83 (543)
213 2a5y_B CED-4; apoptosis; HET: 51.1 4.7 0.0002 19.5 1.3 47 132-178 241-296 (549)
214 1w5s_A ORC2; CDC6, DNA replica 50.9 12 0.00049 16.7 4.3 19 55-73 61-79 (412)
215 2eyu_A Twitching motility prot 50.8 12 0.0005 16.7 4.5 20 54-73 33-52 (261)
216 2ehv_A Hypothetical protein PH 50.8 9.4 0.00039 17.4 2.8 27 55-81 39-66 (251)
217 1lu9_A Methylene tetrahydromet 50.6 12 0.0005 16.6 4.1 22 61-82 130-151 (287)
218 3cvj_A Putative phosphoheptose 50.5 12 0.0005 16.6 4.0 51 124-176 125-192 (243)
219 2r62_A Cell division protease 50.4 5.4 0.00023 19.1 1.5 23 46-71 47-69 (268)
220 1u2p_A Ptpase, low molecular w 50.3 11 0.00046 16.9 3.1 38 43-85 6-46 (163)
221 1jr3_A DNA polymerase III subu 50.2 5.5 0.00023 19.0 1.5 30 41-73 36-65 (373)
222 3d8b_A Fidgetin-like protein 1 50.0 4.8 0.0002 19.4 1.2 30 46-81 120-149 (357)
223 1hdo_A Biliverdin IX beta redu 49.9 12 0.00051 16.6 4.1 29 53-83 8-36 (206)
224 3bs4_A Uncharacterized protein 49.9 9.1 0.00038 17.4 2.6 27 55-81 30-56 (260)
225 2b69_A UDP-glucuronate decarbo 49.9 12 0.00051 16.5 4.6 34 53-88 32-65 (343)
226 3lrx_A Putative hydrogenase; a 49.6 6.9 0.00029 18.3 2.0 31 45-80 25-55 (158)
227 3ko8_A NAD-dependent epimerase 49.5 12 0.00052 16.5 3.8 31 52-84 4-34 (312)
228 2r2a_A Uncharacterized protein 49.3 5.9 0.00025 18.8 1.6 19 55-73 14-32 (199)
229 1cqx_A Flavohemoprotein; globi 49.3 9.8 0.00041 17.2 2.7 22 222-244 266-288 (403)
230 1vht_A Dephospho-COA kinase; s 49.2 8.6 0.00036 17.6 2.4 25 46-77 6-31 (218)
231 1sxj_E Activator 1 40 kDa subu 49.1 4.6 0.00019 19.5 1.0 25 46-73 39-63 (354)
232 1iy2_A ATP-dependent metallopr 49.1 9.1 0.00038 17.4 2.5 34 42-81 72-105 (278)
233 1sxj_D Activator 1 41 kDa subu 49.1 5.8 0.00025 18.8 1.5 24 46-72 61-84 (353)
234 1sxj_B Activator 1 37 kDa subu 49.0 5.9 0.00025 18.8 1.5 26 46-74 45-70 (323)
235 1a5t_A Delta prime, HOLB; zinc 49.0 5.8 0.00024 18.8 1.5 31 39-72 20-50 (334)
236 1hjs_A Beta-1,4-galactanase; 4 48.9 13 0.00053 16.4 4.4 18 269-286 231-248 (332)
237 2dcl_A Hypothetical UPF0166 pr 48.8 13 0.00053 16.4 3.5 79 60-161 25-112 (127)
238 1f6b_A SAR1; gtpases, N-termin 48.6 6.3 0.00026 18.6 1.6 40 23-66 2-45 (198)
239 2yva_A DNAA initiator-associat 48.4 13 0.00054 16.4 3.2 17 124-140 126-142 (196)
240 3d3q_A TRNA delta(2)-isopenten 48.3 8.8 0.00037 17.6 2.3 29 46-81 9-37 (340)
241 1ixz_A ATP-dependent metallopr 48.1 9.6 0.0004 17.3 2.5 34 42-81 48-81 (254)
242 2wja_A Putative acid phosphata 47.9 13 0.00055 16.3 3.5 36 43-86 28-63 (168)
243 2cdn_A Adenylate kinase; phosp 47.8 11 0.00048 16.7 2.9 24 44-70 21-44 (201)
244 2fb1_A Conserved hypothetical 47.7 12 0.00049 16.7 2.9 37 134-178 15-54 (226)
245 1ofh_A ATP-dependent HSL prote 47.6 6.4 0.00027 18.6 1.5 28 42-72 49-76 (310)
246 1p9o_A Phosphopantothenoylcyst 47.6 6.4 0.00027 18.5 1.6 38 41-83 50-88 (313)
247 2hf9_A Probable hydrogenase ni 47.3 12 0.00049 16.7 2.9 41 41-85 35-76 (226)
248 2iya_A OLEI, oleandomycin glyc 47.1 13 0.00056 16.3 3.9 39 43-84 12-50 (424)
249 3b6e_A Interferon-induced heli 47.1 2.6 0.00011 21.3 -0.5 19 55-73 57-75 (216)
250 3bwd_D RAC-like GTP-binding pr 47.0 9.1 0.00038 17.4 2.3 23 43-68 8-30 (182)
251 2plr_A DTMP kinase, probable t 47.0 10 0.00043 17.1 2.5 29 46-78 6-35 (213)
252 1ulu_A Enoyl-acyl carrier prot 47.0 13 0.00056 16.3 3.8 31 52-82 12-42 (261)
253 3hr8_A Protein RECA; alpha and 47.0 12 0.0005 16.6 2.9 40 41-80 36-95 (356)
254 1fob_A Beta-1,4-galactanase; B 47.0 13 0.00056 16.2 4.4 53 235-287 190-250 (334)
255 3pfi_A Holliday junction ATP-d 46.9 5.8 0.00024 18.9 1.2 25 45-72 57-81 (338)
256 1iqp_A RFCS; clamp loader, ext 46.8 6.7 0.00028 18.4 1.5 19 55-73 55-73 (327)
257 1ycg_A Nitric oxide reductase; 46.7 14 0.00057 16.2 4.9 72 57-144 51-129 (398)
258 2c9o_A RUVB-like 1; hexameric 46.6 6.7 0.00028 18.4 1.5 26 43-71 63-88 (456)
259 2r8r_A Sensor protein; KDPD, P 46.4 14 0.00057 16.2 4.7 26 54-79 14-39 (228)
260 1xww_A Low molecular weight ph 46.4 8.3 0.00035 17.7 2.0 38 44-86 8-48 (157)
261 2atv_A RERG, RAS-like estrogen 46.3 8.4 0.00035 17.7 2.0 27 39-68 24-50 (196)
262 3eie_A Vacuolar protein sortin 46.3 6.9 0.00029 18.3 1.5 27 42-71 50-76 (322)
263 2iw1_A Lipopolysaccharide core 46.3 11 0.00046 16.9 2.6 34 54-89 13-46 (374)
264 2if2_A Dephospho-COA kinase; a 46.3 6.7 0.00028 18.4 1.5 24 47-77 5-28 (204)
265 2jl1_A Triphenylmethane reduct 45.9 14 0.00059 16.1 3.7 30 52-83 4-35 (287)
266 1gwn_A RHO-related GTP-binding 45.8 7.6 0.00032 18.0 1.7 23 42-67 27-49 (205)
267 3aez_A Pantothenate kinase; tr 45.7 14 0.00059 16.1 8.6 41 41-82 86-128 (312)
268 2z1m_A GDP-D-mannose dehydrata 45.7 14 0.00059 16.1 3.8 30 52-83 7-36 (345)
269 3fdi_A Uncharacterized protein 45.6 6.8 0.00029 18.4 1.4 25 44-70 6-30 (201)
270 1p6x_A Thymidine kinase; P-loo 45.5 9.8 0.00041 17.2 2.2 31 46-80 10-40 (334)
271 1orr_A CDP-tyvelose-2-epimeras 45.5 14 0.00059 16.1 3.9 28 52-81 5-32 (347)
272 2qzj_A Two-component response 45.2 14 0.0006 16.1 4.1 26 116-141 30-55 (136)
273 1in4_A RUVB, holliday junction 44.9 7.5 0.00031 18.1 1.6 25 45-72 53-77 (334)
274 1eg7_A Formyltetrahydrofolate 44.8 14 0.00061 16.0 3.2 39 44-82 57-97 (557)
275 2chq_A Replication factor C sm 44.7 7.6 0.00032 18.0 1.6 33 38-74 34-66 (319)
276 1jl3_A Arsenate reductase; alp 44.5 15 0.00061 16.0 3.1 35 44-85 6-40 (139)
277 1sxj_C Activator 1 40 kDa subu 44.4 6 0.00025 18.7 1.0 27 46-75 49-75 (340)
278 2rex_B RHO-related GTP-binding 44.3 8.9 0.00038 17.5 1.9 24 41-67 8-31 (197)
279 1t6n_A Probable ATP-dependent 44.2 15 0.00062 16.0 4.4 95 55-160 60-166 (220)
280 3ber_A Probable ATP-dependent 44.2 15 0.00062 16.0 3.7 22 93-114 116-137 (249)
281 1uf9_A TT1252 protein; P-loop, 44.2 7.5 0.00032 18.0 1.5 27 44-77 7-35 (203)
282 2zr9_A Protein RECA, recombina 44.0 14 0.0006 16.1 2.9 42 39-80 34-95 (349)
283 1lvg_A Guanylate kinase, GMP k 44.0 14 0.00057 16.2 2.8 26 43-71 4-29 (198)
284 2pia_A Phthalate dioxygenase r 44.0 11 0.00044 17.0 2.2 34 52-88 116-149 (321)
285 2xbl_A Phosphoheptose isomeras 43.9 15 0.00063 15.9 4.8 17 124-140 133-149 (198)
286 3iij_A Coilin-interacting nucl 43.8 7.9 0.00033 17.9 1.5 26 42-70 9-35 (180)
287 2a9o_A Response regulator; ess 43.5 15 0.00063 15.9 3.8 26 116-141 27-52 (120)
288 1qsg_A Enoyl-[acyl-carrier-pro 43.5 15 0.00063 15.9 3.7 32 52-83 13-44 (265)
289 1u7z_A Coenzyme A biosynthesis 43.5 15 0.00063 15.9 3.5 34 45-84 24-57 (226)
290 1e2k_A Thymidine kinase; trans 43.4 6.5 0.00027 18.5 1.1 24 48-74 9-32 (331)
291 2pk3_A GDP-6-deoxy-D-LYXO-4-he 43.4 15 0.00064 15.9 6.5 37 52-90 16-52 (321)
292 2fuk_A XC6422 protein; A/B hyd 43.3 15 0.00064 15.9 4.4 43 46-88 41-84 (220)
293 1u94_A RECA protein, recombina 43.2 15 0.00062 15.9 2.9 43 39-81 36-98 (356)
294 3a00_A Guanylate kinase, GMP k 43.2 13 0.00054 16.4 2.5 37 44-83 2-39 (186)
295 2rhm_A Putative kinase; ZP_007 43.2 8.2 0.00034 17.8 1.5 22 46-70 8-29 (193)
296 2p65_A Hypothetical protein PF 43.2 15 0.00063 15.9 2.9 28 43-73 43-70 (187)
297 2pzm_A Putative nucleotide sug 43.1 15 0.00064 15.8 4.2 31 52-84 24-54 (330)
298 2qz4_A Paraplegin; AAA+, SPG7, 43.0 8.3 0.00035 17.7 1.5 34 42-81 38-71 (262)
299 1ep3_B Dihydroorotate dehydrog 43.0 13 0.00053 16.4 2.5 16 313-328 197-212 (262)
300 2jaq_A Deoxyguanosine kinase; 43.0 8.2 0.00035 17.8 1.5 17 55-71 9-25 (205)
301 1z6t_A APAF-1, apoptotic prote 42.8 7.1 0.0003 18.2 1.2 16 53-68 154-169 (591)
302 2chg_A Replication factor C sm 42.7 8.6 0.00036 17.6 1.6 20 55-74 47-66 (226)
303 2gci_A Probable alpha-methylac 42.7 13 0.00055 16.3 2.5 32 43-82 7-38 (360)
304 3kb2_A SPBC2 prophage-derived 42.6 8.5 0.00036 17.6 1.6 17 55-71 10-26 (173)
305 2qp9_X Vacuolar protein sortin 42.5 8.4 0.00035 17.7 1.5 28 41-71 82-109 (355)
306 1d2n_A N-ethylmaleimide-sensit 42.4 8.6 0.00036 17.6 1.5 24 44-70 65-88 (272)
307 3lu1_A WBGU; rossman fold, epi 42.3 16 0.00066 15.8 4.1 31 52-84 42-72 (364)
308 3gr6_A Enoyl-[acyl-carrier-pro 42.1 16 0.00067 15.7 3.7 32 52-83 14-45 (260)
309 1ye8_A Protein THEP1, hypothet 42.1 13 0.00053 16.5 2.4 19 55-73 9-27 (178)
310 2bka_A CC3, TAT-interacting pr 42.0 16 0.00067 15.7 3.8 29 52-82 22-52 (242)
311 1ly1_A Polynucleotide kinase; 41.5 8.6 0.00036 17.6 1.4 30 46-82 5-34 (181)
312 3ius_A Uncharacterized conserv 41.4 16 0.00068 15.7 3.9 29 54-84 10-38 (286)
313 3b9p_A CG5977-PA, isoform A; A 41.3 7.9 0.00033 17.9 1.2 32 45-82 56-87 (297)
314 3eph_A TRNA isopentenyltransfe 41.1 15 0.00065 15.8 2.7 31 45-82 3-33 (409)
315 2gek_A Phosphatidylinositol ma 41.0 10 0.00044 17.0 1.8 32 54-87 34-65 (406)
316 1lv7_A FTSH; alpha/beta domain 41.0 9.2 0.00039 17.4 1.5 34 41-80 43-76 (257)
317 1e6c_A Shikimate kinase; phosp 41.0 16 0.00069 15.6 2.8 24 44-70 3-26 (173)
318 1rzu_A Glycogen synthase 1; gl 41.0 8.6 0.00036 17.6 1.4 30 54-85 16-45 (485)
319 1n7h_A GDP-D-mannose-4,6-dehyd 40.8 17 0.0007 15.6 4.1 29 52-82 32-60 (381)
320 3hdt_A Putative kinase; struct 40.7 9.3 0.00039 17.4 1.5 15 56-70 24-38 (223)
321 2ga8_A Hypothetical 39.9 kDa p 40.7 16 0.00066 15.8 2.7 26 44-72 25-50 (359)
322 1jjv_A Dephospho-COA kinase; P 40.4 9.3 0.00039 17.4 1.5 18 56-77 12-29 (206)
323 2btm_A TIM, protein (triosepho 40.2 13 0.00056 16.3 2.2 10 233-242 238-247 (252)
324 1gvn_B Zeta; postsegregational 40.2 12 0.00052 16.5 2.1 17 55-71 42-58 (287)
325 1mvo_A PHOP response regulator 40.2 17 0.00071 15.5 3.8 25 117-141 30-54 (136)
326 1gpj_A Glutamyl-tRNA reductase 40.1 16 0.00066 15.7 2.6 32 52-85 170-202 (404)
327 2gkg_A Response regulator homo 39.8 17 0.0007 15.6 2.7 30 115-144 30-59 (127)
328 1sxj_A Activator 1 95 kDa subu 39.7 8.7 0.00036 17.6 1.2 30 45-80 79-108 (516)
329 1y63_A LMAJ004144AAA protein; 39.4 8.3 0.00035 17.7 1.1 25 44-71 11-35 (184)
330 3guy_A Short-chain dehydrogena 39.4 17 0.00073 15.5 4.1 29 52-82 5-33 (230)
331 2d00_A V-type ATP synthase sub 39.3 17 0.00073 15.4 2.9 56 229-293 7-64 (109)
332 2zan_A Vacuolar protein sortin 39.3 8.1 0.00034 17.8 1.0 23 46-71 170-192 (444)
333 2ewv_A Twitching motility prot 39.2 17 0.00073 15.4 5.3 20 224-243 211-230 (372)
334 1knq_A Gluconate kinase; ALFA/ 39.0 10 0.00043 17.1 1.5 18 54-71 16-33 (175)
335 1o51_A Hypothetical protein TM 38.7 18 0.00075 15.4 3.8 27 60-86 29-55 (114)
336 3l0o_A Transcription terminati 38.5 18 0.00075 15.4 4.0 25 54-78 183-207 (427)
337 1zh2_A KDP operon transcriptio 38.5 18 0.00075 15.4 3.8 20 224-243 74-93 (121)
338 3g2e_A OORC subunit of 2-oxogl 38.4 18 0.00075 15.4 4.3 85 54-144 12-101 (194)
339 1of1_A Thymidine kinase; trans 38.4 11 0.00046 16.9 1.6 25 47-74 53-77 (376)
340 3lw7_A Adenylate kinase relate 38.4 10 0.00043 17.1 1.5 20 54-77 9-28 (179)
341 2bdt_A BH3686; alpha-beta prot 38.3 8.8 0.00037 17.5 1.1 16 55-70 11-26 (189)
342 1iir_A Glycosyltransferase GTF 38.3 18 0.00076 15.3 2.8 32 53-85 6-39 (415)
343 1uaa_A REP helicase, protein ( 38.2 16 0.00067 15.7 2.4 38 44-86 16-57 (673)
344 2gk4_A Conserved hypothetical 38.1 11 0.00045 16.9 1.5 33 45-82 19-51 (232)
345 2rc5_A Ferredoxin-NADP reducta 38.0 16 0.00067 15.7 2.4 22 222-243 165-186 (314)
346 2vl7_A XPD; helicase, unknown 38.0 18 0.00077 15.3 2.8 25 55-82 35-59 (540)
347 2oca_A DAR protein, ATP-depend 37.9 17 0.00073 15.4 2.6 56 222-282 347-404 (510)
348 1qhx_A CPT, protein (chloramph 37.9 9.7 0.00041 17.2 1.2 19 55-73 12-30 (178)
349 3fmo_B ATP-dependent RNA helic 37.9 18 0.00077 15.3 3.5 14 231-244 215-228 (300)
350 2ze6_A Isopentenyl transferase 37.8 11 0.00047 16.8 1.5 17 55-71 10-26 (253)
351 1ddg_A Sulfite reductase (NADP 37.8 18 0.00077 15.3 4.4 24 222-245 227-253 (374)
352 3fxa_A SIS domain protein; YP_ 37.8 18 0.00077 15.3 3.0 26 56-81 52-78 (201)
353 2pr7_A Haloacid dehalogenase/e 37.6 18 0.00078 15.3 3.6 30 55-84 15-44 (137)
354 1t2a_A GDP-mannose 4,6 dehydra 37.5 19 0.00078 15.3 4.1 29 52-82 28-56 (375)
355 2c5a_A GDP-mannose-3', 5'-epim 37.5 19 0.00078 15.3 4.1 30 52-83 33-62 (379)
356 1kag_A SKI, shikimate kinase I 37.4 9.8 0.00041 17.2 1.2 23 45-70 6-28 (173)
357 3kcn_A Adenylate cyclase homol 37.3 11 0.00046 16.9 1.4 27 115-141 28-55 (151)
358 2gwr_A DNA-binding response re 37.3 19 0.00078 15.2 4.8 31 115-145 30-60 (238)
359 1mh1_A RAC1; GTP-binding, GTPa 37.3 13 0.00053 16.4 1.8 21 44-67 6-26 (186)
360 1d1q_A Tyrosine phosphatase (E 37.2 16 0.00069 15.6 2.3 41 40-85 6-50 (161)
361 2i1q_A DNA repair and recombin 37.1 6.5 0.00027 18.5 0.2 28 55-82 107-134 (322)
362 3hu3_A Transitional endoplasmi 37.1 9.2 0.00039 17.4 1.0 15 258-272 404-418 (489)
363 1s96_A Guanylate kinase, GMP k 37.0 11 0.00046 16.9 1.4 24 55-78 25-48 (219)
364 2x8a_A Nuclear valosin-contain 36.8 10 0.00042 17.1 1.2 34 42-81 43-76 (274)
365 1m2o_B GTP binding, GTP-bindin 36.7 16 0.00065 15.8 2.1 36 23-66 8-43 (190)
366 2iyv_A Shikimate kinase, SK; t 36.6 12 0.0005 16.6 1.5 22 46-70 5-26 (184)
367 1jbk_A CLPB protein; beta barr 36.6 14 0.00058 16.2 1.9 28 43-73 43-70 (195)
368 2cnd_A NADH-dependent nitrate 36.5 13 0.00053 16.5 1.6 48 222-271 136-193 (270)
369 2pv7_A T-protein [includes: ch 36.5 19 0.00081 15.1 3.2 27 54-82 27-53 (298)
370 1gvh_A Flavohemoprotein; oxido 36.0 19 0.00082 15.1 2.7 49 221-271 258-314 (396)
371 1xwi_A SKD1 protein; VPS4B, AA 36.0 11 0.00045 16.9 1.2 23 46-71 48-70 (322)
372 1xhf_A DYE resistance, aerobic 35.9 20 0.00082 15.1 4.3 26 116-141 29-54 (123)
373 1oc2_A DTDP-glucose 4,6-dehydr 35.8 20 0.00082 15.1 3.7 30 52-83 8-37 (348)
374 3eq2_A Probable two-component 35.6 13 0.00053 16.4 1.6 47 115-161 30-86 (394)
375 2efe_B Small GTP-binding prote 35.6 11 0.00048 16.8 1.3 26 40-68 9-34 (181)
376 3fe2_A Probable ATP-dependent 35.4 20 0.00084 15.0 3.7 18 53-70 73-91 (242)
377 2qen_A Walker-type ATPase; unk 35.3 8.7 0.00037 17.6 0.7 21 53-73 38-58 (350)
378 1z63_A Helicase of the SNF2/RA 35.0 20 0.00085 15.0 3.0 19 56-74 66-84 (500)
379 2g4r_A MOGA, molybdopterin bio 34.9 20 0.00085 15.0 4.6 18 226-243 124-141 (160)
380 2pd4_A Enoyl-[acyl-carrier-pro 34.9 20 0.00085 15.0 3.8 32 52-83 10-41 (275)
381 1byk_A Protein (trehalose oper 34.9 20 0.00085 15.0 3.2 20 62-81 20-39 (255)
382 1y1p_A ARII, aldehyde reductas 34.8 20 0.00086 15.0 3.5 29 52-82 15-43 (342)
383 1p8a_A Protein tyrosine phosph 34.7 3.8 0.00016 20.2 -1.3 36 41-83 4-39 (146)
384 3ch4_B Pmkase, phosphomevalona 34.7 17 0.00073 15.4 2.1 27 42-71 7-36 (202)
385 3crn_A Response regulator rece 34.5 21 0.00086 14.9 4.1 26 116-141 29-54 (132)
386 2fna_A Conserved hypothetical 34.5 13 0.00055 16.3 1.4 31 54-86 38-68 (357)
387 3bre_A Probable two-component 34.3 16 0.00066 15.8 1.8 46 116-161 45-102 (358)
388 2vli_A Antibiotic resistance p 34.3 12 0.00052 16.5 1.3 27 43-72 4-31 (183)
389 3a8t_A Adenylate isopentenyltr 34.3 21 0.00087 14.9 2.5 33 43-82 39-71 (339)
390 3cnb_A DNA-binding response re 34.1 11 0.00048 16.7 1.1 25 117-141 37-61 (143)
391 2rh8_A Anthocyanidin reductase 34.0 21 0.00088 14.9 4.7 33 52-86 13-45 (338)
392 1fdr_A Flavodoxin reductase; f 33.9 12 0.00048 16.7 1.1 15 314-328 213-227 (248)
393 2h1i_A Carboxylesterase; struc 33.8 21 0.00088 14.9 5.9 55 218-273 162-223 (226)
394 2vp4_A Deoxynucleoside kinase; 33.8 5.7 0.00024 18.9 -0.5 23 46-71 22-45 (230)
395 3i42_A Response regulator rece 33.6 21 0.00089 14.8 4.0 27 116-142 29-55 (127)
396 2gza_A Type IV secretion syste 33.6 15 0.00062 15.9 1.6 10 136-145 204-213 (361)
397 1zuh_A Shikimate kinase; alpha 33.6 14 0.0006 16.1 1.5 22 46-70 10-31 (168)
398 1ur4_A Galactanase; hydrolase, 33.6 21 0.00089 14.8 4.5 54 232-286 210-266 (399)
399 2zxr_A Single-stranded DNA spe 33.5 21 0.0009 14.8 4.1 81 43-143 72-161 (666)
400 3hws_A ATP-dependent CLP prote 33.4 13 0.00053 16.5 1.2 23 46-71 54-76 (363)
401 1p5z_B DCK, deoxycytidine kina 33.3 4.5 0.00019 19.6 -1.1 29 46-77 27-55 (263)
402 3nhm_A Response regulator; pro 33.1 17 0.0007 15.6 1.8 27 115-141 28-54 (133)
403 1zxx_A 6-phosphofructokinase; 32.9 21 0.00089 14.8 2.3 110 49-159 4-123 (319)
404 1ek6_A UDP-galactose 4-epimera 32.8 22 0.00092 14.8 5.1 32 52-85 6-37 (348)
405 2pt5_A Shikimate kinase, SK; a 32.8 15 0.00062 15.9 1.5 18 54-71 8-25 (168)
406 1w2w_B 5-methylthioribose-1-ph 32.8 18 0.00076 15.3 2.0 62 116-177 6-77 (191)
407 2gi4_A Possible phosphotyrosin 32.7 11 0.00046 16.9 0.8 36 44-84 4-42 (156)
408 2vsf_A XPD, DNA repair helicas 32.7 10 0.00043 17.1 0.7 27 55-83 13-42 (602)
409 1wp9_A ATP-dependent RNA helic 32.6 22 0.00092 14.7 2.8 63 221-283 360-427 (494)
410 1n4w_A CHOD, cholesterol oxida 32.6 13 0.00053 16.4 1.1 33 44-84 6-38 (504)
411 2z9v_A Aspartate aminotransfer 32.4 22 0.00093 14.7 5.8 29 53-84 65-93 (392)
412 3crv_A XPD/RAD3 related DNA he 32.4 22 0.00093 14.7 2.3 26 55-83 31-56 (551)
413 3n0r_A Response regulator; sig 32.3 22 0.00094 14.7 2.5 23 314-336 263-285 (286)
414 1e6u_A GDP-fucose synthetase; 32.2 22 0.00094 14.7 3.4 30 52-83 7-36 (321)
415 3ced_A Methionine import ATP-b 32.2 22 0.00094 14.7 4.3 23 55-80 29-51 (98)
416 3cpj_B GTP-binding protein YPT 32.2 14 0.00061 16.0 1.4 25 40-67 10-34 (223)
417 1xvl_A Mn transporter, MNTC pr 32.2 22 0.00094 14.7 3.0 51 233-283 210-260 (321)
418 1sb8_A WBPP; epimerase, 4-epim 32.1 22 0.00094 14.7 4.1 29 52-82 31-59 (352)
419 2g3y_A GTP-binding protein GEM 32.1 21 0.00089 14.9 2.2 19 45-66 39-57 (211)
420 3ek2_A Enoyl-(acyl-carrier-pro 32.0 22 0.00095 14.7 3.7 32 52-83 18-49 (271)
421 1zp6_A Hypothetical protein AT 31.7 12 0.00049 16.7 0.8 24 55-81 18-41 (191)
422 3k1j_A LON protease, ATP-depen 31.6 14 0.00061 16.0 1.3 31 45-78 62-92 (604)
423 2ce7_A Cell division protein F 31.5 16 0.00069 15.6 1.5 27 42-71 48-74 (476)
424 1umk_A B5R, NADH-cytochrome B5 31.3 20 0.00085 15.0 2.0 49 221-271 145-202 (275)
425 1pfk_A Phosphofructokinase; tr 31.2 23 0.00097 14.6 3.5 104 49-160 5-125 (320)
426 1rif_A DAR protein, DNA helica 31.1 23 0.00098 14.6 2.6 25 57-81 57-83 (282)
427 2z0m_A 337AA long hypothetical 31.1 23 0.00098 14.6 5.6 58 221-286 219-277 (337)
428 2jk1_A HUPR, hydrogenase trans 30.9 17 0.00072 15.5 1.6 36 133-168 23-60 (139)
429 2f6r_A COA synthase, bifunctio 30.8 16 0.00068 15.7 1.4 18 56-77 85-102 (281)
430 1mkz_A Molybdenum cofactor bio 30.7 12 0.00051 16.6 0.8 21 224-244 130-150 (172)
431 2zj8_A DNA helicase, putative 30.6 22 0.00092 14.7 2.1 27 55-81 48-75 (720)
432 2cvh_A DNA repair and recombin 30.6 24 0.00099 14.5 2.3 24 55-81 29-52 (220)
433 3ney_A 55 kDa erythrocyte memb 30.5 24 0.001 14.5 2.6 30 40-72 16-45 (197)
434 1njg_A DNA polymerase III subu 30.5 17 0.00072 15.5 1.5 26 46-74 48-73 (250)
435 3io5_A Recombination and repai 30.4 24 0.001 14.5 2.6 26 55-80 37-64 (333)
436 1m7b_A RND3/RHOE small GTP-bin 30.3 17 0.00072 15.5 1.5 24 41-67 5-28 (184)
437 3c48_A Predicted glycosyltrans 30.2 24 0.001 14.5 2.9 33 54-88 41-73 (438)
438 2gf0_A GTP-binding protein DI- 30.1 24 0.001 14.4 2.3 22 43-67 8-29 (199)
439 1rrv_A Glycosyltransferase GTF 30.1 24 0.001 14.4 2.6 29 54-82 7-36 (416)
440 3lte_A Response regulator; str 30.1 24 0.001 14.4 4.1 25 117-141 33-57 (132)
441 3ojf_A Enoyl-[acyl-carrier-pro 30.0 24 0.001 14.4 3.8 32 52-83 10-41 (257)
442 1vzy_A 33 kDa chaperonin; chap 29.8 24 0.001 14.4 2.5 50 223-273 229-290 (291)
443 1g41_A Heat shock protein HSLU 29.8 24 0.001 14.4 4.5 26 42-70 49-74 (444)
444 1ojl_A Transcriptional regulat 29.7 24 0.001 14.4 5.2 28 38-72 20-47 (304)
445 3enk_A UDP-glucose 4-epimerase 29.7 24 0.001 14.4 3.8 29 52-82 9-37 (341)
446 1tev_A UMP-CMP kinase; ploop, 29.6 18 0.00077 15.3 1.5 16 55-70 12-27 (196)
447 1ukz_A Uridylate kinase; trans 29.5 25 0.001 14.4 2.4 26 43-70 14-39 (203)
448 2o1e_A YCDH; alpha-beta protei 29.5 25 0.001 14.4 3.3 60 219-283 187-246 (312)
449 2va8_A SSO2462, SKI2-type heli 29.4 25 0.001 14.4 2.8 27 55-81 55-82 (715)
450 2qr3_A Two-component system re 29.4 18 0.00075 15.4 1.5 26 116-141 29-54 (140)
451 2a35_A Hypothetical protein PA 29.3 25 0.001 14.4 3.1 29 52-82 9-39 (215)
452 1pzn_A RAD51, DNA repair and r 29.3 25 0.001 14.4 2.6 24 49-72 130-157 (349)
453 1jeo_A MJ1247, hypothetical pr 29.3 25 0.001 14.4 3.7 94 61-176 53-146 (180)
454 1vjg_A Putative lipase from th 29.3 25 0.001 14.4 3.3 53 36-88 13-68 (218)
455 1m2k_A Silent information regu 29.2 23 0.00095 14.6 2.0 28 168-196 161-188 (249)
456 1aw2_A Triosephosphate isomera 29.2 8 0.00034 17.8 -0.3 10 47-56 5-14 (256)
457 3ia7_A CALG4; glycosysltransfe 29.2 25 0.001 14.3 2.2 33 52-84 10-42 (402)
458 2q3h_A RAS homolog gene family 29.0 20 0.00083 15.1 1.6 22 42-66 19-40 (201)
459 2j0v_A RAC-like GTP-binding pr 29.0 21 0.00086 14.9 1.7 22 44-68 10-31 (212)
460 1qf9_A UMP/CMP kinase, protein 28.9 19 0.00081 15.1 1.5 16 55-70 15-30 (194)
461 1fnb_A Ferredoxin-NADP+ reduct 28.8 19 0.0008 15.2 1.5 22 222-243 162-183 (314)
462 2pl1_A Transcriptional regulat 28.8 25 0.0011 14.3 4.1 18 224-241 74-91 (121)
463 1tk9_A Phosphoheptose isomeras 28.8 25 0.0011 14.3 4.8 11 126-136 129-139 (188)
464 2bwj_A Adenylate kinase 5; pho 28.7 19 0.00081 15.1 1.5 24 44-70 12-36 (199)
465 2gxq_A Heat resistant RNA depe 28.6 25 0.0011 14.3 3.2 16 54-71 46-61 (207)
466 1tht_A Thioesterase; 2.10A {Vi 28.5 26 0.0011 14.3 4.3 83 63-145 51-139 (305)
467 3f6p_A Transcriptional regulat 28.4 26 0.0011 14.2 4.3 27 116-142 28-54 (120)
468 3c3m_A Response regulator rece 28.1 26 0.0011 14.2 4.1 25 117-141 30-54 (138)
469 3jvi_A Protein tyrosine phosph 27.7 25 0.0011 14.3 2.0 38 42-84 5-45 (161)
470 3d8u_A PURR transcriptional re 27.7 26 0.0011 14.2 3.3 20 64-83 23-42 (275)
471 2r44_A Uncharacterized protein 27.7 10 0.00044 17.0 0.0 25 44-71 47-71 (331)
472 1g8p_A Magnesium-chelatase 38 27.6 19 0.00082 15.1 1.4 48 135-195 171-218 (350)
473 2eix_A NADH-cytochrome B5 redu 27.6 26 0.0011 14.3 2.0 50 221-272 115-173 (243)
474 3eaq_A Heat resistant RNA depe 27.5 27 0.0011 14.1 5.9 21 61-81 42-62 (212)
475 2obn_A Hypothetical protein; p 27.5 27 0.0011 14.1 2.8 115 53-177 18-149 (349)
476 2atx_A Small GTP binding prote 27.4 23 0.00096 14.6 1.7 22 43-67 18-39 (194)
477 1qfj_A Protein (flavin reducta 27.3 27 0.0011 14.1 2.8 48 222-271 102-157 (232)
478 1qvr_A CLPB protein; coiled co 27.1 27 0.0011 14.1 4.3 24 47-73 195-218 (854)
479 2p5t_B PEZT; postsegregational 27.1 27 0.0011 14.1 4.5 35 41-81 30-64 (253)
480 3lyu_A Putative hydrogenase; t 27.1 27 0.0011 14.1 2.7 28 45-77 20-47 (142)
481 1m3s_A Hypothetical protein YC 26.9 27 0.0011 14.1 4.7 30 46-80 40-69 (186)
482 3iyt_A APAF-1, apoptotic prote 26.8 19 0.00078 15.2 1.2 15 54-68 161-175 (1263)
483 3lda_A DNA repair protein RAD5 26.7 27 0.0012 14.0 2.6 18 55-72 187-204 (400)
484 1yio_A Response regulatory pro 26.5 28 0.0012 14.0 3.4 46 116-161 30-85 (208)
485 2rdm_A Response regulator rece 26.3 28 0.0012 14.0 2.3 30 115-144 30-60 (132)
486 3gt7_A Sensor protein; structu 26.3 25 0.0011 14.3 1.8 25 117-141 34-58 (154)
487 2hdw_A Hypothetical protein PA 26.2 28 0.0012 14.0 4.2 36 55-90 104-141 (367)
488 2ggs_A 273AA long hypothetical 25.9 28 0.0012 13.9 3.6 27 52-80 4-30 (273)
489 3cg0_A Response regulator rece 25.9 28 0.0012 14.0 2.0 26 119-144 39-64 (140)
490 3o38_A Short chain dehydrogena 25.9 28 0.0012 13.9 3.6 30 52-82 26-55 (266)
491 2ux8_A Glucose-1-phosphate uri 25.8 28 0.0012 13.9 3.3 39 41-87 34-72 (297)
492 2orw_A Thymidine kinase; TMTK, 25.7 28 0.0012 13.9 4.6 26 56-81 13-38 (184)
493 1n0w_A DNA repair protein RAD5 25.7 26 0.0011 14.2 1.8 28 50-77 24-55 (243)
494 3lua_A Response regulator rece 25.7 29 0.0012 13.9 2.6 55 87-141 2-57 (140)
495 1r6d_A TDP-glucose-4,6-dehydra 25.6 26 0.0011 14.2 1.8 29 52-82 4-32 (337)
496 3k9c_A Transcriptional regulat 25.6 29 0.0012 13.9 3.3 115 43-161 88-223 (289)
497 2dhr_A FTSH; AAA+ protein, hex 25.6 29 0.0012 13.9 2.6 25 56-83 74-98 (499)
498 3cc1_A BH1870 protein, putativ 25.5 29 0.0012 13.9 2.4 22 127-148 39-60 (433)
499 2h7i_A Enoyl-[acyl-carrier-pro 25.5 29 0.0012 13.9 3.7 31 52-82 11-41 (269)
500 1tzf_A Glucose-1-phosphate cyt 25.5 29 0.0012 13.9 3.0 39 39-85 20-58 (259)
No 1
>1np6_A Molybdopterin-guanine dinucleotide biosynthesis protein B; mixed alpha-beta fold, elongated beta-sheet, walker A motif, P-loop structural motif; 1.90A {Escherichia coli} SCOP: c.37.1.10 PDB: 1p9n_A
Probab=97.29 E-value=0.00073 Score=46.56 Aligned_cols=105 Identities=20% Similarity=0.458 Sum_probs=62.7
Q ss_pred CCEEEECCEEECCCCCCHHHHHHHHHHHHCCCCEEEEEECCCCCCCCCEEEEC---CCCCHHHHCCHHHHHHHCCC-CCC
Q ss_conf 98899823000788874899999999852473159876045787777558714---56788770421233220576-346
Q gi|254780401|r 44 IPVICVGGFVMGGTGKTPTALAIAKAVIDKNLKPGFLSRGYGRKSRISFRVDL---EKHSAYDVGDEPLLLARRAV-TIV 119 (338)
Q Consensus 44 ~pVI~VGNitvGGtGKTP~v~~l~~~l~~~g~~~~ilsRGYg~~~~~~~~v~~---~~~~~~~vGDEp~lla~~~p-v~V 119 (338)
+|||+|-- .-|||||.++..|+..|+++|++|+++-....+ +.++. +..--.++|....+++...- ..+
T Consensus 6 ~pii~ivG--~~~SGKTTLi~~li~~L~~~G~~V~~IKh~~h~-----~~~D~~gkDs~r~~~aGA~~v~~~s~~~~a~~ 78 (174)
T 1np6_A 6 IPLLAFAA--WSGTGKTTLLKKLIPALCARGIRPGLIKHTHHD-----MDVDKPGKDSYELRKAGAAQTIVASQQRWALM 78 (174)
T ss_dssp CCEEEEEC--CTTSCHHHHHHHHHHHHHHTTCCEEEEEECCC-----------------CHHHHTCSEEEEECSSEEEEE
T ss_pred EEEEEEEC--CCCCCHHHHHHHHHHHHHHCCCEEEEEEECCCC-----CCCCCCCCCCHHHHHCCCCEEEEECCCEEEEE
T ss_conf 02799990--699989999999999999779828899745887-----67888997079999648707999628969999
Q ss_pred CCCH---HHHHHHHC----CCCCCEEEECCCCCCCCCCCEEEEEEEC
Q ss_conf 5201---22566410----2457479971832234412306999961
Q gi|254780401|r 120 TSDR---KIGVQMLL----QEGVDIIIMDDGFHSADLQADFSLIVVN 159 (338)
Q Consensus 120 ~~~R---~~~~~~~~----~~~~diiIlDDGfQh~~l~rdl~Ivl~d 159 (338)
.+.+ ....+.+. ..++|+||.. ||-|-.+.| |+|+.
T Consensus 79 ~~~~~~~~~~l~~l~~~~~~~~~DlvlvE-GfK~~~~PK---IeV~R 121 (174)
T 1np6_A 79 TETPDEEELDLQFLASRMDTSKLDLILVE-GFKHEEIAK---IVLFR 121 (174)
T ss_dssp EECSSSCCCCHHHHHHHSCGGGCSEEEEE-SCSSCCSEE---EEEEC
T ss_pred ECCCCCCCCCHHHHHHHCCCCCCCEEEEC-CCCCCCCCE---EEEEC
T ss_conf 72688678899999975155666689973-446678876---99975
No 2
>3dm5_A SRP54, signal recognition 54 kDa protein; protein-RNA, signal recognition particle, SRP-GTPase, protein targeting, cytoplasm, GTP-binding; HET: GDP; 2.51A {Pyrococcus furiosus}
Probab=96.55 E-value=0.0063 Score=39.90 Aligned_cols=201 Identities=17% Similarity=0.199 Sum_probs=106.5
Q ss_pred ECCCCCCHHHHHHHHHHHHCCCCEEEEEECCCCCCCCCEEEECCCCCHHHHCCHHHHHHHC--CCCCC---CCCHH----
Q ss_conf 0788874899999999852473159876045787777558714567887704212332205--76346---52012----
Q gi|254780401|r 54 MGGTGKTPTALAIAKAVIDKNLKPGFLSRGYGRKSRISFRVDLEKHSAYDVGDEPLLLARR--AVTIV---TSDRK---- 124 (338)
Q Consensus 54 vGGtGKTP~v~~l~~~l~~~g~~~~ilsRGYg~~~~~~~~v~~~~~~~~~vGDEp~lla~~--~pv~V---~~~R~---- 124 (338)
+=|+|||-++.-||.+++++|++|++++=- +-...|. |.-..++.. +|++- +.|-.
T Consensus 108 ~~G~GKTTT~aKLA~~~~~~g~kv~lva~D------------t~R~aA~---eQL~~~a~~~~v~v~~~~~~~dp~~i~~ 172 (443)
T 3dm5_A 108 IQGSGKTTTVAKLARYFQKRGYKVGVVCSD------------TWRPGAY---HQLRQLLDRYHIEVFGNPQEKDAIKLAK 172 (443)
T ss_dssp CTTSSHHHHHHHHHHHHHTTTCCEEEEECC------------CSSTHHH---HHHHHHHGGGTCEEECCTTCCCHHHHHH
T ss_pred CCCCCCCCHHHHHHHHHHHCCCCEEEEECC------------CCCHHHH---HHHHHHHHCCCCCEECCCCCCCHHHHHH
T ss_conf 788972327999999999769942465314------------5576699---9999985124565006764336678999
Q ss_pred HHHHHHCCCCCCEEEECCCCCC--------------CCCCCEEEEEEECCCCCCCCCCCCCCHHHHHCCHHHHHHHHHHH
Q ss_conf 2566410245747997183223--------------44123069999618433566553761365210025566514544
Q gi|254780401|r 125 IGVQMLLQEGVDIIIMDDGFHS--------------ADLQADFSLIVVNSHRGLGNGLVFPAGPLRVPLSRQLSYVDAIL 190 (338)
Q Consensus 125 ~~~~~~~~~~~diiIlDDGfQh--------------~~l~rdl~Ivl~d~~~~~gn~~llPaGpLREp~~~~l~rad~vi 190 (338)
+|..++...++|+||.|-+=.| ....++-.++|+|+.-+- .-+-=+ +....++ ..+-+|
T Consensus 173 ~a~~~a~~~~~D~viIDTAGR~~~d~~lm~EL~~i~~~~~p~e~lLVlda~~gq--~a~~~a----~~f~~~~-~i~giI 245 (443)
T 3dm5_A 173 EGVDYFKSKGVDIIIVDTAGRHKEDKALIEEMKQISNVIHPHEVILVIDGTIGQ--QAYNQA----LAFKEAT-PIGSII 245 (443)
T ss_dssp HHHHHHHHTTCSEEEEECCCCSSCCHHHHHHHHHHHHHHCCSEEEEEEEGGGGG--GHHHHH----HHHHHSC-TTEEEE
T ss_pred HHHHHHHHCCCCEEEEECCCCCHHHHHHHHHHHHHHCCCCCCEEEEEECCCCCH--HHHHHH----HHHHHHC-CCCCEE
T ss_conf 999999866999899878875365899999999752146982478741143466--789999----9855315-888357
Q ss_pred HCCCCHH-----H--HHHHCCCCHHHHHH-H-HCCCCCCCCCE-EEEEECCCCHHHHHHHHHHHCC-CCCCCC--CCCCC
Q ss_conf 2044124-----5--77631350111222-2-01321116863-8987415535789998874010-000122--14332
Q gi|254780401|r 191 YVGNKKN-----V--ISSIKNKSVYFAKL-K-PRLTFDLSGKK-VLAFSGIADTEKFFTTVRQLGA-LIEQCY--SFGDH 257 (338)
Q Consensus 191 ~~~~~~~-----~--~~~~~~~~i~~~~~-~-~~~~~~l~~k~-v~afsGIa~P~~F~~~L~~~g~-~i~~~~--~fpDH 257 (338)
+|+-+.. . .....+.|+.|... + .....++...+ +-.+-|.||...+.+..++.-- +-.... .---+
T Consensus 246 lTKlD~~akgG~als~~~~~~~PI~fig~GE~~~dle~F~p~~~~~rilGmGDi~~L~ek~~~~~~~~~~~~~~~~~~~~ 325 (443)
T 3dm5_A 246 VTKLDGSAKGGGALSAVAATGAPIKFIGTGEKIDDIEPFDPPRFVSRLLGLGDIQGLLEKFKELEKEVEIKEEDIERFLR 325 (443)
T ss_dssp EECCSSCSSHHHHHHHHHTTCCCEEEEECSSSTTCEEECCHHHHHHHHTTTTCHHHHHHHHHHHHTTHHHHHHHHHHHHT
T ss_pred EECCCCCCCCHHHHHHHHHHCCCEEEEECCCCCCCCCCCCHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_conf 73356787634897799997949799820788424552699999999828973799999999987777778999999864
Q ss_pred CCCCHHHHHHHHHHHHHCC
Q ss_conf 3489899999999756479
Q gi|254780401|r 258 AHLSDKKIAYLLDQAQQKG 276 (338)
Q Consensus 258 h~ys~~dl~~i~~~a~~~~ 276 (338)
-.|+-.|+..=.+..++.+
T Consensus 326 g~f~l~D~~~q~~~~~kmG 344 (443)
T 3dm5_A 326 GKFTLKDMYAQLEAMRKMG 344 (443)
T ss_dssp TCCCHHHHHHHHHHHHTTC
T ss_pred CCCCHHHHHHHHHHHHHCC
T ss_conf 9967999999999998147
No 3
>3kl4_A SRP54, signal recognition 54 kDa protein; signal recognition particle, SRP, SRP54, FFH, signal sequenc peptide; 3.50A {Sulfolobus solfataricus P2} PDB: 1qzx_A 1qzw_A
Probab=96.54 E-value=0.0051 Score=40.52 Aligned_cols=200 Identities=17% Similarity=0.189 Sum_probs=104.2
Q ss_pred ECCCCCCHHHHHHHHHHHHCCCCEEEEEECCCCCCCCCEEEECCCCCHHHHCCHHH-HHHHC--CCCCCCCCH---H---
Q ss_conf 07888748999999998524731598760457877775587145678877042123-32205--763465201---2---
Q gi|254780401|r 54 MGGTGKTPTALAIAKAVIDKNLKPGFLSRGYGRKSRISFRVDLEKHSAYDVGDEPL-LLARR--AVTIVTSDR---K--- 124 (338)
Q Consensus 54 vGGtGKTP~v~~l~~~l~~~g~~~~ilsRGYg~~~~~~~~v~~~~~~~~~vGDEp~-lla~~--~pv~V~~~R---~--- 124 (338)
+-|+|||-++.-||.+++++|++|++++= | +.+-..=|-+ .+++. +|++....- .
T Consensus 105 ~~G~GKTTTiaKLA~~~~~~g~kV~lva~------------D----tyR~aA~eQL~~~a~~~~v~v~~~~~~~dp~~v~ 168 (433)
T 3kl4_A 105 VQGSGKTTTAGKLAYFYKKRGYKVGLVAA------------D----VYRPAAYDQLLQLGNQIGVQVYGEPNNQNPIEIA 168 (433)
T ss_dssp CTTSCHHHHHHHHHHHHHHTTCCEEEEEE------------C----CSCHHHHHHHHHHHHTTTCCEECCTTCSCHHHHH
T ss_pred CCCCCCCCHHHHHHHHHHHCCCEEEEEEC------------C----CCCCCHHHHHHHHHHCCCCEEECCCCCCCHHHHH
T ss_conf 78887013499999999865981589844------------7----7566779999998724780460466656767789
Q ss_pred -HHHHHHCCCCCCEEEECCCCC-C---------------CCCCCEEEEEEECCCCCCCCCCCCCCHHHHHCCHHHHHHHH
Q ss_conf -256641024574799718322-3---------------44123069999618433566553761365210025566514
Q gi|254780401|r 125 -IGVQMLLQEGVDIIIMDDGFH-S---------------ADLQADFSLIVVNSHRGLGNGLVFPAGPLRVPLSRQLSYVD 187 (338)
Q Consensus 125 -~~~~~~~~~~~diiIlDDGfQ-h---------------~~l~rdl~Ivl~d~~~~~gn~~llPaGpLREp~~~~l~rad 187 (338)
.+...+...++|+||.|-+=. | ..+.++-.++|+|+.-+. .-+-= -+.....+ ..+
T Consensus 169 ~~~~~~a~~~~~DvvlIDTAGR~~~d~~~~Lm~El~~i~~~~~p~e~~LVlda~~Gq--~~~~~----a~~f~~~~-~~~ 241 (433)
T 3kl4_A 169 KKGVDIFVKNKMDIIIVDTAGRHGYGEETKLLEEMKEMYDVLKPDDVILVIDASIGQ--KAYDL----ASRFHQAS-PIG 241 (433)
T ss_dssp HHHHHHTTTTTCSEEEEEECCCSSSCCTTHHHHHHHHHHHHHCCSEEEEEEEGGGGG--GGHHH----HHHHHHHC-SSE
T ss_pred HHHHHHHHHCCCCEEEEECCCCCCCCCHHHHHHHHHHHHHHCCCCEEEEEEECCCCC--HHHHH----HHHCCCCC-CCC
T ss_conf 999998763489989974667555240999999999998750976589997346684--17999----98501357-765
Q ss_pred HHHHCCCCHHH-------HHHHCCCCHHHHHH-H-HCCCCCCCCCE-EEEEECCCCHHHHHHHHHHHC-CCCCCC---CC
Q ss_conf 54420441245-------77631350111222-2-01321116863-898741553578999887401-000012---21
Q gi|254780401|r 188 AILYVGNKKNV-------ISSIKNKSVYFAKL-K-PRLTFDLSGKK-VLAFSGIADTEKFFTTVRQLG-ALIEQC---YS 253 (338)
Q Consensus 188 ~vi~~~~~~~~-------~~~~~~~~i~~~~~-~-~~~~~~l~~k~-v~afsGIa~P~~F~~~L~~~g-~~i~~~---~~ 253 (338)
-+|+|+-+... .....+.|+.|... + +.....+...+ +-.+-|.||...+.+-.++.- ..-... ..
T Consensus 242 giIlTKlD~takgG~alsi~~~t~~PI~fig~Ge~i~Dle~F~~~~~~~~iLGmgDi~~Lvek~~~~~~~~~~~~~~~~~ 321 (433)
T 3kl4_A 242 SVIITKMDGTAKGGGALSAVVATGATIKFIGTGEKIDELETFNAKRFVSRILGMGDIESILEKVKGLEEYDKIQKKMEDV 321 (433)
T ss_dssp EEEEECGGGCSCHHHHHHHHHHHTCEEEEEECCSSSSCEEECCHHHHHHHHHCSSHHHHHHHHHHHC-------------
T ss_pred EEEEEEECCCCCCHHHHHHHHHHCCCEEEEEECCCCCCCCCCCHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 26886323788602885599998888399984888124876899999999738971899999999865345689999988
Q ss_pred CCCCCCCCHHHHHHHHHHHHHCC
Q ss_conf 43323489899999999756479
Q gi|254780401|r 254 FGDHAHLSDKKIAYLLDQAQQKG 276 (338)
Q Consensus 254 fpDHh~ys~~dl~~i~~~a~~~~ 276 (338)
-.-+-.|+-.|+..=.+..++.+
T Consensus 322 ~~~~g~f~l~D~~~q~~~~~kmG 344 (433)
T 3kl4_A 322 MEGKGKLTLRDVYAQIIALRKMG 344 (433)
T ss_dssp ------CCHHHHHHHHHHHHHCC
T ss_pred HHHCCCCCHHHHHHHHHHHHCCC
T ss_conf 86348703999999999997136
No 4
>2qy9_A Cell division protein FTSY; SRP receptor, protein targeting, simibi class GTPase, cell cycle, GTP-binding, inner membrane, membrane; 1.90A {Escherichia coli} SCOP: a.24.13.1 c.37.1.10 PDB: 1fts_A
Probab=96.30 E-value=0.0087 Score=38.91 Aligned_cols=100 Identities=17% Similarity=0.243 Sum_probs=62.2
Q ss_pred EEEECCEEECCCCCCHHHHHHHHHHHHCCCCEEEEEECCCCCCCCCEEEECCCCCHHHHCCHHHH-HHH--CCCCCCCCC
Q ss_conf 89982300078887489999999985247315987604578777755871456788770421233-220--576346520
Q gi|254780401|r 46 VICVGGFVMGGTGKTPTALAIAKAVIDKNLKPGFLSRGYGRKSRISFRVDLEKHSAYDVGDEPLL-LAR--RAVTIVTSD 122 (338)
Q Consensus 46 VI~VGNitvGGtGKTP~v~~l~~~l~~~g~~~~ilsRGYg~~~~~~~~v~~~~~~~~~vGDEp~l-la~--~~pv~V~~~ 122 (338)
+..|| +-|+|||-++.-||.+++++|++|++++= ++.+-.+=|.+. +++ .+|+++...
T Consensus 102 il~vG---~nG~GKTTTiaKLA~~~~~~~~~V~lva~----------------Dt~R~aA~eQL~~~a~~~~v~~~~~~~ 162 (309)
T 2qy9_A 102 ILMVG---VNGVGKTTTIGKLARQFEQQGKSVMLAAG----------------DTFRAAAVEQLQVWGQRNNIPVIAQHT 162 (309)
T ss_dssp EEEEC---CTTSCHHHHHHHHHHHHHTTTCCEEEECC----------------CTTCHHHHHHHHHHHHHTTCCEECCST
T ss_pred EEEEC---CCCCCCCCHHHHHHHHHHHCCCCCEEEEC----------------CCCCHHHHHHHHHHHHHCCCCEEECCC
T ss_conf 99965---76667655078999999856776148644----------------530654999999987524983773378
Q ss_pred HHH---HH----HHHCCCCCCEEEECC-CCCCCC-------------CC------CEEEEEEECCCCCC
Q ss_conf 122---56----641024574799718-322344-------------12------30699996184335
Q gi|254780401|r 123 RKI---GV----QMLLQEGVDIIIMDD-GFHSAD-------------LQ------ADFSLIVVNSHRGL 164 (338)
Q Consensus 123 R~~---~~----~~~~~~~~diiIlDD-GfQh~~-------------l~------rdl~Ivl~d~~~~~ 164 (338)
... .+ +.+...++|+||.|- |-.|.. +. ++-.++++|+..+.
T Consensus 163 ~~d~~~i~~~~~~~a~~~~~D~vliDTaGR~~~~~~lm~EL~~i~~~~~~~~~~~p~e~~LVlda~~g~ 231 (309)
T 2qy9_A 163 GADSASVIFDAIQAAKARNIDVLIADTAGRLQNKSHLMEELKKIVRVMKKLDVEAPHEVMLTIDASTGQ 231 (309)
T ss_dssp TCCHHHHHHHHHHHHHHTTCSEEEECCCCCGGGHHHHHHHHHHHHHHHTTTCTTCCSEEEEEEEGGGTH
T ss_pred CCCHHHHHHHHHHHHHHCCCCEEEECCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCEEEEECCCCCCH
T ss_conf 887999999999999976998999689887767899999999999998753367872456510032337
No 5
>2ffh_A Protein (FFH); SRP54, signal recognition particle, GTPase, M domain, RNA-binding, signal sequence-binding, helix-turn-helix, protein targeting; 3.20A {Thermus aquaticus} SCOP: a.24.13.1 a.36.1.1 c.37.1.10 PDB: 2iy3_A
Probab=96.27 E-value=0.011 Score=38.27 Aligned_cols=197 Identities=20% Similarity=0.236 Sum_probs=104.9
Q ss_pred ECCCCCCHHHHHHHHHHHHCCCCEEEEEECCCCCCCCCEEEECCCCCHHHHCCHHH-HHHH--CCCCCCCC---CHHH--
Q ss_conf 07888748999999998524731598760457877775587145678877042123-3220--57634652---0122--
Q gi|254780401|r 54 MGGTGKTPTALAIAKAVIDKNLKPGFLSRGYGRKSRISFRVDLEKHSAYDVGDEPL-LLAR--RAVTIVTS---DRKI-- 125 (338)
Q Consensus 54 vGGtGKTP~v~~l~~~l~~~g~~~~ilsRGYg~~~~~~~~v~~~~~~~~~vGDEp~-lla~--~~pv~V~~---~R~~-- 125 (338)
+.|+|||-++.-||.+++.+|++|++++= ++.+-..=|.+ .+++ .+|++... +-..
T Consensus 106 ~~G~GKTTT~aKLA~~~~~~g~kv~lva~----------------Dt~R~aA~eQL~~~a~~~~vp~~~~~~~~dp~~i~ 169 (425)
T 2ffh_A 106 LQGSGKTTTAAKLALYYKGKGRRPLLVAA----------------DTQRPAAREQLRLLGEKVGVPVLEVMDGESPESIR 169 (425)
T ss_dssp CTTSSHHHHHHHHHHHHHTTTCCEEEEEC----------------CSSCHHHHHHHHHHHHHHTCCEEECCTTCCHHHHH
T ss_pred CCCCCCHHHHHHHHHHHHHCCCEEEEEEC----------------CCCCCCHHHHHHHHHHHCCCCEECCCCCCCHHHHH
T ss_conf 78876100899999999863983689843----------------55675679999999987088212246777767789
Q ss_pred --HHHHHCCCCCCEEEECCCC-C-------------CCCCCCEEEEEEECCCCCCCCCCCCCCHHHHHCCHHHHHHHHHH
Q ss_conf --5664102457479971832-2-------------34412306999961843356655376136521002556651454
Q gi|254780401|r 126 --GVQMLLQEGVDIIIMDDGF-H-------------SADLQADFSLIVVNSHRGLGNGLVFPAGPLRVPLSRQLSYVDAI 189 (338)
Q Consensus 126 --~~~~~~~~~~diiIlDDGf-Q-------------h~~l~rdl~Ivl~d~~~~~gn~~llPaGpLREp~~~~l~rad~v 189 (338)
+..++...++|+||.|-+= . +..+.+|-.++|+|+.-+- .-+--+ ++ +..++ ..+-+
T Consensus 170 ~~~~~~ak~~~~DviiIDTAGR~~~d~~lm~EL~~i~~~~~p~e~~LVlda~~gq--~~~~~a---~~-F~~~~-~i~gv 242 (425)
T 2ffh_A 170 RRVEEKARLEARDLILVDTAGRLQIDEPLMGELARLKEVLGPDEVLLVLDAMTGQ--EALSVA---RA-FDEKV-GVTGL 242 (425)
T ss_dssp HHHHHHHHHTTCSEEEEECCCCSSCCHHHHHHHHHHHHHHCCSEEEEEEEGGGTT--HHHHHH---HH-HHHHT-CCCEE
T ss_pred HHHHHHHHHCCCCEEEEECCCCHHHHHHHHHHHHHHHHHHCCCEEEEEEECCCCH--HHHHHH---HH-HHHHC-CCCCE
T ss_conf 9999999866998899966651253699999999999861985699973055586--789999---99-88646-99854
Q ss_pred HHCCCCHHH-------HHHHCCCCHHHHHHH--HCCCCCCCCCEE-EEEECCCCHHHHHHHHHHHCCCCCCCCCCCCCCC
Q ss_conf 420441245-------776313501112222--013211168638-9874155357899988740100001221433234
Q gi|254780401|r 190 LYVGNKKNV-------ISSIKNKSVYFAKLK--PRLTFDLSGKKV-LAFSGIADTEKFFTTVRQLGALIEQCYSFGDHAH 259 (338)
Q Consensus 190 i~~~~~~~~-------~~~~~~~~i~~~~~~--~~~~~~l~~k~v-~afsGIa~P~~F~~~L~~~g~~i~~~~~fpDHh~ 259 (338)
|+|+-+... .....+.|++|...- +.....+..+++ --+-|.||...+.+-.++..-+-. .-..+..
T Consensus 243 IlTKlD~takgG~alsi~~~t~~PI~fig~GE~~~Dle~F~p~~~~~rilGmGDi~~L~ek~~~~~~~~~---~~~~~~~ 319 (425)
T 2ffh_A 243 VLTKLDGDARGGAALSARHVTGKPIYFAGVSEKPEGLEPFYPERLAGRILGMGDVASLAEKVRAAGLEAE---APKSAKE 319 (425)
T ss_dssp EEESGGGCSSCHHHHHHHHHHCCCEEEEECSSSGGGEEECCHHHHHHHHHTSSCCCCHHHHHHHC--------------C
T ss_pred EEECCCCCCCCHHHHHHHHHHCCCEEEEECCCCHHHCCCCCHHHHHHHHCCCCCHHHHHHHHHHHHHHHH---HHHHHHH
T ss_conf 7632467775139999999869887999469972623414899999997187407899999988766554---4434544
Q ss_pred CCHHHHHHHHHHHHHCC
Q ss_conf 89899999999756479
Q gi|254780401|r 260 LSDKKIAYLLDQAQQKG 276 (338)
Q Consensus 260 ys~~dl~~i~~~a~~~~ 276 (338)
|+-.|+..=.+..++.+
T Consensus 320 f~l~D~~~q~~~~~kmG 336 (425)
T 2ffh_A 320 LSLEDFLKQMQNLKRLG 336 (425)
T ss_dssp CCHHHHHHHHHHHHHTC
T ss_pred HHHHHHHHHHHHHHCHH
T ss_conf 14999999999986510
No 6
>1j8m_F SRP54, signal recognition 54 kDa protein; signaling protein; 2.00A {Acidianus ambivalens} SCOP: a.24.13.1 c.37.1.10 PDB: 1j8y_F
Probab=96.26 E-value=0.0051 Score=40.55 Aligned_cols=79 Identities=29% Similarity=0.317 Sum_probs=50.9
Q ss_pred EEEECCEEECCCCCCHHHHHHHHHHHHCCCCEEEEEECCCCCCCCCEEEECCCCCHHHHCCHHHHH-HH--CCCCCCCCC
Q ss_conf 899823000788874899999999852473159876045787777558714567887704212332-20--576346520
Q gi|254780401|r 46 VICVGGFVMGGTGKTPTALAIAKAVIDKNLKPGFLSRGYGRKSRISFRVDLEKHSAYDVGDEPLLL-AR--RAVTIVTSD 122 (338)
Q Consensus 46 VI~VGNitvGGtGKTP~v~~l~~~l~~~g~~~~ilsRGYg~~~~~~~~v~~~~~~~~~vGDEp~ll-a~--~~pv~V~~~ 122 (338)
|..|| +=|+|||-++.-||.++++.|++|++++= ++.+-.+-|.+.. ++ ..|++++.+
T Consensus 101 i~lvG---~~G~GKTTt~aKLA~~~~~~g~kv~l~a~----------------Dt~R~aA~eQL~~~a~~~~v~~~~~~~ 161 (297)
T 1j8m_F 101 IMLVG---VQGTGKTTTAGKLAYFYKKKGFKVGLVGA----------------DVYRPAALEQLQQLGQQIGVPVYGEPG 161 (297)
T ss_dssp EEEEC---SSCSSTTHHHHHHHHHHHHTTCCEEEEEC----------------CCSSSHHHHHHHHHHHHHTCCEECCTT
T ss_pred EEEEC---CCCCCCHHHHHHHHHHHHHCCCCCCEEEC----------------CCCCHHHHHHHHHHHHHCCCEEEECCC
T ss_conf 99746---76666203799999999967976411211----------------565444899999986313951542377
Q ss_pred HHHH-------HHHHCCCCCCEEEECCC
Q ss_conf 1225-------66410245747997183
Q gi|254780401|r 123 RKIG-------VQMLLQEGVDIIIMDDG 143 (338)
Q Consensus 123 R~~~-------~~~~~~~~~diiIlDDG 143 (338)
.... ...+...+.|+||.|-+
T Consensus 162 ~~d~~~v~~~a~~~~~~~~~D~vlIDTa 189 (297)
T 1j8m_F 162 EKDVVGIAKRGVEKFLSEKMEIIIVDTA 189 (297)
T ss_dssp CCCHHHHHHHHHHHHHHTTCSEEEEECC
T ss_pred CCCHHHHHHHHHHHHHHCCCCEEEECCC
T ss_conf 7776789999999998559988995487
No 7
>1xjc_A MOBB protein homolog; structural genomics, midwest center for structural genomics, PSI, protein structure initiative, MCSG; 2.10A {Geobacillus stearothermophilus} SCOP: c.37.1.10
Probab=96.22 E-value=0.012 Score=37.96 Aligned_cols=36 Identities=22% Similarity=0.263 Sum_probs=30.4
Q ss_pred CEEEECCEEECCCCCCHHHHHHHHHHHHCCCCEEEEEE
Q ss_conf 88998230007888748999999998524731598760
Q gi|254780401|r 45 PVICVGGFVMGGTGKTPTALAIAKAVIDKNLKPGFLSR 82 (338)
Q Consensus 45 pVI~VGNitvGGtGKTP~v~~l~~~l~~~g~~~~ilsR 82 (338)
+||+|--. -|||||-++..|++.|+++|++|+++..
T Consensus 5 ki~~I~G~--~gSGKTTLi~~Li~~L~~~G~~V~~iKh 40 (169)
T 1xjc_A 5 NVWQVVGY--KHSGKTTLMEKWVAAAVREGWRVGTVKH 40 (169)
T ss_dssp CEEEEECC--TTSSHHHHHHHHHHHHHHTTCCEEEEEC
T ss_pred EEEEEEEC--CCCCHHHHHHHHHHHHHHCCCEEEEEEC
T ss_conf 59999819--9998999999999999976990567742
No 8
>1jbw_A Folylpolyglutamate synthase; FPGS folate AMPPCP ternary complex, ligase; HET: KCX ACQ TMF; 1.85A {Lactobacillus casei} SCOP: c.59.1.2 c.72.2.2 PDB: 1fgs_A* 1jbv_A* 2gca_A 2gc5_A* 2gc6_A* 2gcb_A
Probab=96.21 E-value=0.037 Score=34.46 Aligned_cols=110 Identities=21% Similarity=0.168 Sum_probs=60.7
Q ss_pred HHHHCCCCCCCCCEEEECCEEECCCCCCHHHHHHHHHHHHCCCCEEEEEECCCCCCCCCEEEECCCCCHHH---HCCH--
Q ss_conf 97404643388988998230007888748999999998524731598760457877775587145678877---0421--
Q gi|254780401|r 33 LMKRGQRLHAPIPVICVGGFVMGGTGKTPTALAIAKAVIDKNLKPGFLSRGYGRKSRISFRVDLEKHSAYD---VGDE-- 107 (338)
Q Consensus 33 ~~~~~~~~~~~~pVI~VGNitvGGtGKTP~v~~l~~~l~~~g~~~~ilsRGYg~~~~~~~~v~~~~~~~~~---vGDE-- 107 (338)
...++.+. -+++||.| +|=-|||-++.+|+..|+..|+++|..+-++-.....-+.+....-+..+ ..++
T Consensus 29 l~~lg~P~-~~~~~I~V----TGTNGKTTTs~~l~~iL~~~G~kvG~~tSp~l~~~~eri~~~g~~i~~~~~~~~~~~~~ 103 (428)
T 1jbw_A 29 LHALGNPQ-QQGRYIHV----TGTNGKGSAANAIAHVLEASGLTVGLYTSPFIMRFNERIMIDHEPIPDAALVNAVAFVR 103 (428)
T ss_dssp HHHTTCGG-GSSCEEEE----ECSSCHHHHHHHHHHHHHHTTCCEEEECSSCSSCGGGGEEETTEECCHHHHHHHHHHHH
T ss_pred HHHCCCHH-HHCCEEEE----ECCCCHHHHHHHHHHHHHHCCCCEEEECCCCCCCEEEEEEECCEECCHHHHHHHHHHHH
T ss_conf 99749938-70998999----89822799999999999988998899788874702448999999557899999999989
Q ss_pred HHHHH---HCC---CCCCCCCHHHHHHHHCCCCCCEEEECCCCCCC
Q ss_conf 23322---057---63465201225664102457479971832234
Q gi|254780401|r 108 PLLLA---RRA---VTIVTSDRKIGVQMLLQEGVDIIIMDDGFHSA 147 (338)
Q Consensus 108 p~lla---~~~---pv~V~~~R~~~~~~~~~~~~diiIlDDGfQh~ 147 (338)
+.+.. ... +....-....+........+|+++++.|.+++
T Consensus 104 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~e~~~~~~ 149 (428)
T 1jbw_A 104 AALERLQQQQADFNVTEFEFITALAYWYFRQRQVDVAVIEVGIGGD 149 (428)
T ss_dssp HHHHHHHHHSTTCCCCHHHHHHHHHHHHHHHTTCSEEEEECSSSST
T ss_pred HHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEECCCHHH
T ss_conf 9999887522688886899999999999987267479975230211
No 9
>2j37_W Signal recognition particle 54 kDa protein (SRP54); ribosome, SRP, translation/RNA; 8.00A {Canis SP} PDB: 1wgw_A
Probab=96.11 E-value=0.0074 Score=39.42 Aligned_cols=205 Identities=17% Similarity=0.183 Sum_probs=106.5
Q ss_pred EEEECCEEECCCCCCHHHHHHHHHHHHCCCCEEEEEECCCCCCCCCEEEECCCCCHHHHCCHHH-HHHH--CCCCCCCCC
Q ss_conf 8998230007888748999999998524731598760457877775587145678877042123-3220--576346520
Q gi|254780401|r 46 VICVGGFVMGGTGKTPTALAIAKAVIDKNLKPGFLSRGYGRKSRISFRVDLEKHSAYDVGDEPL-LLAR--RAVTIVTSD 122 (338)
Q Consensus 46 VI~VGNitvGGtGKTP~v~~l~~~l~~~g~~~~ilsRGYg~~~~~~~~v~~~~~~~~~vGDEp~-lla~--~~pv~V~~~ 122 (338)
|.-|| +=|+|||-++.-||.+++++|++|++++= |+-.-.| =|-+ .++. ..|++++..
T Consensus 104 i~lvG---~~GvGKTTT~aKLA~~~~~~g~kv~Lva~------------Dt~R~aA----veQLk~~a~~~~vp~~~~~~ 164 (504)
T 2j37_W 104 IMFVG---LQGSGKTTTCSKLAYYYQRKGWKTCLICA------------DTFRAGA----FDQLKQNATKARIPFYGSYT 164 (504)
T ss_dssp EEEEC---STTSSHHHHHHHHHHHHHHTTCCEEEEEE------------CCSSSHH----HHHHHHHHHHHTCCEEECCC
T ss_pred EEEEC---CCCCCCCCCHHHHHHHHHHHHCCCCCCCC------------CCCCHHH----HHHHHHHHHCCCCCCCCCCC
T ss_conf 99966---87888655089999999860020200001------------2367779----99999987304776557544
Q ss_pred HH-------HHHHHHCCCCCCEEEECCCCCC--------------CCCCCEEEEEEECCCCCCCCCCCCCCHHHHHCCHH
Q ss_conf 12-------2566410245747997183223--------------44123069999618433566553761365210025
Q gi|254780401|r 123 RK-------IGVQMLLQEGVDIIIMDDGFHS--------------ADLQADFSLIVVNSHRGLGNGLVFPAGPLRVPLSR 181 (338)
Q Consensus 123 R~-------~~~~~~~~~~~diiIlDDGfQh--------------~~l~rdl~Ivl~d~~~~~gn~~llPaGpLREp~~~ 181 (338)
.. ++.+.+.+.++|+||.|-+=.| ..+.++-.++|+|+.-+ ..-+ .--+.+..
T Consensus 165 ~~dp~~i~~~~~~~ak~~~~DvIiIDTAGR~~~d~~lm~El~~i~~~~~P~e~llVlda~~G--q~a~----~~a~~F~~ 238 (504)
T 2j37_W 165 EMDPVIIASEGVEKFKNENFEIIIVDTSGRHKQEDSLFEEMLQVANAIQPDNIVYVMDASIG--QACE----AQAKAFKD 238 (504)
T ss_dssp CSCHHHHHHHHHHHHHHTTCCEEEEEECCCCTTCHHHHHHHHHHHHHHCCSEEEEEEETTCC--TTHH----HHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHCCCCEEEECCCCCCHHHHHHHHHHHHHHHCCCCCEEEEECCHHHC--HHHH----HHHHHHHH
T ss_conf 34768899999999986699889955867653179999999987601586313552100202--3489----99999875
Q ss_pred HHHHHHHHHHCCCCHH-----H--HHHHCCCCHHHHH-HH-HCCCCCCCCCE-EEEEECCCCHHHHHHHHHHHCCCCCC-
Q ss_conf 5665145442044124-----5--7763135011122-22-01321116863-89874155357899988740100001-
Q gi|254780401|r 182 QLSYVDAILYVGNKKN-----V--ISSIKNKSVYFAK-LK-PRLTFDLSGKK-VLAFSGIADTEKFFTTVRQLGALIEQ- 250 (338)
Q Consensus 182 ~l~rad~vi~~~~~~~-----~--~~~~~~~~i~~~~-~~-~~~~~~l~~k~-v~afsGIa~P~~F~~~L~~~g~~i~~- 250 (338)
++ ..+-+|+|+-+.+ . .....+.|+.|.. .+ ......+..++ +-.+-|.||...+.+..++...+-..
T Consensus 239 ~v-~i~gvIlTKlDg~argG~aLSi~~~t~~PI~fig~GE~~~Dle~F~p~r~a~riLGmGDi~~Lvek~~~~~~~~~~~ 317 (504)
T 2j37_W 239 KV-DVASVIVTKLDGHAKGGGALSAVAATKSPIIFIGTGEHIDDFEPFKTQPFISKLLGMGDIEGLIDKVNELKLDDNEA 317 (504)
T ss_dssp HH-CCCCEEEECTTSCCCCTHHHHHHHHHCCCEEEEECSSSTTCEECCTHHHHHHCCCTTTTTTTTHHHHTTTTTCCCTT
T ss_pred HC-CCCEEEEEEECCCCCCHHHHHHHHHHCCCCEEEEECCCCCCCCCCCHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHH
T ss_conf 42-66605775113677614674489987869678752788435776798999998637874667999999866666799
Q ss_pred CCCCCCCCCCCHHHHHHHHHHHHHCC
Q ss_conf 22143323489899999999756479
Q gi|254780401|r 251 CYSFGDHAHLSDKKIAYLLDQAQQKG 276 (338)
Q Consensus 251 ~~~fpDHh~ys~~dl~~i~~~a~~~~ 276 (338)
...=--+-.|+-+|+..=.+..++.+
T Consensus 318 ~~~k~~~g~F~l~D~~~Q~~~~~kmG 343 (504)
T 2j37_W 318 LIEKLKHGQFTLRDMYEQFQNIMKMG 343 (504)
T ss_dssp TTTSCTTSGGGGCCCHHHHHHCCCCC
T ss_pred HHHHHCCCCCCHHHHHHHHHHHHHCC
T ss_conf 99873168856999999999998308
No 10
>1ls1_A Signal recognition particle protein; FFH, SRP54, SRP, GTPase, ultrahigh resolution, protein transport; 1.10A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 1jpn_B* 1jpj_A* 1ry1_U* 2j45_A* 1o87_A* 2c04_A* 2j46_A* 1rj9_B* 2c03_A* 2j7p_A* 1okk_A* 2cnw_A* 1ng1_A* 3ng1_A 1ffh_A 2ng1_A*
Probab=96.07 E-value=0.015 Score=37.18 Aligned_cols=157 Identities=22% Similarity=0.268 Sum_probs=85.1
Q ss_pred ECCCCCCHHHHHHHHHHHHCCCCEEEEEECCCCCCCCCEEEECCCCCHHHHCCHHHHH-HH--CCCCCCCCCHHH-----
Q ss_conf 0788874899999999852473159876045787777558714567887704212332-20--576346520122-----
Q gi|254780401|r 54 MGGTGKTPTALAIAKAVIDKNLKPGFLSRGYGRKSRISFRVDLEKHSAYDVGDEPLLL-AR--RAVTIVTSDRKI----- 125 (338)
Q Consensus 54 vGGtGKTP~v~~l~~~l~~~g~~~~ilsRGYg~~~~~~~~v~~~~~~~~~vGDEp~ll-a~--~~pv~V~~~R~~----- 125 (338)
+.|+|||-++.-||.+++.+|++|++++= ++.+-.+-|.+.. +. ..|++++.+-..
T Consensus 106 ~~G~GKTTt~aKLA~~~~~~g~kv~li~~----------------Dt~R~~A~eQL~~~a~~~~v~~~~~~~~~~~~~~~ 169 (295)
T 1ls1_A 106 LQGSGKTTTAAKLALYYKGKGRRPLLVAA----------------DTQRPAAREQLRLLGEKVGVPVLEVMDGESPESIR 169 (295)
T ss_dssp CTTTTHHHHHHHHHHHHHHTTCCEEEEEC----------------CSSCHHHHHHHHHHHHHHTCCEEECCTTCCHHHHH
T ss_pred CCCCCCEEHHHHHHHHHHHCCCEEEEEEC----------------CCCCCCHHHHHHHHHHHCCCEEEEECCCCCHHHHH
T ss_conf 78898521199999999877984457741----------------45553389999999986496389506887668999
Q ss_pred --HHHHHCCCCCCEEEECCC-CCCCC-------------CCCEEEEEEECCCCCCCCCCCCCCHHHHHC--CHHHHHHHH
Q ss_conf --566410245747997183-22344-------------123069999618433566553761365210--025566514
Q gi|254780401|r 126 --GVQMLLQEGVDIIIMDDG-FHSAD-------------LQADFSLIVVNSHRGLGNGLVFPAGPLRVP--LSRQLSYVD 187 (338)
Q Consensus 126 --~~~~~~~~~~diiIlDDG-fQh~~-------------l~rdl~Ivl~d~~~~~gn~~llPaGpLREp--~~~~l~rad 187 (338)
+...+...+.|+|+.|=+ ..|+. ..++.-++|+|+..+.. -+++- ...+ -..|
T Consensus 170 ~~~~~~~~~~~~d~vlIDTaGr~~~~~~l~~el~~i~~~~~p~~~~LVl~a~~~~~--------~~~~~~~f~~~-~~~~ 240 (295)
T 1ls1_A 170 RRVEEKARLEARDLILVDTAGRLQIDEPLMGELARLKEVLGPDEVLLVLDAMTGQE--------ALSVARAFDEK-VGVT 240 (295)
T ss_dssp HHHHHHHHHHTCCEEEEECCCCSSCCHHHHHHHHHHHHHHCCSEEEEEEEGGGTHH--------HHHHHHHHHHH-TCCC
T ss_pred HHHHHHHHHCCCCEEEEECCCCCHHHHHHHHHHHHHHHHHCCCEEEEEECCCCCCC--------HHHHHHHHHHH-CCCC
T ss_conf 99999987528866999566630206889999999998519855899853888730--------69999999863-5997
Q ss_pred HHHHCCCCHHH-----HH--HHCCCCHHHHHHHHCCCCCCCCCEEEEEECCCCHHHHHHHHHHHC
Q ss_conf 54420441245-----77--631350111222201321116863898741553578999887401
Q gi|254780401|r 188 AILYVGNKKNV-----IS--SIKNKSVYFAKLKPRLTFDLSGKKVLAFSGIADTEKFFTTVRQLG 245 (338)
Q Consensus 188 ~vi~~~~~~~~-----~~--~~~~~~i~~~~~~~~~~~~l~~k~v~afsGIa~P~~F~~~L~~~g 245 (338)
.+|+|+-+... ++ ...+.|+.+...-. .+.|+ . .++|++|.+.|-.+|
T Consensus 241 ~~I~TKlDet~~~G~~ls~~~~~~~Pi~~~~~Gq-~~~Dl-----~----~~~~~~~~~~llG~g 295 (295)
T 1ls1_A 241 GLVLTKLDGDARGGAALSARHVTGKPIYFAGVSE-KPEGL-----E----PFYPERLAGRILGMG 295 (295)
T ss_dssp EEEEECGGGCSSCHHHHHHHHHHCCCEEEEC-------CC-----E----ECCHHHHHHHHTTCC
T ss_pred EEEEEEECCCCCCCHHHHHHHHHCCCEEEECCCC-CHHHC-----C----CCCHHHHHHHHHCCC
T ss_conf 5999701378863099999999898989982897-85636-----5----289999999973899
No 11
>2og2_A Putative signal recognition particle receptor; nucleotide-binding, protein transport; 2.00A {Arabidopsis thaliana}
Probab=96.07 E-value=0.0055 Score=40.29 Aligned_cols=98 Identities=19% Similarity=0.270 Sum_probs=58.5
Q ss_pred EEECCEEECCCCCCHHHHHHHHHHHHCCCCEEEEEECCCCCCCCCEEEECCCCCHHHHCCHHHH-HHH--CCCCCCCCCH
Q ss_conf 9982300078887489999999985247315987604578777755871456788770421233-220--5763465201
Q gi|254780401|r 47 ICVGGFVMGGTGKTPTALAIAKAVIDKNLKPGFLSRGYGRKSRISFRVDLEKHSAYDVGDEPLL-LAR--RAVTIVTSDR 123 (338)
Q Consensus 47 I~VGNitvGGtGKTP~v~~l~~~l~~~g~~~~ilsRGYg~~~~~~~~v~~~~~~~~~vGDEp~l-la~--~~pv~V~~~R 123 (338)
..|| +-|+|||-++.-||.+++++|++|++++= ++..-.+=|.+. +++ .+|++++..-
T Consensus 161 l~vG---~nGvGKTTTiaKLA~~~k~~g~kv~l~a~----------------DTfRaaAveQL~~~a~~~~v~~~~~~~~ 221 (359)
T 2og2_A 161 MIVG---VNGGGKTTSLGKLAHRLKNEGTKVLMAAG----------------DTFRAAASDQLEIWAERTGCEIVVAEGD 221 (359)
T ss_dssp EEEC---CTTSCHHHHHHHHHHHHHHTTCCEEEECC----------------CCSCHHHHHHHHHHHHHHTCEEECCSSS
T ss_pred EEEC---CCCCCHHHHHHHHHHHHHHCCCCCEEEEC----------------CCCCHHHHHHHHHHHHHCCCCEEECCCC
T ss_conf 9978---88886461799999999966998605640----------------4232769999999986428842421576
Q ss_pred --------HHHHHHHCCCCCCEEEECCC-CCCCC---------C----------CCEEEEEEECCCCC
Q ss_conf --------22566410245747997183-22344---------1----------23069999618433
Q gi|254780401|r 124 --------KIGVQMLLQEGVDIIIMDDG-FHSAD---------L----------QADFSLIVVNSHRG 163 (338)
Q Consensus 124 --------~~~~~~~~~~~~diiIlDDG-fQh~~---------l----------~rdl~Ivl~d~~~~ 163 (338)
..+.+++...++|+||.|-+ -.|.. + .++-.++|+|+..+
T Consensus 222 ~~~~a~v~~~a~~~Ak~~~~DvvlIDTAGR~~~~~~lm~EL~ki~~~i~k~~~~~p~e~lLVlda~~g 289 (359)
T 2og2_A 222 KAKAATVLSKAVKRGKEEGYDVVLCDTSGRLHTNYSLMEELIACKKAVGKIVSGAPNEILLVLDGNTG 289 (359)
T ss_dssp SCCHHHHHHHHHHHHHHTTCSEEEEECCCCSSCCHHHHHHHHHHHHHHHHHSTTCCSEEEEEEEGGGG
T ss_pred CHHHHHHHHHHHHHHHHCCCCEEEEECCCCCCCCHHHHHHHHHHHHHHHCCCCCCCCEEEEEECCCCC
T ss_conf 22778888999999997799989984888785658899999999987631257898358998235658
No 12
>3e70_C DPA, signal recognition particle receptor; FTSY, SRP-GTPase, protein-targeting, transport protein; HET: GDP; 1.97A {Pyrococcus furiosus} PDB: 3dmd_B 3dm9_B*
Probab=95.91 E-value=0.013 Score=37.56 Aligned_cols=100 Identities=18% Similarity=0.250 Sum_probs=56.0
Q ss_pred EEEECCEEECCCCCCHHHHHHHHHHHHCCCCEEEEEECCCCCCCCCEEEECCCCCHHHHCCHHHHHHH--CCCCCCCCCH
Q ss_conf 89982300078887489999999985247315987604578777755871456788770421233220--5763465201
Q gi|254780401|r 46 VICVGGFVMGGTGKTPTALAIAKAVIDKNLKPGFLSRGYGRKSRISFRVDLEKHSAYDVGDEPLLLAR--RAVTIVTSDR 123 (338)
Q Consensus 46 VI~VGNitvGGtGKTP~v~~l~~~l~~~g~~~~ilsRGYg~~~~~~~~v~~~~~~~~~vGDEp~lla~--~~pv~V~~~R 123 (338)
+..|| +-|+|||-++.-||.+++++|++|++++=-- -...|. |.=-.+++ .+|+++..+.
T Consensus 132 i~~vG---~~G~GKTTt~aKlA~~~~~~g~kv~l~~~Dt------------~R~aA~---eQL~~~a~~~~v~~~~~~~~ 193 (328)
T 3e70_C 132 IMFVG---FNGSGKTTTIAKLANWLKNHGFSVVIAASDT------------FRAGAI---EQLEEHAKRIGVKVIKHSYG 193 (328)
T ss_dssp EEEEC---CTTSSHHHHHHHHHHHHHHTTCCEEEEEECC------------SSTTHH---HHHHHHHHHTTCEEECCCTT
T ss_pred EEEEC---CCCCCCCCHHHHHHHHHHHCCCCEEEEECCC------------CCHHHH---HHHHHHHHHHCCCEECCCCC
T ss_conf 99976---8778865438999999996699605763232------------450799---99999988735761467899
Q ss_pred H-------HHHHHHCCCCCCEEEECCC-CCCC-------------CCCCEEEEEEECCCCC
Q ss_conf 2-------2566410245747997183-2234-------------4123069999618433
Q gi|254780401|r 124 K-------IGVQMLLQEGVDIIIMDDG-FHSA-------------DLQADFSLIVVNSHRG 163 (338)
Q Consensus 124 ~-------~~~~~~~~~~~diiIlDDG-fQh~-------------~l~rdl~Ivl~d~~~~ 163 (338)
. +|+..+...+.|+||.|-+ -.|. .+.++.-++++|+..+
T Consensus 194 ~d~~~v~~~a~~~a~~~~~D~vlIDTaGR~~~~~~l~~el~~i~~~~~p~~~llV~da~~g 254 (328)
T 3e70_C 194 ADPAAVAYDAIQHAKARGIDVVLIDTAGRSETNRNLMDEMKKIARVTKPNLVIFVGDALAG 254 (328)
T ss_dssp CCHHHHHHHHHHHHHHHTCSEEEEEECCSCCTTTCHHHHHHHHHHHHCCSEEEEEEEGGGT
T ss_pred CCHHHHHHHHHHHHHHCCCCEEEECCCCCCCCCHHHHHHHHHHHHHCCCCEEEEECCCCCC
T ss_conf 9999999999999998699989867877761309999999999976299747762342122
No 13
>1zu4_A FTSY; GTPase, signal recognition particle, SRP, receptor, protein transport; 1.95A {Mycoplasma mycoides} PDB: 1zu5_A
Probab=95.71 E-value=0.011 Score=38.30 Aligned_cols=99 Identities=16% Similarity=0.231 Sum_probs=56.8
Q ss_pred EEEECCEEECCCCCCHHHHHHHHHHHHCCCCEEEEEECCCCCCCCCEEEECCCCCHHHHCCHHHH-HHHC-----CCCCC
Q ss_conf 89982300078887489999999985247315987604578777755871456788770421233-2205-----76346
Q gi|254780401|r 46 VICVGGFVMGGTGKTPTALAIAKAVIDKNLKPGFLSRGYGRKSRISFRVDLEKHSAYDVGDEPLL-LARR-----AVTIV 119 (338)
Q Consensus 46 VI~VGNitvGGtGKTP~v~~l~~~l~~~g~~~~ilsRGYg~~~~~~~~v~~~~~~~~~vGDEp~l-la~~-----~pv~V 119 (338)
+.-|| +-|+|||-++.-||.+++.+|++|++++-- +.+-.+-|.+. +++. .++++
T Consensus 108 illvG---~~G~GKTTTiaKLA~~~~~~g~kV~lva~D----------------t~R~aA~eQL~~~a~~~~~~~~~v~~ 168 (320)
T 1zu4_A 108 FMLVG---VNGTGKTTSLAKMANYYAELGYKVLIAAAD----------------TFRAGATQQLEEWIKTRLNNKVDLVK 168 (320)
T ss_dssp EEEES---STTSSHHHHHHHHHHHHHHTTCCEEEEECC----------------CSCHHHHHHHHHHHTTTSCTTEEEEC
T ss_pred EEEEC---CCCCCCHHHHHHHHHHHHHCCCCCEEEECH----------------HHHHHHHHHHHHHHHHHCCCCEEEEC
T ss_conf 99977---878870528999999998739974033312----------------11088999999998740687301222
Q ss_pred C----CCHH----HHHHHHCCCCCCEEEECCCC-CCCC---------C----------CCEEEEEEECCCCC
Q ss_conf 5----2012----25664102457479971832-2344---------1----------23069999618433
Q gi|254780401|r 120 T----SDRK----IGVQMLLQEGVDIIIMDDGF-HSAD---------L----------QADFSLIVVNSHRG 163 (338)
Q Consensus 120 ~----~~R~----~~~~~~~~~~~diiIlDDGf-Qh~~---------l----------~rdl~Ivl~d~~~~ 163 (338)
. .|-. ++..++...+.|+||.|=+= .|.. + .++-.++|+|+..+
T Consensus 169 ~~~~~~dp~~v~~~~~~~A~~~~~DvvlIDTaGR~~~d~~lm~el~ki~~~~~~~~~~~p~e~~LVlda~~g 240 (320)
T 1zu4_A 169 ANKLNADPASVVFDAIKKAKEQNYDLLLIDTAGRLQNKTNLMAELEKMNKIIQQVEKSAPHEVLLVIDATTG 240 (320)
T ss_dssp CSSTTCCHHHHHHHHHHHHHHTTCSEEEEECCCCGGGHHHHHHHHHHHHHHHHTTCTTCCSEEEEEEEGGGT
T ss_pred CCCCCCCHHHHHHHHHHHHHHCCCCEEEECCCCCCCCCHHHHHHHHHHHHHHHHCCCCCCCEEEEEEECCCC
T ss_conf 676788879999999999997799989963756676778899999999999874036899547998414568
No 14
>1vma_A Cell division protein FTSY; TM0570, structural genomics, JCSG, protein structure initiative, PSI, joint center for structural genomics; HET: CIT; 1.60A {Thermotoga maritima} SCOP: a.24.13.1 c.37.1.10
Probab=95.67 E-value=0.01 Score=38.33 Aligned_cols=79 Identities=27% Similarity=0.353 Sum_probs=49.1
Q ss_pred EEEECCEEECCCCCCHHHHHHHHHHHHCCCCEEEEEECCCCCCCCCEEEECCCCCHHHHCCHHHH-HHHC--CCCCCCCC
Q ss_conf 89982300078887489999999985247315987604578777755871456788770421233-2205--76346520
Q gi|254780401|r 46 VICVGGFVMGGTGKTPTALAIAKAVIDKNLKPGFLSRGYGRKSRISFRVDLEKHSAYDVGDEPLL-LARR--AVTIVTSD 122 (338)
Q Consensus 46 VI~VGNitvGGtGKTP~v~~l~~~l~~~g~~~~ilsRGYg~~~~~~~~v~~~~~~~~~vGDEp~l-la~~--~pv~V~~~ 122 (338)
+..|| +-|+|||-++.-||.+++++|++|++++=- +..-.+-|.+. +++. +|++..++
T Consensus 107 i~~vG---~~G~GKTTT~aKLA~~~~~~~~kv~lv~~D----------------t~R~aA~eQL~~~a~~~~v~~~~~~~ 167 (306)
T 1vma_A 107 IMVVG---VNGTGKTTSCGKLAKMFVDEGKSVVLAAAD----------------TFRAAAIEQLKIWGERVGATVISHSE 167 (306)
T ss_dssp EEEEC---CTTSSHHHHHHHHHHHHHHTTCCEEEEEEC----------------TTCHHHHHHHHHHHHHHTCEEECCST
T ss_pred EEEEC---CCCCCCCCHHHHHHHHHHHCCCEEEEEECC----------------CCCHHHHHHHHHHHHCCCCCCCCCCC
T ss_conf 99977---888984315999999998579848998435----------------66777999999988514877547788
Q ss_pred HHH-------HHHHHCCCCCCEEEECCC
Q ss_conf 122-------566410245747997183
Q gi|254780401|r 123 RKI-------GVQMLLQEGVDIIIMDDG 143 (338)
Q Consensus 123 R~~-------~~~~~~~~~~diiIlDDG 143 (338)
... ++..+...+.|+||.|-+
T Consensus 168 ~~d~~~i~~~~~~~a~~~~~D~vlIDTa 195 (306)
T 1vma_A 168 GADPAAVAFDAVAHALARNKDVVIIDTA 195 (306)
T ss_dssp TCCHHHHHHHHHHHHHHTTCSEEEEEEC
T ss_pred CCCHHHHHHHHHHHHHHCCCCEEEECCC
T ss_conf 9999999999999999869898996477
No 15
>3b9q_A Chloroplast SRP receptor homolog, alpha subunit CPFTSY; protein translocation, GTP-binding, nucleotide-binding, protein transport; 1.75A {Arabidopsis thaliana}
Probab=95.56 E-value=0.012 Score=37.86 Aligned_cols=99 Identities=19% Similarity=0.289 Sum_probs=58.7
Q ss_pred EEEECCEEECCCCCCHHHHHHHHHHHHCCCCEEEEEECCCCCCCCCEEEECCCCCHHHHCCHHHH-HHH--CCCCCCCCC
Q ss_conf 89982300078887489999999985247315987604578777755871456788770421233-220--576346520
Q gi|254780401|r 46 VICVGGFVMGGTGKTPTALAIAKAVIDKNLKPGFLSRGYGRKSRISFRVDLEKHSAYDVGDEPLL-LAR--RAVTIVTSD 122 (338)
Q Consensus 46 VI~VGNitvGGtGKTP~v~~l~~~l~~~g~~~~ilsRGYg~~~~~~~~v~~~~~~~~~vGDEp~l-la~--~~pv~V~~~ 122 (338)
+..|| +-|+|||-++.-||.+++.+|+++++++= ++..-.+=|-+. .+. .+|++++.+
T Consensus 103 i~~vG---~~G~GKTTTiaKLA~~~~~~~~kv~lva~----------------Dt~R~aA~eQL~~~a~~~~v~~~~~~~ 163 (302)
T 3b9q_A 103 IMIVG---VNGGGKTTSLGKLAHRLKNEGTKVLMAAG----------------DTFRAAASDQLEIWAERTGCEIVVAEG 163 (302)
T ss_dssp EEEEC---CTTSCHHHHHHHHHHHHHHTTCCEEEECC----------------CCSCHHHHHHHHHHHHHHTCEEECCC-
T ss_pred EEEEC---CCCCCHHHHHHHHHHHHHHCCCCCCEECC----------------CCCCHHHHHHHHHHHHHCCCCEEEECC
T ss_conf 99757---98886774999999999976998732115----------------657877999999998642653033036
Q ss_pred H--------HHHHHHHCCCCCCEEEECCC-CCCCC-------------C------CCEEEEEEECCCCC
Q ss_conf 1--------22566410245747997183-22344-------------1------23069999618433
Q gi|254780401|r 123 R--------KIGVQMLLQEGVDIIIMDDG-FHSAD-------------L------QADFSLIVVNSHRG 163 (338)
Q Consensus 123 R--------~~~~~~~~~~~~diiIlDDG-fQh~~-------------l------~rdl~Ivl~d~~~~ 163 (338)
. ..+.+.+...++|+||.|-+ -.|.. + .++-.++++|+..+
T Consensus 164 ~~~~~~~~~~~~~~~a~~~~~D~ilIDTaGR~~~~~~lm~el~~i~~~~~k~~~~~p~e~~LVlda~~g 232 (302)
T 3b9q_A 164 DKAKAATVLSKAVKRGKEEGYDVVLCDTSGRLHTNYSLMEELIACKKAVGKIVSGAPNEILLVLDGNTG 232 (302)
T ss_dssp -CCCHHHHHHHHHHHHHHTTCSEEEECCCCCSSCCHHHHHHHHHHHHHHHTTSTTCCSEEEEEEEGGGG
T ss_pred CCCHHHHHHHHHHHHHHHCCCCEEEEECCCCCCCCHHHHHHHHHHHHHHHCCCCCCCCEEEEEEECCCC
T ss_conf 520688999999999997799999984888785658899999999999861268898568998405668
No 16
>2v3c_C SRP54, signal recognition 54 kDa protein; nucleotide-binding, signal recognition particle, GTP-binding, RNA-binding; 2.50A {Methanocaldococcus jannaschii}
Probab=95.49 E-value=0.019 Score=36.52 Aligned_cols=168 Identities=19% Similarity=0.249 Sum_probs=84.4
Q ss_pred CCEEEECCEEECCCCCCHHHHHHHHHHHHCCCCEEEEEECCCCCCCCCEEEECCCCCHHHHCCHHHHHHHC--CCCCCCC
Q ss_conf 98899823000788874899999999852473159876045787777558714567887704212332205--7634652
Q gi|254780401|r 44 IPVICVGGFVMGGTGKTPTALAIAKAVIDKNLKPGFLSRGYGRKSRISFRVDLEKHSAYDVGDEPLLLARR--AVTIVTS 121 (338)
Q Consensus 44 ~pVI~VGNitvGGtGKTP~v~~l~~~l~~~g~~~~ilsRGYg~~~~~~~~v~~~~~~~~~vGDEp~lla~~--~pv~V~~ 121 (338)
.-|..|| +-|+|||.++.-||.+++++|++|++++=- +-...| -|.-..++.. +|++...
T Consensus 100 ~VIllvG---l~GsGKTTT~aKLA~~l~~~g~kv~lvaaD------------t~R~aA---~eQL~~~a~~~~v~~~~~~ 161 (432)
T 2v3c_C 100 NVILLVG---IQGSGKTTTAAKLARYIQKRGLKPALIAAD------------TYRPAA---YEQLKQLAEKIHVPIYGDE 161 (432)
T ss_dssp CCEEEEC---CSSSSTTHHHHHHHHHHHHHHCCEEEECCS------------CCCTTG---GGSSHHHHHHSSCCEECCS
T ss_pred EEEEEEC---CCCCCCHHHHHHHHHHHHHCCCCCEEEEEC------------CCHHHH---HHHHHHHHHCCCCCEECCC
T ss_conf 6999857---987762148999999999779974244210------------336889---9999999723797577786
Q ss_pred C----HHHHHHHHC--CCCCCEEEECCCC-C-------------CCCCCCEEEEEEECCCCCCCCCCCCCCHHHHHCCHH
Q ss_conf 0----122566410--2457479971832-2-------------344123069999618433566553761365210025
Q gi|254780401|r 122 D----RKIGVQMLL--QEGVDIIIMDDGF-H-------------SADLQADFSLIVVNSHRGLGNGLVFPAGPLRVPLSR 181 (338)
Q Consensus 122 ~----R~~~~~~~~--~~~~diiIlDDGf-Q-------------h~~l~rdl~Ivl~d~~~~~gn~~llPaGpLREp~~~ 181 (338)
. -...+..+. ..+.|+||.|-+= . ...+.++..++|+|+.-+ ..-+--+ +.+..
T Consensus 162 ~~~~~p~~i~~~a~~~~~~~DvviIDTAGRl~~d~~Lm~EL~~i~~~~~P~e~llV~Da~~G--q~a~~~a----~~F~~ 235 (432)
T 2v3c_C 162 TRTKSPVDIVKEGMEKFKKADVLIIDTAGRHKEEKGLLEEMKQIKEITNPDEIILVIDGTIG--QQAGIQA----KAFKE 235 (432)
T ss_dssp SSCCSSSTTHHHHHHTTSSCSEEEEECCCSCSSHHHHHHHHHHTTSSSCCSEEEEEEEGGGG--GGHHHHH----HHHHT
T ss_pred CCCCCHHHHHHHHHHHHHCCCEEEEECCCCCCCHHHHHHHHHHHHHHCCCCEEEEECCCCCC--HHHHHHH----HHHHH
T ss_conf 66540899999999996269989986666551207799999999876297503210212111--4689989----99999
Q ss_pred HHHHHHHHHHCCCCHHH-------HHHHCCCCHHHHHHHHCCCCCCCCCEEEEEECCCCHHHHHHHHHHHC
Q ss_conf 56651454420441245-------77631350111222201321116863898741553578999887401
Q gi|254780401|r 182 QLSYVDAILYVGNKKNV-------ISSIKNKSVYFAKLKPRLTFDLSGKKVLAFSGIADTEKFFTTVRQLG 245 (338)
Q Consensus 182 ~l~rad~vi~~~~~~~~-------~~~~~~~~i~~~~~~~~~~~~l~~k~v~afsGIa~P~~F~~~L~~~g 245 (338)
++...+-+|+|+-+... .....+.|+.|...= +...|+. . =+|++|.+.|-.+|
T Consensus 236 ~~~~i~giIlTKlDg~akgG~aLSi~~~t~~PI~fiG~G-Ek~~DLe-----~----F~p~~~~~riLGmG 296 (432)
T 2v3c_C 236 AVGEIGSIIVTKLDGSAKGGGALSAVAETKAPIKFIGIG-EGIDDLE-----P----FDPKKFISRLLGMG 296 (432)
T ss_dssp TSCSCEEEEEECSSSCSTTHHHHHHHHHSSCCEEEECCS-SSSSSCC-----B----CCHHHHHHHHTCSS
T ss_pred HHCCCCCEEEEEECCCCCCHHHHHHHHHHCCCEEEEECC-CCCCCCC-----C----CCHHHHHHHHCCCC
T ss_conf 852355257741036775249989999978994898517-9855687-----7----69899999872896
No 17
>1g3q_A MIND ATPase, cell division inhibitor; alpha-beta-alpha layered, protein-ADP complex, cell cycle, hydrolase; HET: ADP; 2.00A {Pyrococcus furiosus} SCOP: c.37.1.10 PDB: 1g3r_A* 1ion_A*
Probab=95.41 E-value=0.012 Score=37.78 Aligned_cols=37 Identities=27% Similarity=0.277 Sum_probs=33.2
Q ss_pred CEEEECCEEECCCCCCHHHHHHHHHHHHCCCCEEEEEE
Q ss_conf 88998230007888748999999998524731598760
Q gi|254780401|r 45 PVICVGGFVMGGTGKTPTALAIAKAVIDKNLKPGFLSR 82 (338)
Q Consensus 45 pVI~VGNitvGGtGKTP~v~~l~~~l~~~g~~~~ilsR 82 (338)
.||+|.|. -||+|||-++.-||..|.++|++|.++-=
T Consensus 3 kvIav~s~-kGGvGKTT~a~nLA~~la~~g~~VlliD~ 39 (237)
T 1g3q_A 3 RIISIVSG-KGGTGKTTVTANLSVALGDRGRKVLAVDG 39 (237)
T ss_dssp EEEEEECS-STTSSHHHHHHHHHHHHHHTTCCEEEEEC
T ss_pred EEEEEECC-CCCCCHHHHHHHHHHHHHHCCCCEEEEEC
T ss_conf 39999899-99970999999999999978998999979
No 18
>2oze_A ORF delta'; para, walker type atpases, DNA segregation, PSM19035, plasmid, DNA binding protein; HET: AGS EPE; 1.83A {Streptococcus pyogenes}
Probab=95.26 E-value=0.016 Score=37.08 Aligned_cols=39 Identities=28% Similarity=0.238 Sum_probs=33.9
Q ss_pred CCCCEEEECCEEECCCCCCHHHHHHHHHHHHCCCCEEEEE
Q ss_conf 8898899823000788874899999999852473159876
Q gi|254780401|r 42 APIPVICVGGFVMGGTGKTPTALAIAKAVIDKNLKPGFLS 81 (338)
Q Consensus 42 ~~~pVI~VGNitvGGtGKTP~v~~l~~~l~~~g~~~~ils 81 (338)
-..-||.|+|. =||+|||-++.-||..|..+|++|.+|=
T Consensus 34 ~~~~ii~v~s~-KGGvGKTT~a~nlA~~LA~~G~rVllID 72 (298)
T 2oze_A 34 NEAIVILNNYF-KGGVGKSKLSTMFAYLTDKLNLKVLMID 72 (298)
T ss_dssp CSCEEEEECCS-SSSSSHHHHHHHHHHHHHHTTCCEEEEE
T ss_pred CCEEEEEECCC-CCCCCHHHHHHHHHHHHHHCCCCEEEEE
T ss_conf 86199997589-8981899999999999997799089994
No 19
>3cwq_A Para family chromosome partitioning protein; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; HET: ADP; 2.47A {Synechocystis SP}
Probab=95.17 E-value=0.015 Score=37.12 Aligned_cols=34 Identities=29% Similarity=0.495 Sum_probs=28.9
Q ss_pred EEEECCEEECCCCCCHHHHHHHHHHHHCCCCEEEEE
Q ss_conf 899823000788874899999999852473159876
Q gi|254780401|r 46 VICVGGFVMGGTGKTPTALAIAKAVIDKNLKPGFLS 81 (338)
Q Consensus 46 VI~VGNitvGGtGKTP~v~~l~~~l~~~g~~~~ils 81 (338)
||+|.|- =||.|||-++..||..|.++| +|+++-
T Consensus 2 vI~v~s~-KGGvGKTT~a~nLA~~La~~G-kVlliD 35 (209)
T 3cwq_A 2 IITVASF-KGGVGKTTTAVHLSAYLALQG-ETLLID 35 (209)
T ss_dssp EEEEEES-STTSSHHHHHHHHHHHHHTTS-CEEEEE
T ss_pred EEEEECC-CCCCHHHHHHHHHHHHHHHCC-CEEEEE
T ss_conf 8999829-998749999999999999689-989998
No 20
>1o5z_A Folylpolyglutamate synthase/dihydrofolate synthase; TM0166, structural genomics, JCSG, PSI, protein structure initiative; 2.10A {Thermotoga maritima} SCOP: c.59.1.2 c.72.2.2
Probab=95.15 E-value=0.13 Score=30.64 Aligned_cols=58 Identities=19% Similarity=0.203 Sum_probs=40.3
Q ss_pred HHHHCCCCCCCCCEEEECCEEECCCCCCHHHHHHHHHHHHCCCCEEEEEECCCCCCCCCEEEE
Q ss_conf 974046433889889982300078887489999999985247315987604578777755871
Q gi|254780401|r 33 LMKRGQRLHAPIPVICVGGFVMGGTGKTPTALAIAKAVIDKNLKPGFLSRGYGRKSRISFRVD 95 (338)
Q Consensus 33 ~~~~~~~~~~~~pVI~VGNitvGGtGKTP~v~~l~~~l~~~g~~~~ilsRGYg~~~~~~~~v~ 95 (338)
+..++.+.+ ..|||. ++|=-|||-++.+|+..|++.|+++|..+-.+-.....-+.+.
T Consensus 42 l~~lg~P~~-~l~vI~----VtGTNGKtSt~~~l~~iL~~~g~kvG~~tSp~l~~~~Eri~in 99 (442)
T 1o5z_A 42 LSKLGNPHL-EYKTIH----IGGTNGKGSVANMVSNILVSQGYRVGSYYSPHLSTFRERIRLN 99 (442)
T ss_dssp HHHTTCGGG-SSEEEE----EECSSSHHHHHHHHHHHHHHHTCCEEEECCSCSSCGGGGEEET
T ss_pred HHHCCCHHH-HCCEEE----EECCCCHHHHHHHHHHHHHHCCCCEEEECCCCCCCCCEEEEEC
T ss_conf 997299076-099899----9787247999999999999879988997887627420189999
No 21
>1w78_A FOLC bifunctional protein; DHFS, dihydrofolate synthase, synthase, ATP-binding, folate biosynthesis, ligase, multifunctional enzyme; HET: KCX PD8 ADP; 1.82A {Escherichia coli} PDB: 1w7k_A*
Probab=95.12 E-value=0.13 Score=30.53 Aligned_cols=114 Identities=17% Similarity=0.139 Sum_probs=60.1
Q ss_pred HHHHHHHHCCCCCCCCCEEEECCEEECCCCCCHHHHHHHHHHHHCCCCEEEEEECCCCCCCCCEEEECCCCCHHHHC---
Q ss_conf 99999740464338898899823000788874899999999852473159876045787777558714567887704---
Q gi|254780401|r 29 ISSKLMKRGQRLHAPIPVICVGGFVMGGTGKTPTALAIAKAVIDKNLKPGFLSRGYGRKSRISFRVDLEKHSAYDVG--- 105 (338)
Q Consensus 29 ~~~~~~~~~~~~~~~~pVI~VGNitvGGtGKTP~v~~l~~~l~~~g~~~~ilsRGYg~~~~~~~~v~~~~~~~~~vG--- 105 (338)
+..++..++.+ +.+.|||. ++|=-|||-++.+|+..|++.|++++..+--+-......+......-+..+..
T Consensus 35 ~~~~~~~l~~p-~~~~~vI~----VTGTNGKTTT~~li~~iL~~~G~~vg~~~sp~l~~~~eri~~~~~~i~~~~~~~~~ 109 (422)
T 1w78_A 35 VSLVAARLGVL-KPAPFVFT----VAGTNGKGTTCRTLESILMAAGYKVGVYSSPHLVRYTERVRVQGQELPESAHTASF 109 (422)
T ss_dssp HHHHHHHHTCS-SCSSEEEE----EECSSCHHHHHHHHHHHHHHTTCCEEEECCSCSSCGGGGEEETTEECCHHHHHHHH
T ss_pred HHHHHHHCCCC-CCCCCEEE----EECCCCHHHHHHHHHHHHHHCCCCEEEECCCCCCCCCCEEEECCEECCHHHHHHHH
T ss_conf 99999974996-21598899----98882189999999999998899889979877260442389998743568766577
Q ss_pred CHHHHHHHC-CCCCCCCCHHHHHHHHCCCCCCEEEECCCCCCC
Q ss_conf 212332205-763465201225664102457479971832234
Q gi|254780401|r 106 DEPLLLARR-AVTIVTSDRKIGVQMLLQEGVDIIIMDDGFHSA 147 (338)
Q Consensus 106 DEp~lla~~-~pv~V~~~R~~~~~~~~~~~~diiIlDDGfQh~ 147 (338)
+|....... .+....-....+.......++|.+++..|+.+.
T Consensus 110 ~~~~~~~~~~~~~~~~~~~~~a~~~f~~~~~d~~~~e~~~~~~ 152 (422)
T 1w78_A 110 AEIESARGDISLTYFEYGTLSALWLFKQAQLDVVILEVGLGGR 152 (422)
T ss_dssp HHHHHHTTTCCCCHHHHHHHHHHHHHHHHTCSEEEEECSSSST
T ss_pred HHHHHHHCCCCCCHHHHHHHHHHHHHHHCCCCEEEEECCHHHH
T ss_conf 8888873378875678999999999876599879984463776
No 22
>3ez2_A Plasmid partition protein A; type IA, DNA binding, winged-HTH, P partition, DNA binding protein; HET: ADP EPE; 2.05A {Escherichia coli} PDB: 3ez6_A* 3ez7_A
Probab=95.08 E-value=0.032 Score=34.84 Aligned_cols=38 Identities=24% Similarity=0.382 Sum_probs=31.1
Q ss_pred CCCCEEEECCEEECCCCCCHHHHHHHHHHHH------CCCCEEEE
Q ss_conf 8898899823000788874899999999852------47315987
Q gi|254780401|r 42 APIPVICVGGFVMGGTGKTPTALAIAKAVID------KNLKPGFL 80 (338)
Q Consensus 42 ~~~pVI~VGNitvGGtGKTP~v~~l~~~l~~------~g~~~~il 80 (338)
-+.-||+|.|. =||+|||-++.-||..|.. +|++|.+|
T Consensus 106 ~~~~vIav~n~-KGGvGKTTttv~LA~~La~~~~la~~g~RVLlI 149 (398)
T 3ez2_A 106 SEAYVIFISNL-KGGVSKTVSTVSLAHAMRAHPHLLMEDLRILVI 149 (398)
T ss_dssp CSCEEEEECCS-SSSSSHHHHHHHHHHHHHHCTTTGGGCCCEEEE
T ss_pred CCCEEEEEECC-CCCCCHHHHHHHHHHHHHHHHHHHHCCCCEEEE
T ss_conf 98769999788-898748999999999999720666469955985
No 23
>1rj9_A FTSY, signal recognition protein; SRP-GTPase domain, heterodimer, nucleotide twinning, protein-protein complex, protein transport; HET: GCP; 1.90A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 2q9c_A* 2q9b_A* 2q9a_A* 1okk_D* 2iyl_D* 2cnw_D* 2j7p_D*
Probab=95.01 E-value=0.024 Score=35.77 Aligned_cols=99 Identities=18% Similarity=0.221 Sum_probs=58.2
Q ss_pred EEEECCEEECCCCCCHHHHHHHHHHHHCCCCEEEEEECCCCCCCCCEEEECCCCCHHHHCCHHHH-HHH--CCCCCCCCC
Q ss_conf 89982300078887489999999985247315987604578777755871456788770421233-220--576346520
Q gi|254780401|r 46 VICVGGFVMGGTGKTPTALAIAKAVIDKNLKPGFLSRGYGRKSRISFRVDLEKHSAYDVGDEPLL-LAR--RAVTIVTSD 122 (338)
Q Consensus 46 VI~VGNitvGGtGKTP~v~~l~~~l~~~g~~~~ilsRGYg~~~~~~~~v~~~~~~~~~vGDEp~l-la~--~~pv~V~~~ 122 (338)
+.-||- =|+|||-++.-||.+++.+|.++++++=- +.+-.|-|.+- +++ .+|+++..+
T Consensus 105 i~lvG~---~G~GKTTt~aKlA~~~~~~~~kv~li~~D----------------t~R~ga~eQL~~~a~~~~v~~~~~~~ 165 (304)
T 1rj9_A 105 VLVVGV---NGVGKTTTIAKLGRYYQNLGKKVMFCAGD----------------TFRAAGGTQLSEWGKRLSIPVIQGPE 165 (304)
T ss_dssp EEEECS---TTSSHHHHHHHHHHHHHTTTCCEEEECCC----------------CSSTTTTHHHHHHHHHHTCCEECCCT
T ss_pred EEEECC---CCCCCCHHHHHHHHHHHHHCCCCEEEECC----------------CCCCHHHHHHHHHCCCCCCEEEECCC
T ss_conf 995246---67774118999999986511540034214----------------20000678999856556850796688
Q ss_pred HH---HHHHH----HCCCCCCEEEECCC-CCCCCC-------------------CCEEEEEEECCCCC
Q ss_conf 12---25664----10245747997183-223441-------------------23069999618433
Q gi|254780401|r 123 RK---IGVQM----LLQEGVDIIIMDDG-FHSADL-------------------QADFSLIVVNSHRG 163 (338)
Q Consensus 123 R~---~~~~~----~~~~~~diiIlDDG-fQh~~l-------------------~rdl~Ivl~d~~~~ 163 (338)
-. ..++. +...+.|+|+.|-+ ..|..- .++-.++|+|+..+
T Consensus 166 ~~d~~~~~~~~~~~~~~~~~d~iliDTaGr~~~~~~l~~el~~~~~~~~~~~~~~p~e~~LVl~a~~~ 233 (304)
T 1rj9_A 166 GTDSAALAYDAVQAMKARGYDLLFVDTAGRLHTKHNLMEELKKVKRAIAKADPEEPKEVWLVLDAVTG 233 (304)
T ss_dssp TCCHHHHHHHHHHHHHHHTCSEEEECCCCCCTTCHHHHHHHHHHHHHHHHHCTTCCSEEEEEEETTBC
T ss_pred CCHHHHHHHHHHHHHHHCCCCEEEECCHHCCCCHHHHHHHHHHHHHHHHHCCCCCCCEEEEEEECCCC
T ss_conf 72078778999999998699989975043031037788777888877653267898558999611038
No 24
>3fkq_A NTRC-like two-domain protein; RER070207001320, structural genomics, joint center for structural genomics, JCSG, protein structure initiative; HET: ATP 2PE; 2.10A {Eubacterium rectale}
Probab=94.85 E-value=0.025 Score=35.64 Aligned_cols=42 Identities=24% Similarity=0.184 Sum_probs=35.6
Q ss_pred CCCCCCEEEECCEEECCCCCCHHHHHHHHHHHHCCCCEEEEEE
Q ss_conf 3388988998230007888748999999998524731598760
Q gi|254780401|r 40 LHAPIPVICVGGFVMGGTGKTPTALAIAKAVIDKNLKPGFLSR 82 (338)
Q Consensus 40 ~~~~~pVI~VGNitvGGtGKTP~v~~l~~~l~~~g~~~~ilsR 82 (338)
...+..||+|.+- .||+|||-++.-||..|.++|++|.++.=
T Consensus 139 ~~~~~kvI~V~S~-kGGvGKTT~A~~LA~~LA~~g~kVLliD~ 180 (373)
T 3fkq_A 139 ENDKSSVVIFTSP-CGGVGTSTVAAACAIAHANMGKKVFYLNI 180 (373)
T ss_dssp CTTSCEEEEEECS-STTSSHHHHHHHHHHHHHHHTCCEEEEEC
T ss_pred CCCCCEEEEEECC-CCCCHHHHHHHHHHHHHHHCCCEEEEEEC
T ss_conf 6899879999899-99951999999999999838995999938
No 25
>3iqw_A Tail-anchored protein targeting factor GET3; ATPase, Zn binding, protein transport; HET: ANP; 3.00A {Chaetomium thermophilum} PDB: 3iqx_A* 3ibg_A*
Probab=94.67 E-value=0.019 Score=36.56 Aligned_cols=38 Identities=34% Similarity=0.434 Sum_probs=32.0
Q ss_pred CCEEEECCEEECCCCCCHHHHHHHHHHHHCCCCEEEEEEC
Q ss_conf 9889982300078887489999999985247315987604
Q gi|254780401|r 44 IPVICVGGFVMGGTGKTPTALAIAKAVIDKNLKPGFLSRG 83 (338)
Q Consensus 44 ~pVI~VGNitvGGtGKTP~v~~l~~~l~~~g~~~~ilsRG 83 (338)
..+|-|.. =||+|||-++..||-.|.++|++|.+++--
T Consensus 16 ~r~if~sG--KGGVGKTT~aanlA~~lA~~G~rVLlvD~D 53 (334)
T 3iqw_A 16 LRWIFVGG--KGGVGKTTTSCSLAIQLAKVRRSVLLLSTD 53 (334)
T ss_dssp CCEEEEEC--STTSSHHHHHHHHHHHHTTSSSCEEEEECC
T ss_pred CEEEEEEC--CCCCHHHHHHHHHHHHHHHCCCCEEEEECC
T ss_conf 56999979--997719999999999999789948999389
No 26
>2z83_A Helicase/nucleoside triphosphatase; hydrolase, membrane, nucleotide-binding, RNA replication, transmembrane, viral protein; 1.80A {Japanese encephalitis virus} PDB: 2v8o_A 2qeq_A
Probab=94.65 E-value=0.052 Score=33.36 Aligned_cols=53 Identities=13% Similarity=0.174 Sum_probs=31.8
Q ss_pred CCEEEEEE-CCCCHHHHHHHHHHHCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCC-CEEEECH
Q ss_conf 86389874-15535789998874010000122143323489899999999756479-8799854
Q gi|254780401|r 222 GKKVLAFS-GIADTEKFFTTVRQLGALIEQCYSFGDHAHLSDKKIAYLLDQAQQKG-LILVTTA 283 (338)
Q Consensus 222 ~k~v~afs-GIa~P~~F~~~L~~~g~~i~~~~~fpDHh~ys~~dl~~i~~~a~~~~-~~iiTTE 283 (338)
+.+++.|| ++..=+.+.+.|++.|+++... |-.-..++.+ +.++.. ..||+|.
T Consensus 190 ~gk~LVFv~s~~~ae~la~~L~~~g~~v~~l-----h~~l~~~~~~----~~~~g~~~vlVATd 244 (459)
T 2z83_A 190 AGKTVWFVASVKMGNEIAMCLQRAGKKVIQL-----NRKSYDTEYP----KCKNGDWDFVITTD 244 (459)
T ss_dssp CSCEEEECSCHHHHHHHHHHHHHTTCCEEEE-----STTCCCCCGG----GSSSCCCSEEEESS
T ss_pred CCCEEEEECCHHHHHHHHHHHHHCCCCEEEE-----CCCCCHHHHH----HHHCCCCCEEEECH
T ss_conf 8999999797999999999998689909996-----8989899996----53379943999824
No 27
>3ez9_A Para; DNA binding, winged-HTH, partition, biosynthetic protein; 2.80A {Salmonella enterica subsp} PDB: 3ezf_A
Probab=94.62 E-value=0.021 Score=36.17 Aligned_cols=40 Identities=28% Similarity=0.361 Sum_probs=33.5
Q ss_pred CCCCCEEEECCEEECCCCCCHHHHHHHHHHH------HCCCCEEEEE
Q ss_conf 3889889982300078887489999999985------2473159876
Q gi|254780401|r 41 HAPIPVICVGGFVMGGTGKTPTALAIAKAVI------DKNLKPGFLS 81 (338)
Q Consensus 41 ~~~~pVI~VGNitvGGtGKTP~v~~l~~~l~------~~g~~~~ils 81 (338)
.-...||+|.|. =||+|||-++.-||..|. ++|++|.+|-
T Consensus 108 ~~~~~VIav~n~-KGGvGKTT~avnLA~~LA~~~~~~~~G~rVLlID 153 (403)
T 3ez9_A 108 HKSPYVIFVVNL-KGGVSKTVSTVTLAHALRVHQDLLRHDLRILVID 153 (403)
T ss_dssp SCSCEEEEECCC---------CHHHHHHHHHSCGGGGGGCCCEEEEE
T ss_pred CCCCEEEEEECC-CCCCHHHHHHHHHHHHHHHCCHHHHCCCCEEEEE
T ss_conf 999769999681-7720799999999999984315665899689997
No 28
>2px0_A Flagellar biosynthesis protein FLHF; SRP GTPase, flagellum, protein transport, biosynthetic protein; HET: GNP; 3.00A {Bacillus subtilis} PDB: 2px3_A*
Probab=94.57 E-value=0.078 Score=32.13 Aligned_cols=79 Identities=25% Similarity=0.247 Sum_probs=47.4
Q ss_pred EE-EECCEEECCCCCCHHHHHHHHH-HHHCCCCEEEEEECCCCCCCCCEEEECCCCCHHHHCCHHH-HHHH--CCCCCCC
Q ss_conf 89-9823000788874899999999-8524731598760457877775587145678877042123-3220--5763465
Q gi|254780401|r 46 VI-CVGGFVMGGTGKTPTALAIAKA-VIDKNLKPGFLSRGYGRKSRISFRVDLEKHSAYDVGDEPL-LLAR--RAVTIVT 120 (338)
Q Consensus 46 VI-~VGNitvGGtGKTP~v~~l~~~-l~~~g~~~~ilsRGYg~~~~~~~~v~~~~~~~~~vGDEp~-lla~--~~pv~V~ 120 (338)
|| .||.= |+|||-++.-||.+ +.++|.+|++++=- +....+ -|.+ .+++ ..|+.+.
T Consensus 107 vI~lvGpt---GvGKTTtiaKLAa~~~~~~~~~v~lit~D------------t~R~~A----~eQLk~~a~~l~vp~~~~ 167 (296)
T 2px0_A 107 YIVLFGST---GAGKTTTLAKLAAISMLEKHKKIAFITTD------------TYRIAA----VEQLKTYAELLQAPLEVC 167 (296)
T ss_dssp EEEEEEST---TSSHHHHHHHHHHHHHHTTCCCEEEEECC------------CSSTTH----HHHHHHHHTTTTCCCCBC
T ss_pred EEEEECCC---CCCHHHHHHHHHHHHHHHCCCCEEEEECC------------CCCHHH----HHHHHHHHHHCCCCCCEE
T ss_conf 89998999---98889999999999999579906999807------------997689----999999997417985045
Q ss_pred CCHHHHHHHHCC-CCCCEEEECCC
Q ss_conf 201225664102-45747997183
Q gi|254780401|r 121 SDRKIGVQMLLQ-EGVDIIIMDDG 143 (338)
Q Consensus 121 ~~R~~~~~~~~~-~~~diiIlDDG 143 (338)
.+...-...+.. .+.|+|+.|=+
T Consensus 168 ~~~~~l~~a~~~~~~~d~vlIDTa 191 (296)
T 2px0_A 168 YTKEEFQQAKELFSEYDHVFVDTA 191 (296)
T ss_dssp SSHHHHHHHHHHGGGSSEEEEECC
T ss_pred ECHHHHHHHHHHHCCCCEEEEECC
T ss_conf 556669999987224888999688
No 29
>1hyq_A MIND, cell division inhibitor (MIND-1); MINC, FTSZ, bacterial cell division, cell cycle; 2.60A {Archaeoglobus fulgidus} SCOP: c.37.1.10
Probab=94.56 E-value=0.027 Score=35.36 Aligned_cols=38 Identities=24% Similarity=0.288 Sum_probs=33.2
Q ss_pred CCEEEECCEEECCCCCCHHHHHHHHHHHHCCCCEEEEEE
Q ss_conf 988998230007888748999999998524731598760
Q gi|254780401|r 44 IPVICVGGFVMGGTGKTPTALAIAKAVIDKNLKPGFLSR 82 (338)
Q Consensus 44 ~pVI~VGNitvGGtGKTP~v~~l~~~l~~~g~~~~ilsR 82 (338)
+.||.|.+- -||+|||-++.-||..|.+.|++|+++-=
T Consensus 2 ~kvI~v~s~-KGGvGKTtia~nlA~~la~~g~kVlliD~ 39 (263)
T 1hyq_A 2 VRTITVASG-KGGTGKTTITANLGVALAQLGHDVTIVDA 39 (263)
T ss_dssp CEEEEEEES-SSCSCHHHHHHHHHHHHHHTTCCEEEEEC
T ss_pred CEEEEEECC-CCCCHHHHHHHHHHHHHHHCCCCEEEEEC
T ss_conf 769999899-99871999999999999968998999958
No 30
>2woo_A ATPase GET3; tail-anchored, membrane protein, targeting factor, endoplasmic reticulum, TRC40, ATP-binding, golgi apparatus; 3.01A {Schizosaccharomyces pombe}
Probab=94.51 E-value=0.023 Score=35.91 Aligned_cols=37 Identities=30% Similarity=0.337 Sum_probs=30.8
Q ss_pred CCEEEECCEEECCCCCCHHHHHHHHHHHHCCCCEEEEEE
Q ss_conf 988998230007888748999999998524731598760
Q gi|254780401|r 44 IPVICVGGFVMGGTGKTPTALAIAKAVIDKNLKPGFLSR 82 (338)
Q Consensus 44 ~pVI~VGNitvGGtGKTP~v~~l~~~l~~~g~~~~ilsR 82 (338)
-.+|.++ -=||+|||-++..+|..|.++|++|.++|=
T Consensus 19 ~r~i~~~--GKGGVGKTT~a~~lA~~lA~~G~rVLlvd~ 55 (329)
T 2woo_A 19 LKWIFVG--GKGGVGKTTTSCSLAIQMSKVRSSVLLIST 55 (329)
T ss_dssp CCEEEEE--CSSSSSHHHHHHHHHHHHHTSSSCEEEEEC
T ss_pred CEEEEEE--CCCCCCHHHHHHHHHHHHHHCCCCEEEEEC
T ss_conf 1699996--998682999999999999968991899958
No 31
>3nrs_A Dihydrofolate:folylpolyglutamate synthetase; structural genomics, center for structural genomics of infec diseases, csgid; HET: TLA MES; 1.80A {Yersinia pestis} PDB: 3n2a_A*
Probab=94.49 E-value=0.3 Score=27.93 Aligned_cols=142 Identities=14% Similarity=0.114 Sum_probs=70.5
Q ss_pred HHHHHHHCCCCCCCCCEEEECCEEECCCCCCHHHHHHHHHHHHCCCCEEEEEECCCCCCCCCEEEECCCCCHHHHC---C
Q ss_conf 9999740464338898899823000788874899999999852473159876045787777558714567887704---2
Q gi|254780401|r 30 SSKLMKRGQRLHAPIPVICVGGFVMGGTGKTPTALAIAKAVIDKNLKPGFLSRGYGRKSRISFRVDLEKHSAYDVG---D 106 (338)
Q Consensus 30 ~~~~~~~~~~~~~~~pVI~VGNitvGGtGKTP~v~~l~~~l~~~g~~~~ilsRGYg~~~~~~~~v~~~~~~~~~vG---D 106 (338)
..+...++.+ .-+.|||.| +|=.|||-++.+++..|++.|+++|..+--|=.....-+.+....-+..+.- .
T Consensus 39 ~~ll~~lg~P-~~~~~vI~V----tGTNGKtSt~~~i~~iL~~~g~kvG~~tSPhl~~~~Eri~~~~~~i~~~~~~~~~~ 113 (437)
T 3nrs_A 39 KQVAERLDLL-KPAPKIFTV----AGTNGKGTTCCTLEAILLAAGLRVGVYSSPHLLRYTERVRIQGQELSEAEHSHSFA 113 (437)
T ss_dssp HHHHHHTTCS-CSSSEEEEE----ECSSSHHHHHHHHHHHHHHTTCCEEEECCCCSSCGGGGEEETTEECCHHHHHHHHH
T ss_pred HHHHHHCCCC-CCCCCEEEE----ECCCCHHHHHHHHHHHHHHCCCCEEEECCCCCCCCCCEEEECCEECCHHHHHHHHH
T ss_conf 9999972993-003988999----77830899999999999987998799788841501236998996426899878876
Q ss_pred HHHHHHHC-CCCCCCCCHHHHHHHHCCCCCCEEEECCCCC---CCCCCCEEEEEEECCCCCCCCCCCCCCHHHHHCC
Q ss_conf 12332205-7634652012256641024574799718322---3441230699996184335665537613652100
Q gi|254780401|r 107 EPLLLARR-AVTIVTSDRKIGVQMLLQEGVDIIIMDDGFH---SADLQADFSLIVVNSHRGLGNGLVFPAGPLRVPL 179 (338)
Q Consensus 107 Ep~lla~~-~pv~V~~~R~~~~~~~~~~~~diiIlDDGfQ---h~~l~rdl~Ivl~d~~~~~gn~~llPaGpLREp~ 179 (338)
|..-.... .+....--...+..+..+.++|++|+.-|+. ++--.-+.++.++. .++.+++=-.|+-.|.+
T Consensus 114 ~~~~~~~~~~~~~~e~~~~~a~~~~~~~~~d~~i~E~g~gg~~d~t~~~~~~~~viT---nI~~DH~d~lg~t~~~I 187 (437)
T 3nrs_A 114 QIEAGRGDISLTYFEFGTLSALQLFKQAKLDVVILEVGLGGRLDATNIVDSDVAAIT---SIALDHTDWLGYDRESI 187 (437)
T ss_dssp HHHHHHTTCCCCHHHHHHHHHHHHHHHTCCSEEEEECSSSSTTSGGGGSCCSEEEEC---CCCCCBCCCTTCSHHHH
T ss_pred HHHHCCCCCCCCHHHHHHHHHHHHHHHCCCCEEEEECCCHHHHCCCCCCCCCEEEEC---CCCHHHHHHCCCHHHHH
T ss_conf 433204788877478899999999975698589970471344177525654415661---42420676514148999
No 32
>2ph1_A Nucleotide-binding protein; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; 2.70A {Archaeoglobus fulgidus dsm 4304} PDB: 3kb1_A*
Probab=94.30 E-value=0.024 Score=35.81 Aligned_cols=36 Identities=28% Similarity=0.300 Sum_probs=30.1
Q ss_pred EEEECCEEECCCCCCHHHHHHHHHHHHCCCCEEEEEE
Q ss_conf 8998230007888748999999998524731598760
Q gi|254780401|r 46 VICVGGFVMGGTGKTPTALAIAKAVIDKNLKPGFLSR 82 (338)
Q Consensus 46 VI~VGNitvGGtGKTP~v~~l~~~l~~~g~~~~ilsR 82 (338)
+|+|=|- =||+|||-++.-||..|.+.|++|.++=-
T Consensus 20 ~IaV~Sg-KGGvGKTT~a~NLA~aLA~~GkkVllvD~ 55 (262)
T 2ph1_A 20 RIAVMSG-KGGVGKSTVTALLAVHYARQGKKVGILDA 55 (262)
T ss_dssp EEEEECS-SSCTTHHHHHHHHHHHHHHTTCCEEEEEC
T ss_pred EEEEECC-CCCCCHHHHHHHHHHHHHHCCCEEEEECC
T ss_conf 9999759-99887999999999999977992576478
No 33
>2j28_9 Signal recognition particle 54; ribosome, protein/RNA complex; 8.0A {Escherichia coli}
Probab=94.22 E-value=0.01 Score=38.40 Aligned_cols=204 Identities=16% Similarity=0.153 Sum_probs=108.3
Q ss_pred EEEECCEEECCCCCCHHHHHHHHHHHHC-CCCEEEEEE-CCCCCCCCCEEEECCCCCHHHHCCHHH-HHHHC--CCCCC-
Q ss_conf 8998230007888748999999998524-731598760-457877775587145678877042123-32205--76346-
Q gi|254780401|r 46 VICVGGFVMGGTGKTPTALAIAKAVIDK-NLKPGFLSR-GYGRKSRISFRVDLEKHSAYDVGDEPL-LLARR--AVTIV- 119 (338)
Q Consensus 46 VI~VGNitvGGtGKTP~v~~l~~~l~~~-g~~~~ilsR-GYg~~~~~~~~v~~~~~~~~~vGDEp~-lla~~--~pv~V- 119 (338)
+..|| +=|+|||-++.-||.+++.+ |++|++++= -|+ ..| =|-+ .+++. +|++.
T Consensus 102 Im~VG---vnGsGKTTTiaKLA~~~k~k~~kkVllva~DTfR-------------~AA----~eQLk~~a~~~~vpv~~~ 161 (430)
T 2j28_9 102 VLMAG---LQGAGKTTSVGKLGKFLREKHKKKVLVVSADVYR-------------PAA----IKQLETLAEQVGVDFFPS 161 (430)
T ss_dssp EEEEC---SSSSSSTTTHHHHHHHHHTSSSCCCCBCCCCCSS-------------SCS----HHHHHHHHHHTTCCCCCC
T ss_pred EEEEC---CCCCCCCCHHHHHHHHHHHHCCCEEEEEECCCCC-------------CCH----HHHHHHHHHHCCCCCCCC
T ss_conf 99975---6899855429999999999479858999557555-------------158----999999986047774156
Q ss_pred --CCCHHH----HHHHHCCCCCCEEEECCCC-CC-------------CCCCCEEEEEEECCCCCCCCCCCCCCHHHHHCC
Q ss_conf --520122----5664102457479971832-23-------------441230699996184335665537613652100
Q gi|254780401|r 120 --TSDRKI----GVQMLLQEGVDIIIMDDGF-HS-------------ADLQADFSLIVVNSHRGLGNGLVFPAGPLRVPL 179 (338)
Q Consensus 120 --~~~R~~----~~~~~~~~~~diiIlDDGf-Qh-------------~~l~rdl~Ivl~d~~~~~gn~~llPaGpLREp~ 179 (338)
+.|-.. |+..+...++|+||.|-+= .| +.+.+|..++|+|+.-+. .-+--+=-.
T Consensus 162 ~~~~dp~~va~~ai~~ak~~~~DvviiDTAGR~~~d~~lm~El~~i~~~~~p~e~lLV~da~~gq--~~~~qa~~f---- 235 (430)
T 2j28_9 162 DVGQKPVDIVNAALKEAKLKFYDVLLVDTAGRLHVDEAMMDEIKQVHASINPVETLFVVDAMTGQ--DAANTAKAF---- 235 (430)
T ss_dssp SSCCCTTHHHHHHHHHHHHTTCSCEEEEECCCCSSHHHHHHHHHHHHHHHCCSEEEEEEETTTGG--GGHHHHHHH----
T ss_pred CCCCCHHHHHHHHHHHHHHCCCCEEEEECCCCHHHHHHHHHHHHHHHHHCCCCEEEEEEECCCCH--HHHHHHHHH----
T ss_conf 65568789999999999986999899946763021599999999999856985799984255675--679999999----
Q ss_pred HHHHHHHHHHHHCCCCHH-----H--HHHHCCCCHHHHH-HH-HCCCCCCCCCE-EEEEECCCCHHHHHHHHHHHC-CCC
Q ss_conf 255665145442044124-----5--7763135011122-22-01321116863-898741553578999887401-000
Q gi|254780401|r 180 SRQLSYVDAILYVGNKKN-----V--ISSIKNKSVYFAK-LK-PRLTFDLSGKK-VLAFSGIADTEKFFTTVRQLG-ALI 248 (338)
Q Consensus 180 ~~~l~rad~vi~~~~~~~-----~--~~~~~~~~i~~~~-~~-~~~~~~l~~k~-v~afsGIa~P~~F~~~L~~~g-~~i 248 (338)
..++ ..+-+|+|+-+.. . .....+.|+.|.. .+ ......+...+ +-.+-|.||...+.+..++.- .+-
T Consensus 236 ~~~~-~~~gvIlTKlDg~akgG~alsi~~~~~~PI~fig~GE~i~Dle~F~p~~f~~rilgmGDi~~L~e~~~~~~~~~~ 314 (430)
T 2j28_9 236 NEAL-PLTGVVLTKVDGDARGGAALSIRHITGKPIKFLGVGEKTEALEPFHPDRIASRILGMGDVLSLIEDIESKVDRAQ 314 (430)
T ss_dssp HTTC-SSCEEEEECSSSCSCCTHHHHHHHTTTCCBCCCCCSSSTTCCCCCCGGGCCCCCSSCCCCCHHHHHHHHHTTTCC
T ss_pred HHHC-CCCEEEEEECCCCCCCCHHHHHHHHHCCCEEEEECCCCHHHCHHCCHHHHHHHHHCCCCHHHHHHHHHHHHHHHH
T ss_conf 8635-886058850256777307855999979696999648853311121899999998176538999999986423667
Q ss_pred CCC--CCCCCCCCCCHHHHHHHHHHHHHCC
Q ss_conf 012--2143323489899999999756479
Q gi|254780401|r 249 EQC--YSFGDHAHLSDKKIAYLLDQAQQKG 276 (338)
Q Consensus 249 ~~~--~~fpDHh~ys~~dl~~i~~~a~~~~ 276 (338)
... ........|+-.|+..=.+..++.+
T Consensus 315 ~~~~~~k~~~~~~f~l~D~~~q~~~~~kmG 344 (430)
T 2j28_9 315 AEKLASKLKKGDGFDLNDFLEQLRQMKNMG 344 (430)
T ss_dssp CCCSSSSSCCCCCSCSCCCHHHHHCCTTTT
T ss_pred HHHHHHHHHCCCCCCHHHHHHHHHHHHHCC
T ss_conf 789999986069866999999999998227
No 34
>1ihu_A Arsenical pump-driving ATPase; aluminum fluoride, ADP, ARSA ATPase, ATP binding site, hydrolase; HET: ADP; 2.15A {Escherichia coli} SCOP: c.37.1.10 c.37.1.10 PDB: 1f48_A* 1ii0_A* 1ii9_A*
Probab=94.18 E-value=0.029 Score=35.23 Aligned_cols=38 Identities=26% Similarity=0.373 Sum_probs=31.5
Q ss_pred CCEEEECCEEECCCCCCHHHHHHHHHHHHCCCCEEEEEEC
Q ss_conf 9889982300078887489999999985247315987604
Q gi|254780401|r 44 IPVICVGGFVMGGTGKTPTALAIAKAVIDKNLKPGFLSRG 83 (338)
Q Consensus 44 ~pVI~VGNitvGGtGKTP~v~~l~~~l~~~g~~~~ilsRG 83 (338)
..+|-+.. =||+|||-++..||..|.++|+++.+++--
T Consensus 8 ~~~i~~sG--KGGvGKTTvaa~lA~~lA~~G~rVLlvD~D 45 (589)
T 1ihu_A 8 PPYLFFTG--KGGVGKTSISCATAIRLAEQGKRVLLVSTD 45 (589)
T ss_dssp CSEEEEEC--STTSSHHHHHHHHHHHHHHTTCCEEEEECC
T ss_pred CCEEEEEC--CCCHHHHHHHHHHHHHHHHCCCCEEEEECC
T ss_conf 84899989--960079999999999999689989999789
No 35
>3kjh_A CO dehydrogenase/acetyl-COA synthase complex, accessory protein COOC; Zn-bound dimer, nickel binding protein, ATPase; 1.90A {Carboxydothermus hydrogenoformans} PDB: 3kjg_A* 3kje_A 3kji_A*
Probab=94.14 E-value=0.021 Score=36.12 Aligned_cols=36 Identities=28% Similarity=0.308 Sum_probs=30.6
Q ss_pred EEECCEEECCCCCCHHHHHHHHHHHHCCCCEEEEEECC
Q ss_conf 99823000788874899999999852473159876045
Q gi|254780401|r 47 ICVGGFVMGGTGKTPTALAIAKAVIDKNLKPGFLSRGY 84 (338)
Q Consensus 47 I~VGNitvGGtGKTP~v~~l~~~l~~~g~~~~ilsRGY 84 (338)
|.|.+ -||+|||-++.-||..|.++|++|.++.--.
T Consensus 3 Iav~g--KGGvGKTt~a~~lA~~la~~g~~VlliD~D~ 38 (254)
T 3kjh_A 3 LAVAG--KGGVGKTTVAAGLIKIMASDYDKIYAVDGDP 38 (254)
T ss_dssp EEEEC--SSSHHHHHHHHHHHHHHTTTCSCEEEEEECT
T ss_pred EEEEC--CCCCHHHHHHHHHHHHHHHCCCCEEEEECCC
T ss_conf 99989--8822799999999999996899689997899
No 36
>2afh_E Nitrogenase iron protein 1; nitrogen fixation, iron-sulfur, metal-binding, molybdenum, oxidoreductase; HET: HCA CFN CLF PGE PG4 P6G 1PE; 2.10A {Azotobacter vinelandii} SCOP: c.37.1.10 PDB: 1g1m_A 1g5p_A 1m1y_E* 1m34_E* 1n2c_E* 1nip_A* 1fp6_A* 2afi_E* 2afk_E* 2nip_A 1de0_A 1xcp_A* 1xdb_A 1xd8_A 1xd9_A* 1g20_E* 1g21_E* 2c8v_A* 1rw4_A
Probab=94.14 E-value=0.027 Score=35.43 Aligned_cols=28 Identities=25% Similarity=0.363 Sum_probs=26.3
Q ss_pred ECCCCCCHHHHHHHHHHHHCCCCEEEEE
Q ss_conf 0788874899999999852473159876
Q gi|254780401|r 54 MGGTGKTPTALAIAKAVIDKNLKPGFLS 81 (338)
Q Consensus 54 vGGtGKTP~v~~l~~~l~~~g~~~~ils 81 (338)
=||+|||-++.-||..|.++|++|.++=
T Consensus 10 KGGVGKTT~a~nLA~aLA~~G~rVLlID 37 (289)
T 2afh_E 10 KGGIGKSTTTQNLVAALAEMGKKVMIVG 37 (289)
T ss_dssp CTTSSHHHHHHHHHHHHHHTTCCEEEEE
T ss_pred CCCCCHHHHHHHHHHHHHHCCCCEEEEE
T ss_conf 9987599999999999998799889994
No 37
>3la6_A Tyrosine-protein kinase WZC; P-loop protein, nucleotide binding domain, walker A motif, B protein kinase, oligomerization; HET: ADP; 3.20A {Escherichia coli}
Probab=93.83 E-value=0.077 Score=32.19 Aligned_cols=63 Identities=17% Similarity=0.106 Sum_probs=42.2
Q ss_pred HHHHHHHHHHHHHHHHHHC-CCCCCCCCEEEECCEEECCCCCCHHHHHHHHHHHHCCCCEEEEEE
Q ss_conf 9999999999999997404-643388988998230007888748999999998524731598760
Q gi|254780401|r 19 LYPISWIYSFISSKLMKRG-QRLHAPIPVICVGGFVMGGTGKTPTALAIAKAVIDKNLKPGFLSR 82 (338)
Q Consensus 19 L~Pls~iy~~~~~~~~~~~-~~~~~~~pVI~VGNitvGGtGKTP~v~~l~~~l~~~g~~~~ilsR 82 (338)
-.|.|...-.++.++.... .....+..||.|-+ +.||.|||-++..||..|.+.|.+|.+|-=
T Consensus 66 ~~p~~~~~e~~r~lr~~l~~~~~~~~~kvi~VtS-~~~G~GKTtia~nLA~~lA~~G~rVLLID~ 129 (286)
T 3la6_A 66 GNPTDLAIEAIRSLRTSLHFAMMQAQNNVLMMTG-VSPSIGMTFVCANLAAVISQTNKRVLLIDC 129 (286)
T ss_dssp HCTTCHHHHHHHHHHHHHHHHSTTTTCCEEEEEE-SSSSSSHHHHHHHHHHHHHTTTCCEEEEEC
T ss_pred CCCCCHHHHHHHHHHHHHHHHCCCCCCEEEEEEC-CCCCCCHHHHHHHHHHHHHHCCCEEEEEEC
T ss_conf 6999879999999999987741599981899977-999998899999999999977991899836
No 38
>1yks_A Genome polyprotein [contains: flavivirin protease NS3 catalytic subunit]; helicase, flavivirus, DEAD-BOX, ATPase, rtpase, hydrolase; 1.80A {Yellow fever virus} SCOP: c.37.1.14 c.37.1.14 PDB: 1ymf_A*
Probab=93.77 E-value=0.055 Score=33.21 Aligned_cols=54 Identities=11% Similarity=0.159 Sum_probs=34.5
Q ss_pred CCEEEEEE-CCCCHHHHHHHHHHHCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCEEEECH
Q ss_conf 86389874-155357899988740100001221433234898999999997564798799854
Q gi|254780401|r 222 GKKVLAFS-GIADTEKFFTTVRQLGALIEQCYSFGDHAHLSDKKIAYLLDQAQQKGLILVTTA 283 (338)
Q Consensus 222 ~k~v~afs-GIa~P~~F~~~L~~~g~~i~~~~~fpDHh~ys~~dl~~i~~~a~~~~~~iiTTE 283 (338)
+.+++.|| ++..=+.+.+.|++.|+++... |.....++.+++.+ .....||+|.
T Consensus 177 ~gk~LVF~~s~~~~e~la~~L~~~g~~v~~l-----hg~~~~~~~~~~~~---g~~~vvVaTd 231 (440)
T 1yks_A 177 KRPTAWFLPSIRAANVMAASLRKAGKSVVVL-----NRKTFEREYPTIKQ---KKPDFILATD 231 (440)
T ss_dssp CSCEEEECSCHHHHHHHHHHHHHTTCCEEEC-----CSSSCC-----------CCCSEEEESS
T ss_pred CCCEEEEECCHHHHHHHHHHHHHCCCEEEEE-----CCCCHHHHHHHHHC---CCEEEEEECC
T ss_conf 8988999895999999999998589819998-----79974887767553---8832999823
No 39
>3end_A Light-independent protochlorophyllide reductase iron-sulfur ATP-binding protein; BCHL, electron donor, DPOR, Fe protein, nitrogenase; HET: ADP; 1.63A {Rhodobacter sphaeroides 2} PDB: 3fwy_A*
Probab=93.65 E-value=0.059 Score=32.99 Aligned_cols=38 Identities=24% Similarity=0.205 Sum_probs=32.5
Q ss_pred CCCEEEECCEEECCCCCCHHHHHHHHHHHHCCCCEEEEEE
Q ss_conf 8988998230007888748999999998524731598760
Q gi|254780401|r 43 PIPVICVGGFVMGGTGKTPTALAIAKAVIDKNLKPGFLSR 82 (338)
Q Consensus 43 ~~pVI~VGNitvGGtGKTP~v~~l~~~l~~~g~~~~ilsR 82 (338)
+..||.|=+ =||.|||-++.=||-.|.++|++|.+|==
T Consensus 40 ~akiIAVaG--KGGVGKTTtsvNLA~aLA~~GkrVLlID~ 77 (307)
T 3end_A 40 GAKVFAVYG--KGGIGKSTTSSNLSAAFSILGKRVLQIGC 77 (307)
T ss_dssp CCEEEEEEC--STTSSHHHHHHHHHHHHHHTTCCEEEEEE
T ss_pred CCEEEEEEC--CCCCCHHHHHHHHHHHHHHCCCEEEEEEE
T ss_conf 743999989--98757999999999999987994999810
No 40
>2www_A Methylmalonic aciduria type A protein, mitochondrial; transport protein, disease mutation, mitochondrion, nucleotide-binding; HET: GDP 2PE; 2.64A {Homo sapiens}
Probab=93.65 E-value=0.33 Score=27.72 Aligned_cols=139 Identities=14% Similarity=0.156 Sum_probs=79.9
Q ss_pred CCCCCEEEECCEEECCCCCCHHHHHHHHHHHHCCCCEEEEEECCCCCCCCCEEEECCCCCHHHHCCHHHHHHHC-CC---
Q ss_conf 38898899823000788874899999999852473159876045787777558714567887704212332205-76---
Q gi|254780401|r 41 HAPIPVICVGGFVMGGTGKTPTALAIAKAVIDKNLKPGFLSRGYGRKSRISFRVDLEKHSAYDVGDEPLLLARR-AV--- 116 (338)
Q Consensus 41 ~~~~pVI~VGNitvGGtGKTP~v~~l~~~l~~~g~~~~ilsRGYg~~~~~~~~v~~~~~~~~~vGDEp~lla~~-~p--- 116 (338)
.....+|+|.- ..|+|||-++..|++.+.++|++++||.--=-+.. +.-.--||---|.... .|
T Consensus 71 ~~~a~~IGitG--~PGaGKStli~~l~~~~~~~g~~vaVla~Dpss~~----------~gg~llgdriRm~~~~~~~~~~ 138 (349)
T 2www_A 71 KPLAFRVGLSG--PPGAGKSTFIEYFGKMLTERGHKLSVLAVDPSSCT----------SGGSLLGDKTRMTELSRDMNAY 138 (349)
T ss_dssp CCSCEEEEEEC--CTTSSHHHHHHHHHHHHHHTTCCEEEEECCC--------------------------CCSTTCTTEE
T ss_pred CCCEEEEEECC--CCCCCHHHHHHHHHHHHHHCCCEEEEEECCCCCHH----------HHHHHHHCCCCEEECCCCCCCC
T ss_conf 88705886217--99988999999999999847971789957878662----------6888775388469635787631
Q ss_pred ----------CCCCCCHHHHHHHHCCCCCCEEEECCC--CCC---CCCCCEEEEEEECCCCCCCCCCCCCCHHHHHCCHH
Q ss_conf ----------346520122566410245747997183--223---44123069999618433566553761365210025
Q gi|254780401|r 117 ----------TIVTSDRKIGVQMLLQEGVDIIIMDDG--FHS---ADLQADFSLIVVNSHRGLGNGLVFPAGPLRVPLSR 181 (338)
Q Consensus 117 ----------v~V~~~R~~~~~~~~~~~~diiIlDDG--fQh---~~l~rdl~Ivl~d~~~~~gn~~llPaGpLREp~~~ 181 (338)
--++..=..++..+...+.|+|+..-. .|. ...--|+-+++++.. .|--+|+ + ...
T Consensus 139 ir~~~~~~~~gg~~~~~~~~i~llea~G~D~i~iEtvG~gq~e~~~~~~ad~~v~v~~p~----~Gd~~q~----~-k~g 209 (349)
T 2www_A 139 IRPSPTRGTLGGVTRTTNEAILLCEGAGYDIILIETVGVGQSEFAVADMVDMFVLLLPPA----GGDELQG----I-KRG 209 (349)
T ss_dssp EECC---------CTTHHHHHHHHHHTTCSEEEEECCCC--CHHHHHTTCSEEEEEECCC--------------------
T ss_pred CCCCHHHHHHCCHHHHHHHHHHHHHCCCCCEEEEEECCCCCCCCCEECCCCEEEEEECCC----CCCHHHH----H-HCC
T ss_conf 266644442111025479999987406998699985366502543322665466873367----6422545----4-016
Q ss_pred HHHHHHHHHHCCCCHHHHH
Q ss_conf 5665145442044124577
Q gi|254780401|r 182 QLSYVDAILYVGNKKNVIS 200 (338)
Q Consensus 182 ~l~rad~vi~~~~~~~~~~ 200 (338)
-+..||++++||.+.....
T Consensus 210 i~EiADiiVVNKaD~~~~~ 228 (349)
T 2www_A 210 IIEMADLVAVTKSDGDLIV 228 (349)
T ss_dssp -CCSCSEEEECCCSGGGHH
T ss_pred CEECCCEEEEECCCCCCHH
T ss_conf 1022207888156763367
No 41
>1cp2_A CP2, nitrogenase iron protein; oxidoreductase; 1.93A {Clostridium pasteurianum} SCOP: c.37.1.10
Probab=93.49 E-value=0.064 Score=32.74 Aligned_cols=29 Identities=17% Similarity=0.210 Sum_probs=27.0
Q ss_pred ECCCCCCHHHHHHHHHHHHCCCCEEEEEE
Q ss_conf 07888748999999998524731598760
Q gi|254780401|r 54 MGGTGKTPTALAIAKAVIDKNLKPGFLSR 82 (338)
Q Consensus 54 vGGtGKTP~v~~l~~~l~~~g~~~~ilsR 82 (338)
=||+|||-++.-||..|.++|++|.+|==
T Consensus 9 KGGVGKTT~a~nLA~~La~~G~rVLlID~ 37 (269)
T 1cp2_A 9 KGGIGKSTTTQNLTSGLHAMGKTIMVVGC 37 (269)
T ss_dssp CTTSSHHHHHHHHHHHHHTTTCCEEEEEE
T ss_pred CCCCCHHHHHHHHHHHHHHCCCCEEEEEC
T ss_conf 99876999999999999978997899958
No 42
>2i4i_A ATP-dependent RNA helicase DDX3X; DEAD, structural genomics, SGC, structural genomics consortium, hydrolase; HET: AMP; 2.20A {Homo sapiens}
Probab=93.48 E-value=0.097 Score=31.45 Aligned_cols=59 Identities=20% Similarity=0.132 Sum_probs=41.9
Q ss_pred CCCEEEEEE-CCCCHHHHHHHHHHHCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCC-EEEECHH
Q ss_conf 686389874-155357899988740100001221433234898999999997564798-7998546
Q gi|254780401|r 221 SGKKVLAFS-GIADTEKFFTTVRQLGALIEQCYSFGDHAHLSDKKIAYLLDQAQQKGL-ILVTTAK 284 (338)
Q Consensus 221 ~~k~v~afs-GIa~P~~F~~~L~~~g~~i~~~~~fpDHh~ys~~dl~~i~~~a~~~~~-~iiTTEK 284 (338)
.+++.+.|| .+..-+.+.+.|+..|+.+.. =|...+.++-+.+.+....... .+|||.-
T Consensus 275 ~~~~~lvf~~~~~~~~~l~~~L~~~g~~~~~-----~h~~~~~~~R~~~~~~~~~g~~~vLv~Td~ 335 (417)
T 2i4i_A 275 KDSLTLVFVETKKGADSLEDFLYHEGYACTS-----IHGDRSQRDREEALHQFRSGKSPILVATAV 335 (417)
T ss_dssp TTCEEEEECSSHHHHHHHHHHHHHTTCCEEE-----ECTTSCHHHHHHHHHHHHHTSSCEEEECHH
T ss_pred CCCEEEEEECCHHHHHHHHHHHHHCCCEEEE-----EECCCCHHHHHHHHHHHHCCCCEEEEEECC
T ss_conf 5522455404099999999999868985999-----627742888866665422599539994172
No 43
>3k9g_A PF-32 protein; ssgcid, SBRI, decode biostructures, UW, NIH, niaid, borellia burgdorferi, plasmid partition protein, iodide, SAD phasing; 2.25A {Borrelia burgdorferi} PDB: 3k9h_A
Probab=93.43 E-value=0.065 Score=32.70 Aligned_cols=37 Identities=27% Similarity=0.442 Sum_probs=30.9
Q ss_pred CEEEECCEEECCCCCCHHHHHHHHHHHHCCCCEEEEEEC
Q ss_conf 889982300078887489999999985247315987604
Q gi|254780401|r 45 PVICVGGFVMGGTGKTPTALAIAKAVIDKNLKPGFLSRG 83 (338)
Q Consensus 45 pVI~VGNitvGGtGKTP~v~~l~~~l~~~g~~~~ilsRG 83 (338)
.||+|.|- =||+|||-++.-||..|. +|++|.++.=-
T Consensus 28 kvI~v~s~-KGGVGKTT~a~nLA~~la-~g~rVllID~D 64 (267)
T 3k9g_A 28 KIITIASI-KGGVGKSTSAIILATLLS-KNNKVLLIDMD 64 (267)
T ss_dssp EEEEECCS-SSSSCHHHHHHHHHHHHT-TTSCEEEEEEC
T ss_pred EEEEEECC-CCCCHHHHHHHHHHHHHH-CCCCEEEEECC
T ss_conf 79999899-997589999999999998-79988999689
No 44
>1nij_A Hypothetical protein YJIA; structural genomics, P-loop protein, GTP binding, structure 2 function project, S2F, unknown function; 2.00A {Escherichia coli} SCOP: c.37.1.10 d.237.1.1
Probab=93.41 E-value=0.056 Score=33.16 Aligned_cols=137 Identities=20% Similarity=0.241 Sum_probs=73.6
Q ss_pred CCCEEEECCEEECCCCCCHHHHHHHHHHHHCCCCEEEEEECCCCCCCCCEEEECCCCCHHHHCCHHHHHHHCCCCCCCCC
Q ss_conf 89889982300078887489999999985247315987604578777755871456788770421233220576346520
Q gi|254780401|r 43 PIPVICVGGFVMGGTGKTPTALAIAKAVIDKNLKPGFLSRGYGRKSRISFRVDLEKHSAYDVGDEPLLLARRAVTIVTSD 122 (338)
Q Consensus 43 ~~pVI~VGNitvGGtGKTP~v~~l~~~l~~~g~~~~ilsRGYg~~~~~~~~v~~~~~~~~~vGDEp~lla~~~pv~V~~~ 122 (338)
++||..|+-.- |+|||-+.-.|.+. ..|.+++||--=+|.- -+|..- -.+.|++-..|..-|--+..++
T Consensus 3 ~ipv~iitGFL--GaGKTTll~~ll~~--~~~~~~avivNefG~~-----~iD~~l--l~~~~~~v~eL~~GCiCC~~~~ 71 (318)
T 1nij_A 3 PIAVTLLTGFL--GAGKTTLLRHILNE--QHGYKIAVIENEFGEV-----SVDDQL--IGDRATQIKTLTNGCICCSRSN 71 (318)
T ss_dssp CEEEEEEEESS--SSSCHHHHHHHHHS--CCCCCEEEECSSCCSC-----CEEEEE--ECTTSCEEEEETTSCEEECTTS
T ss_pred CCCEEEEEECC--CCCHHHHHHHHHHC--CCCCCEEEEECCCCCC-----CCCHHH--HHCCCCCEEEECCCCEEECCCH
T ss_conf 53689998488--89999999999837--7899789997788763-----000999--8377961898528840303424
Q ss_pred H-HHHHHHHC------CCCCCEEEEC----------------CCCCCCCCCCEEEEEEECCCCCCCCCCCCCCHHHHHCC
Q ss_conf 1-22566410------2457479971----------------83223441230699996184335665537613652100
Q gi|254780401|r 123 R-KIGVQMLL------QEGVDIIIMD----------------DGFHSADLQADFSLIVVNSHRGLGNGLVFPAGPLRVPL 179 (338)
Q Consensus 123 R-~~~~~~~~------~~~~diiIlD----------------DGfQh~~l~rdl~Ivl~d~~~~~gn~~llPaGpLREp~ 179 (338)
- ..+...+. ...+|.||.. |...-..+.-+--+.++|+.+.. ..+...++ .
T Consensus 72 dl~~~l~~ll~~~~~~~~~~d~ivIEtSGla~P~~i~~~l~~~~~~~~~~~l~~vvtvvDa~~~~---~~~~~~~~---~ 145 (318)
T 1nij_A 72 ELEDALLDLLDNLDKGNIQFDRLVIECTGMADPGPIIQTFFSHEVLCQRYLLDGVIALVDAVHAD---EQMNQFTI---A 145 (318)
T ss_dssp CHHHHHHHHHHHHHHTSCCCSEEEEEEETTCCHHHHHHHHHHSHHHHHHEEEEEEEEEEETTTHH---HHHHHCHH---H
T ss_pred HHHHHHHHHHHHHHCCCCCCCEEEEECCCCCCHHHHHHHHHHHHHHCCEEEECCCCCHHHHHHHH---HHHHHHHH---H
T ss_conf 58999999999874056776469996478778799999987655314548866622210555456---65432233---5
Q ss_pred HHHHHHHHHHHHCCCCH
Q ss_conf 25566514544204412
Q gi|254780401|r 180 SRQLSYVDAILYVGNKK 196 (338)
Q Consensus 180 ~~~l~rad~vi~~~~~~ 196 (338)
.+.+..||.|+++|.+.
T Consensus 146 ~~Qi~~Ad~IvlnK~Dl 162 (318)
T 1nij_A 146 QSQVGYADRILLTKTDV 162 (318)
T ss_dssp HHHHHTCSEEEEECTTT
T ss_pred HHHHHHCCCHHCCHHHC
T ss_conf 67887367321442210
No 45
>3io3_A DEHA2D07832P; chaperone, membrane traffic, ATPase; HET: ADP; 1.80A {Debaryomyces hansenii}
Probab=93.26 E-value=0.05 Score=33.53 Aligned_cols=37 Identities=32% Similarity=0.358 Sum_probs=28.9
Q ss_pred CEEEECCEEECCCCCCHHHHHHHHH--HHHCCCCEEEEEEC
Q ss_conf 8899823000788874899999999--85247315987604
Q gi|254780401|r 45 PVICVGGFVMGGTGKTPTALAIAKA--VIDKNLKPGFLSRG 83 (338)
Q Consensus 45 pVI~VGNitvGGtGKTP~v~~l~~~--l~~~g~~~~ilsRG 83 (338)
-+|.|. -=||+|||-++..||.. +.++|++|.+++=-
T Consensus 19 r~i~~s--GKGGvGKTT~a~~lA~~lalA~~G~rVLlvD~D 57 (348)
T 3io3_A 19 KWIFVG--GKGGVGKTTTSSSVAVQLALAQPNEQFLLISTD 57 (348)
T ss_dssp SEEEEE--CSTTSSHHHHHHHHHHHHHHHCTTSCEEEEECC
T ss_pred EEEEEE--CCCCCHHHHHHHHHHHHHHHHHCCCEEEEEECC
T ss_conf 599996--898572999999999999999589919999489
No 46
>1wcv_1 SOJ, segregation protein; ATPase, bacterial, chromosome segregation; 1.6A {Thermus thermophilus} PDB: 2bej_A* 2bek_A*
Probab=92.97 E-value=0.032 Score=34.86 Aligned_cols=37 Identities=24% Similarity=0.332 Sum_probs=31.4
Q ss_pred CCEEEECCEEECCCCCCHHHHHHHHHHHHCCCCEEEEE
Q ss_conf 98899823000788874899999999852473159876
Q gi|254780401|r 44 IPVICVGGFVMGGTGKTPTALAIAKAVIDKNLKPGFLS 81 (338)
Q Consensus 44 ~pVI~VGNitvGGtGKTP~v~~l~~~l~~~g~~~~ils 81 (338)
..+|+|-|. =||+|||-++.-||-.|.++|++|++|-
T Consensus 6 ~k~I~v~s~-KGGvGKTTia~nlA~~La~~g~~VllID 42 (257)
T 1wcv_1 6 VRRIALANQ-KGGVGKTTTAINLAAYLARLGKRVLLVD 42 (257)
T ss_dssp CCEEEECCS-SCCHHHHHHHHHHHHHHHHTTCCEEEEE
T ss_pred CEEEEEECC-CCCCHHHHHHHHHHHHHHHCCCCEEEEE
T ss_conf 769999869-9987699999999999997799889996
No 47
>2woj_A ATPase GET3; tail-anchored, membrane protein, targeting factor, endoplasmic reticulum, TRC40, ATP-binding, golgi apparatus; HET: ADP; 1.99A {Saccharomyces cerevisiae} PDB: 3h84_A 3idq_A 3a36_A 3a37_A*
Probab=92.93 E-value=0.059 Score=32.98 Aligned_cols=38 Identities=34% Similarity=0.421 Sum_probs=29.3
Q ss_pred CCEEEECCEEECCCCCCHHHHHHHHHHH--HCCCCEEEEEEC
Q ss_conf 9889982300078887489999999985--247315987604
Q gi|254780401|r 44 IPVICVGGFVMGGTGKTPTALAIAKAVI--DKNLKPGFLSRG 83 (338)
Q Consensus 44 ~pVI~VGNitvGGtGKTP~v~~l~~~l~--~~g~~~~ilsRG 83 (338)
..+|-|.. =||+|||-++..||-.|. ++|++|.+++=-
T Consensus 18 ~r~i~~sG--KGGVGKTT~a~~lA~~LA~~~~G~rVLlvD~D 57 (354)
T 2woj_A 18 HKWIFVGG--KGGVGKTTSSCSIAIQMALSQPNKQFLLISTD 57 (354)
T ss_dssp CCEEEEEE--STTSSHHHHHHHHHHHHHHHCTTSCEEEEECC
T ss_pred CEEEEEEC--CCCCCHHHHHHHHHHHHHHHCCCCEEEEEECC
T ss_conf 37999979--99880999999999999986589959999799
No 48
>3igf_A ALL4481 protein; two-domained protein consisting of the N-terminal alpha-beta fold and the C-terminal all beta domain., structural genomics, PSI-2; 2.00A {Nostoc SP}
Probab=92.87 E-value=0.028 Score=35.27 Aligned_cols=28 Identities=21% Similarity=0.243 Sum_probs=27.1
Q ss_pred ECCCCCCHHHHHHHHHHHHCCCCEEEEE
Q ss_conf 0788874899999999852473159876
Q gi|254780401|r 54 MGGTGKTPTALAIAKAVIDKNLKPGFLS 81 (338)
Q Consensus 54 vGGtGKTP~v~~l~~~l~~~g~~~~ils 81 (338)
-||+|||-++..+|..+.++|+++.++|
T Consensus 10 KGGVGKTT~aa~lA~~lA~~G~rvLlvs 37 (374)
T 3igf_A 10 KSGVARTKIAIAAAKLLASQGKRVLLAG 37 (374)
T ss_dssp SBHHHHHHHHHHHHHHHHHTTCCEEEEE
T ss_pred CCCCHHHHHHHHHHHHHHHCCCCEEEEE
T ss_conf 9877299999999999997899689996
No 49
>2eyq_A TRCF, transcription-repair coupling factor; MFD, SF2 ATPase, hydrolase; HET: EPE; 3.20A {Escherichia coli} SCOP: b.34.18.1 c.37.1.19 c.37.1.19 c.37.1.19 c.37.1.19 d.315.1.1
Probab=92.84 E-value=0.57 Score=25.99 Aligned_cols=212 Identities=14% Similarity=0.171 Sum_probs=96.0
Q ss_pred EEEECCEEECCCCCCHHHHHHHHHHHHCCCCEEEEEECCCCCCCCCEEEECCCCCHHHHCCHHHHHHHCCCCC---CC--
Q ss_conf 8998230007888748999999998524731598760457877775587145678877042123322057634---65--
Q gi|254780401|r 46 VICVGGFVMGGTGKTPTALAIAKAVIDKNLKPGFLSRGYGRKSRISFRVDLEKHSAYDVGDEPLLLARRAVTI---VT-- 120 (338)
Q Consensus 46 VI~VGNitvGGtGKTP~v~~l~~~l~~~g~~~~ilsRGYg~~~~~~~~v~~~~~~~~~vGDEp~lla~~~pv~---V~-- 120 (338)
.+..|- =|+|||=+.+..+-.-...|.+++|++ |..+ -+.+.=.+-.-.....|+- +.
T Consensus 627 ~L~~g~---tGsGKT~v~~~a~~~a~~~g~qv~il~---------PT~~-----La~Q~~~~~~~~~~~~~~~v~~l~~~ 689 (1151)
T 2eyq_A 627 RLVCGD---VGFGKTEVAMRAAFLAVDNHKQVAVLV---------PTTL-----LAQQHYDNFRDRFANWPVRIEMISRF 689 (1151)
T ss_dssp EEEECC---CCTTTHHHHHHHHHHHHTTTCEEEEEC---------SSHH-----HHHHHHHHHHHHSTTTTCCEEEESTT
T ss_pred HEEECC---CCCCHHHHHHHHHHHHHHCCCEEEEEE---------CCHH-----HHHHHHHHHHHHHHCCCCEEEEEECC
T ss_conf 643407---898669999999999863586489994---------8499-----99999999999751159789985177
Q ss_pred ---CCHHHHHHHHCCCCCCEEEECCCC-CCCCCCCEEEEEEECCCCCCCCCCCCCCHHHHHCCHHHHHHHHHHHHCCCCH
Q ss_conf ---201225664102457479971832-2344123069999618433566553761365210025566514544204412
Q gi|254780401|r 121 ---SDRKIGVQMLLQEGVDIIIMDDGF-HSADLQADFSLIVVNSHRGLGNGLVFPAGPLRVPLSRQLSYVDAILYVGNKK 196 (338)
Q Consensus 121 ---~~R~~~~~~~~~~~~diiIlDDGf-Qh~~l~rdl~Ivl~d~~~~~gn~~llPaGpLREp~~~~l~rad~vi~~~~~~ 196 (338)
+.+.+....+..-.+|++|---++ +..--.+++.++++|-.+.||... ||-+.......+.+..+..+.
T Consensus 690 ~~~~e~~~~l~~~~~G~i~iiigT~~~l~~~~~f~~Lgl~iiDE~h~f~~~~-------~~~~k~~~~~~~~l~~sATp~ 762 (1151)
T 2eyq_A 690 RSAKEQTQILAEVAEGKIDILIGTHKLLQSDVKFKDLGLLIVDEEHRFGVRH-------KERIKAMRANVDILTLTATPI 762 (1151)
T ss_dssp SCHHHHHHHHHHHHTTCCSEEEECTHHHHSCCCCSSEEEEEEESGGGSCHHH-------HHHHHHHHTTSEEEEEESSCC
T ss_pred CCHHHHHHHHHHHCCCCCCEEECCHHHCCCCCCCCCCCEEEECHHHHHHHHH-------HHHHHHHCCCCCEEEECCCCC
T ss_conf 6288999999874389834474258880276021556734624255521989-------999985078975885105687
Q ss_pred -HHHHH-HC---------CCCHHH-------HHH-----HHCCCCC-CCC-CEEEEEECCCCHHHHHHHHHHHCCCCCCC
Q ss_conf -45776-31---------350111-------222-----2013211-168-63898741553578999887401000012
Q gi|254780401|r 197 -NVISS-IK---------NKSVYF-------AKL-----KPRLTFD-LSG-KKVLAFSGIADTEKFFTTVRQLGALIEQC 251 (338)
Q Consensus 197 -~~~~~-~~---------~~~i~~-------~~~-----~~~~~~~-l~~-k~v~afsGIa~P~~F~~~L~~~g~~i~~~ 251 (338)
..... .. ..|... ... ....... .++ +.+..+.-+.+-+.-...+.++-.+.
T Consensus 763 prtl~~~~~g~~d~s~~~~~p~~~~~~~t~~~~~~~~~~~~~i~~el~r~~q~~~~~~~~~~~~~~~~~~~~~~~~~--- 839 (1151)
T 2eyq_A 763 PRTLNMAMSGMRDLSIIATPPARRLAVKTFVREYDSMVVREAILREILRGGQVYYLYNDVENIQKAAERLAELVPEA--- 839 (1151)
T ss_dssp CHHHHHHHTTTSEEEECCCCCCBCBCEEEEEEECCHHHHHHHHHHHHTTTCEEEEECCCSSCHHHHHHHHHHHCTTS---
T ss_pred HHHHHHHHHHHHHHHHHCCCCCCCCCCEEEEECCHHHHHHHHHHHHHHCCCCEEEEECCCCCHHHHHHHHHHHCCCC---
T ss_conf 78999998511132001258877767479961411577999999999818976899536665689999999768876---
Q ss_pred CCCCCCCCCCHHHHHHHHHHHHHCCC-EEEECHH
Q ss_conf 21433234898999999997564798-7998546
Q gi|254780401|r 252 YSFGDHAHLSDKKIAYLLDQAQQKGL-ILVTTAK 284 (338)
Q Consensus 252 ~~fpDHh~ys~~dl~~i~~~a~~~~~-~iiTTEK 284 (338)
..-.=|-.-++++.+++.....+... .+|+|.=
T Consensus 840 ~v~~~Hg~m~~~~r~~~~~~F~~g~~~iLVaT~i 873 (1151)
T 2eyq_A 840 RIAIGHGQMRERELERVMNDFHHQRFNVLVCTTI 873 (1151)
T ss_dssp CEEECCSSCCHHHHHHHHHHHHTTSCCEEEESST
T ss_pred EEEEEECCCCHHHHHHHHHHHHCCCCEEEEECHH
T ss_conf 5888605578999999999997488509996403
No 50
>3e1s_A Exodeoxyribonuclease V, subunit RECD; alpha and beta protein, ATP-binding, nucleotide-binding, hydrolase; 2.20A {Deinococcus radiodurans} PDB: 3gp8_A 3gpl_A*
Probab=92.80 E-value=0.55 Score=26.10 Aligned_cols=27 Identities=33% Similarity=0.432 Sum_probs=24.6
Q ss_pred CCCCCCHHHHHHHHHHHHCCCCEEEEE
Q ss_conf 788874899999999852473159876
Q gi|254780401|r 55 GGTGKTPTALAIAKAVIDKNLKPGFLS 81 (338)
Q Consensus 55 GGtGKTP~v~~l~~~l~~~g~~~~ils 81 (338)
+|||||-++..+++.++..|.++.++.
T Consensus 213 aGTGKTt~l~~i~~~~~~~~~~v~~~A 239 (574)
T 3e1s_A 213 PGTGKSTTTKAVADLAESLGLEVGLCA 239 (574)
T ss_dssp TTSCHHHHHHHHHHHHHHTTCCEEEEE
T ss_pred CCCHHHHHHHHHHHHHHHCCCEEEEEC
T ss_conf 860099999999999986798499878
No 51
>3cio_A ETK, tyrosine-protein kinase ETK; WZC, escherichia coli tyrosine kinase domain, signaling protein, transferase, inner membrane, membrane; 2.50A {Escherichia coli}
Probab=92.54 E-value=0.16 Score=29.93 Aligned_cols=40 Identities=18% Similarity=0.286 Sum_probs=33.2
Q ss_pred CCCCCEEEECCEEECCCCCCHHHHHHHHHHHHCCCCEEEEE
Q ss_conf 38898899823000788874899999999852473159876
Q gi|254780401|r 41 HAPIPVICVGGFVMGGTGKTPTALAIAKAVIDKNLKPGFLS 81 (338)
Q Consensus 41 ~~~~pVI~VGNitvGGtGKTP~v~~l~~~l~~~g~~~~ils 81 (338)
..+..||.|-+ +.||.|||-++..||..|.+.|++|.+|-
T Consensus 101 ~~~~kvI~VtS-~~~G~GKTtva~nLA~~lA~~GkrVLLID 140 (299)
T 3cio_A 101 ETENNILMITG-ATPDSGKTFVSSTLAAVIAQSDQKVLFID 140 (299)
T ss_dssp SCSCCEEEEEE-SSSSSCHHHHHHHHHHHHHHTTCCEEEEE
T ss_pred CCCCEEEEEEC-CCCCCCHHHHHHHHHHHHHHCCCCEEEEE
T ss_conf 99985999977-99999889999999999997799689991
No 52
>2v6i_A RNA helicase; membrane, hydrolase, transmembrane, RNA replication, viral replication, nucleotide-binding; 2.10A {Kokobera virus} PDB: 2v6j_A
Probab=92.44 E-value=0.15 Score=30.02 Aligned_cols=54 Identities=13% Similarity=0.089 Sum_probs=34.9
Q ss_pred CCEEEEEE-CCCCHHHHHHHHHHHCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCEEEECH
Q ss_conf 86389874-155357899988740100001221433234898999999997564798799854
Q gi|254780401|r 222 GKKVLAFS-GIADTEKFFTTVRQLGALIEQCYSFGDHAHLSDKKIAYLLDQAQQKGLILVTTA 283 (338)
Q Consensus 222 ~k~v~afs-GIa~P~~F~~~L~~~g~~i~~~~~fpDHh~ys~~dl~~i~~~a~~~~~~iiTTE 283 (338)
+.+++.|| ++..=+.+.+.|++.|+++.. =|..-.+++..++.+ .....||+|-
T Consensus 171 ~g~iLVFv~s~~~~~~la~~L~~~g~~v~~-----lhg~~~~~~~~~~~~---~~~~ilVaT~ 225 (431)
T 2v6i_A 171 DGRTVWFVHSIKQGAEIGTCLQKAGKKVLY-----LNRKTFESEYPKCKS---EKWDFVITTD 225 (431)
T ss_dssp SSCEEEECSSHHHHHHHHHHHHHTTCCEEE-----ESTTTHHHHTTHHHH---SCCSEEEECG
T ss_pred CCCEEEEECCHHHHHHHHHHHHHCCCEEEE-----ECCCCCHHHHHHHHC---CCCEEEEECC
T ss_conf 898799979899999999999868990999-----679999999998767---9976999787
No 53
>2pbr_A DTMP kinase, thymidylate kinase; transferase, nucleotide biosynthesis, TMP-binding, ATP-binding, structural genomics, NPPSFA; 1.96A {Aquifex aeolicus VF5}
Probab=92.02 E-value=0.14 Score=30.33 Aligned_cols=33 Identities=24% Similarity=0.257 Sum_probs=27.1
Q ss_pred EEEE-CCEEECCCCCCHHHHHHHHHHHHCCCCEEEEE
Q ss_conf 8998-23000788874899999999852473159876
Q gi|254780401|r 46 VICV-GGFVMGGTGKTPTALAIAKAVIDKNLKPGFLS 81 (338)
Q Consensus 46 VI~V-GNitvGGtGKTP~v~~l~~~l~~~g~~~~ils 81 (338)
.|+| |+. |+|||-.+..|++.|.++|+.+.+..
T Consensus 2 ~I~ieG~~---GsGKsT~~~~L~~~L~~~g~~v~~~~ 35 (195)
T 2pbr_A 2 LIAFEGID---GSGKTTQAKKLYEYLKQKGYFVSLYR 35 (195)
T ss_dssp EEEEECST---TSCHHHHHHHHHHHHHHTTCCEEEEE
T ss_pred EEEEECCC---CCCHHHHHHHHHHHHHHCCCCEEEEE
T ss_conf 89998899---89899999999999987799489986
No 54
>1ihu_A Arsenical pump-driving ATPase; aluminum fluoride, ADP, ARSA ATPase, ATP binding site, hydrolase; HET: ADP; 2.15A {Escherichia coli} SCOP: c.37.1.10 c.37.1.10 PDB: 1f48_A* 1ii0_A* 1ii9_A*
Probab=91.93 E-value=0.099 Score=31.39 Aligned_cols=32 Identities=31% Similarity=0.364 Sum_probs=28.6
Q ss_pred ECCCCCCHHHHHHHHHHHHCCCCEEEEEECCC
Q ss_conf 07888748999999998524731598760457
Q gi|254780401|r 54 MGGTGKTPTALAIAKAVIDKNLKPGFLSRGYG 85 (338)
Q Consensus 54 vGGtGKTP~v~~l~~~l~~~g~~~~ilsRGYg 85 (338)
-||.|||-++..||-.+.++|+++.+++=-=+
T Consensus 335 KGGVGKTtva~~lA~~la~~G~rvLlvd~Dp~ 366 (589)
T 1ihu_A 335 KGGVGKTTMAAAIAVRLADMGFDVHLTTSDPA 366 (589)
T ss_dssp STTSSHHHHHHHHHHHHHHTTCCEEEEESCCC
T ss_pred CCCCCHHHHHHHHHHHHHHCCCEEEEECCCCC
T ss_conf 99932899999999999867996999637988
No 55
>2p67_A LAO/AO transport system kinase; ARGK, structural genomics, PSI-2, protein structure initiative; 1.80A {Escherichia coli K12} SCOP: c.37.1.10
Probab=91.83 E-value=0.21 Score=29.06 Aligned_cols=133 Identities=14% Similarity=0.163 Sum_probs=73.4
Q ss_pred EEECCEEECCCCCCHHHHHHHHHHHHCCCCEEEEEECCCCCCCCCEEEECCCCCHHHHCCHHHHHH--HCCCCC------
Q ss_conf 998230007888748999999998524731598760457877775587145678877042123322--057634------
Q gi|254780401|r 47 ICVGGFVMGGTGKTPTALAIAKAVIDKNLKPGFLSRGYGRKSRISFRVDLEKHSAYDVGDEPLLLA--RRAVTI------ 118 (338)
Q Consensus 47 I~VGNitvGGtGKTP~v~~l~~~l~~~g~~~~ilsRGYg~~~~~~~~v~~~~~~~~~vGDEp~lla--~~~pv~------ 118 (338)
+.||=.=..|+|||-++..|++.+.+.|.+++++...=-+...+. .-.||.--|-. ....++
T Consensus 57 ~~IgItG~PGaGKSTLi~~L~~~~~~~~~~vavlavDpss~~sgg----------ailgDr~Rm~~l~~~~~~~ir~~~s 126 (341)
T 2p67_A 57 LRLGVTGTPGAGKSTFLEAFGMLLIREGLKVAVIAVDPSSPVTGG----------SILGDKTRMNDLARAEAAFIRPVPS 126 (341)
T ss_dssp EEEEEEECTTSCHHHHHHHHHHHHHHTTCCEEEEEECCC-------------------------CTTTTCTTEEEEEECC
T ss_pred EEEEEECCCCCCHHHHHHHHHHHHHHCCCCEEEECCCCCCCCCCC----------CCCHHHHHHHHHCCCCCEEEECCCC
T ss_conf 289732899998999999999998616886014416886640244----------3621267898751577535413666
Q ss_pred ------CCCCHHHHHHHHCCCCCCEEEECC---CCCCCC--CCCEEEEEEECCCCCCCCCCCCCCHHHHHCCHHHHHHHH
Q ss_conf ------652012256641024574799718---322344--123069999618433566553761365210025566514
Q gi|254780401|r 119 ------VTSDRKIGVQMLLQEGVDIIIMDD---GFHSAD--LQADFSLIVVNSHRGLGNGLVFPAGPLRVPLSRQLSYVD 187 (338)
Q Consensus 119 ------V~~~R~~~~~~~~~~~~diiIlDD---GfQh~~--l~rdl~Ivl~d~~~~~gn~~llPaGpLREp~~~~l~rad 187 (338)
++..=.+++..+...+.|+|+..- |-.-.. ..-|+-+++.+.. .|.-+|+ +. ...+..+|
T Consensus 127 ~~~lgg~~~~~~~~v~~l~~~g~D~iliETVG~gq~e~~v~~~aD~~l~vl~p~----~GD~iq~----~k-~gi~EiaD 197 (341)
T 2p67_A 127 SGHLGGASQRARELMLLCEAAGYDVVIVETVGVGQSETEVARMVDCFISLQIAG----GGDDLQG----IK-KGLMEVAD 197 (341)
T ss_dssp -----CHHHHHHHHHHHHHHTTCSEEEEEEECCTTHHHHHHTTCSEEEEEECC----------CC----CC-HHHHHHCS
T ss_pred CCCCCCHHHHHHHHHHHHHHCCCCCEEEEECCCCCCCHHHHHCCCEEEEEECCC----CCCHHHH----CC-CCHHEECC
T ss_conf 544432036568899998755997312210267765212442055035640567----6423321----25-23111055
Q ss_pred HHHHCCCCHHH
Q ss_conf 54420441245
Q gi|254780401|r 188 AILYVGNKKNV 198 (338)
Q Consensus 188 ~vi~~~~~~~~ 198 (338)
++++||.+...
T Consensus 198 ivVVNK~D~~~ 208 (341)
T 2p67_A 198 LIVINKDDGDN 208 (341)
T ss_dssp EEEECCCCTTC
T ss_pred EEEEECCCCCC
T ss_conf 79997523543
No 56
>3eiq_A Eukaryotic initiation factor 4A-I; PDCD4, anti-oncogene, apoptosis, cell cycle, cytoplasm, nucleus, phosphoprotein, RNA-binding, ATP-binding; 3.50A {Homo sapiens}
Probab=91.74 E-value=0.5 Score=26.41 Aligned_cols=58 Identities=10% Similarity=0.157 Sum_probs=40.7
Q ss_pred CCCEEEEEE-CCCCHHHHHHHHHHHCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCC-EEEECH
Q ss_conf 686389874-155357899988740100001221433234898999999997564798-799854
Q gi|254780401|r 221 SGKKVLAFS-GIADTEKFFTTVRQLGALIEQCYSFGDHAHLSDKKIAYLLDQAQQKGL-ILVTTA 283 (338)
Q Consensus 221 ~~k~v~afs-GIa~P~~F~~~L~~~g~~i~~~~~fpDHh~ys~~dl~~i~~~a~~~~~-~iiTTE 283 (338)
.++++++|| .+..-+.+.+.|++.|+.+.. =|...+..+-..+.+..++... .+|+|.
T Consensus 279 ~~~k~lVF~~s~~~~~~l~~~L~~~~~~~~~-----~h~~~~~~~r~~~~~~f~~g~~~iLv~T~ 338 (414)
T 3eiq_A 279 TITQAVIFINTRRKVDWLTEKMHARDFTVSA-----MHGDMDQKERDVIMREFRSGSSRVLITTD 338 (414)
T ss_dssp CCSSCEEECSCHHHHHHHHHHHHTTTCCCEE-----C---CHHHHHHHHHHHHSCC---CEEECS
T ss_pred CCCCEEEEECCHHHHHHHHHHHHHCCCCEEE-----EECCCCHHHHHHHHHHHHCCCCEEEEECC
T ss_conf 8996899955499999999999867998799-----81899677799999998748976999868
No 57
>2wv9_A Flavivirin protease NS2B regulatory subunit, flavivirin protease NS3 catalytic subunit...; nucleotide-binding, capsid protein; 2.75A {Murray valley encephalitis virus}
Probab=91.70 E-value=0.22 Score=29.00 Aligned_cols=53 Identities=13% Similarity=0.192 Sum_probs=31.9
Q ss_pred CCEEEEEE-CCCCHHHHHHHHHHHCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCC-CEEEECH
Q ss_conf 86389874-15535789998874010000122143323489899999999756479-8799854
Q gi|254780401|r 222 GKKVLAFS-GIADTEKFFTTVRQLGALIEQCYSFGDHAHLSDKKIAYLLDQAQQKG-LILVTTA 283 (338)
Q Consensus 222 ~k~v~afs-GIa~P~~F~~~L~~~g~~i~~~~~fpDHh~ys~~dl~~i~~~a~~~~-~~iiTTE 283 (338)
+.++++|| ++..=+...+.|++.|+++... |..-.+++ .+++++.. ..||+|-
T Consensus 410 ~G~iLVFv~s~~eie~la~~L~~~g~~v~~L-----hs~l~~~~----~~k~~~G~~kVVVATn 464 (673)
T 2wv9_A 410 AGKTVWFVASVKMSNEIAQCLQRAGKRVIQL-----NRKSYDTE----YPKCKNGDWDFVITTD 464 (673)
T ss_dssp CSCEEEECSSHHHHHHHHHHHHTTTCCEEEE-----CSSSHHHH----GGGGGTCCCSEEEECG
T ss_pred CCCEEEEECCHHHHHHHHHHHHHCCCEEEEE-----CCCCCHHH----HHHCCCCCEEEEEECC
T ss_conf 9999999399899999999998789849990-----68897776----7346699846999725
No 58
>2qm8_A GTPase/ATPase; G protein, G3E, metallochaperone; HET: MSE; 1.70A {Methylobacterium extorquens AM1} SCOP: c.37.1.10 PDB: 2qm7_A*
Probab=90.98 E-value=0.23 Score=28.84 Aligned_cols=131 Identities=20% Similarity=0.222 Sum_probs=72.3
Q ss_pred EEEECCEEECCCCCCHHHHHHHHHHHHCCCCEEEEEECCCCCCCCCEEEECCCCCHHHHCCHHHHHH--HCCCCC-----
Q ss_conf 8998230007888748999999998524731598760457877775587145678877042123322--057634-----
Q gi|254780401|r 46 VICVGGFVMGGTGKTPTALAIAKAVIDKNLKPGFLSRGYGRKSRISFRVDLEKHSAYDVGDEPLLLA--RRAVTI----- 118 (338)
Q Consensus 46 VI~VGNitvGGtGKTP~v~~l~~~l~~~g~~~~ilsRGYg~~~~~~~~v~~~~~~~~~vGDEp~lla--~~~pv~----- 118 (338)
.+.||=.=.-|+|||-++..|++.+...|.+++|++..=-+... ...-.||--.|-. ....++
T Consensus 55 ~~~IgItG~PGaGKSTLi~~L~~~~~~~g~kvavlavDpss~~t----------ggallgD~~Rm~~~~~~~~~~ir~~~ 124 (337)
T 2qm8_A 55 AIRVGITGVPGVGKSTTIDALGSLLTAAGHKVAVLAVDPSSTRT----------GGSILGDKTRMARLAIDRNAFIRPSP 124 (337)
T ss_dssp SEEEEEECCTTSCHHHHHHHHHHHHHHTTCCEEEEEECGGGGSS----------CCCSSCCGGGSTTGGGCTTEEEECCC
T ss_pred CEEEECCCCCCCCHHHHHHHHHHHHHCCCCCEEEEECCCCCCCC----------HHCCCCHHHHHHHHCCCCCEEECCCC
T ss_conf 25995238999889999999999974389831123148762112----------20044126889985246622542530
Q ss_pred -------CCCCHHHHHHHHCCCCCCEEEECCC--CCCC---CCCCEEEEEEECCCCCCCCCC-CCCCHHHHHCCHHHHHH
Q ss_conf -------6520122566410245747997183--2234---412306999961843356655-37613652100255665
Q gi|254780401|r 119 -------VTSDRKIGVQMLLQEGVDIIIMDDG--FHSA---DLQADFSLIVVNSHRGLGNGL-VFPAGPLRVPLSRQLSY 185 (338)
Q Consensus 119 -------V~~~R~~~~~~~~~~~~diiIlDDG--fQh~---~l~rdl~Ivl~d~~~~~gn~~-llPaGpLREp~~~~l~r 185 (338)
++..-..++..+...+.|+|+.+-. -|.. .---|+.+++.+. +.|... ..=+| -+..
T Consensus 125 ~~g~~~g~~~~~~~~i~~~~~~g~d~ilvEtVG~gq~e~~v~~~ad~~v~v~~p--~~Gd~~q~~k~g--------ilE~ 194 (337)
T 2qm8_A 125 SSGTLGGVAAKTRETMLLCEAAGFDVILVETVGVGQSETAVADLTDFFLVLMLP--GAGDELQGIKKG--------IFEL 194 (337)
T ss_dssp CCSSHHHHHHHHHHHHHHHHHTTCCEEEEEECSSSSCHHHHHTTSSEEEEEECS--CC------CCTT--------HHHH
T ss_pred CCCCCCCHHHHHHHHHHHHHHCCCCEEEEEECCCCCCHHHHHCCCCEEEEECCC--CCCHHHHHHCCC--------HHEE
T ss_conf 136531046778999999874498759997135554223441244323322056--752046563415--------2102
Q ss_pred HHHHHHCCCCH
Q ss_conf 14544204412
Q gi|254780401|r 186 VDAILYVGNKK 196 (338)
Q Consensus 186 ad~vi~~~~~~ 196 (338)
+|++++||.+.
T Consensus 195 aDiiVVNK~Dl 205 (337)
T 2qm8_A 195 ADMIAVNKADD 205 (337)
T ss_dssp CSEEEEECCST
T ss_pred CCEEEEECCCC
T ss_conf 12799964127
No 59
>3bfv_A CAPA1, CAPB2, membrane protein CAPA1, protein tyrosine kinase; chimerical protein, P-loop protein, capsule biogenesis/degradation; HET: ADP; 1.80A {Staphylococcus aureus} PDB: 2ved_A*
Probab=90.88 E-value=0.39 Score=27.19 Aligned_cols=39 Identities=21% Similarity=0.254 Sum_probs=32.1
Q ss_pred CCCCEEEECCEEECCCCCCHHHHHHHHHHHHCCCCEEEEE
Q ss_conf 8898899823000788874899999999852473159876
Q gi|254780401|r 42 APIPVICVGGFVMGGTGKTPTALAIAKAVIDKNLKPGFLS 81 (338)
Q Consensus 42 ~~~pVI~VGNitvGGtGKTP~v~~l~~~l~~~g~~~~ils 81 (338)
-+..||.|-.. .||.|||-++..||..|.+.|++|.+|-
T Consensus 80 ~~~kvI~vtS~-~~g~GKTtia~nLA~~lA~~G~rVLlID 118 (271)
T 3bfv_A 80 SAVQSIVITSE-APGAGKSTIAANLAVAYAQAGYKTLIVD 118 (271)
T ss_dssp CCCCEEEEECS-STTSSHHHHHHHHHHHHHHTTCCEEEEE
T ss_pred CCCEEEEEECC-CCCCCHHHHHHHHHHHHHHCCCEEEEEE
T ss_conf 99859999748-9989889999999999997699499993
No 60
>3ea0_A ATPase, para family; alpha-beta-alpha sandwich, structural genomics, PSI-2, protein structure initiative; HET: ATP; 2.20A {Chlorobium tepidum tls}
Probab=90.79 E-value=0.19 Score=29.40 Aligned_cols=38 Identities=18% Similarity=0.091 Sum_probs=30.1
Q ss_pred CCEEEECCEEECCCCCCHHHHHHHHHHHH-CCCCEEEEEE
Q ss_conf 98899823000788874899999999852-4731598760
Q gi|254780401|r 44 IPVICVGGFVMGGTGKTPTALAIAKAVID-KNLKPGFLSR 82 (338)
Q Consensus 44 ~pVI~VGNitvGGtGKTP~v~~l~~~l~~-~g~~~~ilsR 82 (338)
..||.|-|- -||+|||-++.-||..|.+ .|++|.++-=
T Consensus 4 ~riI~v~s~-kGGvGkTt~a~nlA~~La~~~~~~vlliD~ 42 (245)
T 3ea0_A 4 KRVFGFVSA-KGGDGGSCIAANFAFALSQEPDIHVLAVDI 42 (245)
T ss_dssp CEEEEEEES-STTSSHHHHHHHHHHHHTTSTTCCEEEEEC
T ss_pred CEEEEEECC-CCCCHHHHHHHHHHHHHHHHCCCCEEEEEC
T ss_conf 879999899-997659999999999999868998999979
No 61
>3p32_A Probable GTPase RV1496/MT1543; structural genomics, seattle structural genomics center for infectious disease, ssgcid, MEAB, MMAA; HET: GDP PGE; 1.90A {Mycobacterium tuberculosis} PDB: 3md0_A* 3nxs_A*
Probab=90.71 E-value=0.39 Score=27.14 Aligned_cols=133 Identities=18% Similarity=0.225 Sum_probs=74.4
Q ss_pred EEECCEEECCCCCCHHHHHHHHHHHHCCCCEEEEEECCCCCCCCCEEEECCCCCHHHHCCHHHHHHH--CCCCC------
Q ss_conf 9982300078887489999999985247315987604578777755871456788770421233220--57634------
Q gi|254780401|r 47 ICVGGFVMGGTGKTPTALAIAKAVIDKNLKPGFLSRGYGRKSRISFRVDLEKHSAYDVGDEPLLLAR--RAVTI------ 118 (338)
Q Consensus 47 I~VGNitvGGtGKTP~v~~l~~~l~~~g~~~~ilsRGYg~~~~~~~~v~~~~~~~~~vGDEp~lla~--~~pv~------ 118 (338)
+.||=.=..|+|||-++..|++.+.+.|.+++|+...=.+..++ ..-.||--.|-.. ...++
T Consensus 80 ~rIgItG~PGaGKSTLi~~L~~~~~~~g~~VavlavDPss~~sg----------gailgDr~Rm~~~~~~~~~~ir~~~t 149 (355)
T 3p32_A 80 HRVGITGVPGVGKSTAIEALGMHLIERGHRVAVLAVDPSSTRTG----------GSILGDKTRMARLAVHPNAYIRPSPT 149 (355)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHHHHTTTCCEEEEEEC--------------------------CHHHHTCTTEEEECCC-
T ss_pred EEEEEECCCCCCHHHHHHHHHHHHHHCCCCEEEEECCCCCCCCH----------HHCCCCHHHHHHHCCCCCEEEEECCC
T ss_conf 59974289999899999999999986488656884688874212----------01210012477750588635761587
Q ss_pred ------CCCCHHHHHHHHCCCCCCEEEECC---CCCCCCC--CCEEEEEEECCCCCCCCCC-CCCCHHHHHCCHHHHHHH
Q ss_conf ------652012256641024574799718---3223441--2306999961843356655-376136521002556651
Q gi|254780401|r 119 ------VTSDRKIGVQMLLQEGVDIIIMDD---GFHSADL--QADFSLIVVNSHRGLGNGL-VFPAGPLRVPLSRQLSYV 186 (338)
Q Consensus 119 ------V~~~R~~~~~~~~~~~~diiIlDD---GfQh~~l--~rdl~Ivl~d~~~~~gn~~-llPaGpLREp~~~~l~ra 186 (338)
+++.-..+...+...+.|+|+.+- |-....+ .-|.-+++++... |... ..-+| -+..+
T Consensus 150 rg~~gg~~~~~~~~~~ll~~~G~d~iiiETVGvgqse~~v~~~aD~~vlV~~P~~--GDeiQ~~k~g--------ilEia 219 (355)
T 3p32_A 150 SGTLGGVTRATRETVVLLEAAGFDVILIETVGVGQSEVAVANMVDTFVLLTLART--GDQLQGIKKG--------VLELA 219 (355)
T ss_dssp -CCHHHHHHHHHHHHHHHHHTTCCEEEEEECSCSSHHHHHHTTCSEEEEEEESST--TCTTTTCCTT--------SGGGC
T ss_pred CCCCHHHHHHHHHHHHHHHHCCCCEEEEEECCCCCCCCEEEECCCCEEEECCCCC--CHHHHHCCCC--------HHHCC
T ss_conf 6632024442144677787539980234303554444301002331012305664--1467650713--------33116
Q ss_pred HHHHHCCCCHHHH
Q ss_conf 4544204412457
Q gi|254780401|r 187 DAILYVGNKKNVI 199 (338)
Q Consensus 187 d~vi~~~~~~~~~ 199 (338)
|++++||.+....
T Consensus 220 DiiVVNK~D~~~a 232 (355)
T 3p32_A 220 DIVVVNKADGEHH 232 (355)
T ss_dssp SEEEEECCCGGGH
T ss_pred CEEEEECCCCCCH
T ss_conf 5789963136774
No 62
>1a7j_A Phosphoribulokinase; transferase, calvin cycle; 2.50A {Rhodobacter sphaeroides} SCOP: c.37.1.6
Probab=89.96 E-value=0.3 Score=27.98 Aligned_cols=38 Identities=18% Similarity=0.299 Sum_probs=31.1
Q ss_pred CCCEEEECCEEECCCCCCHHHHHHHHHHHHCCCCEEEEEE
Q ss_conf 8988998230007888748999999998524731598760
Q gi|254780401|r 43 PIPVICVGGFVMGGTGKTPTALAIAKAVIDKNLKPGFLSR 82 (338)
Q Consensus 43 ~~pVI~VGNitvGGtGKTP~v~~l~~~l~~~g~~~~ilsR 82 (338)
+-|||.|.-- .|+|||-++..|.+.|...|.++++||=
T Consensus 4 k~pIIgItG~--SGSGKTTva~~L~~il~~~~v~~~vI~~ 41 (290)
T 1a7j_A 4 KHPIISVTGS--SGAGTSTVKHTFDQIFRREGVKAVSIEG 41 (290)
T ss_dssp TSCEEEEESC--C---CCTHHHHHHHHHHHHTCCEEEEEG
T ss_pred CCCEEEEECC--CCCCHHHHHHHHHHHHHHCCCCEEEEEC
T ss_conf 9978999899--9780999999999985346997699948
No 63
>1yrb_A ATP(GTP)binding protein; GTPase, P-loop, rossman fold, GDP, hydrolase; HET: GDP; 1.75A {Pyrococcus abyssi} SCOP: c.37.1.10 PDB: 1yr6_A* 1yr8_A* 1yr9_A* 1yra_A* 1yr7_A* 2oxr_A*
Probab=89.45 E-value=0.44 Score=26.80 Aligned_cols=35 Identities=23% Similarity=0.376 Sum_probs=26.1
Q ss_pred CCCEEE-ECCEEECCCCCCHHHHHHHHHHHHCCCCEEEEE
Q ss_conf 898899-823000788874899999999852473159876
Q gi|254780401|r 43 PIPVIC-VGGFVMGGTGKTPTALAIAKAVIDKNLKPGFLS 81 (338)
Q Consensus 43 ~~pVI~-VGNitvGGtGKTP~v~~l~~~l~~~g~~~~ils 81 (338)
..|||. +|-. |+|||-++..|.+++. .+.+++++.
T Consensus 13 ~~~vi~v~G~~---GaGKTTLl~~Ll~~~~-~~~~~~iVn 48 (262)
T 1yrb_A 13 ASMIVVFVGTA---GSGKTTLTGEFGRYLE-DNYKVAYVN 48 (262)
T ss_dssp CCEEEEEECST---TSSHHHHHHHHHHHHT-TTSCEEEEE
T ss_pred CCCEEEEEECC---CCCHHHHHHHHHHHHH-HCCEEEEEE
T ss_conf 78889999189---9809999999999873-087489996
No 64
>1byi_A Dethiobiotin synthase; biotin synthesis, cyclo-ligase, ligase; 0.97A {Escherichia coli} SCOP: c.37.1.10 PDB: 1bs1_A* 1a82_A 1dad_A* 1dae_A* 1daf_A* 1dag_A* 1dah_A* 1dai_A* 1dak_A* 1dam_A* 1dbs_A 1dts_A
Probab=89.25 E-value=0.22 Score=29.00 Aligned_cols=26 Identities=19% Similarity=0.162 Sum_probs=24.6
Q ss_pred CCCCCCHHHHHHHHHHHHCCCCEEEE
Q ss_conf 78887489999999985247315987
Q gi|254780401|r 55 GGTGKTPTALAIAKAVIDKNLKPGFL 80 (338)
Q Consensus 55 GGtGKTP~v~~l~~~l~~~g~~~~il 80 (338)
.|.|||-++.-|+..|.++|++|+++
T Consensus 11 ~GVGKTtvs~~La~~La~~G~rV~~~ 36 (224)
T 1byi_A 11 TEVGKTVASCALLQAAKAAGYRTAGY 36 (224)
T ss_dssp TTSCHHHHHHHHHHHHHHTTCCEEEE
T ss_pred CCCCHHHHHHHHHHHHHHCCCCEEEE
T ss_conf 99759999999999999779949998
No 65
>2jlq_A Serine protease subunit NS3; ribonucleoprotein, nucleotide-binding, viral nucleoprotein, endoplasmic reticulum, helicase, hydrolase, transferase; 1.67A {Dengue virus 4} PDB: 2jly_A* 2jls_A* 2jlu_A 2jlv_A* 2jlw_A 2jlx_A* 2jlz_A* 2jlr_A* 2bmf_A 2bhr_A
Probab=88.98 E-value=0.21 Score=29.11 Aligned_cols=53 Identities=19% Similarity=0.184 Sum_probs=33.3
Q ss_pred CCEEEEEE-CCCCHHHHHHHHHHHCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCC-CEEEECH
Q ss_conf 86389874-15535789998874010000122143323489899999999756479-8799854
Q gi|254780401|r 222 GKKVLAFS-GIADTEKFFTTVRQLGALIEQCYSFGDHAHLSDKKIAYLLDQAQQKG-LILVTTA 283 (338)
Q Consensus 222 ~k~v~afs-GIa~P~~F~~~L~~~g~~i~~~~~fpDHh~ys~~dl~~i~~~a~~~~-~~iiTTE 283 (338)
++++++|| .+..-+...+.|++.|+++... |....+++. +++++.. ..||||.
T Consensus 188 ~gk~LVFv~S~~~ae~la~~L~~~g~~v~~L-----h~~l~~~~~----~~~~~~~~~ilVaTd 242 (451)
T 2jlq_A 188 QGKTVWFVPSIKAGNDIANCLRKSGKRVIQL-----SRKTFDTEY----PKTKLTDWDFVVTTD 242 (451)
T ss_dssp CSCEEEECSSHHHHHHHHHHHHTTTCCEEEE-----CTTTHHHHG----GGGGSSCCSEEEECG
T ss_pred CCCEEEEECCHHHHHHHHHHHHHCCCEEEEC-----CCCCCHHHH----HHCCCCCCEEEEECH
T ss_conf 9999999599899999999997589839990-----899979998----643489942999912
No 66
>1nn5_A Similar to deoxythymidylate kinase (thymidylate kinase); P-loop, D4TMP, transferase; HET: 2DT ANP; 1.50A {Homo sapiens} SCOP: c.37.1.1 PDB: 1e2e_A* 1e2d_A* 1e2g_A* 1e2q_A* 1e99_A* 1e9a_A* 1e9b_A* 1nmx_A* 1nmz_A* 1nn0_A* 1nn1_A* 1e2f_A* 1nn3_A* 1e9c_A* 1e9d_A* 1e9e_A* 1e98_A* 1nmy_A* 1e9f_A*
Probab=87.86 E-value=0.54 Score=26.18 Aligned_cols=35 Identities=17% Similarity=0.275 Sum_probs=28.8
Q ss_pred EEEE-CCEEECCCCCCHHHHHHHHHHHHCCCCEEEEEEC
Q ss_conf 8998-2300078887489999999985247315987604
Q gi|254780401|r 46 VICV-GGFVMGGTGKTPTALAIAKAVIDKNLKPGFLSRG 83 (338)
Q Consensus 46 VI~V-GNitvGGtGKTP~v~~l~~~l~~~g~~~~ilsRG 83 (338)
+|+| |+ -|+|||-.+..|++.|..+|+++.+++..
T Consensus 11 ~I~ieG~---dGsGKST~~~~L~~~L~~~g~~~~~~~~~ 46 (215)
T 1nn5_A 11 LIVLEGV---DRAGKSTQSRKLVEALCAAGHRAELLRFP 46 (215)
T ss_dssp EEEEEES---TTSSHHHHHHHHHHHHHHTTCCEEEEESS
T ss_pred EEEEECC---CCCCHHHHHHHHHHHHHHCCCCEEEEECC
T ss_conf 9999899---88889999999999998679966998649
No 67
>2qgz_A Helicase loader, putative primosome component; structural genomics, PSI-2, protein structure initiative; 2.40A {Streptococcus pyogenes serotype M3}
Probab=87.74 E-value=0.49 Score=26.46 Aligned_cols=25 Identities=28% Similarity=0.422 Sum_probs=11.2
Q ss_pred CCCCCHHHHHHHHHHHH-CCCCEEEE
Q ss_conf 88874899999999852-47315987
Q gi|254780401|r 56 GTGKTPTALAIAKAVID-KNLKPGFL 80 (338)
Q Consensus 56 GtGKTP~v~~l~~~l~~-~g~~~~il 80 (338)
|||||=++.++++.+.. .|+.+..+
T Consensus 162 G~GKT~L~~ai~~~l~~~~~~~v~~~ 187 (308)
T 2qgz_A 162 GIGKSYLLAAMAHELSEKKGVSTTLL 187 (308)
T ss_dssp TSSHHHHHHHHHHHHHHHSCCCEEEE
T ss_pred CCCHHHHHHHHHHHHHHCCCCEEEEE
T ss_conf 98589999999999987579718998
No 68
>1gtv_A TMK, thymidylate kinase; transferase, transferase (ATP:TMP phosphotransferase); HET: TYD TMP; 1.55A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1g3u_A* 1gsi_A* 1mrn_A* 1mrs_A* 1n5i_A* 1n5j_A* 1n5k_A* 1n5l_A* 1w2g_A* 1w2h_A*
Probab=87.39 E-value=0.25 Score=28.57 Aligned_cols=34 Identities=18% Similarity=0.095 Sum_probs=28.1
Q ss_pred EEEECCEEECCCCCCHHHHHHHHHHHHCCCCEEEEEE
Q ss_conf 8998230007888748999999998524731598760
Q gi|254780401|r 46 VICVGGFVMGGTGKTPTALAIAKAVIDKNLKPGFLSR 82 (338)
Q Consensus 46 VI~VGNitvGGtGKTP~v~~l~~~l~~~g~~~~ilsR 82 (338)
|+.-||+ |+|||-++..|++.|..+|+++.+++-
T Consensus 3 I~ieG~d---GsGKST~~~~L~e~l~~~g~~v~~~~e 36 (214)
T 1gtv_A 3 IAIEGVD---GAGKRTLVEKLSGAFRAAGRSVATLAF 36 (214)
T ss_dssp EEEEEEE---EEEHHHHHHHHHHHHHEEEEEEEEEES
T ss_pred EEEECCC---CCCHHHHHHHHHHHHHHCCCCEEEEEC
T ss_conf 9998998---789999999999999877997899856
No 69
>1gm5_A RECG; helicase, replication restart; HET: DNA ADP; 3.24A {Thermotoga maritima} SCOP: a.24.21.1 b.40.4.9 c.37.1.19 c.37.1.19
Probab=87.24 E-value=0.85 Score=24.75 Aligned_cols=100 Identities=14% Similarity=0.178 Sum_probs=54.2
Q ss_pred CCCCCCHHHHHHHHHHHHCCCCEEEEEECCCCCCCCCEEEECCCCCHHHHCCHHHHHHHCCC----CCC----CCCHHHH
Q ss_conf 78887489999999985247315987604578777755871456788770421233220576----346----5201225
Q gi|254780401|r 55 GGTGKTPTALAIAKAVIDKNLKPGFLSRGYGRKSRISFRVDLEKHSAYDVGDEPLLLARRAV----TIV----TSDRKIG 126 (338)
Q Consensus 55 GGtGKTP~v~~l~~~l~~~g~~~~ilsRGYg~~~~~~~~v~~~~~~~~~vGDEp~lla~~~p----v~V----~~~R~~~ 126 (338)
=|||||=+...-+-.....|.++++++ +...-+.+.-++..-+....+ +++ ++.|.+.
T Consensus 398 TGSGKTlv~llpil~~i~~g~q~lila--------------PTreLA~Q~~~~~k~l~~~~~i~v~ll~g~~~~~~~~~~ 463 (780)
T 1gm5_A 398 VGSGKTVVAQLAILDNYEAGFQTAFMV--------------PTSILAIQHYRRTVESFSKFNIHVALLIGATTPSEKEKI 463 (780)
T ss_dssp SSSSHHHHHHHHHHHHHHHTSCEEEEC--------------SCHHHHHHHHHHHHHHHTCSSCCEEECCSSSCHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHHCCCCEEEEE--------------CCHHHHHHHHHHHHHHHCCCCCEEEEEEECCCCHHHHHH
T ss_conf 897460999999999986389559992--------------528999999999987611578328887612550039999
Q ss_pred HHHHCCCCCCEEEECCCCCCCCC-CCEEEEEEECCCCCCCCCC
Q ss_conf 66410245747997183223441-2306999961843356655
Q gi|254780401|r 127 VQMLLQEGVDIIIMDDGFHSADL-QADFSLIVVNSHRGLGNGL 168 (338)
Q Consensus 127 ~~~~~~~~~diiIlDDGfQh~~l-~rdl~Ivl~d~~~~~gn~~ 168 (338)
...+.+..++++|-=-|..+..+ .+++.++++|-.+.||...
T Consensus 464 ~~~l~~G~i~IvIgTp~ll~~~v~f~~L~lvVIDE~hrf~v~q 506 (780)
T 1gm5_A 464 KSGLRNGQIDVVIGTHALIQEDVHFKNLGLVIIDEQHRFGVKQ 506 (780)
T ss_dssp HHHHHSSCCCEEEECTTHHHHCCCCSCCCEEEEESCCCC----
T ss_pred HHHHHCCCCCCEECHHHHHHHCCCCCCCCCEEEEEEEEECHHH
T ss_conf 9999759977411448886524320457841320032300557
No 70
>4tmk_A Protein (thymidylate kinase); ATP:DTMP phosphotransferase; HET: T5A; 1.98A {Escherichia coli} SCOP: c.37.1.1 PDB: 5tmp_A*
Probab=86.66 E-value=0.5 Score=26.38 Aligned_cols=34 Identities=21% Similarity=0.292 Sum_probs=29.4
Q ss_pred CCEEECCCCCCHHHHHHHHHHHHCCCCEEEEEECCCC
Q ss_conf 2300078887489999999985247315987604578
Q gi|254780401|r 50 GGFVMGGTGKTPTALAIAKAVIDKNLKPGFLSRGYGR 86 (338)
Q Consensus 50 GNitvGGtGKTP~v~~l~~~l~~~g~~~~ilsRGYg~ 86 (338)
|+. |+|||-.+..|++.|.+.|++..+.+|.-++
T Consensus 10 G~d---GsGKsT~~~~L~~~L~~~g~~~~~~~~~p~~ 43 (213)
T 4tmk_A 10 GLE---GAGKTTARNVVVETLEQLGIRDMVFTREPGG 43 (213)
T ss_dssp ECT---TSCHHHHHHHHHHHHHHTTCCCEEEEESSCS
T ss_pred CCC---CCCHHHHHHHHHHHHHHCCCCEEEEEECCCC
T ss_conf 999---9889999999999999779975998419699
No 71
>1kht_A Adenylate kinase; phosphotransferase, signaling protein, transferase; HET: AMP; 2.50A {Methanococcus voltae} SCOP: c.37.1.1 PDB: 3h86_B* 1ki9_A
Probab=86.61 E-value=0.31 Score=27.91 Aligned_cols=29 Identities=17% Similarity=0.251 Sum_probs=26.0
Q ss_pred CCCCCCHHHHHHHHHHHHCCCCEEEEEEC
Q ss_conf 78887489999999985247315987604
Q gi|254780401|r 55 GGTGKTPTALAIAKAVIDKNLKPGFLSRG 83 (338)
Q Consensus 55 GGtGKTP~v~~l~~~l~~~g~~~~ilsRG 83 (338)
-|+|||.++..|++.|..+++.+..++.|
T Consensus 12 ~GsGKTT~~~~L~~~l~~~~~~~~~~~~~ 40 (192)
T 1kht_A 12 PGVGSTTSSQLAMDNLRKEGVNYKMVSFG 40 (192)
T ss_dssp TTSCHHHHHHHHHHHHHTTTCCCEEEEHH
T ss_pred CCCCHHHHHHHHHHHHHHCCCCEEEEECC
T ss_conf 99598999999999987659976998688
No 72
>3lv8_A DTMP kinase, thymidylate kinase; structural genomics, infectious diseases, center for structural genomics of infectious diseases; HET: ADP TMP TYD; 1.80A {Vibrio cholerae o1 biovar eltor} PDB: 3n2i_A*
Probab=86.34 E-value=0.63 Score=25.71 Aligned_cols=35 Identities=14% Similarity=0.231 Sum_probs=29.6
Q ss_pred EEEECCEEECCCCCCHHHHHHHHHHHHCCCCEEEEEEC
Q ss_conf 89982300078887489999999985247315987604
Q gi|254780401|r 46 VICVGGFVMGGTGKTPTALAIAKAVIDKNLKPGFLSRG 83 (338)
Q Consensus 46 VI~VGNitvGGtGKTP~v~~l~~~l~~~g~~~~ilsRG 83 (338)
|+.-|+. |+|||-.+..|++.|.++|+.+.+..|-
T Consensus 30 IvieG~d---GsGKSTq~~~L~~~L~~~g~~~~~~~~e 64 (236)
T 3lv8_A 30 IVIEGLE---GAGKSTAIQVVVETLQQNGIDHITRTRE 64 (236)
T ss_dssp EEEEEST---TSCHHHHHHHHHHHHHHTTCCCEEEEES
T ss_pred EEEECCC---CCCHHHHHHHHHHHHHHCCCCEEEEECC
T ss_conf 9998999---8849999999999999669985998249
No 73
>2vos_A Folylpolyglutamate synthase protein FOLC; ligase, conformational change, peptidoglycan synthesis, cell division, cobalt binding; HET: ADP; 2.0A {Mycobacterium tuberculosis} PDB: 2vor_A*
Probab=85.86 E-value=1.7 Score=22.68 Aligned_cols=58 Identities=17% Similarity=0.153 Sum_probs=38.4
Q ss_pred HHHHHCCCCCCCCCEEEECCEEECCCCCCHHHHHHHHHHHHCCCCEEEEEECCCCCCCCCEEE
Q ss_conf 997404643388988998230007888748999999998524731598760457877775587
Q gi|254780401|r 32 KLMKRGQRLHAPIPVICVGGFVMGGTGKTPTALAIAKAVIDKNLKPGFLSRGYGRKSRISFRV 94 (338)
Q Consensus 32 ~~~~~~~~~~~~~pVI~VGNitvGGtGKTP~v~~l~~~l~~~g~~~~ilsRGYg~~~~~~~~v 94 (338)
++..++.+. -..|||- ++|=.|||-++.+|...|+..|++++.-+--|=-+...-+++
T Consensus 53 ~l~~lg~P~-~~~~vI~----VtGTNGKtSt~~~l~~iL~~~G~~vG~~tSPhl~~~~Eri~i 110 (487)
T 2vos_A 53 LMDLLGSPQ-RSYPSIH----IAGTNGKTSVARMVDALVTALHRRTGRTTSPHLQSPVERISI 110 (487)
T ss_dssp HHHHTTCGG-GSSCEEE----EECSSSHHHHHHHHHHHHHHTTCCEEEECSSCSSCGGGGEEE
T ss_pred HHHHCCCHH-HCCCEEE----EECCCHHHHHHHHHHHHHHHCCCCEEEECCCCCCCEEEEEEE
T ss_conf 999749927-6199799----988801899999999999977998689678773842459999
No 74
>2w58_A DNAI, primosome component (helicase loader); ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.50A {Geobacillus kaustophilus HTA426}
Probab=85.00 E-value=0.56 Score=26.02 Aligned_cols=35 Identities=26% Similarity=0.232 Sum_probs=29.1
Q ss_pred CCEEEECCEEECCCCCCHHHHHHHHHHHHCCCCEEEEE
Q ss_conf 98899823000788874899999999852473159876
Q gi|254780401|r 44 IPVICVGGFVMGGTGKTPTALAIAKAVIDKNLKPGFLS 81 (338)
Q Consensus 44 ~pVI~VGNitvGGtGKTP~v~~l~~~l~~~g~~~~ils 81 (338)
-+++-.|+ -|||||=+..++++.+.++|+++..++
T Consensus 55 ~gl~l~G~---~GtGKT~La~ai~~~l~~~~~~~~~~~ 89 (202)
T 2w58_A 55 KGLYLHGS---FGVGKTYLLAAIANELAKRNVSSLIVY 89 (202)
T ss_dssp CEEEEECS---TTSSHHHHHHHHHHHHHTTTCCEEEEE
T ss_pred CEEEEECC---CCCCHHHHHHHHHHHHHHCCCEEEEEE
T ss_conf 74899899---989789999999999753488289974
No 75
>1e8c_A UDP-N-acetylmuramoylalanyl-D-glutamate--2,6- diaminopimelate ligase; peptidoglycan biosynthesis; HET: KCX UAG API; 2.00A {Escherichia coli} SCOP: c.98.1.1 c.59.1.1 c.72.2.1
Probab=83.80 E-value=2.3 Score=21.63 Aligned_cols=41 Identities=17% Similarity=0.116 Sum_probs=32.5
Q ss_pred CCCCCCCCCEEEECCEEECCCCCCHHHHHHHHHHHHCCCCEEEEE
Q ss_conf 464338898899823000788874899999999852473159876
Q gi|254780401|r 37 GQRLHAPIPVICVGGFVMGGTGKTPTALAIAKAVIDKNLKPGFLS 81 (338)
Q Consensus 37 ~~~~~~~~pVI~VGNitvGGtGKTP~v~~l~~~l~~~g~~~~ils 81 (338)
+.+...+.|||.| +|-.|||-++.+|+..|+..+++++..+
T Consensus 101 ~~~~~~~~~vIgI----TGSnGKTTT~~~l~~iL~~~~~~~~~~g 141 (498)
T 1e8c_A 101 YHEPSDNLRLVGV----TGTNGKTTTTQLLAQWSQLLGEISAVMG 141 (498)
T ss_dssp TTCGGGSSEEEEE----ESSSCHHHHHHHHHHHHHHTTCCEEEEE
T ss_pred HCCCCCCCCEEEE----ECCCCCCCEEECCHHHHHHCCCCCEECC
T ss_conf 5573336718999----7899980006460004554375300025
No 76
>2db3_A ATP-dependent RNA helicase VASA; DEAD-BOX, protein-RNA complex, ATPase, riken structural genomics/proteomics initiative, RSGI; HET: ANP; 2.20A {Drosophila melanogaster}
Probab=83.71 E-value=2.4 Score=21.60 Aligned_cols=58 Identities=9% Similarity=0.088 Sum_probs=40.5
Q ss_pred CCEEEEEE-CCCCHHHHHHHHHHHCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCC-EEEECHH
Q ss_conf 86389874-155357899988740100001221433234898999999997564798-7998546
Q gi|254780401|r 222 GKKVLAFS-GIADTEKFFTTVRQLGALIEQCYSFGDHAHLSDKKIAYLLDQAQQKGL-ILVTTAK 284 (338)
Q Consensus 222 ~k~v~afs-GIa~P~~F~~~L~~~g~~i~~~~~fpDHh~ys~~dl~~i~~~a~~~~~-~iiTTEK 284 (338)
..+.+.|| .+..-+.+.+.|+..|+... .=|...+..+-+++++..++... .+|+|.=
T Consensus 300 ~~~~iIF~~t~~~a~~l~~~L~~~~~~~~-----~~h~~~~~~~R~~~l~~F~~g~~~ILvaTd~ 359 (434)
T 2db3_A 300 ADGTIVFVETKRGADFLASFLSEKEFPTT-----SIHGDRLQSQREQALRDFKNGSMKVLIATSV 359 (434)
T ss_dssp CTTEEEECSSHHHHHHHHHHHHHTTCCEE-----EESTTSCHHHHHHHHHHHHTSSCSEEEECGG
T ss_pred CCEEEEEECCHHHHHHHHHHHHHHCCCCC-----CCCCCCCHHHHHHHHHHHHCCCCCEEEECCC
T ss_conf 73499994341879999999874124533-----2245678999999999987599879997785
No 77
>2z0h_A DTMP kinase, thymidylate kinase; ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics, NPPSFA; HET: ADP TYD; 2.10A {Thermotoga maritima} PDB: 3hjn_A*
Probab=83.57 E-value=0.7 Score=25.35 Aligned_cols=28 Identities=18% Similarity=0.217 Sum_probs=24.6
Q ss_pred CCCCCCHHHHHHHHHHHHCCCCEEEEEE
Q ss_conf 7888748999999998524731598760
Q gi|254780401|r 55 GGTGKTPTALAIAKAVIDKNLKPGFLSR 82 (338)
Q Consensus 55 GGtGKTP~v~~l~~~l~~~g~~~~ilsR 82 (338)
-|+|||-.+..|++.|.++|+++...+-
T Consensus 9 dGsGKsT~~~~L~~~L~~~g~~v~~~~~ 36 (197)
T 2z0h_A 9 DGSGKSTQIQLLAQYLEKRGKKVILKRE 36 (197)
T ss_dssp TTSSHHHHHHHHHHHHHHCCC-EEEEES
T ss_pred CCCCHHHHHHHHHHHHHHCCCCEEEEEC
T ss_conf 8888999999999999977998899769
No 78
>3fgn_A Dethiobiotin synthetase; biotin biosynthesis, BIOD, ATP- binding, ligase, magnesium, nucleotide-binding; 1.85A {Mycobacterium tuberculosis} PDB: 3fmf_A* 3fmi_A* 3fpa_A*
Probab=83.29 E-value=0.67 Score=25.51 Aligned_cols=27 Identities=26% Similarity=0.307 Sum_probs=24.7
Q ss_pred CCCCCCHHHHHHHHHHHHCCCCEEEEE
Q ss_conf 788874899999999852473159876
Q gi|254780401|r 55 GGTGKTPTALAIAKAVIDKNLKPGFLS 81 (338)
Q Consensus 55 GGtGKTP~v~~l~~~l~~~g~~~~ils 81 (338)
-|.|||=++..|++.|+++|++|+..-
T Consensus 36 TgVGKT~Vs~~L~~aL~~~G~~V~~~K 62 (251)
T 3fgn_A 36 TGVGKTVVCAALASAARQAGIDVAVCK 62 (251)
T ss_dssp TTSCHHHHHHHHHHHHHHTTCCEEEEE
T ss_pred CCCHHHHHHHHHHHHHHHCCCEEEEEC
T ss_conf 996199999999999996899499977
No 79
>2ccj_A DTMP kinase, thymidylate kinase; transferase, nucleotide biosynthesis, TMP-binding, ATP-binding; HET: TMP; 1.7A {Staphylococcus aureus} PDB: 2cck_A 2ccg_A*
Probab=83.15 E-value=0.99 Score=24.29 Aligned_cols=31 Identities=23% Similarity=0.291 Sum_probs=23.9
Q ss_pred EEE-CCEEECCCCCCHHHHHHHHHHHHCCCCEEEEE
Q ss_conf 998-23000788874899999999852473159876
Q gi|254780401|r 47 ICV-GGFVMGGTGKTPTALAIAKAVIDKNLKPGFLS 81 (338)
Q Consensus 47 I~V-GNitvGGtGKTP~v~~l~~~l~~~g~~~~ils 81 (338)
|+| |+. |+|||-.+..|++.|. +|+++..+.
T Consensus 5 I~ieG~d---GsGKsT~~~~L~~~L~-~~~~v~~~~ 36 (205)
T 2ccj_A 5 ITFEGPE---GSGKTTVINEVYHRLV-KDYDVIMTR 36 (205)
T ss_dssp EEEECCT---TSCHHHHHHHHHHHHT-TTSCEEEEE
T ss_pred EEEECCC---CCHHHHHHHHHHHHHH-CCCCEEEEE
T ss_conf 9998998---8709999999999996-699889987
No 80
>2j0s_A ATP-dependent RNA helicase DDX48; mRNA processing, phosphorylation, rRNA processing, mRNA splicing, mRNA transport; HET: ANP; 2.21A {Homo sapiens} SCOP: c.37.1.19 c.37.1.19 PDB: 2j0q_A* 2hyi_C* 3ex7_C* 2xb2_A* 2hxy_A 2j0u_A 2j0u_B 2zu6_A
Probab=82.89 E-value=2.5 Score=21.38 Aligned_cols=60 Identities=12% Similarity=0.215 Sum_probs=44.3
Q ss_pred CCCCEEEEEE-CCCCHHHHHHHHHHHCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCC-EEEECHH
Q ss_conf 1686389874-155357899988740100001221433234898999999997564798-7998546
Q gi|254780401|r 220 LSGKKVLAFS-GIADTEKFFTTVRQLGALIEQCYSFGDHAHLSDKKIAYLLDQAQQKGL-ILVTTAK 284 (338)
Q Consensus 220 l~~k~v~afs-GIa~P~~F~~~L~~~g~~i~~~~~fpDHh~ys~~dl~~i~~~a~~~~~-~iiTTEK 284 (338)
..+++++.|| .+..-+...+.|.+.|+.+.. =|...+..+-+.+.+..++... .+|+|.=
T Consensus 274 ~~~~k~iIF~~t~~~~~~l~~~L~~~g~~v~~-----lh~~~~~~~r~~~~~~f~~g~~~vlvaT~~ 335 (410)
T 2j0s_A 274 LTITQAVIFCNTKRKVDWLTEKMREANFTVSS-----MHGDMPQKERESIMKEFRSGASRVLISTDV 335 (410)
T ss_dssp HTSSEEEEECSSHHHHHHHHHHHHHTTCCCEE-----ECTTSCHHHHHHHHHHHHHTSSCEEEECGG
T ss_pred CCCCCEEEEECCHHHHHHHHHHHHHCCCCEEE-----EECCCCHHHHHHHHHHHHHCCCCEEEECCC
T ss_conf 47884799966689999999999878998899-----967898789999999987357979998260
No 81
>3kqn_A Serine protease/ntpase/helicase NS3; helicase-substrate transition-state complex, HCV, NS3 protein, helicase, DNA-binding; HET: ADP; 2.05A {Hepatitis c virus} PDB: 3kql_A* 3kqu_A* 3kqh_A 3kqk_A 2zjo_A* 8ohm_A 1a1v_A* 2f55_A 1hei_A 1jr6_A 1onb_A
Probab=82.51 E-value=0.79 Score=24.97 Aligned_cols=33 Identities=15% Similarity=0.256 Sum_probs=23.0
Q ss_pred CCCCCEEEEEE-CCCCHHHHHHHHHHHCCCCCCC
Q ss_conf 11686389874-1553578999887401000012
Q gi|254780401|r 219 DLSGKKVLAFS-GIADTEKFFTTVRQLGALIEQC 251 (338)
Q Consensus 219 ~l~~k~v~afs-GIa~P~~F~~~L~~~g~~i~~~ 251 (338)
.+++.+.+.|| .+..=+.....|++.|+++...
T Consensus 170 ~~k~gk~lVFv~Sk~eve~La~~L~~~g~~v~~l 203 (437)
T 3kqn_A 170 TIKGGRHLIFCHSKKKCDELAAKLSGLGLNAVAY 203 (437)
T ss_dssp GTSSSEEEEECSSHHHHHHHHHHHHHTTCCEEEE
T ss_pred HHCCCCEEEECCCHHHHHHHHHHHHHCCCCEEEC
T ss_conf 4246888999598999999999998589949976
No 82
>2whx_A Serine protease/ntpase/helicase NS3; transcription, hydrolase, ATP-binding, reticulum, nucleotidyltransferase, multifunctional enzyme; HET: ADP; 2.20A {Dengue virus 4} PDB: 2vbc_A 2wzq_A
Probab=82.29 E-value=0.88 Score=24.66 Aligned_cols=53 Identities=19% Similarity=0.167 Sum_probs=32.6
Q ss_pred CCEEEEEE-CCCCHHHHHHHHHHHCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCC-CEEEECH
Q ss_conf 86389874-15535789998874010000122143323489899999999756479-8799854
Q gi|254780401|r 222 GKKVLAFS-GIADTEKFFTTVRQLGALIEQCYSFGDHAHLSDKKIAYLLDQAQQKG-LILVTTA 283 (338)
Q Consensus 222 ~k~v~afs-GIa~P~~F~~~L~~~g~~i~~~~~fpDHh~ys~~dl~~i~~~a~~~~-~~iiTTE 283 (338)
.++++.|| ++..=+.+.+.|++.|+++... |-...++++.+ .+... ..||+|-
T Consensus 355 ~gktLVFv~S~~~aeeLA~~L~~~G~~v~~L-----Hg~l~~~e~~k----~k~g~~~IIVATd 409 (618)
T 2whx_A 355 QGKTVWFVPSIKAGNDIANCLRKSGKRVIQL-----SRKTFDTEYPK----TKLTDWDFVVTTD 409 (618)
T ss_dssp CSCEEEECSSHHHHHHHHHHHHHTTCCEEEE-----CTTTHHHHTTH----HHHSCCSEEEECG
T ss_pred CCCEEEEECCHHHHHHHHHHHHHCCCEEEEE-----CCCCCHHHHHH----CCCCCCCEEEECH
T ss_conf 8999999798899999999997589809991-----79998788723----5689963999906
No 83
>1bif_A 6-phosphofructo-2-kinase/ fructose-2,6- bisphosphatase; transferase (phospho), hydrolase (phospho), glycolysis, bifunctional enzyme; HET: ATG; 2.00A {Rattus norvegicus} SCOP: c.37.1.7 c.60.1.4 PDB: 3bif_A* 2bif_A* 1k6m_A* 1c80_A* 1c7z_A* 1c81_A* 1tip_A* 1fbt_A
Probab=81.84 E-value=0.51 Score=26.37 Aligned_cols=42 Identities=21% Similarity=0.329 Sum_probs=32.4
Q ss_pred CCCEEEECCEEECCCCCCHHHHHHHHHHHHCCCCEEEEEEC-CCCC
Q ss_conf 89889982300078887489999999985247315987604-5787
Q gi|254780401|r 43 PIPVICVGGFVMGGTGKTPTALAIAKAVIDKNLKPGFLSRG-YGRK 87 (338)
Q Consensus 43 ~~pVI~VGNitvGGtGKTP~v~~l~~~l~~~g~~~~ilsRG-Yg~~ 87 (338)
|.-||.|| .=|+|||-++..|+++|.-.|++.-|.+=| |+|+
T Consensus 39 p~vivmvG---LPa~GKS~ia~~l~r~L~~~g~~~~vf~~~~~Rr~ 81 (469)
T 1bif_A 39 PTLIVMVG---LPARGKTYISKKLTRYLNFIGVPTREFNVGQYRRD 81 (469)
T ss_dssp CEEEEEEC---CTTSSHHHHHHHHHHHHHHTTCCEEEEEHHHHHHH
T ss_pred CEEEEEEC---CCCCCHHHHHHHHHHHHHCCCCCEEEECHHHHHHH
T ss_conf 95999989---99999999999999997127876288341888987
No 84
>2qmo_A Dethiobiotin synthetase; structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG; 1.47A {Helicobacter pylori 26695} PDB: 3mle_A*
Probab=81.72 E-value=0.86 Score=24.73 Aligned_cols=26 Identities=27% Similarity=0.212 Sum_probs=24.1
Q ss_pred CCCCCCHHHHHHHHHHHHCCCCEEEE
Q ss_conf 78887489999999985247315987
Q gi|254780401|r 55 GGTGKTPTALAIAKAVIDKNLKPGFL 80 (338)
Q Consensus 55 GGtGKTP~v~~l~~~l~~~g~~~~il 80 (338)
.|.|||-++..|++.|+++|++|+..
T Consensus 11 t~vGKT~vs~~L~~~L~~~G~~V~~~ 36 (220)
T 2qmo_A 11 TNAGKTTCARLLAQYCNACGVKTILL 36 (220)
T ss_dssp TTSCHHHHHHHHHHHHHHTTCCEEEE
T ss_pred CCCCHHHHHHHHHHHHHHCCCEEEEE
T ss_conf 99879999999999999789969997
No 85
>2yvu_A Probable adenylyl-sulfate kinase; transferase, structural genomics, NPPSFA, national project on protein structural and functional analyses; 2.10A {Aeropyrum pernix K1}
Probab=81.56 E-value=0.85 Score=24.77 Aligned_cols=32 Identities=22% Similarity=0.342 Sum_probs=26.7
Q ss_pred EECCCCCCHHHHHHHHHHHHCCCCEEEEEECC
Q ss_conf 00788874899999999852473159876045
Q gi|254780401|r 53 VMGGTGKTPTALAIAKAVIDKNLKPGFLSRGY 84 (338)
Q Consensus 53 tvGGtGKTP~v~~l~~~l~~~g~~~~ilsRGY 84 (338)
=.-|||||-++..|++.|...++.+..+.+..
T Consensus 20 G~~GSGKSTlAk~La~~L~~~~~~~~~~~~~~ 51 (186)
T 2yvu_A 20 GLPGSGKTTIATRLADLLQKEGYRVEVLDGDW 51 (186)
T ss_dssp CCTTSSHHHHHHHHHHHHHHTTCCEEEEEHHH
T ss_pred CCCCCCHHHHHHHHHHHHHHCCCCCEEEHHHH
T ss_conf 99999999999999999842389711100777
No 86
>2wwf_A Thymidilate kinase, putative; transferase, malaria; HET: TMP ADP; 1.89A {Plasmodium falciparum} PDB: 2wwg_A* 2wwh_A* 2wwi_A*
Probab=81.43 E-value=0.96 Score=24.39 Aligned_cols=35 Identities=14% Similarity=0.193 Sum_probs=27.8
Q ss_pred CCEEEECCEEECCCCCCHHHHHHHHHHHHCCCCEEEEE
Q ss_conf 98899823000788874899999999852473159876
Q gi|254780401|r 44 IPVICVGGFVMGGTGKTPTALAIAKAVIDKNLKPGFLS 81 (338)
Q Consensus 44 ~pVI~VGNitvGGtGKTP~v~~l~~~l~~~g~~~~ils 81 (338)
.-|...|+ -|+|||-.+..|++.|..+|+.+..+.
T Consensus 11 ~~I~ieG~---dGsGKtT~~~~L~e~L~~~g~~v~~~~ 45 (212)
T 2wwf_A 11 KFIVFEGL---DRSGKSTQSKLLVEYLKNNNVEVKHLY 45 (212)
T ss_dssp CEEEEEES---TTSSHHHHHHHHHHHHHHTTCCEEEEE
T ss_pred EEEEEECC---CCCCHHHHHHHHHHHHHHCCCCEEEEE
T ss_conf 59999899---888999999999999987799668998
No 87
>2gk6_A Regulator of nonsense transcripts 1; UPF1, helicase, NMD, hydrolase; HET: ADP; 2.40A {Homo sapiens} PDB: 2gjk_A* 2gk7_A
Probab=81.32 E-value=1.1 Score=24.00 Aligned_cols=30 Identities=27% Similarity=0.301 Sum_probs=21.8
Q ss_pred EEEC--CCCCCHHHHHHHHHHHHCCC-CEEEEE
Q ss_conf 0007--88874899999999852473-159876
Q gi|254780401|r 52 FVMG--GTGKTPTALAIAKAVIDKNL-KPGFLS 81 (338)
Q Consensus 52 itvG--GtGKTP~v~~l~~~l~~~g~-~~~ils 81 (338)
|..| |||||-++..++..|..++. ++.+.+
T Consensus 199 lI~GPPGTGKT~ti~~ii~~l~~~~~~kILv~a 231 (624)
T 2gk6_A 199 LIQGPPGTGKTVTSATIVYHLARQGNGPVLVCA 231 (624)
T ss_dssp EEECCTTSCHHHHHHHHHHHHHTSSSCCEEEEE
T ss_pred EEECCCCCCHHHHHHHHHHHHHHCCCCCEEEEE
T ss_conf 998899998308999999999970689799993
No 88
>1rz3_A Hypothetical protein rbstp0775; MCSG, structural genomics, PSI, protein structure initiative; 1.90A {Geobacillus stearothermophilus} SCOP: c.37.1.6
Probab=80.67 E-value=1.1 Score=23.93 Aligned_cols=40 Identities=10% Similarity=0.138 Sum_probs=30.8
Q ss_pred CCE-EEECCEEECCCCCCHHHHHHHHHHHHCCCCEEEEEECCC
Q ss_conf 988-998230007888748999999998524731598760457
Q gi|254780401|r 44 IPV-ICVGGFVMGGTGKTPTALAIAKAVIDKNLKPGFLSRGYG 85 (338)
Q Consensus 44 ~pV-I~VGNitvGGtGKTP~v~~l~~~l~~~g~~~~ilsRGYg 85 (338)
-|. |+|. =--|+|||-++.+|++.+...|..+.+++..+-
T Consensus 21 ~~~iIgI~--G~~GSGKSTla~~L~~~l~~~~~~~~~~~~~~~ 61 (201)
T 1rz3_A 21 GRLVLGID--GLSRSGKTTLANQLSQTLREQGISVCVFHMDDH 61 (201)
T ss_dssp SSEEEEEE--ECTTSSHHHHHHHHHHHHHHTTCCEEEEEGGGG
T ss_pred CCEEEEEE--CCCCCCHHHHHHHHHHHHCCCCCCEEEECHHHC
T ss_conf 98899988--989889999999999983524776022010101
No 89
>2wtz_A UDP-N-acetylmuramoyl-L-alanyl-D-glutamate- -2,6-diaminopimelate ligase; nucleotide-binding, peptidoglycan synthesis, MURE, cytoplasm; HET: KCX UAG; 3.00A {Mycobacterium tuberculosis}
Probab=80.61 E-value=3 Score=20.83 Aligned_cols=41 Identities=20% Similarity=0.250 Sum_probs=33.0
Q ss_pred CCCCCCEEEECCEEECCCCCCHHHHHHHHHHHHCCCCEEEEEECC
Q ss_conf 338898899823000788874899999999852473159876045
Q gi|254780401|r 40 LHAPIPVICVGGFVMGGTGKTPTALAIAKAVIDKNLKPGFLSRGY 84 (338)
Q Consensus 40 ~~~~~pVI~VGNitvGGtGKTP~v~~l~~~l~~~g~~~~ilsRGY 84 (338)
...+.+||.| +|=.|||-++.+|...|+..|++++..+-.+
T Consensus 142 p~~~l~vI~V----TGTnGKTTT~~~l~~iL~~~G~~~~~~~s~~ 182 (535)
T 2wtz_A 142 PSERLTVIGI----TGTSGKTTTTYLVEAGLRAAGRVAGLIGTIG 182 (535)
T ss_dssp GGGSSEEEEE----ESSSCHHHHHHHHHHHHHHTTCCEEEESSSC
T ss_pred HHHCCEEEEE----ECCCCHHHHHHHHHHHHHHCCCCCCCCCCCC
T ss_conf 1007819999----6999889999999999985397401247731
No 90
>3a4m_A L-seryl-tRNA(SEC) kinase; P-loop motif, walker A motif, ATP binding motif, ATP- binding, nucleotide-binding, transferase; HET: ADP; 1.79A {Methanocaldococcus jannaschii} PDB: 3a4l_A* 3a4n_A 3add_A* 3adc_A* 3adb_A*
Probab=79.86 E-value=1 Score=24.19 Aligned_cols=34 Identities=26% Similarity=0.342 Sum_probs=27.2
Q ss_pred EEEECCEEECCCCCCHHHHHHHHHHHHCCCCEEEEEE
Q ss_conf 8998230007888748999999998524731598760
Q gi|254780401|r 46 VICVGGFVMGGTGKTPTALAIAKAVIDKNLKPGFLSR 82 (338)
Q Consensus 46 VI~VGNitvGGtGKTP~v~~l~~~l~~~g~~~~ilsR 82 (338)
|+.+|- =|+|||-++..|++.|...+..+.+++.
T Consensus 7 Iil~G~---PGSGKST~A~~L~~~l~~~~~~~~~i~~ 40 (260)
T 3a4m_A 7 IILTGL---PGVGKSTFSKNLAKILSKNNIDVIVLGS 40 (260)
T ss_dssp EEEECC---TTSSHHHHHHHHHHHHHHTTCCEEEECT
T ss_pred EEEECC---CCCCHHHHHHHHHHHHHHCCCCEEEECH
T ss_conf 998899---9998899999999999852999399780
No 91
>3c8u_A Fructokinase; YP_612366.1, putative fructose transport system kinase, structural genomics, joint center for structural genomics, JCSG; 1.95A {Silicibacter SP}
Probab=79.79 E-value=1.5 Score=23.09 Aligned_cols=38 Identities=18% Similarity=0.337 Sum_probs=29.8
Q ss_pred CCEEEECCEEECCCCCCHHHHHHHHHHHHCCCCEEEEEEC
Q ss_conf 9889982300078887489999999985247315987604
Q gi|254780401|r 44 IPVICVGGFVMGGTGKTPTALAIAKAVIDKNLKPGFLSRG 83 (338)
Q Consensus 44 ~pVI~VGNitvGGtGKTP~v~~l~~~l~~~g~~~~ilsRG 83 (338)
-.||+|.- .-|+|||-++..|++.|...+..+.+++..
T Consensus 22 ~~iIgI~G--~~gSGKSTla~~L~~~l~~~~~~~~~i~~d 59 (208)
T 3c8u_A 22 RQLVALSG--APGSGKSTLSNPLAAALSAQGLPAEVVPMD 59 (208)
T ss_dssp CEEEEEEC--CTTSCTHHHHHHHHHHHHHTTCCEEEEESG
T ss_pred CEEEEEEC--CCCCCHHHHHHHHHHHHHHCCCCEEEEECC
T ss_conf 68999889--898999999999999973428981575045
No 92
>3eag_A UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl- MESO-diaminopimelate ligase; structural genomics, PSI-2, protein structure initiative; 2.55A {Neisseria meningitidis MC58}
Probab=79.59 E-value=1.6 Score=22.81 Aligned_cols=20 Identities=20% Similarity=0.252 Sum_probs=12.2
Q ss_pred ECCCCCCHHHHHHHHHHHHCCCCE
Q ss_conf 078887489999999985247315
Q gi|254780401|r 54 MGGTGKTPTALAIAKAVIDKNLKP 77 (338)
Q Consensus 54 vGGtGKTP~v~~l~~~l~~~g~~~ 77 (338)
+||+|-.. ||++|.++|++|
T Consensus 12 igg~Gms~----lA~~L~~~G~~V 31 (326)
T 3eag_A 12 IGGTFMGG----LAAIAKEAGFEV 31 (326)
T ss_dssp CCSHHHHH----HHHHHHHTTCEE
T ss_pred ECHHHHHH----HHHHHHHCCCEE
T ss_conf 58889999----999999789929
No 93
>1nks_A Adenylate kinase; thermophilic, transferase; HET: AMP ADP; 2.57A {Sulfolobus acidocaldarius} SCOP: c.37.1.1
Probab=79.48 E-value=0.99 Score=24.29 Aligned_cols=28 Identities=11% Similarity=0.279 Sum_probs=24.8
Q ss_pred CCCCCCHHHHHHHHHHHHCCCCEEEEEE
Q ss_conf 7888748999999998524731598760
Q gi|254780401|r 55 GGTGKTPTALAIAKAVIDKNLKPGFLSR 82 (338)
Q Consensus 55 GGtGKTP~v~~l~~~l~~~g~~~~ilsR 82 (338)
-|+|||-++..|++.|...++....++-
T Consensus 10 ~GsGKsT~~~~L~~~l~~~~~~~~~~~~ 37 (194)
T 1nks_A 10 PGVGKSTVLAKVKEILDNQGINNKIINY 37 (194)
T ss_dssp TTSCHHHHHHHHHHHHHTTTCCEEEEEH
T ss_pred CCCCHHHHHHHHHHHHHHCCCCEEEEEC
T ss_conf 9979899999999999875997799957
No 94
>1odf_A YGR205W, hypothetical 33.3 kDa protein in ADE3-Ser2 intergenic region; yeast protein, ATP binding protein; 2.25A {Saccharomyces cerevisiae} SCOP: c.37.1.6
Probab=78.69 E-value=3.5 Score=20.42 Aligned_cols=36 Identities=28% Similarity=0.431 Sum_probs=25.9
Q ss_pred CC-EEEECCEEECCCCCCHHHHHHHHHHHHC---CCCEEEEE
Q ss_conf 98-8998230007888748999999998524---73159876
Q gi|254780401|r 44 IP-VICVGGFVMGGTGKTPTALAIAKAVIDK---NLKPGFLS 81 (338)
Q Consensus 44 ~p-VI~VGNitvGGtGKTP~v~~l~~~l~~~---g~~~~ils 81 (338)
.| +|.|. =.=|+|||-++.+|++.|.+. +.+++++|
T Consensus 30 ~P~iIgia--G~~GSGKSTla~~l~~~l~~~~~~~~~v~~iS 69 (290)
T 1odf_A 30 CPLFIFFS--GPQGSGKSFTSIQIYNHLMEKYGGEKSIGYAS 69 (290)
T ss_dssp SCEEEEEE--CCTTSSHHHHHHHHHHHHHHHHGGGSCEEEEE
T ss_pred CCEEEEEE--CCCCCCHHHHHHHHHHHHHHHCCCCCEEEEEC
T ss_conf 99899967--89878899999999999997528887079963
No 95
>1hv8_A Putative ATP-dependent RNA helicase MJ0669; RNA-binding protein, ATPase, RNA binding protein; 3.00A {Methanocaldococcus jannaschii} SCOP: c.37.1.19 c.37.1.19
Probab=78.58 E-value=3.5 Score=20.40 Aligned_cols=59 Identities=24% Similarity=0.272 Sum_probs=40.7
Q ss_pred CCCEEEEEE-CCCCHHHHHHHHHHHCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCC-EEEECHH
Q ss_conf 686389874-155357899988740100001221433234898999999997564798-7998546
Q gi|254780401|r 221 SGKKVLAFS-GIADTEKFFTTVRQLGALIEQCYSFGDHAHLSDKKIAYLLDQAQQKGL-ILVTTAK 284 (338)
Q Consensus 221 ~~k~v~afs-GIa~P~~F~~~L~~~g~~i~~~~~fpDHh~ys~~dl~~i~~~a~~~~~-~iiTTEK 284 (338)
.+.+++.|| .+..-+...+.|++.++.... =|...+..+-+.+.+..++... .+|+|.-
T Consensus 237 ~~~~~lIF~~~~~~~~~~~~~L~~~~~~~~~-----~h~~l~~~~r~~i~~~f~~g~~~vlVaT~~ 297 (367)
T 1hv8_A 237 KEFYGLVFCKTKRDTKELASMLRDIGFKAGA-----IHGDLSQSQREKVIRLFKQKKIRILIATDV 297 (367)
T ss_dssp TTCCEEEECSSHHHHHHHHHHHHHTTCCEEE-----ECSSSCHHHHHHHHHHHHTTSSSEEEECTT
T ss_pred CCCCEEEEECCHHHHHHHHHHHHHCCCCEEE-----EECCCCHHHHHHHHHHHCCCCCEEEEEECH
T ss_conf 6863799976647799999999975997254-----416885666532110101686318996212
No 96
>1f0k_A MURG, UDP-N-acetylglucosamine-N-acetylmuramyl- (pentapeptide) pyrophosphoryl-undecaprenol...; rossmann fold, transferase; 1.90A {Escherichia coli} SCOP: c.87.1.2 PDB: 1nlm_A*
Probab=77.69 E-value=1.6 Score=22.90 Aligned_cols=33 Identities=24% Similarity=0.412 Sum_probs=25.9
Q ss_pred EECCC-CCCHHHHHHHHHHHHCCCCEEEEEECCC
Q ss_conf 00788-8748999999998524731598760457
Q gi|254780401|r 53 VMGGT-GKTPTALAIAKAVIDKNLKPGFLSRGYG 85 (338)
Q Consensus 53 tvGGt-GKTP~v~~l~~~l~~~g~~~~ilsRGYg 85 (338)
++||| |-.--++.|++.|+++|+.|.+++.+.+
T Consensus 12 ~t~GtGGHi~~a~ala~~L~~~g~eV~~i~~~~~ 45 (364)
T 1f0k_A 12 MAGGTGGHVFPGLAVAHHLMAQGWQVRWLGTADR 45 (364)
T ss_dssp ECCSSHHHHHHHHHHHHHHHTTTCEEEEEECTTS
T ss_pred ECCCCHHHHHHHHHHHHHHHHCCCEEEEEEECCC
T ss_conf 8689799999999999999968898999983880
No 97
>1l8q_A Chromosomal replication initiator protein DNAA; AAA+, helix-turn-helix, nucleotide-binding, DNA binding, replication initiation; HET: ADP; 2.70A {Aquifex aeolicus} SCOP: a.4.12.2 c.37.1.20 PDB: 2hcb_A*
Probab=77.33 E-value=1.6 Score=22.90 Aligned_cols=34 Identities=26% Similarity=0.383 Sum_probs=28.0
Q ss_pred CEEEECCEEECCCCCCHHHHHHHHHHHHCCCCEEEEE
Q ss_conf 8899823000788874899999999852473159876
Q gi|254780401|r 45 PVICVGGFVMGGTGKTPTALAIAKAVIDKNLKPGFLS 81 (338)
Q Consensus 45 pVI~VGNitvGGtGKTP~v~~l~~~l~~~g~~~~ils 81 (338)
|+.-.|.- |+|||=+..++++.+.+.|.++..++
T Consensus 39 pl~l~G~~---G~GKTHLl~Ai~~~~~~~~~~v~y~~ 72 (324)
T 1l8q_A 39 PIFIYGSV---GTGKTHLLQAAGNEAKKRGYRVIYSS 72 (324)
T ss_dssp SEEEECSS---SSSHHHHHHHHHHHHHHTTCCEEEEE
T ss_pred EEEEECCC---CCCHHHHHHHHHHHHHHCCCCEEEEE
T ss_conf 18988899---99899999999999985499759944
No 98
>3i6i_A Putative leucoanthocyanidin reductase 1; rossmann fold, short chain dehydrogenase reductase, flavonoid, oxidoreductase; HET: NDP; 1.75A {Vitis vinifera} PDB: 3i5m_A 3i52_A* 3i6q_A*
Probab=76.55 E-value=3.4 Score=20.50 Aligned_cols=33 Identities=27% Similarity=0.301 Sum_probs=27.3
Q ss_pred EEECCCCCCHHHHHHHHHHHHCCCCEEEEEECCCC
Q ss_conf 00078887489999999985247315987604578
Q gi|254780401|r 52 FVMGGTGKTPTALAIAKAVIDKNLKPGFLSRGYGR 86 (338)
Q Consensus 52 itvGGtGKTP~v~~l~~~l~~~g~~~~ilsRGYg~ 86 (338)
+.+|||| -+=.++++.|.++|+++.+++|...+
T Consensus 14 lV~GaTG--~iG~~lv~~Ll~~g~~V~vl~R~~~~ 46 (346)
T 3i6i_A 14 LIAGATG--FIGQFVATASLDAHRPTYILARPGPR 46 (346)
T ss_dssp EEECTTS--HHHHHHHHHHHHTTCCEEEEECSSCC
T ss_pred EEECCCC--HHHHHHHHHHHHCCCCEEEEECCCCC
T ss_conf 9989896--89999999999689948999899987
No 99
>3bgw_A DNAB-like replicative helicase; ATPase, replication; 3.91A {Bacillus phage SPP1}
Probab=76.46 E-value=1.7 Score=22.61 Aligned_cols=32 Identities=34% Similarity=0.370 Sum_probs=26.1
Q ss_pred CCEEE--C--CCCCCHHHHHHHHHHHHCCCCEEEEE
Q ss_conf 23000--7--88874899999999852473159876
Q gi|254780401|r 50 GGFVM--G--GTGKTPTALAIAKAVIDKNLKPGFLS 81 (338)
Q Consensus 50 GNitv--G--GtGKTP~v~~l~~~l~~~g~~~~ils 81 (338)
|++++ | |.|||-+++-++......|.+|++.|
T Consensus 197 G~L~viaarpg~GKT~~al~la~~~~~~g~~v~~~S 232 (444)
T 3bgw_A 197 RNFVLIAARPSMGKTAFALKQAKNMSDNDDVVNLHS 232 (444)
T ss_dssp SCEEEEEECSSSSHHHHHHHHHHHHHHTTCEEEEEC
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHHHCCCCCHHCCH
T ss_conf 876998507998747999999997531255131051
No 100
>2axn_A 6-phosphofructo-2-kinase/fructose-2,6- biphosphatase 3 (6PF-2-K/FRU- 2,6-P2ASE brain/placenta-type...; bifunctional enzyme, EDTA complex; HET: F6P EDT ADP; 2.10A {Homo sapiens} PDB: 2dwo_A* 2dwp_A* 2i1v_B*
Probab=75.70 E-value=1.4 Score=23.32 Aligned_cols=40 Identities=20% Similarity=0.348 Sum_probs=32.4
Q ss_pred EEEECCEEECCCCCCHHHHHHHHHHHHCCCCEEEEEEC-CCCCC
Q ss_conf 89982300078887489999999985247315987604-57877
Q gi|254780401|r 46 VICVGGFVMGGTGKTPTALAIAKAVIDKNLKPGFLSRG-YGRKS 88 (338)
Q Consensus 46 VI~VGNitvGGtGKTP~v~~l~~~l~~~g~~~~ilsRG-Yg~~~ 88 (338)
||.|| .=+.|||=++-.|+++|.-.|++.-|-+=| |+|+.
T Consensus 38 ivmVG---LPArGKs~ia~kl~ryL~w~g~~~kvFn~g~~RR~~ 78 (520)
T 2axn_A 38 IVMVG---LPARGKTYISKKLTRYLNWIGVPTKVFNVGEYRREA 78 (520)
T ss_dssp EEEEC---CTTSSHHHHHHHHHHHHHHTTCCEEEEEHHHHHHHH
T ss_pred EEEEC---CCCCCHHHHHHHHHHHHHHCCCCEEEECCHHHHHHH
T ss_conf 99978---998988899999999863158872795261788875
No 101
>3fro_A GLGA glycogen synthase; glycosyltransferase family, UDP/ADP-glucose-glycogen synthase, two rossman folds, transferase; HET: NHF; 2.50A {Pyrococcus abyssi} PDB: 2bis_A*
Probab=75.57 E-value=1.8 Score=22.44 Aligned_cols=33 Identities=21% Similarity=0.232 Sum_probs=28.3
Q ss_pred EECCCCCCHHHHHHHHHHHHCCCCEEEEEECCCCC
Q ss_conf 00788874899999999852473159876045787
Q gi|254780401|r 53 VMGGTGKTPTALAIAKAVIDKNLKPGFLSRGYGRK 87 (338)
Q Consensus 53 tvGGtGKTP~v~~l~~~l~~~g~~~~ilsRGYg~~ 87 (338)
.+||.| ..|..||+.|.++|+.|.|++..|..-
T Consensus 16 ~~GG~~--~~~~~La~~L~~~Gh~V~vvtp~~~~~ 48 (439)
T 3fro_A 16 KVGGLA--EALTAISEALASLGHEVLVFTPSHGRF 48 (439)
T ss_dssp CSSSHH--HHHHHHHHHHHHTTCEEEEEEECTTCS
T ss_pred CCCCHH--HHHHHHHHHHHHCCCEEEEEECCCCCC
T ss_conf 678799--999999999997699899991589875
No 102
>2pez_A Bifunctional 3'-phosphoadenosine 5'- phosphosulfate synthetase 1 (PAPS synthetase...; NMP-kinase fold, protein in complex with nucleic acid; HET: GGZ DAT; 1.40A {Homo sapiens} PDB: 2pey_A* 2ax4_A*
Probab=75.35 E-value=1.7 Score=22.64 Aligned_cols=29 Identities=21% Similarity=0.315 Sum_probs=24.6
Q ss_pred CCCCCCHHHHHHHHHHHHCCCCEEEEEEC
Q ss_conf 78887489999999985247315987604
Q gi|254780401|r 55 GGTGKTPTALAIAKAVIDKNLKPGFLSRG 83 (338)
Q Consensus 55 GGtGKTP~v~~l~~~l~~~g~~~~ilsRG 83 (338)
=|||||-+...|++.|...++....+.+.
T Consensus 14 ~GsGKSTia~~La~~L~~~~~~~~~~~~~ 42 (179)
T 2pez_A 14 SGAGKTTVSMALEEYLVCHGIPCYTLDGD 42 (179)
T ss_dssp TTSSHHHHHHHHHHHHHHTTCCEEEEEHH
T ss_pred CCCCHHHHHHHHHHHHHHCCCCCEECCHH
T ss_conf 99899999999999974458874100189
No 103
>1sq5_A Pantothenate kinase; P-loop, transferase; HET: PAU ADP; 2.20A {Escherichia coli} SCOP: c.37.1.6 PDB: 1esm_A* 1esn_A*
Probab=75.18 E-value=4.3 Score=19.76 Aligned_cols=163 Identities=17% Similarity=0.214 Sum_probs=71.0
Q ss_pred HHHHHHHHHHHH-------HHHHHHCCCCCCCCCEEEECCEEECCCCCCHHHHHHHHHHHHC--CCCEEEEEE-CCCCCC
Q ss_conf 999999999999-------9997404643388988998230007888748999999998524--731598760-457877
Q gi|254780401|r 19 LYPISWIYSFIS-------SKLMKRGQRLHAPIPVICVGGFVMGGTGKTPTALAIAKAVIDK--NLKPGFLSR-GYGRKS 88 (338)
Q Consensus 19 L~Pls~iy~~~~-------~~~~~~~~~~~~~~pVI~VGNitvGGtGKTP~v~~l~~~l~~~--g~~~~ilsR-GYg~~~ 88 (338)
..|||-+-.+-. .....+........|+| ||=-=.-|+|||-++..|...|.+. +.++.++|= ||=
T Consensus 47 y~pl~~l~~~~~~~~~~~~~~~~~fl~~~~~k~P~I-IGIaG~sgsGKSTla~~L~~lL~~~~~~~~v~lis~D~F~--- 122 (308)
T 1sq5_A 47 YLPLSRLLNFYISSNLRRQAVLEQFLGTNGQRIPYI-ISIAGSVAVGKSTTARVLQALLSRWPEHRRVELITTDGFL--- 122 (308)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHTCC-CCCCEE-EEEEECTTSSHHHHHHHHHHHHTTSTTCCCEEEEEGGGGB---
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCEE-EEEECCCCCCHHHHHHHHHHHHHHHCCCCCEEEEECCCCC---
T ss_conf 999999999999999999999999846889999689-9998999887999999999997101699965998535152---
Q ss_pred CCCEEEECCCCCHHHHCCHHHHHHHCCCCCCCCCHHHHHHHHCCC-CCCEEE--EC----CCCC-CCCCCCEEEEEEECC
Q ss_conf 775587145678877042123322057634652012256641024-574799--71----8322-344123069999618
Q gi|254780401|r 89 RISFRVDLEKHSAYDVGDEPLLLARRAVTIVTSDRKIGVQMLLQE-GVDIII--MD----DGFH-SADLQADFSLIVVNS 160 (338)
Q Consensus 89 ~~~~~v~~~~~~~~~vGDEp~lla~~~pv~V~~~R~~~~~~~~~~-~~diiI--lD----DGfQ-h~~l~rdl~Ivl~d~ 160 (338)
.+..+--.+.++-.+-+|-..+-++....-...+. +.++.+ -| |..- ...+...-+|+++.+
T Consensus 123 ----------~~~~~l~~~~l~~~~g~Pes~D~~~l~~~L~~lk~g~~~v~~P~yd~~~~d~~~~~~~~~~~pdIiIvEG 192 (308)
T 1sq5_A 123 ----------HPNQVLKERGLMKKKGFPESYDMHRLVKFVSDLKSGVPNVTAPVYSHLIYDVIPDGDKTVVQPDILILEG 192 (308)
T ss_dssp ----------CCHHHHHHHTCTTCTTSGGGBCHHHHHHHHHHHTTTCSCEEECCEETTTTEECTTCCEEEC-CCEEEEEC
T ss_pred ----------CCHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCEECCCCCCCCCCCCCCCCEEECCCCEEEECC
T ss_conf ----------8806888716766689735514999999999998299734356310654556788736848999899888
Q ss_pred CCCCCCCCCCCCHHHHHCCHHHHHHHHHHHHCCCCHHH
Q ss_conf 43356655376136521002556651454420441245
Q gi|254780401|r 161 HRGLGNGLVFPAGPLRVPLSRQLSYVDAILYVGNKKNV 198 (338)
Q Consensus 161 ~~~~gn~~llPaGpLREp~~~~l~rad~vi~~~~~~~~ 198 (338)
..-+-.....+.++-|.-++ .-.|+-|+..++.+.
T Consensus 193 l~vL~~~~~~~~~~~~~~l~---d~~D~~Ifvda~~~~ 227 (308)
T 1sq5_A 193 LNVLQSGMDYPHDPHHVFVS---DFVDFSIYVDAPEDL 227 (308)
T ss_dssp TTTTCCGGGCTTSCCSSCGG---GGCSEEEEEECCHHH
T ss_pred EEECCCCCCCCCCCCHHHHH---HHHHEEEEECCCHHH
T ss_conf 10002641001221023467---754300012289999
No 104
>1cr0_A DNA primase/helicase; RECA-type protein fold, transferase; HET: DNA; 2.30A {Enterobacteria phage T7} SCOP: c.37.1.11 PDB: 1cr1_A* 1cr2_A* 1cr4_A* 1e0j_A* 1e0k_A*
Probab=74.97 E-value=2.6 Score=21.36 Aligned_cols=29 Identities=21% Similarity=0.078 Sum_probs=23.6
Q ss_pred ECCCCCCHHHHHHHHHH-HHCCCCEEEEEE
Q ss_conf 07888748999999998-524731598760
Q gi|254780401|r 54 MGGTGKTPTALAIAKAV-IDKNLKPGFLSR 82 (338)
Q Consensus 54 vGGtGKTP~v~~l~~~l-~~~g~~~~ilsR 82 (338)
.-|+|||-++..++-.+ ...|++++++|-
T Consensus 43 ~~G~GKS~~~~~la~~~a~~~g~~vl~~s~ 72 (296)
T 1cr0_A 43 GSGMGKSTFVRQQALQWGTAMGKKVGLAML 72 (296)
T ss_dssp STTSSHHHHHHHHHHHHHHTSCCCEEEEES
T ss_pred CCCCHHHHHHHHHHHHHHHHCCCCEEEEEE
T ss_conf 899749999999999999864787899962
No 105
>1s2m_A Putative ATP-dependent RNA helicase DHH1; ATP-binding, RNA-binding, RNA binding protein; 2.10A {Saccharomyces cerevisiae} SCOP: c.37.1.19 c.37.1.19 PDB: 2wax_A* 2way_A
Probab=73.91 E-value=4.6 Score=19.55 Aligned_cols=59 Identities=15% Similarity=0.195 Sum_probs=39.8
Q ss_pred CCCEEEEEE-CCCCHHHHHHHHHHHCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCC-EEEECHH
Q ss_conf 686389874-155357899988740100001221433234898999999997564798-7998546
Q gi|254780401|r 221 SGKKVLAFS-GIADTEKFFTTVRQLGALIEQCYSFGDHAHLSDKKIAYLLDQAQQKGL-ILVTTAK 284 (338)
Q Consensus 221 ~~k~v~afs-GIa~P~~F~~~L~~~g~~i~~~~~fpDHh~ys~~dl~~i~~~a~~~~~-~iiTTEK 284 (338)
.+.+.++|| ....-+.+...|.+.|+.+. .=|...+.++-..+.+..++... .||+|.=
T Consensus 257 ~~~k~iVF~~~~~~~~~~~~~l~~~g~~~~-----~~~~~~~~~~R~~~~~~F~~g~~~iLv~T~~ 317 (400)
T 1s2m_A 257 QINQAIIFCNSTNRVELLAKKITDLGYSCY-----YSHARMKQQERNKVFHEFRQGKVRTLVCSDL 317 (400)
T ss_dssp CCSEEEEECSSHHHHHHHHHHHHHHTCCEE-----EECTTSCHHHHHHHHHHHHTTSSSEEEESSC
T ss_pred CCCCEEEEEECCCCHHHHHHHHHHCCCCEE-----EEECCCCHHHHHHHHHHHHCCCCCCEEEEHH
T ss_conf 577279998534411778999986799678-----7424579999999999987699864032003
No 106
>2gks_A Bifunctional SAT/APS kinase; transferase, sulfurylase; HET: ADP; 2.31A {Aquifex aeolicus}
Probab=73.60 E-value=2 Score=22.11 Aligned_cols=11 Identities=18% Similarity=0.196 Sum_probs=4.6
Q ss_pred HHHHHHHHCCC
Q ss_conf 99988740100
Q gi|254780401|r 237 FFTTVRQLGAL 247 (338)
Q Consensus 237 F~~~L~~~g~~ 247 (338)
+...|++.|.+
T Consensus 392 l~~~l~~~~~~ 402 (546)
T 2gks_A 392 LATMLQARGRK 402 (546)
T ss_dssp HHHHHHHTTCC
T ss_pred HHHHHHHCCCE
T ss_conf 99998625964
No 107
>1y1l_A Arsenate reductase (ARSC); detoxification, cadmium, oxidized form, structural genomics, PSI, protein structure initiative; 2.80A {Archaeoglobus fulgidus dsm 4304} SCOP: c.44.1.1
Probab=72.26 E-value=5 Score=19.32 Aligned_cols=32 Identities=22% Similarity=0.234 Sum_probs=22.7
Q ss_pred CEEEECCEEECCCCCCHHHHHHHHHHHHCCCCEEEEEECC
Q ss_conf 8899823000788874899999999852473159876045
Q gi|254780401|r 45 PVICVGGFVMGGTGKTPTALAIAKAVIDKNLKPGFLSRGY 84 (338)
Q Consensus 45 pVI~VGNitvGGtGKTP~v~~l~~~l~~~g~~~~ilsRGY 84 (338)
-.||.|| ++.+||+.++++.+-+ ..-+.|.|-
T Consensus 3 LFvC~~N-----~~RS~mAEal~~~l~~---~~~v~SAG~ 34 (124)
T 1y1l_A 3 LFVCIHN-----TARSVMAEALFNAMAK---SWKAESAGV 34 (124)
T ss_dssp EEEESSC-----SSHHHHHHHHHHTTCS---SCCEEEEES
T ss_pred EEECCCC-----CHHHHHHHHHHHHHCC---CCCEEECCC
T ss_conf 9995998-----5598999999998478---873243365
No 108
>3dqp_A Oxidoreductase YLBE; alpha-beta protein., structural genomics, PSI-2, protein structure initiative; 1.40A {Lactococcus lactis subsp}
Probab=72.10 E-value=3 Score=20.83 Aligned_cols=31 Identities=19% Similarity=0.324 Sum_probs=26.2
Q ss_pred EEECCCCCCHHHHHHHHHHHHCCCCEEEEEECC
Q ss_conf 000788874899999999852473159876045
Q gi|254780401|r 52 FVMGGTGKTPTALAIAKAVIDKNLKPGFLSRGY 84 (338)
Q Consensus 52 itvGGtGKTP~v~~l~~~l~~~g~~~~ilsRGY 84 (338)
+.+||||++ -.+|++.|.++|++|..++|-.
T Consensus 4 lVtGatG~i--G~~lv~~Ll~~g~~V~~~~R~~ 34 (219)
T 3dqp_A 4 FIVGSTGRV--GKSLLKSLSTTDYQIYAGARKV 34 (219)
T ss_dssp EEESTTSHH--HHHHHHHHTTSSCEEEEEESSG
T ss_pred EEECCCCHH--HHHHHHHHHHCCCEEEEEECCH
T ss_conf 999999989--9999999997839899998887
No 109
>3ld9_A DTMP kinase, thymidylate kinase; ssgcid, NIH, niaid, SBRI, UW, emerald biostructures, ALS collaborative crystallography, ATP-binding; 2.15A {Ehrlichia chaffeensis}
Probab=72.06 E-value=2.1 Score=21.91 Aligned_cols=39 Identities=23% Similarity=0.262 Sum_probs=27.2
Q ss_pred CEEEECCEEECCCCCCHHHHHHHHHHHHCC-CCEEEEEECCCC
Q ss_conf 889982300078887489999999985247-315987604578
Q gi|254780401|r 45 PVICVGGFVMGGTGKTPTALAIAKAVIDKN-LKPGFLSRGYGR 86 (338)
Q Consensus 45 pVI~VGNitvGGtGKTP~v~~l~~~l~~~g-~~~~ilsRGYg~ 86 (338)
-|+.-|. -|+|||-.+..|++.|.+.+ ...++.+|.-++
T Consensus 23 fIviEG~---dGsGKTT~~~~L~e~L~~~~~~~~v~~~~ep~~ 62 (223)
T 3ld9_A 23 FITFEGI---DGSGKTTQSHLLAEYLSEIYGVNNVVLTREPGG 62 (223)
T ss_dssp EEEEECS---TTSSHHHHHHHHHHHHHHHHCGGGEEEEESSCS
T ss_pred EEEEECC---CCCCHHHHHHHHHHHHHHHCCCCEEEEECCCCC
T ss_conf 9998899---788699999999999997179972998559999
No 110
>1osn_A Thymidine kinase, VZV-TK; chickenpox, BVDU-MP, transferase; HET: BVP ADP; 3.20A {Human herpesvirus 3} SCOP: c.37.1.1
Probab=72.05 E-value=3.2 Score=20.67 Aligned_cols=33 Identities=18% Similarity=0.214 Sum_probs=26.7
Q ss_pred EEEECCEEECCCCCCHHHHHHHHHHHHCCCCEEEEE
Q ss_conf 899823000788874899999999852473159876
Q gi|254780401|r 46 VICVGGFVMGGTGKTPTALAIAKAVIDKNLKPGFLS 81 (338)
Q Consensus 46 VI~VGNitvGGtGKTP~v~~l~~~l~~~g~~~~ils 81 (338)
|..-||+ |+|||-++..|++.+...|..+.++-
T Consensus 15 I~iEG~~---GsGKTT~~~~L~e~l~~~~~~v~~~~ 47 (341)
T 1osn_A 15 IYLDGAY---GIGKTTAAEEFLHHFAITPNRILLIG 47 (341)
T ss_dssp EEEEESS---SSCTTHHHHHHHHTTTTSGGGEEEEC
T ss_pred EEEECCC---CCCHHHHHHHHHHHHHHCCCCEEEEE
T ss_conf 9998886---78899999999998711698669971
No 111
>2npi_A Protein CLP1; CLP1-PCF11 complex, ATP binding, ternary complex, transcription; HET: ATP; 2.95A {Saccharomyces cerevisiae}
Probab=71.85 E-value=4.3 Score=19.74 Aligned_cols=34 Identities=26% Similarity=0.503 Sum_probs=28.1
Q ss_pred EEEECCEEECCCCCCHHHHHHHHHHHH-CCCCEEEEEE
Q ss_conf 899823000788874899999999852-4731598760
Q gi|254780401|r 46 VICVGGFVMGGTGKTPTALAIAKAVID-KNLKPGFLSR 82 (338)
Q Consensus 46 VI~VGNitvGGtGKTP~v~~l~~~l~~-~g~~~~ilsR 82 (338)
|+.+|. -.+|||-++.+|++++.+ .|++|+++-=
T Consensus 141 VLV~Gp---~~sGKSTl~r~L~Nyalr~~g~~p~~vDl 175 (460)
T 2npi_A 141 VVIVGG---SQTGKTSLSRTLCSYALKFNAYQPLYINL 175 (460)
T ss_dssp EEEEES---TTSSHHHHHHHHHHTTHHHHCCCCEEEEC
T ss_pred EEEECC---CCCCHHHHHHHHHHHHHHCCCCCEEEEEC
T ss_conf 999899---88798999999999998526972399966
No 112
>3h2s_A Putative NADH-flavin reductase; Q03B84, NESG, LCR19, structural genomics, PSI-2, protein structure initiative; HET: NDP; 1.78A {Lactobacillus casei atcc 334}
Probab=71.85 E-value=2.7 Score=21.22 Aligned_cols=30 Identities=23% Similarity=0.277 Sum_probs=25.8
Q ss_pred EEECCCCCCHHHHHHHHHHHHCCCCEEEEEEC
Q ss_conf 00078887489999999985247315987604
Q gi|254780401|r 52 FVMGGTGKTPTALAIAKAVIDKNLKPGFLSRG 83 (338)
Q Consensus 52 itvGGtGKTP~v~~l~~~l~~~g~~~~ilsRG 83 (338)
+.+||||.. -.+|++.|.++|++|..++|.
T Consensus 4 lV~GatG~i--G~~lv~~L~~~G~~V~~~~R~ 33 (224)
T 3h2s_A 4 AVLGATGRA--GSAIVAEARRRGHEVLAVVRD 33 (224)
T ss_dssp EEETTTSHH--HHHHHHHHHHTTCEEEEEESC
T ss_pred EEECCCCHH--HHHHHHHHHHCCCEEEEEECC
T ss_conf 999989589--999999999787989999888
No 113
>2oap_1 GSPE-2, type II secretion system protein; hexameric ATPase, hydrolase; HET: ANP; 2.95A {Archaeoglobus fulgidus dsm 4304} PDB: 2oaq_1
Probab=71.37 E-value=5.2 Score=19.18 Aligned_cols=25 Identities=28% Similarity=0.170 Sum_probs=12.0
Q ss_pred CCCCCCHHHHHHHHHHHHCCCCEEEE
Q ss_conf 78887489999999985247315987
Q gi|254780401|r 55 GGTGKTPTALAIAKAVIDKNLKPGFL 80 (338)
Q Consensus 55 GGtGKTP~v~~l~~~l~~~g~~~~il 80 (338)
.|||||-+.-+|+..+. .+.++..+
T Consensus 269 tgSGKTT~L~all~~i~-~~~riitI 293 (511)
T 2oap_1 269 TASGKTTTLNAIMMFIP-PDAKVVSI 293 (511)
T ss_dssp TTSSHHHHHHHHGGGSC-TTCCEEEE
T ss_pred CCCCHHHHHHHHHHHHH-HCCCEEEE
T ss_conf 98988999999999645-40541454
No 114
>1j6u_A UDP-N-acetylmuramate-alanine ligase MURC; structural genomics, TM0231, JCSG, PSI, protein structure initiative; 2.30A {Thermotoga maritima} SCOP: c.5.1.1 c.59.1.1 c.72.2.1
Probab=71.02 E-value=4.5 Score=19.64 Aligned_cols=40 Identities=23% Similarity=0.244 Sum_probs=31.8
Q ss_pred CCEEEECCEEECCCCCCHHHHHHHHHHHHCCCCEEEEEECCCCC
Q ss_conf 98899823000788874899999999852473159876045787
Q gi|254780401|r 44 IPVICVGGFVMGGTGKTPTALAIAKAVIDKNLKPGFLSRGYGRK 87 (338)
Q Consensus 44 ~pVI~VGNitvGGtGKTP~v~~l~~~l~~~g~~~~ilsRGYg~~ 87 (338)
.++|. .+|-.|||-++.+++..|+..|.++....-+....
T Consensus 114 ~~~Ia----ITGTnGKTTTt~ml~~iL~~~g~~~~~~~~~~~~~ 153 (469)
T 1j6u_A 114 KEEFA----VTGTDGKTTTTAMVAHVLKHLRKSPTVFLGGIMDS 153 (469)
T ss_dssp CCEEE----EECSSSHHHHHHHHHHHHHHTTCCCEEECSSCCTT
T ss_pred CCEEE----EECCCCHHHHHHHHHHHHCCCCCCCEEECCCCCCC
T ss_conf 76799----96899614699999998605454541203765564
No 115
>3bh0_A DNAB-like replicative helicase; ATPase, replication; 2.35A {Bacillus phage SPP1}
Probab=70.96 E-value=2.7 Score=21.16 Aligned_cols=32 Identities=34% Similarity=0.348 Sum_probs=26.8
Q ss_pred CCEEE----CCCCCCHHHHHHHHHHHHCCCCEEEEE
Q ss_conf 23000----788874899999999852473159876
Q gi|254780401|r 50 GGFVM----GGTGKTPTALAIAKAVIDKNLKPGFLS 81 (338)
Q Consensus 50 GNitv----GGtGKTP~v~~l~~~l~~~g~~~~ils 81 (338)
|++++ =|.|||-++..++......|.+|.++|
T Consensus 68 G~l~vi~g~pg~GKT~~~l~l~~~~~~~g~~vl~~S 103 (315)
T 3bh0_A 68 RNFVLIAARPSMGKTAFALKQAKNMSDNDDVVNLHS 103 (315)
T ss_dssp TCEEEEECCTTSSHHHHHHHHHHHHHTTTCEEEEEE
T ss_pred CCEEEEEECCCCCHHHHHHHHHHHHHCCCCEEEEEE
T ss_conf 808999957999999999999998741698299984
No 116
>1gg4_A UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6- diaminopimelate-D-alanyl-D-alanyl ligase...; alpha/beta sheet; 2.30A {Escherichia coli} SCOP: c.98.1.1 c.59.1.1 c.72.2.1
Probab=70.84 E-value=3.1 Score=20.81 Aligned_cols=40 Identities=18% Similarity=0.160 Sum_probs=30.1
Q ss_pred CCCCCEEEECCEEECCCCCCHHHHHHHHHHHHCCCCEEEEEECCC
Q ss_conf 388988998230007888748999999998524731598760457
Q gi|254780401|r 41 HAPIPVICVGGFVMGGTGKTPTALAIAKAVIDKNLKPGFLSRGYG 85 (338)
Q Consensus 41 ~~~~pVI~VGNitvGGtGKTP~v~~l~~~l~~~g~~~~ilsRGYg 85 (338)
..+.+||.| +|-.|||-++.+++..|...|...+.. ..++
T Consensus 97 ~~~~~vi~I----TGT~GKTTt~~~l~~il~~~g~~~~~~-~~~~ 136 (452)
T 1gg4_A 97 QVPARVVAL----TGSSGKTSVKEMTAAILSQCGNTLYTA-GNLN 136 (452)
T ss_dssp HSCCEEEEE----ECSSCHHHHHHHHHHHHTTTSCEEECC-TTCC
T ss_pred CCCCCEEEE----EECCCCHHHHHHHHHHHHHHHCCCCCC-CCCC
T ss_conf 799246999----713674044567887777652143023-5778
No 117
>1m8p_A Sulfate adenylyltransferase; rossmann fold, phosphosulfate binding, T-state; HET: PPS; 2.60A {Penicillium chrysogenum} SCOP: b.122.1.3 c.26.1.5 c.37.1.15 PDB: 1i2d_A*
Probab=70.45 E-value=2.2 Score=21.82 Aligned_cols=15 Identities=7% Similarity=0.308 Sum_probs=6.0
Q ss_pred HHHHHHHHHHHHHHH
Q ss_conf 999999999999863
Q gi|254780401|r 317 DLTNLVEMTVVSFAN 331 (338)
Q Consensus 317 ~l~~~l~~~i~~~~n 331 (338)
.....+++.+..+.+
T Consensus 552 ~~~~~~~~I~~~L~~ 566 (573)
T 1m8p_A 552 SVRSIVHEIILVLES 566 (573)
T ss_dssp CHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHH
T ss_conf 999999999999997
No 118
>1w36_D RECD, exodeoxyribonuclease V alpha chain; recombination, helicase, hydrolase, DNA repair; HET: DNA; 3.1A {Escherichia coli} SCOP: c.37.1.19 c.37.1.19 PDB: 3k70_D*
Probab=70.12 E-value=2.7 Score=21.20 Aligned_cols=27 Identities=30% Similarity=0.367 Sum_probs=19.9
Q ss_pred CCCCCCHHHHHHHHHHHHC----CCCEEEEE
Q ss_conf 7888748999999998524----73159876
Q gi|254780401|r 55 GGTGKTPTALAIAKAVIDK----NLKPGFLS 81 (338)
Q Consensus 55 GGtGKTP~v~~l~~~l~~~----g~~~~ils 81 (338)
.|||||-++..++..+.+. +.++.+++
T Consensus 173 pGTGKTtti~~~i~~l~~~~~~~~~~Ill~A 203 (608)
T 1w36_D 173 PGTGKTTTVAKLLAALIQMADGERCRIRLAA 203 (608)
T ss_dssp TTSTHHHHHHHHHHHHHHTCSSCCCCEEEEB
T ss_pred CCCHHHHHHHHHHHHHHHHHHCCCCEEEEEE
T ss_conf 9972999999999999997415798499994
No 119
>3h4t_A Glycosyltransferase GTFA, glycosyltransferase; vancomycin, teicoplanin, ORF1, natural products, antibiotic; HET: UDP; 1.15A {Amycolatopsis orientalis} PDB: 3h4i_A* 1pn3_A* 1pnv_A*
Probab=70.10 E-value=2.3 Score=21.72 Aligned_cols=32 Identities=13% Similarity=0.078 Sum_probs=25.4
Q ss_pred EEECCCC--CCHHHHHHHHHHHHCCCCEEEEEECC
Q ss_conf 0007888--74899999999852473159876045
Q gi|254780401|r 52 FVMGGTG--KTPTALAIAKAVIDKNLKPGFLSRGY 84 (338)
Q Consensus 52 itvGGtG--KTP~v~~l~~~l~~~g~~~~ilsRGY 84 (338)
++.|||| =.|++ .||+.|.++|+.|.+++-+.
T Consensus 5 ~~~~Gt~G~v~P~l-alA~~L~~rGh~V~~~t~~~ 38 (404)
T 3h4t_A 5 ITGCGSRGDTEPLV-ALAARLRELGADARMCLPPD 38 (404)
T ss_dssp EEEESSHHHHHHHH-HHHHHHHHTTCCEEEEECGG
T ss_pred EECCCCHHHHHHHH-HHHHHHHHCCCEEEEEECCH
T ss_conf 99176824899999-99999998799799997801
No 120
>2r6j_A Eugenol synthase 1; phenylpropene, PIP reductase, short-chain dehydrogenase/reductase, plant protein; HET: NDP; 1.50A {Ocimum basilicum} PDB: 2qys_A 2qx7_A* 2qzz_A* 2r2g_A* 3c3x_A* 2qw8_A*
Probab=70.00 E-value=3.3 Score=20.60 Aligned_cols=30 Identities=20% Similarity=0.337 Sum_probs=25.0
Q ss_pred EEECCCCCCHHHHHHHHHHHHCCCCEEEEEEC
Q ss_conf 00078887489999999985247315987604
Q gi|254780401|r 52 FVMGGTGKTPTALAIAKAVIDKNLKPGFLSRG 83 (338)
Q Consensus 52 itvGGtGKTP~v~~l~~~l~~~g~~~~ilsRG 83 (338)
+.+||||- +=..|++.|.++|++|.+++|.
T Consensus 15 lVtGatG~--iG~~l~~~Ll~~g~~V~~l~R~ 44 (318)
T 2r6j_A 15 LIFGGTGY--IGNHMVKGSLKLGHPTYVFTRP 44 (318)
T ss_dssp EEETTTST--THHHHHHHHHHTTCCEEEEECT
T ss_pred EEECCCCH--HHHHHHHHHHHCCCEEEEEECC
T ss_conf 99899968--9999999999786979999789
No 121
>3ew7_A LMO0794 protein; Q8Y8U8_lismo, putative NAD-dependent epimerase/dehydratase, LMR162, NESG, structural genomics, PSI-2; 2.73A {Listeria monocytogenes}
Probab=69.98 E-value=4.6 Score=19.53 Aligned_cols=30 Identities=17% Similarity=0.290 Sum_probs=24.7
Q ss_pred EEECCCCCCHHHHHHHHHHHHCCCCEEEEEEC
Q ss_conf 00078887489999999985247315987604
Q gi|254780401|r 52 FVMGGTGKTPTALAIAKAVIDKNLKPGFLSRG 83 (338)
Q Consensus 52 itvGGtGKTP~v~~l~~~l~~~g~~~~ilsRG 83 (338)
+.+||||.. =.+|++.|.++|++|..++|.
T Consensus 4 lV~GatG~i--G~~l~~~L~~~G~~V~~~~R~ 33 (221)
T 3ew7_A 4 GIIGATGRA--GSRILEEAKNRGHEVTAIVRN 33 (221)
T ss_dssp EEETTTSHH--HHHHHHHHHHTTCEEEEEESC
T ss_pred EEECCCCHH--HHHHHHHHHHCCCEEEEEECC
T ss_conf 999988189--999999999786989999888
No 122
>2is6_A DNA helicase II; hydrolase/DNA complex; HET: DNA ADP; 2.20A {Escherichia coli} PDB: 2is2_A* 2is1_A* 2is4_A*
Probab=69.07 E-value=4 Score=19.96 Aligned_cols=34 Identities=18% Similarity=0.228 Sum_probs=20.5
Q ss_pred CCEEEECCEEEC-CCCCCHHHHHHHHHHH-HCC---CCEEEEE
Q ss_conf 988998230007-8887489999999985-247---3159876
Q gi|254780401|r 44 IPVICVGGFVMG-GTGKTPTALAIAKAVI-DKN---LKPGFLS 81 (338)
Q Consensus 44 ~pVI~VGNitvG-GtGKTP~v~~l~~~l~-~~g---~~~~ils 81 (338)
-|+..+ +| |||||-+...-+.+|. ..| -++.+||
T Consensus 23 ~~~lV~----AgAGSGKT~tL~~ri~~Li~~~~~~p~~Il~lT 61 (680)
T 2is6_A 23 SNLLVL----AGAGSGKTRVLVHRIAWLMSVENCSPYSIMAVT 61 (680)
T ss_dssp SCEEEE----CCTTSSHHHHHHHHHHHHHHTSCCCGGGEEEEE
T ss_pred CCEEEE----EECCHHHHHHHHHHHHHHHHHCCCCHHHEEEEC
T ss_conf 998999----848648999999999999980999950398880
No 123
>1qyc_A Phenylcoumaran benzylic ether reductase PT1; NADPH-dependent aromatic alcohol reductases, pcber, PLR, IFR, lignans, isoflavonoids, plant protein; 2.20A {Pinus taeda} SCOP: c.2.1.2
Probab=68.43 E-value=4.7 Score=19.51 Aligned_cols=31 Identities=29% Similarity=0.352 Sum_probs=25.5
Q ss_pred EEECCCCCCHHHHHHHHHHHHCCCCEEEEEECC
Q ss_conf 000788874899999999852473159876045
Q gi|254780401|r 52 FVMGGTGKTPTALAIAKAVIDKNLKPGFLSRGY 84 (338)
Q Consensus 52 itvGGtGKTP~v~~l~~~l~~~g~~~~ilsRGY 84 (338)
+.+||||.. -..|++.|.+.|+++-+++|.-
T Consensus 8 LVtGatG~i--G~~lv~~Ll~~g~~V~~l~R~~ 38 (308)
T 1qyc_A 8 LLIGATGYI--GRHVAKASLDLGHPTFLLVRES 38 (308)
T ss_dssp EEESTTSTT--HHHHHHHHHHTTCCEEEECCCC
T ss_pred EEECCCCHH--HHHHHHHHHHCCCEEEEEECCC
T ss_conf 998988389--9999999997889699998888
No 124
>3lk7_A UDP-N-acetylmuramoylalanine--D-glutamate ligase; agalacitae, PSI, MCSG, structural genomics, midwest center for structural genomics; HET: MSE; 1.50A {Streptococcus agalactiae}
Probab=68.40 E-value=5.6 Score=18.92 Aligned_cols=36 Identities=22% Similarity=0.253 Sum_probs=29.7
Q ss_pred CCCEEEECCEEECCCCCCHHHHHHHHHHHHCCCCEEEEEE
Q ss_conf 8988998230007888748999999998524731598760
Q gi|254780401|r 43 PIPVICVGGFVMGGTGKTPTALAIAKAVIDKNLKPGFLSR 82 (338)
Q Consensus 43 ~~pVI~VGNitvGGtGKTP~v~~l~~~l~~~g~~~~ilsR 82 (338)
+.|||.| +|=.|||-++.+|+..|+..|.++.+..-
T Consensus 111 ~~~vIgV----TGT~GKTTt~~~l~~iL~~~~~~~~~~~~ 146 (451)
T 3lk7_A 111 ESQLIGI----TGSNGKTTTTTMIAEVLNAGGQRGLLAGN 146 (451)
T ss_dssp CSEEEEE----ECSSCHHHHHHHHHHHHHHTTCCEEEEET
T ss_pred HCCEEEE----ECCCCCCHHHHHHHHHHHHCCCCCEECCC
T ss_conf 0868999----77778621899999998643344123046
No 125
>2f00_A UDP-N-acetylmuramate--L-alanine ligase; amide bond ligase, ATPase, bacterial cell WALL; 2.50A {Escherichia coli}
Probab=68.20 E-value=4.7 Score=19.49 Aligned_cols=38 Identities=26% Similarity=0.451 Sum_probs=30.1
Q ss_pred CEEEECCEEECCCCCCHHHHHHHHHHHHCCCCEEEEEECCCC
Q ss_conf 889982300078887489999999985247315987604578
Q gi|254780401|r 45 PVICVGGFVMGGTGKTPTALAIAKAVIDKNLKPGFLSRGYGR 86 (338)
Q Consensus 45 pVI~VGNitvGGtGKTP~v~~l~~~l~~~g~~~~ilsRGYg~ 86 (338)
+||+ ++|-.|||-++.+++..|++.|++++.+.=|.+.
T Consensus 120 ~~ia----VTGTnGKTTtt~ml~~iL~~~g~~~~~~~g~~~~ 157 (491)
T 2f00_A 120 HGIA----IAGTHGKTTTTAMVSSIYAEAGLDPTFVNGGLVK 157 (491)
T ss_dssp EEEE----EESSSCHHHHHHHHHHHHHHTTCCCEEEEEEEET
T ss_pred EEEE----EECCCCCCHHHHHHHHHHHHCCCCCEEEECCCCC
T ss_conf 2799----9456782329999999999759993799716445
No 126
>3ice_A Transcription termination factor RHO; transcription, ATPase, hexamer, helicase, RNA, RECA, OB fold, motor, ATP-binding, hydrolase; HET: MSE ADP SPD; 2.80A {Escherichia coli k-12} PDB: 1pv4_A 1pvo_A* 1xpo_A* 1xpr_A* 1xpu_A* 2ht1_A
Probab=67.77 E-value=3.9 Score=20.07 Aligned_cols=114 Identities=19% Similarity=0.069 Sum_probs=51.7
Q ss_pred CCCCCCHHHHHHHHHHHHCCCC--EEEEEECCC--------CCCCCCEEEECCCCCHHHHCCHHHHHHHCCCCCCCCCHH
Q ss_conf 7888748999999998524731--598760457--------877775587145678877042123322057634652012
Q gi|254780401|r 55 GGTGKTPTALAIAKAVIDKNLK--PGFLSRGYG--------RKSRISFRVDLEKHSAYDVGDEPLLLARRAVTIVTSDRK 124 (338)
Q Consensus 55 GGtGKTP~v~~l~~~l~~~g~~--~~ilsRGYg--------~~~~~~~~v~~~~~~~~~vGDEp~lla~~~pv~V~~~R~ 124 (338)
=|||||-+..-+++.....+-. ++++.-|=. +..++ ..+.+. -|||....-.++-.+ .
T Consensus 183 ~gtGKT~Ll~~ia~~~~~~~~~~v~~v~li~er~eev~e~~~~~~~-~vV~st-------~d~~~~~~~~~a~~a----~ 250 (422)
T 3ice_A 183 PKAGKTMLLQNIAQSIAYNHPDCVLMVLLIDERPEEVTEMQRLVKG-EVVAST-------FDEPASRHVQVAEMV----I 250 (422)
T ss_dssp SSSSHHHHHHHHHHHHHHHCTTSEEEEEEESSCHHHHHHHHTTCSS-EEEEEC-------TTSCHHHHHHHHHHH----H
T ss_pred CCCCCCHHHHHHHHHHHCCCCCEEEEEEEEEEEHHHHHHHHHHCCC-EEEEEC-------CCCCHHHHHHHHHHH----H
T ss_conf 9987018999999754406998799999984176887765542051-799966-------889746632598899----9
Q ss_pred HHHHHHCCCCCCE-EEECCCCCCCCCCCEEEEEEECCCCCCCCCCCCCCHHHHHCCHHHHHHH
Q ss_conf 2566410245747-9971832234412306999961843356655376136521002556651
Q gi|254780401|r 125 IGVQMLLQEGVDI-IIMDDGFHSADLQADFSLIVVNSHRGLGNGLVFPAGPLRVPLSRQLSYV 186 (338)
Q Consensus 125 ~~~~~~~~~~~di-iIlDDGfQh~~l~rdl~Ivl~d~~~~~gn~~llPaGpLREp~~~~l~ra 186 (338)
..|++....+-|| +++||=..|-+-.|.+...+ .++.+ .-.|++-+-.+ ++-..||
T Consensus 251 ~~Ae~~~d~G~dVlll~DslTR~A~A~reis~~~---G~~ps--~g~~~~~~~~~-~~~~era 307 (422)
T 3ice_A 251 EKAKRLVEHKKDVIILLDSITRLARAYNTVVPAS---GKVLT--GGVDANALHRP-KRFFGAA 307 (422)
T ss_dssp HHHHHHHHTSCEEEEEEECHHHHHHHHHHHSCCS---SCBCS--SSCBHHHHHHH-HHHHTTC
T ss_pred HHHHHHHHCCCCCCEEECCHHHHHHHHHHHHHHC---CCCCC--CCCCCCCCCCH-HHHHHHH
T ss_conf 9999999759974146265899999998777534---89887--88784212037-9999753
No 127
>3kbq_A Protein TA0487; structural genomics, CINA, protein structure initiative, MCSG, PSI-2, midwest center for structural genomics; 2.00A {Thermoplasma acidophilum}
Probab=67.68 E-value=6.2 Score=18.62 Aligned_cols=38 Identities=18% Similarity=0.125 Sum_probs=29.3
Q ss_pred CCCEEEECCEEECCCCCCHHHHHHHHHHHHCCCCEEEE
Q ss_conf 89889982300078887489999999985247315987
Q gi|254780401|r 43 PIPVICVGGFVMGGTGKTPTALAIAKAVIDKNLKPGFL 80 (338)
Q Consensus 43 ~~pVI~VGNitvGGtGKTP~v~~l~~~l~~~g~~~~il 80 (338)
.+-||++||=.+-|.=..--..||++.|.+.|+.+.-.
T Consensus 5 na~Ii~~GdEll~G~i~dtN~~~l~~~L~~~G~~v~~~ 42 (172)
T 3kbq_A 5 NASVITVGNEILKGRTVNTNAAFIGNFLTYHGYQVRRG 42 (172)
T ss_dssp EEEEEEECHHHHTTSSCCHHHHHHHHHHHHTTCEEEEE
T ss_pred CEEEEEECCCCCCCEEEEHHHHHHHHHHHHCCCCEEEE
T ss_conf 68999975115177046619999999999879917799
No 128
>2f1r_A Molybdopterin-guanine dinucleotide biosynthesis protein B (MOBB); structural genomics, PSI, protein structure initiative; 2.10A {Archaeoglobus fulgidus}
Probab=67.66 E-value=1.4 Score=23.12 Aligned_cols=31 Identities=16% Similarity=0.259 Sum_probs=26.7
Q ss_pred ECCCCCCHHHHHHHHHHHHCCCCEEEEEECC
Q ss_conf 0788874899999999852473159876045
Q gi|254780401|r 54 MGGTGKTPTALAIAKAVIDKNLKPGFLSRGY 84 (338)
Q Consensus 54 vGGtGKTP~v~~l~~~l~~~g~~~~ilsRGY 84 (338)
--|+|||-+.-.|+..|+..|.++.+.-+-.
T Consensus 10 ~nGsGKTTLl~~l~g~l~~~~g~V~~~g~~~ 40 (171)
T 2f1r_A 10 TSDSGKTTLITRMMPILRERGLRVAVVKRHA 40 (171)
T ss_dssp SCHHHHHHHHHHHHHHHHHTTCCEEEEEC--
T ss_pred CCCCCHHHHHHHHHHHHCCCCCEEEEEEECC
T ss_conf 9998899999999710277997799941125
No 129
>3m2p_A UDP-N-acetylglucosamine 4-epimerase; SGXNY, 11155J, isomerase, structural genomics, PSI-2, protein structure initiative; HET: UDP; 2.95A {Bacillus cereus}
Probab=67.60 E-value=6.2 Score=18.61 Aligned_cols=43 Identities=23% Similarity=0.369 Sum_probs=32.3
Q ss_pred EEECCCCCCHHHHHHHHHHHHCCCCEEEEEECCCCCCCCCEEEEC
Q ss_conf 000788874899999999852473159876045787777558714
Q gi|254780401|r 52 FVMGGTGKTPTALAIAKAVIDKNLKPGFLSRGYGRKSRISFRVDL 96 (338)
Q Consensus 52 itvGGtGKTP~v~~l~~~l~~~g~~~~ilsRGYg~~~~~~~~v~~ 96 (338)
|.+|||| =+=.+|++.|.++|+.+.+++|.-.++.-....++.
T Consensus 6 LItGatG--fIG~~l~~~L~~~g~~v~~~~r~~~~~~~~~~~~~~ 48 (311)
T 3m2p_A 6 AVTGGTG--FLGQYVVESIKNDGNTPIILTRSIGNKAINDYEYRV 48 (311)
T ss_dssp EEETTTS--HHHHHHHHHHHHTTCEEEEEESCCC-----CCEEEE
T ss_pred EEECCCC--HHHHHHHHHHHHCCCEEEEEECCCCCCCCCCCEEEE
T ss_conf 9989997--899999999997869899996898865556632797
No 130
>1tf7_A KAIC; homohexamer, hexamer, circadian clock protein; HET: ATP; 2.80A {Synechococcus SP} SCOP: c.37.1.11 c.37.1.11 PDB: 1u9i_A* 2gbl_A* 3dvl_A* 3k0a_A* 3k09_A* 3jzm_A* 3k0e_A* 3k0c_A* 3k0f_A*
Probab=67.55 E-value=3.6 Score=20.31 Aligned_cols=27 Identities=26% Similarity=0.394 Sum_probs=20.5
Q ss_pred CCCCCCHHHHHH-HHHHHHCCCCEEEEE
Q ss_conf 788874899999-999852473159876
Q gi|254780401|r 55 GGTGKTPTALAI-AKAVIDKNLKPGFLS 81 (338)
Q Consensus 55 GGtGKTP~v~~l-~~~l~~~g~~~~ils 81 (338)
-|||||-++.-+ ++.+.+.|.++..+|
T Consensus 48 pGsGKT~la~q~l~~~~~~~ge~vlyis 75 (525)
T 1tf7_A 48 SGTGKTLFSIQFLYNGIIEFDEPGVFVT 75 (525)
T ss_dssp TTSSHHHHHHHHHHHHHHHHCCCEEEEE
T ss_pred CCCCHHHHHHHHHHHHHHHCCCEEEEEE
T ss_conf 9988999999999999986798599997
No 131
>2q6t_A DNAB replication FORK helicase; hydrolase; 2.90A {Thermus aquaticus}
Probab=67.19 E-value=4.8 Score=19.42 Aligned_cols=27 Identities=33% Similarity=0.458 Sum_probs=22.7
Q ss_pred CCCCCCHHHHHHHHH-HHHCCCCEEEEE
Q ss_conf 788874899999999-852473159876
Q gi|254780401|r 55 GGTGKTPTALAIAKA-VIDKNLKPGFLS 81 (338)
Q Consensus 55 GGtGKTP~v~~l~~~-l~~~g~~~~ils 81 (338)
-|.|||-+++.++.. ..++|++|+++|
T Consensus 209 pg~GKT~~~~~~a~~~a~~~g~~v~~~s 236 (444)
T 2q6t_A 209 PAMGKTAFALTIAQNAALKEGVGVGIYS 236 (444)
T ss_dssp TTSCHHHHHHHHHHHHHHTTCCCEEEEE
T ss_pred CCCCCHHHHHHHHHHHHHHCCCEEEEEC
T ss_conf 4666218888789999997799499985
No 132
>3cr8_A Sulfate adenylyltranferase, adenylylsulfate kinase; APS kinase, transferase, sulfate metabolism, nucleotide 2 kinase; 2.95A {Thiobacillus denitrificans}
Probab=67.12 E-value=2 Score=22.16 Aligned_cols=20 Identities=20% Similarity=0.114 Sum_probs=9.5
Q ss_pred EEEEEECCCCHHHHHHHHHH
Q ss_conf 38987415535789998874
Q gi|254780401|r 224 KVLAFSGIADTEKFFTTVRQ 243 (338)
Q Consensus 224 ~v~afsGIa~P~~F~~~L~~ 243 (338)
.++.+|.|+-.+...+..++
T Consensus 443 ~~VIvs~isp~~~~R~~~r~ 462 (552)
T 3cr8_A 443 GIAICAPIAPYRQTRRDVRA 462 (552)
T ss_dssp CEEEECCCCCCHHHHHHHHH
T ss_pred CEEEEEECCCCHHHHHHHHH
T ss_conf 98999978879999999999
No 133
>3ec2_A DNA replication protein DNAC; helicase loader, replication initiation factor, ATP-binding, nucleotide-binding; HET: DNA ADP; 2.70A {Aquifex aeolicus} PDB: 3ecc_A*
Probab=66.87 E-value=2.6 Score=21.26 Aligned_cols=34 Identities=35% Similarity=0.470 Sum_probs=24.6
Q ss_pred CCEEEECCEEECCCCCCHHHHHHHHHHHH-CCCCEEEE
Q ss_conf 98899823000788874899999999852-47315987
Q gi|254780401|r 44 IPVICVGGFVMGGTGKTPTALAIAKAVID-KNLKPGFL 80 (338)
Q Consensus 44 ~pVI~VGNitvGGtGKTP~v~~l~~~l~~-~g~~~~il 80 (338)
-.++-.|+- |||||-+...+++.+.. .|+++..+
T Consensus 39 ~~l~l~G~~---GtGKT~La~ai~~~l~~~~~~~~~~i 73 (180)
T 3ec2_A 39 KGLTFVGSP---GVGKTHLAVATLKAIYEKKGIRGYFF 73 (180)
T ss_dssp CEEEECCSS---SSSHHHHHHHHHHHHHHHSCCCCCEE
T ss_pred CEEEEECCC---CCCHHHHHHHHHHHHHHHCCCEEEEE
T ss_conf 769999999---99889999999999886059636775
No 134
>1kjn_A MTH0777; hypotethical protein, structural genomics, PSI, protein structure initiative; 2.20A {Methanothermobacterthermautotrophicus} SCOP: c.115.1.1
Probab=66.76 E-value=3.7 Score=20.23 Aligned_cols=23 Identities=13% Similarity=0.239 Sum_probs=21.3
Q ss_pred CCHHHHHHHHHHHHCCCCEEEEE
Q ss_conf 74899999999852473159876
Q gi|254780401|r 59 KTPTALAIAKAVIDKNLKPGFLS 81 (338)
Q Consensus 59 KTP~v~~l~~~l~~~g~~~~ils 81 (338)
.||.++||+..|+++|+.|.|.+
T Consensus 21 q~p~~lYl~~~Lk~~G~~v~Va~ 43 (157)
T 1kjn_A 21 QIPLAIYTSHKLKKKGFRVTVTA 43 (157)
T ss_dssp HHHHHHHHHHHHHHTTCEEEEEE
T ss_pred HHHHHHHHHHHHHHCCCCEEEEC
T ss_conf 33799999999976697459965
No 135
>2p5y_A UDP-glucose 4-epimerase; TTHA0591, structural genomics, PSI; HET: NAD; 1.92A {Thermus thermophilus HB8} PDB: 2p5u_A*
Probab=66.27 E-value=5.5 Score=19.00 Aligned_cols=29 Identities=24% Similarity=0.456 Sum_probs=24.6
Q ss_pred EEECCCCCCHHHHHHHHHHHHCCCCEEEEEE
Q ss_conf 0007888748999999998524731598760
Q gi|254780401|r 52 FVMGGTGKTPTALAIAKAVIDKNLKPGFLSR 82 (338)
Q Consensus 52 itvGGtGKTP~v~~l~~~l~~~g~~~~ilsR 82 (338)
+.+|||| -+-.+|++.|.++|++|.+++|
T Consensus 4 lITGatG--fIG~~lv~~L~~~g~~V~~~d~ 32 (311)
T 2p5y_A 4 LVTGGAG--FIGSHIVEDLLARGLEVAVLDN 32 (311)
T ss_dssp EEETTTS--HHHHHHHHHHHTTTCEEEEECC
T ss_pred EEECCCC--HHHHHHHHHHHHCCCEEEEEEC
T ss_conf 9988888--7999999999978698999978
No 136
>1jay_A Coenzyme F420H2:NADP+ oxidoreductase (FNO); rossman fold, structural genomics; HET: NAP F42; 1.65A {Archaeoglobus fulgidus} SCOP: c.2.1.6 PDB: 1jax_A*
Probab=65.98 E-value=5.9 Score=18.78 Aligned_cols=29 Identities=24% Similarity=0.236 Sum_probs=25.4
Q ss_pred EECCCCCCHHHHHHHHHHHHCCCCEEEEEEC
Q ss_conf 0078887489999999985247315987604
Q gi|254780401|r 53 VMGGTGKTPTALAIAKAVIDKNLKPGFLSRG 83 (338)
Q Consensus 53 tvGGtGKTP~v~~l~~~l~~~g~~~~ilsRG 83 (338)
.+||+| -+=..||+.|.+.|++|.+.+|.
T Consensus 5 iigGaG--~iG~alA~~la~~G~~V~l~~R~ 33 (212)
T 1jay_A 5 LLGGTG--NLGKGLALRLATLGHEIVVGSRR 33 (212)
T ss_dssp EETTTS--HHHHHHHHHHHTTTCEEEEEESS
T ss_pred EEECCH--HHHHHHHHHHHHCCCEEEEEECC
T ss_conf 994845--99999999999889989999699
No 137
>2kjq_A DNAA-related protein; solution structure, NESG, structural genomics, PSI-2, protei structure initiative; NMR {Neisseria meningitidis serogroup B}
Probab=65.88 E-value=5.5 Score=18.98 Aligned_cols=27 Identities=15% Similarity=0.324 Sum_probs=22.6
Q ss_pred CCCCCCHHHHHHHHHHHHCCCCEEEEE
Q ss_conf 788874899999999852473159876
Q gi|254780401|r 55 GGTGKTPTALAIAKAVIDKNLKPGFLS 81 (338)
Q Consensus 55 GGtGKTP~v~~l~~~l~~~g~~~~ils 81 (338)
.|+|||=+..++++.+..++..+..++
T Consensus 45 ~GsGKTHLl~a~~~~~~~~~~~~~~~~ 71 (149)
T 2kjq_A 45 EGAGKSHLLQAWVAQALEAGKNAAYID 71 (149)
T ss_dssp STTTTCHHHHHHHHHHHTTTCCEEEEE
T ss_pred CCCCHHHHHHHHHHHHHHCCCCEEEEE
T ss_conf 999889999999999980899189973
No 138
>1xgk_A Nitrogen metabolite repression regulator NMRA; rossmann fold, transcriptional regulation, short chain dehydrogenase, reductase, NADP binding; 1.40A {Emericella nidulans} SCOP: c.2.1.2 PDB: 1k6x_A* 1k6j_A 1k6i_A* 1ti7_A* 2vus_A 2vut_A* 2vuu_A*
Probab=65.78 E-value=6.5 Score=18.48 Aligned_cols=30 Identities=13% Similarity=0.185 Sum_probs=24.5
Q ss_pred EEECCCCCCHHHHHHHHHHHHCCCCEEEEEEC
Q ss_conf 00078887489999999985247315987604
Q gi|254780401|r 52 FVMGGTGKTPTALAIAKAVIDKNLKPGFLSRG 83 (338)
Q Consensus 52 itvGGtGKTP~v~~l~~~l~~~g~~~~ilsRG 83 (338)
+++||||.. =..+++.|.++|++|.+++|-
T Consensus 9 lVtGaTG~i--G~~lv~~Ll~~G~~V~~l~R~ 38 (352)
T 1xgk_A 9 AVVGATGRQ--GASLIRVAAAVGHHVRAQVHS 38 (352)
T ss_dssp EEESTTSHH--HHHHHHHHHHTTCCEEEEESC
T ss_pred EEECCCCHH--HHHHHHHHHHCCCEEEEEECC
T ss_conf 998997189--999999999589959999778
No 139
>3foz_A TRNA delta(2)-isopentenylpyrophosphate transferase; nucleoside modification, isopentenyl-tRNA transferase, MIAA, transferase/RNA complex; 2.50A {Escherichia coli k-12} PDB: 2zxu_A* 2zm5_A
Probab=65.64 E-value=5.3 Score=19.11 Aligned_cols=33 Identities=30% Similarity=0.457 Sum_probs=23.0
Q ss_pred CCCC-EEEECCEEECCCCCCHHHHHHHHHHHHCCCCEEEEE
Q ss_conf 8898-899823000788874899999999852473159876
Q gi|254780401|r 42 APIP-VICVGGFVMGGTGKTPTALAIAKAVIDKNLKPGFLS 81 (338)
Q Consensus 42 ~~~p-VI~VGNitvGGtGKTP~v~~l~~~l~~~g~~~~ils 81 (338)
...| ||+|.-- -|||||-+++.||+.+ +-.|||
T Consensus 7 ~~~p~vi~I~Gp--TasGKs~La~~lA~~~-----~~eIIs 40 (316)
T 3foz_A 7 ASLPKAIFLMGP--TASGKTALAIELRKIL-----PVELIS 40 (316)
T ss_dssp CCCCEEEEEECC--TTSCHHHHHHHHHHHS-----CEEEEE
T ss_pred CCCCCEEEEECC--CCCCHHHHHHHHHHHC-----CCEEEE
T ss_conf 789956999898--8327999999999986-----997994
No 140
>2wjy_A Regulator of nonsense transcripts 1; alternative splicing, nonsense mediated decay, zinc-finger, ATP-binding, polymorphism, metal-binding, UPF2; 2.50A {Homo sapiens} PDB: 2wjv_A 2iyk_A
Probab=65.46 E-value=3.7 Score=20.22 Aligned_cols=29 Identities=28% Similarity=0.273 Sum_probs=21.1
Q ss_pred EEC--CCCCCHHHHHHHHHHHHCC-CCEEEEE
Q ss_conf 007--8887489999999985247-3159876
Q gi|254780401|r 53 VMG--GTGKTPTALAIAKAVIDKN-LKPGFLS 81 (338)
Q Consensus 53 tvG--GtGKTP~v~~l~~~l~~~g-~~~~ils 81 (338)
..| |||||-++..++..|..++ .++.|.+
T Consensus 376 IqGPPGTGKT~Ti~~iI~~L~~~~~~kILVcA 407 (800)
T 2wjy_A 376 IQGPPGTGKTVTSATIVYHLARQGNGPVLVCA 407 (800)
T ss_dssp EECCTTSCHHHHHHHHHHHHHTTCSSCEEEEE
T ss_pred EECCCCCCHHHHHHHHHHHHHHHCCCCEEEEE
T ss_conf 98999999509999999999970689899994
No 141
>2xgj_A ATP-dependent RNA helicase DOB1; hydrolase-RNA complex, hydrolase, tramp, exosome, DEAD, nucleotide-binding; HET: ADP; 2.90A {Saccharomyces cerevisiae}
Probab=65.16 E-value=6.9 Score=18.29 Aligned_cols=27 Identities=26% Similarity=0.219 Sum_probs=17.2
Q ss_pred ECCCCCCHHHHH-HHHHHHHCCCCEEEEE
Q ss_conf 078887489999-9999852473159876
Q gi|254780401|r 54 MGGTGKTPTALA-IAKAVIDKNLKPGFLS 81 (338)
Q Consensus 54 vGGtGKTP~v~~-l~~~l~~~g~~~~ils 81 (338)
--|||||=+..+ +++.|+ .|.++.+++
T Consensus 109 pTGSGKT~va~~~i~~~l~-~~~rvl~l~ 136 (1010)
T 2xgj_A 109 HTSAGKTVVAEYAIAQSLK-NKQRVIYTS 136 (1010)
T ss_dssp CTTSCHHHHHHHHHHHHHH-TTCEEEEEE
T ss_pred CCCCHHHHHHHHHHHHHHH-CCCCEEEEC
T ss_conf 8986599999999999996-099599998
No 142
>2qt1_A Nicotinamide riboside kinase 1; non-protein kinase, NAD+, NRK1, nicotinic acid riboside kinase activity, NAD biosynthesis; HET: NNR; 1.32A {Homo sapiens} PDB: 2qsy_A* 2qsz_A* 2qt0_A* 2p0e_A* 2qg6_A* 2ql6_A*
Probab=64.82 E-value=5.7 Score=18.88 Aligned_cols=32 Identities=25% Similarity=0.259 Sum_probs=19.7
Q ss_pred CCCEEEE-CCEEECCCCCCHHHHHHHHHHHHCCCCEEEEE
Q ss_conf 8988998-23000788874899999999852473159876
Q gi|254780401|r 43 PIPVICV-GGFVMGGTGKTPTALAIAKAVIDKNLKPGFLS 81 (338)
Q Consensus 43 ~~pVI~V-GNitvGGtGKTP~v~~l~~~l~~~g~~~~ils 81 (338)
..-||.| |+. |+|||-++-.|++.|. ...+++
T Consensus 20 k~~iI~I~G~~---GSGKTTla~~L~~~l~----~~~vi~ 52 (207)
T 2qt1_A 20 KTFIIGISGVT---NSGKTTLAKNLQKHLP----NCSVIS 52 (207)
T ss_dssp CCEEEEEEEST---TSSHHHHHHHHHTTST----TEEEEE
T ss_pred CEEEEEEECCC---CCCHHHHHHHHHHHCC----CCEEEE
T ss_conf 83999998989---8859999999999859----984998
No 143
>3hn7_A UDP-N-acetylmuramate-L-alanine ligase; YP_263340.1, structural genomics, joint center for structural genomics, JCSG; HET: MSE; 1.65A {Psychrobacter arcticus 273-4}
Probab=64.63 E-value=4.3 Score=19.79 Aligned_cols=34 Identities=35% Similarity=0.422 Sum_probs=28.1
Q ss_pred CCEEEECCEEECCCCCCHHHHHHHHHHHHCCCCEEEEE
Q ss_conf 98899823000788874899999999852473159876
Q gi|254780401|r 44 IPVICVGGFVMGGTGKTPTALAIAKAVIDKNLKPGFLS 81 (338)
Q Consensus 44 ~pVI~VGNitvGGtGKTP~v~~l~~~l~~~g~~~~ils 81 (338)
.+||+| +|=-|||-++.+++..|++.|++|+++.
T Consensus 122 ~~vI~V----TGTnGKTTTt~mi~~iL~~~g~~~~~~i 155 (524)
T 3hn7_A 122 RHVIAV----AGTHGKTTTTTMLAWILHYAGIDAGFLI 155 (524)
T ss_dssp SEEEEE----ECSSCHHHHHHHHHHHHHHTTCCCEEEC
T ss_pred CCEEEE----ECCCCCHHHHHHHHHHHHHCCCCCEEEE
T ss_conf 828999----7888825389999999997299862997
No 144
>2z4s_A Chromosomal replication initiator protein DNAA; AAA+ ATPase, domain III (ATPase domain), ATP-binding, cytoplasm, DNA replication; HET: ADP; 3.00A {Thermotoga maritima} PDB: 2z4r_A*
Probab=64.49 E-value=3.5 Score=20.39 Aligned_cols=15 Identities=7% Similarity=0.040 Sum_probs=9.5
Q ss_pred CCCCCCCCCHHHHHH
Q ss_conf 143323489899999
Q gi|254780401|r 253 SFGDHAHLSDKKIAY 267 (338)
Q Consensus 253 ~fpDHh~ys~~dl~~ 267 (338)
.-.+||..+.+|+..
T Consensus 350 ~Va~~y~i~~~dl~s 364 (440)
T 2z4s_A 350 IVAKVTGVPREEILS 364 (440)
T ss_dssp ---------------
T ss_pred HHHHHHCCCHHHHHC
T ss_conf 998882988999827
No 145
>2i3b_A HCR-ntpase, human cancer-related ntpase; AAA, rossmann, hydrolase; NMR {Homo sapiens} SCOP: c.37.1.11
Probab=64.10 E-value=3.1 Score=20.82 Aligned_cols=24 Identities=17% Similarity=0.207 Sum_probs=20.4
Q ss_pred CCCCCCHHHHHHHHHHHHCCCCEE
Q ss_conf 788874899999999852473159
Q gi|254780401|r 55 GGTGKTPTALAIAKAVIDKNLKPG 78 (338)
Q Consensus 55 GGtGKTP~v~~l~~~l~~~g~~~~ 78 (338)
-|+|||-++..+++.++..+..+.
T Consensus 10 ~GsGKTTL~~~l~~~l~~~~~~v~ 33 (189)
T 2i3b_A 10 PGVGKTTLIHKASEVLKSSGVPVD 33 (189)
T ss_dssp CSSCHHHHHHHHHHHHHHTTCCCE
T ss_pred CCCCHHHHHHHHHHHHCCCEEEEC
T ss_conf 982299999999866169969998
No 146
>1uz5_A MOEA protein, 402AA long hypothetical molybdopterin biosynthesis MOEA protein; MOEA molybdopterin, MOCF biosynthesis; 2.05A {Pyrococcus horikoshii} SCOP: b.85.6.1 b.103.1.1 c.57.1.2
Probab=63.89 E-value=7.3 Score=18.13 Aligned_cols=53 Identities=17% Similarity=0.197 Sum_probs=35.3
Q ss_pred CHHHHHHHHHHHCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCEEEEC------HHHHHHC
Q ss_conf 35789998874010000122143323489899999999756479879985------4663438
Q gi|254780401|r 233 DTEKFFTTVRQLGALIEQCYSFGDHAHLSDKKIAYLLDQAQQKGLILVTT------AKDAMRL 289 (338)
Q Consensus 233 ~P~~F~~~L~~~g~~i~~~~~fpDHh~ys~~dl~~i~~~a~~~~~~iiTT------EKD~VKL 289 (338)
|---+...|++.|+++...-.-+|. .+++....+.+.+..+.|||| ++|+|+=
T Consensus 208 N~~~l~a~l~~~G~~~~~~~~~~D~----~~~i~~~i~~~~~~~DivIttGG~S~G~~D~v~~ 266 (402)
T 1uz5_A 208 NGRALCDAINELGGEGIFMGVARDD----KESLKALIEKAVNVGDVVVISGGASGGTKDLTAS 266 (402)
T ss_dssp HHHHHHHHHHHHTSEEEEEEEECSS----HHHHHHHHHHHHHHCSEEEEECCC-----CHHHH
T ss_pred CHHHHHHHHHHCCCEEEECCCCCCH----HHHHHHHHHHCCCCCCEEEEECCCCCCCCHHHHH
T ss_conf 5999999998669727762666856----8999998763222354478754755885234999
No 147
>2pbq_A Molybdenum cofactor biosynthesis MOG; molybdopterin, MPT, structural genomics, NPPSFA; 1.70A {Aquifex aeolicus VF5} PDB: 2qq1_A 3k6a_A* 2f7w_A 2f7y_A 2fuw_A
Probab=63.51 E-value=3.1 Score=20.82 Aligned_cols=23 Identities=9% Similarity=0.102 Sum_probs=14.6
Q ss_pred CCCEEEEEECCCCHHHHHHHHHHH
Q ss_conf 686389874155357899988740
Q gi|254780401|r 221 SGKKVLAFSGIADTEKFFTTVRQL 244 (338)
Q Consensus 221 ~~k~v~afsGIa~P~~F~~~L~~~ 244 (338)
.++ -+.|+==|+|......|+..
T Consensus 126 ~~~-tlI~~LPGsp~av~~~l~~i 148 (178)
T 2pbq_A 126 RGS-CLIVNLPGKPQSIKVCLDAV 148 (178)
T ss_dssp ETT-EEEEEECSSHHHHHHHHHHH
T ss_pred CCC-EEEEECCCCHHHHHHHHHHH
T ss_conf 099-89998799878999999999
No 148
>3b85_A Phosphate starvation-inducible protein; PHOH2, ATPase, PFAM: PF02562, structural genomics, PSI-2; 2.35A {Corynebacterium glutamicum atcc 13032}
Probab=63.19 E-value=7.3 Score=18.14 Aligned_cols=35 Identities=37% Similarity=0.419 Sum_probs=22.4
Q ss_pred EEEECCEEECCCCCCHHHHHHHH-HHHHCCCCEEEEEEC
Q ss_conf 89982300078887489999999-985247315987604
Q gi|254780401|r 46 VICVGGFVMGGTGKTPTALAIAK-AVIDKNLKPGFLSRG 83 (338)
Q Consensus 46 VI~VGNitvGGtGKTP~v~~l~~-~l~~~g~~~~ilsRG 83 (338)
|++.| .-|||||=++++.|- .+++..++=.|+.|-
T Consensus 25 v~~~G---~AGTGKT~la~~~al~~l~~~~~~kiii~rp 60 (208)
T 3b85_A 25 VFGLG---PAGSGKTYLAMAKAVQALQSKQVSRIILTRP 60 (208)
T ss_dssp EEEEC---CTTSSTTHHHHHHHHHHHHTTSCSEEEEEEC
T ss_pred EEEEC---CCCCCHHHHHHHHHHHHHHCCCEEEEEEECC
T ss_conf 89987---9997399999999999852266145787206
No 149
>3crm_A TRNA delta(2)-isopentenylpyrophosphate transferase; ATP-binding, nucleotide-binding, nucleotidyltransferase, tRNA processing; 1.90A {Pseudomonas aeruginosa} PDB: 3crq_A 3crr_A
Probab=63.11 E-value=4.5 Score=19.62 Aligned_cols=31 Identities=35% Similarity=0.446 Sum_probs=22.8
Q ss_pred CEEEECCEEECCCCCCHHHHHHHHHHHHCCCCEEEEEE
Q ss_conf 88998230007888748999999998524731598760
Q gi|254780401|r 45 PVICVGGFVMGGTGKTPTALAIAKAVIDKNLKPGFLSR 82 (338)
Q Consensus 45 pVI~VGNitvGGtGKTP~v~~l~~~l~~~g~~~~ilsR 82 (338)
|||+|.--| |+|||-+++.||+.+ +..|||=
T Consensus 6 ~vi~I~GpT--asGKt~la~~lA~~~-----~~eIIsa 36 (323)
T 3crm_A 6 PAIFLMGPT--AAGKTDLAMALADAL-----PCELISV 36 (323)
T ss_dssp EEEEEECCT--TSCHHHHHHHHHHHS-----CEEEEEE
T ss_pred CEEEEECCC--CCCHHHHHHHHHHHC-----CCEEEEE
T ss_conf 689998977--116999999999987-----9979951
No 150
>2gas_A Isoflavone reductase; NADPH-dependent reductase, oxidoreductase; 1.60A {Medicago sativa}
Probab=63.01 E-value=4.9 Score=19.36 Aligned_cols=33 Identities=24% Similarity=0.156 Sum_probs=26.2
Q ss_pred EEECCCCCCHHHHHHHHHHHHCCCCEEEEEECCCC
Q ss_conf 00078887489999999985247315987604578
Q gi|254780401|r 52 FVMGGTGKTPTALAIAKAVIDKNLKPGFLSRGYGR 86 (338)
Q Consensus 52 itvGGtGKTP~v~~l~~~l~~~g~~~~ilsRGYg~ 86 (338)
+.+||||-. =..|++.|.++|++|.+++|.-..
T Consensus 6 LVtGatG~i--G~~lv~~Ll~~g~~V~~l~R~~~~ 38 (307)
T 2gas_A 6 LILGPTGAI--GRHIVWASIKAGNPTYALVRKTIT 38 (307)
T ss_dssp EEESTTSTT--HHHHHHHHHHHTCCEEEEECCSCC
T ss_pred EEECCCCHH--HHHHHHHHHHCCCEEEEEECCCCC
T ss_conf 998998489--999999999688959999778642
No 151
>3bos_A Putative DNA replication factor; YP_927791.1, putative DNA replication regulator HDA, structural genomics; HET: MSE CDP; 1.75A {Shewanella amazonensis SB2B}
Probab=62.56 E-value=5.1 Score=19.23 Aligned_cols=27 Identities=11% Similarity=0.097 Sum_probs=21.2
Q ss_pred CCCCCCHHHHHHHHHHHHCCCCEEEEE
Q ss_conf 788874899999999852473159876
Q gi|254780401|r 55 GGTGKTPTALAIAKAVIDKNLKPGFLS 81 (338)
Q Consensus 55 GGtGKTP~v~~l~~~l~~~g~~~~ils 81 (338)
-|||||-++..+++.+.+.+.++..++
T Consensus 61 ~GsGKThL~~ai~~~~~~~~~~~~~~~ 87 (242)
T 3bos_A 61 VKSGRTHLIHAACARANELERRSFYIP 87 (242)
T ss_dssp TTSSHHHHHHHHHHHHHHTTCCEEEEE
T ss_pred CCCCHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 999899999999998542113444448
No 152
>1pjr_A PCRA; DNA repair, DNA replication, SOS response, helicase, ATP- binding, DNA-binding; 2.50A {Geobacillus stearothermophilus} SCOP: c.37.1.19 c.37.1.19 PDB: 1qhg_A* 3pjr_A* 2pjr_A* 1qhh_B* 1qhh_D* 1qhh_A* 1qhh_C* 2pjr_B*
Probab=62.54 E-value=6.5 Score=18.47 Aligned_cols=36 Identities=17% Similarity=0.230 Sum_probs=21.4
Q ss_pred CCCEEEECCEEECCCCCCHHHHHHHHHHH-HCCC---CEEEEE
Q ss_conf 89889982300078887489999999985-2473---159876
Q gi|254780401|r 43 PIPVICVGGFVMGGTGKTPTALAIAKAVI-DKNL---KPGFLS 81 (338)
Q Consensus 43 ~~pVI~VGNitvGGtGKTP~v~~l~~~l~-~~g~---~~~ils 81 (338)
.-|++.++ .=|||||-+...-+.+|. +.|. ++.+||
T Consensus 24 ~g~~lV~A---gAGSGKT~~L~~ri~~Li~~~~~~p~~IL~lT 63 (724)
T 1pjr_A 24 EGPLLIMA---GAGSGKTRVLTHRIAYLMAEKHVAPWNILAIT 63 (724)
T ss_dssp SSCEEEEE---CTTSCHHHHHHHHHHHHHHTTCCCGGGEEEEE
T ss_pred CCCEEEEE---ECCHHHHHHHHHHHHHHHHCCCCCCCCEEEEE
T ss_conf 98989998---28448999999999999980998940199995
No 153
>2qby_A CDC6 homolog 1, cell division control protein 6 homolog 1; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=62.34 E-value=2.7 Score=21.23 Aligned_cols=26 Identities=27% Similarity=0.314 Sum_probs=20.6
Q ss_pred CEEEECCEEECCCCCCHHHHHHHHHHHHC
Q ss_conf 88998230007888748999999998524
Q gi|254780401|r 45 PVICVGGFVMGGTGKTPTALAIAKAVIDK 73 (338)
Q Consensus 45 pVI~VGNitvGGtGKTP~v~~l~~~l~~~ 73 (338)
.++..|- -|||||-++.++++.+.+.
T Consensus 47 ~ili~Gp---pGtGKT~l~~~la~~l~~~ 72 (386)
T 2qby_A 47 NIFIYGL---TGTGKTAVVKFVLSKLHKK 72 (386)
T ss_dssp CEEEEEC---TTSSHHHHHHHHHHHHHHH
T ss_pred EEEEECC---CCCHHHHHHHHHHHHHHHH
T ss_conf 0899879---9881999999999998752
No 154
>1p3d_A UDP-N-acetylmuramate--alanine ligase; alpha/beta protein; HET: UMA ANP; 1.70A {Haemophilus influenzae} SCOP: c.5.1.1 c.59.1.1 c.72.2.1 PDB: 1gqq_A* 1p31_A* 1gqy_A*
Probab=61.91 E-value=7.3 Score=18.13 Aligned_cols=37 Identities=32% Similarity=0.425 Sum_probs=29.1
Q ss_pred CEEEECCEEECCCCCCHHHHHHHHHHHHCCCCEEEEEECCC
Q ss_conf 88998230007888748999999998524731598760457
Q gi|254780401|r 45 PVICVGGFVMGGTGKTPTALAIAKAVIDKNLKPGFLSRGYG 85 (338)
Q Consensus 45 pVI~VGNitvGGtGKTP~v~~l~~~l~~~g~~~~ilsRGYg 85 (338)
+||+ ++|-.|||-++..++..|++.|++++.+.-|-+
T Consensus 119 ~~ia----VTGTnGKTTTt~li~~il~~~g~~~~~~~g~~~ 155 (475)
T 1p3d_A 119 HGIA----VAGTHGKTTTTAMISMIYTQAKLDPTFVNGGLV 155 (475)
T ss_dssp EEEE----EESSSCHHHHHHHHHHHHHHTTCCCEEEEEEEE
T ss_pred EEEE----EECCCCCCHHHHHHHHHHHHCCCCCEEEECCCC
T ss_conf 2578----865678751799999999977999789989814
No 155
>2w0m_A SSO2452; RECA, SSPF, unknown function; 2.0A {Sulfolobus solfataricus P2}
Probab=61.62 E-value=4.8 Score=19.41 Aligned_cols=27 Identities=22% Similarity=0.187 Sum_probs=23.6
Q ss_pred CCCCCCHHHHHHHHHHHHCCCCEEEEE
Q ss_conf 788874899999999852473159876
Q gi|254780401|r 55 GGTGKTPTALAIAKAVIDKNLKPGFLS 81 (338)
Q Consensus 55 GGtGKTP~v~~l~~~l~~~g~~~~ils 81 (338)
-|+|||-++..++......|.++..+|
T Consensus 32 ~G~GKT~~~~~~~~~~~~~~~~~~~~s 58 (235)
T 2w0m_A 32 PGTGKTIFSLHFIAKGLRDGDPCIYVT 58 (235)
T ss_dssp TTSSHHHHHHHHHHHHHHHTCCEEEEE
T ss_pred CCCCHHHHHHHHHHHHHHHHHCCCCCC
T ss_conf 998899999999999877521344333
No 156
>1qyd_A Pinoresinol-lariciresinol reductase; NADPH-dependent aromatic alcohol reductases, pcber, PLR, IFR, lignans, isoflavonoids, plant protein; 2.50A {Thuja plicata} SCOP: c.2.1.2
Probab=61.46 E-value=5.4 Score=19.07 Aligned_cols=32 Identities=28% Similarity=0.264 Sum_probs=25.8
Q ss_pred EEECCCCCCHHHHHHHHHHHHCCCCEEEEEECCC
Q ss_conf 0007888748999999998524731598760457
Q gi|254780401|r 52 FVMGGTGKTPTALAIAKAVIDKNLKPGFLSRGYG 85 (338)
Q Consensus 52 itvGGtGKTP~v~~l~~~l~~~g~~~~ilsRGYg 85 (338)
+.+||||-. =..|++.|.++|++|.+++|.-.
T Consensus 8 LVtGatG~i--G~~l~~~L~~~g~~V~~l~R~~~ 39 (313)
T 1qyd_A 8 LIVGGTGYI--GKRIVNASISLGHPTYVLFRPEV 39 (313)
T ss_dssp EEESTTSTT--HHHHHHHHHHTTCCEEEECCSCC
T ss_pred EEECCCCHH--HHHHHHHHHHCCCEEEEEECCCC
T ss_conf 998998489--99999999978896999989974
No 157
>2dr3_A UPF0273 protein PH0284; RECA superfamily ATPase, hexamer, X-RAY diffraction, structural genomics, NPPSFA; HET: ADP; 2.00A {Pyrococcus horikoshii OT3}
Probab=61.26 E-value=5.6 Score=18.96 Aligned_cols=28 Identities=18% Similarity=0.069 Sum_probs=24.4
Q ss_pred CCCCCCHHHHHHHHHHHHCCCCEEEEEE
Q ss_conf 7888748999999998524731598760
Q gi|254780401|r 55 GGTGKTPTALAIAKAVIDKNLKPGFLSR 82 (338)
Q Consensus 55 GGtGKTP~v~~l~~~l~~~g~~~~ilsR 82 (338)
.|+|||-++..++......|.++..+|-
T Consensus 32 ~GsGKT~l~l~l~~~~~~~~~~v~~is~ 59 (247)
T 2dr3_A 32 PGTGKTIFSQQFLWNGLKMGEPGIYVAL 59 (247)
T ss_dssp TTSSHHHHHHHHHHHHHHTTCCEEEEES
T ss_pred CCCCHHHHHHHHHHHHHHCCCCEEECCC
T ss_conf 9988999999999999874998710356
No 158
>3on3_A Keto/oxoacid ferredoxin oxidoreductase, gamma SUB; structural genomics, PSI-2, protein structure initiative; 2.19A {Geobacter sulfurreducens}
Probab=61.08 E-value=8.1 Score=17.79 Aligned_cols=101 Identities=13% Similarity=0.160 Sum_probs=58.2
Q ss_pred ECCCCCCHHHHHHHHHHH-HCCCCEEEEEECCCCCCCCCEEEECCCCCHHHHCCHHHHHH--HCCCCCCCCCHHHHHHHH
Q ss_conf 078887489999999985-24731598760457877775587145678877042123322--057634652012256641
Q gi|254780401|r 54 MGGTGKTPTALAIAKAVI-DKNLKPGFLSRGYGRKSRISFRVDLEKHSAYDVGDEPLLLA--RRAVTIVTSDRKIGVQML 130 (338)
Q Consensus 54 vGGtGKTP~v~~l~~~l~-~~g~~~~ilsRGYg~~~~~~~~v~~~~~~~~~vGDEp~lla--~~~pv~V~~~R~~~~~~~ 130 (338)
+||.|=--+...|++.+. ..|+.+. .++-||...+|...... --++|||.-.. ..+.++|+-+.....+..
T Consensus 13 ~gGqGv~t~g~ila~a~~~~~G~~v~-~~~~ygs~~RGG~~~~~-----vris~~~i~~~~~~~~D~lval~~~~~~~~~ 86 (183)
T 3on3_A 13 AGGQGLILAGVIMAEAASIYDGKQAV-QSQSYGPEARGGASKSE-----VIISDGPVDYPKATQCDALLALTQEACDKYS 86 (183)
T ss_dssp CTTSCHHHHHHHHHHHHHHTTCCEEE-EEEEECSSCSSSCEEEE-----EEEECC--------CCSEEEESSHHHHHHST
T ss_pred ECCHHHHHHHHHHHHHHHHHCCCEEE-EEECCCHHHHCCCEEEE-----EEEECCCCCCCCCCCCCEEEEECHHHHHHHH
T ss_conf 28367999999999999985598089-86467877718825999-----9991785467456668978997899999986
Q ss_pred CCCC-CCEEEECCCCCCCCCCCEEEEEEECC
Q ss_conf 0245-74799718322344123069999618
Q gi|254780401|r 131 LQEG-VDIIIMDDGFHSADLQADFSLIVVNS 160 (338)
Q Consensus 131 ~~~~-~diiIlDDGfQh~~l~rdl~Ivl~d~ 160 (338)
.... -.++|.|..+-.....++..++.+|+
T Consensus 87 ~~l~~~g~vi~~~~~~~~~~~~~~~~~~i~~ 117 (183)
T 3on3_A 87 ADLKEGGVLLVDSDLVTKLPPGNYQTTAFNI 117 (183)
T ss_dssp TTSCTTCEEEEETTTCCSCCCSCCEEEEECH
T ss_pred CCCCCCCEEECCCCCCCCCCCCCCEEECCCH
T ss_conf 4678993795276445556876653853679
No 159
>1jf8_A Arsenate reductase; ptpase I fold, P-loop, sulfinic acid, oxidoreductase; 1.12A {Staphylococcus aureus} SCOP: c.44.1.1 PDB: 1jfv_A 2fxi_A 1lju_A* 1rxi_A 1rxe_A 1ljl_A 2cd7_A 1lk0_A
Probab=60.80 E-value=3.3 Score=20.59 Aligned_cols=35 Identities=20% Similarity=0.234 Sum_probs=26.5
Q ss_pred CCCEEEECCEEECCCCCCHHHHHHHHHHHHCCCCEEEEEECC
Q ss_conf 898899823000788874899999999852473159876045
Q gi|254780401|r 43 PIPVICVGGFVMGGTGKTPTALAIAKAVIDKNLKPGFLSRGY 84 (338)
Q Consensus 43 ~~pVI~VGNitvGGtGKTP~v~~l~~~l~~~g~~~~ilsRGY 84 (338)
.|-.||.||+ +-.|++.++++.+... +..+-|-|-
T Consensus 5 ~IlFVC~gN~-----cRS~mAEa~~~~~~~~--~~~v~SAG~ 39 (131)
T 1jf8_A 5 TIYFISTGNS-----ARSQMAEGWGKEILGE--GWNVYSAGI 39 (131)
T ss_dssp EEEEEESSSS-----SHHHHHHHHHHHHSTT--TEEEEEEES
T ss_pred EEEEEECCCC-----HHHHHHHHHHHHHCCC--CEEEECCCC
T ss_conf 7999939984-----7999999999974889--689953664
No 160
>3dhn_A NAD-dependent epimerase/dehydratase; reductase, PF01370, Q89Z24_bactn, NESG, BTR310, structural genomics, PSI-2; 2.00A {Bacteroides thetaiotaomicron}
Probab=60.40 E-value=6.1 Score=18.69 Aligned_cols=30 Identities=13% Similarity=0.333 Sum_probs=24.5
Q ss_pred EEECCCCCCHHHHHHHHHHHHCCCCEEEEEEC
Q ss_conf 00078887489999999985247315987604
Q gi|254780401|r 52 FVMGGTGKTPTALAIAKAVIDKNLKPGFLSRG 83 (338)
Q Consensus 52 itvGGtGKTP~v~~l~~~l~~~g~~~~ilsRG 83 (338)
+.+||||.. =.++++.|.++|++|.+++|.
T Consensus 8 lItGatG~i--G~~l~~~Ll~~g~~V~~l~R~ 37 (227)
T 3dhn_A 8 VLIGASGFV--GSALLNEALNRGFEVTAVVRH 37 (227)
T ss_dssp EEETCCHHH--HHHHHHHHHTTTCEEEEECSC
T ss_pred EEECCCCHH--HHHHHHHHHHCCCEEEEEECC
T ss_conf 998899889--999999999784989999868
No 161
>2vhj_A Ntpase P4, P4; non- hydrolysable ATP analogue, hydrolase, virus dsRNA, molecular motor, packaging ATPase, hexameric helicase; HET: ADP; 1.80A {Pseudomonas phage PHI12} PDB: 2vhq_A* 1w44_A* 1w46_A* 1w47_A* 1w48_A* 1w49_A* 1w4a_A* 1w4b_A* 1w4c_A 2vht_A* 2vhu_A* 2vhc_A*
Probab=60.33 E-value=3.7 Score=20.22 Aligned_cols=23 Identities=35% Similarity=0.579 Sum_probs=17.4
Q ss_pred CCEEE---CCCCCCHHHHHHHHHHHH
Q ss_conf 23000---788874899999999852
Q gi|254780401|r 50 GGFVM---GGTGKTPTALAIAKAVID 72 (338)
Q Consensus 50 GNitv---GGtGKTP~v~~l~~~l~~ 72 (338)
|++-+ .|||||.++..||+.+-.
T Consensus 124 g~~l~~GppG~GKT~la~alA~~~~~ 149 (331)
T 2vhj_A 124 GMVIVTGKGNSGKTPLVHALGEALGG 149 (331)
T ss_dssp EEEEEECSCSSSHHHHHHHHHHHHHT
T ss_pred CEEEEECCCCCCHHHHHHHHHHHHCC
T ss_conf 80787789998799999999998557
No 162
>2qby_B CDC6 homolog 3, cell division control protein 6 homolog 3; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=60.03 E-value=3.4 Score=20.49 Aligned_cols=24 Identities=29% Similarity=0.416 Sum_probs=19.3
Q ss_pred EEEECCEEECCCCCCHHHHHHHHHHHH
Q ss_conf 899823000788874899999999852
Q gi|254780401|r 46 VICVGGFVMGGTGKTPTALAIAKAVID 72 (338)
Q Consensus 46 VI~VGNitvGGtGKTP~v~~l~~~l~~ 72 (338)
++-+| ..|||||-++.++++.|..
T Consensus 48 ~li~G---ppG~GKTtlar~v~~~L~~ 71 (384)
T 2qby_B 48 NLFLG---LTGTGKTFVSKYIFNEIEE 71 (384)
T ss_dssp EEEEE---CTTSSHHHHHHHHHHHHHH
T ss_pred EEEEC---CCCCCHHHHHHHHHHHHHH
T ss_conf 89987---9988299999999999876
No 163
>2i2w_A Phosphoheptose isomerase; lipopolysaccharide biosynthesis; 1.95A {Escherichia coli} PDB: 2i22_A 1x94_A
Probab=59.74 E-value=8.6 Score=17.63 Aligned_cols=24 Identities=25% Similarity=0.479 Sum_probs=9.9
Q ss_pred HHHHHHHHCCC-EEEECHHHHHHCC
Q ss_conf 99997564798-7998546634382
Q gi|254780401|r 267 YLLDQAQQKGL-ILVTTAKDAMRLH 290 (338)
Q Consensus 267 ~i~~~a~~~~~-~iiTTEKD~VKL~ 290 (338)
+.++.|++.+. .+..|-+|--++.
T Consensus 149 ~al~~Ak~~G~~ti~lTg~~g~~l~ 173 (212)
T 2i2w_A 149 KAIAAAREKGMKVITLTGKDGGKMA 173 (212)
T ss_dssp HHHHHHHHHTCEEEEEEETTCGGGT
T ss_pred HHHHHHHHCCCEEEEEECCCCCHHH
T ss_conf 9999999859989999778873367
No 164
>2v54_A DTMP kinase, thymidylate kinase; nucleotide biosynthesis, ATP-binding, nucleotide-binding, poxvirus, transferase; HET: TYD POP; 2.4A {Vaccinia virus copenhagen} PDB: 2w0s_A*
Probab=59.70 E-value=2.5 Score=21.49 Aligned_cols=23 Identities=22% Similarity=0.377 Sum_probs=19.5
Q ss_pred CCCCCCHHHHHHHHHHHHCCCCE
Q ss_conf 78887489999999985247315
Q gi|254780401|r 55 GGTGKTPTALAIAKAVIDKNLKP 77 (338)
Q Consensus 55 GGtGKTP~v~~l~~~l~~~g~~~ 77 (338)
-|+|||-.+..|++.|..+|.++
T Consensus 13 dGsGKtT~~~~L~~~l~~~~~~~ 35 (204)
T 2v54_A 13 DKSGKTTQCMNIMESIPANTIKY 35 (204)
T ss_dssp TTSSHHHHHHHHHHTSCGGGEEE
T ss_pred CCCCHHHHHHHHHHHHHHCCCEE
T ss_conf 88859999999999984689989
No 165
>3jvv_A Twitching mobility protein; hexameric P-loop ATPase, secretion ATPase, ATP-binding, FIMB nucleotide-binding, transport; HET: ACP CIT; 2.60A {Pseudomonas aeruginosa} PDB: 3jvu_A*
Probab=59.69 E-value=8.1 Score=17.82 Aligned_cols=10 Identities=10% Similarity=0.152 Sum_probs=4.9
Q ss_pred EECHHHHHHC
Q ss_conf 9854663438
Q gi|254780401|r 280 VTTAKDAMRL 289 (338)
Q Consensus 280 iTTEKD~VKL 289 (338)
++|++++.+-
T Consensus 328 ~i~~eea~~~ 337 (356)
T 3jvv_A 328 LISRENAREK 337 (356)
T ss_dssp --CHHHHHHT
T ss_pred CCCHHHHHHH
T ss_conf 9999999987
No 166
>1rpn_A GDP-mannose 4,6-dehydratase; short-chain dehydrogenase/reductase, rossmann fold, lyase; HET: NDP GDP; 2.15A {Pseudomonas aeruginosa} SCOP: c.2.1.2
Probab=59.66 E-value=8.6 Score=17.62 Aligned_cols=32 Identities=25% Similarity=0.265 Sum_probs=26.5
Q ss_pred EEECCCCCCHHHHHHHHHHHHCCCCEEEEEECCC
Q ss_conf 0007888748999999998524731598760457
Q gi|254780401|r 52 FVMGGTGKTPTALAIAKAVIDKNLKPGFLSRGYG 85 (338)
Q Consensus 52 itvGGtGKTP~v~~l~~~l~~~g~~~~ilsRGYg 85 (338)
|.+|||| -+=.+|++.|.++|++|..+.|..-
T Consensus 18 LITGatG--fIGs~l~~~Ll~~g~~V~~i~r~~~ 49 (335)
T 1rpn_A 18 LVTGITG--QDGAYLAKLLLEKGYRVHGLVARRS 49 (335)
T ss_dssp EEETTTS--HHHHHHHHHHHHTTCEEEEEECCCS
T ss_pred EEECCCC--HHHHHHHHHHHHCCCEEEEEECCCC
T ss_conf 9975887--8999999999978498999989997
No 167
>1via_A Shikimate kinase; structural genomics, transferase; HET: MSE; 1.57A {Campylobacter jejuni} SCOP: c.37.1.2
Probab=59.49 E-value=5.8 Score=18.83 Aligned_cols=25 Identities=32% Similarity=0.495 Sum_probs=20.2
Q ss_pred CCEEEECCEEECCCCCCHHHHHHHHHHH
Q ss_conf 9889982300078887489999999985
Q gi|254780401|r 44 IPVICVGGFVMGGTGKTPTALAIAKAVI 71 (338)
Q Consensus 44 ~pVI~VGNitvGGtGKTP~v~~l~~~l~ 71 (338)
-.+|.+| +-|+|||-+...||+.|.
T Consensus 5 k~Iil~G---~~GsGKtTi~k~La~~l~ 29 (175)
T 1via_A 5 KNIVFIG---FMGSGKSTLARALAKDLD 29 (175)
T ss_dssp CCEEEEC---CTTSCHHHHHHHHHHHHT
T ss_pred CEEEEEC---CCCCCHHHHHHHHHHHHC
T ss_conf 8499986---899989999999999959
No 168
>3e8x_A Putative NAD-dependent epimerase/dehydratase; structural genomics, APC7755, NADP, PSI-2, protein structure initiative; HET: MSE NAP; 2.10A {Bacillus halodurans}
Probab=59.46 E-value=6.5 Score=18.47 Aligned_cols=30 Identities=27% Similarity=0.421 Sum_probs=25.0
Q ss_pred EEECCCCCCHHHHHHHHHHHHCCCCEEEEEEC
Q ss_conf 00078887489999999985247315987604
Q gi|254780401|r 52 FVMGGTGKTPTALAIAKAVIDKNLKPGFLSRG 83 (338)
Q Consensus 52 itvGGtGKTP~v~~l~~~l~~~g~~~~ilsRG 83 (338)
+.+||||.+ =.++++.|.++|++|..++|.
T Consensus 25 lI~GasG~i--G~~lv~~Ll~~g~~V~~l~R~ 54 (236)
T 3e8x_A 25 LVVGANGKV--ARYLLSELKNKGHEPVAMVRN 54 (236)
T ss_dssp EEETTTSHH--HHHHHHHHHHTTCEEEEEESS
T ss_pred EEECCCCHH--HHHHHHHHHHCCCEEEEEECC
T ss_conf 999998889--999999999785989999888
No 169
>3bor_A Human initiation factor 4A-II; translation initiation, DEAD BOX, structural genomics, helicase, alternative splicing, ATP-binding; 1.85A {Homo sapiens} PDB: 2g9n_A*
Probab=59.46 E-value=5.9 Score=18.78 Aligned_cols=23 Identities=13% Similarity=0.075 Sum_probs=10.9
Q ss_pred EEEECCCCCHHHHCCHHHHHHHC
Q ss_conf 58714567887704212332205
Q gi|254780401|r 92 FRVDLEKHSAYDVGDEPLLLARR 114 (338)
Q Consensus 92 ~~v~~~~~~~~~vGDEp~lla~~ 114 (338)
+.+.+...-+.++-++...++..
T Consensus 102 lIl~PtreLa~Qi~~~~~~l~~~ 124 (237)
T 3bor_A 102 LVLAPTRELAQQIQKVILALGDY 124 (237)
T ss_dssp EEECSSHHHHHHHHHHHHHHTTT
T ss_pred EEECCHHHHHHHHHHHHHHHCCC
T ss_conf 99527188999999999997053
No 170
>2q1w_A Putative nucleotide sugar epimerase/ dehydratase; rossman fold, protein-NAD complex, sugar binding protein; HET: NAD; 2.19A {Bordetella bronchiseptica}
Probab=59.30 E-value=8.7 Score=17.58 Aligned_cols=32 Identities=19% Similarity=0.161 Sum_probs=24.7
Q ss_pred EEECCCCCCHHHHHHHHHHHHCCCCEEEEEECCC
Q ss_conf 0007888748999999998524731598760457
Q gi|254780401|r 52 FVMGGTGKTPTALAIAKAVIDKNLKPGFLSRGYG 85 (338)
Q Consensus 52 itvGGtGKTP~v~~l~~~l~~~g~~~~ilsRGYg 85 (338)
|++|||| =+=.+|++.|.++|++|..+.|.-.
T Consensus 25 LVTGasG--fiG~~lv~~L~~~g~~V~~id~~~~ 56 (333)
T 2q1w_A 25 FITGICG--QIGSHIAELLLERGDKVVGIDNFAT 56 (333)
T ss_dssp EEETTTS--HHHHHHHHHHHHTTCEEEEEECCSS
T ss_pred EEECCCC--HHHHHHHHHHHHCCCEEEEEECCCC
T ss_conf 9907887--8999999999978298999979985
No 171
>3h1t_A Type I site-specific restriction-modification system, R (restriction) subunit; hydrolase, restriction enzyme HSDR, ATP-binding; 2.30A {Vibrio vulnificus}
Probab=59.21 E-value=6.3 Score=18.59 Aligned_cols=22 Identities=32% Similarity=0.383 Sum_probs=17.7
Q ss_pred EECCCCCCHHHHHHHHHHHHCC
Q ss_conf 0078887489999999985247
Q gi|254780401|r 53 VMGGTGKTPTALAIAKAVIDKN 74 (338)
Q Consensus 53 tvGGtGKTP~v~~l~~~l~~~g 74 (338)
..=|||||=+..+++..+.+.+
T Consensus 205 ~aTGSGKT~~a~~li~~ll~~~ 226 (590)
T 3h1t_A 205 MATGTGKTVVAFQISWKLWSAR 226 (590)
T ss_dssp ECTTSCHHHHHHHHHHHHHHTT
T ss_pred CCCCCCHHHHHHHHHHHHHHHC
T ss_conf 8999978999999999999841
No 172
>2r6a_A DNAB helicase, replicative helicase; replication, DNAB; 2.90A {Geobacillus stearothermophilus} PDB: 2r6c_A 2r6d_A 2r6e_A 2vyf_A 2vye_A
Probab=59.18 E-value=6.4 Score=18.53 Aligned_cols=33 Identities=27% Similarity=0.351 Sum_probs=25.0
Q ss_pred CCEEE----CCCCCCHHHHHHHHH-HHHCCCCEEEEEE
Q ss_conf 23000----788874899999999-8524731598760
Q gi|254780401|r 50 GGFVM----GGTGKTPTALAIAKA-VIDKNLKPGFLSR 82 (338)
Q Consensus 50 GNitv----GGtGKTP~v~~l~~~-l~~~g~~~~ilsR 82 (338)
|++++ =|.|||-++..++.. ..+.|++|+++|-
T Consensus 203 g~l~vi~a~pg~GKT~~~~~~a~~~~~~~g~~Vl~~Sl 240 (454)
T 2r6a_A 203 SDLIIVAARPSVGKTAFALNIAQNVATKTNENVAIFSL 240 (454)
T ss_dssp TCEEEEECCTTSCHHHHHHHHHHHHHHHSSCCEEEEES
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHHHHHCCCCEEEEEC
T ss_conf 87799995677653299998997576625980799807
No 173
>3h4m_A Proteasome-activating nucleotidase; ATPase, PAN, ATP-binding, cytoplasm, nucleotide- binding, hydrolase; HET: ADP; 3.11A {Methanocaldococcus jannaschii}
Probab=58.98 E-value=5.2 Score=19.19 Aligned_cols=35 Identities=31% Similarity=0.261 Sum_probs=24.9
Q ss_pred CCCCCEEEECCEEECCCCCCHHHHHHHHHHHHCCCCEEEEE
Q ss_conf 38898899823000788874899999999852473159876
Q gi|254780401|r 41 HAPIPVICVGGFVMGGTGKTPTALAIAKAVIDKNLKPGFLS 81 (338)
Q Consensus 41 ~~~~pVI~VGNitvGGtGKTP~v~~l~~~l~~~g~~~~ils 81 (338)
..|..|+-.|.- |||||-++.++|+.+ |.....++
T Consensus 49 ~~p~giLL~Gpp---GtGKT~la~~iA~~~---~~~~~~i~ 83 (285)
T 3h4m_A 49 EPPKGILLYGPP---GTGKTLLAKAVATET---NATFIRVV 83 (285)
T ss_dssp CCCSEEEEESSS---SSSHHHHHHHHHHHT---TCEEEEEE
T ss_pred CCCCEEEEECCC---CCCHHHHHHHHHHHC---CCCEEEEE
T ss_conf 988657887989---998779999999980---99868988
No 174
>2ocp_A DGK, deoxyguanosine kinase; protein-nucleotide complex, transferase; HET: DTP; 2.80A {Homo sapiens} SCOP: c.37.1.1
Probab=58.92 E-value=2.9 Score=20.97 Aligned_cols=31 Identities=13% Similarity=0.148 Sum_probs=22.9
Q ss_pred CCEEEECCEEECCCCCCHHHHHHHHHHHHCCCCE
Q ss_conf 9889982300078887489999999985247315
Q gi|254780401|r 44 IPVICVGGFVMGGTGKTPTALAIAKAVIDKNLKP 77 (338)
Q Consensus 44 ~pVI~VGNitvGGtGKTP~v~~l~~~l~~~g~~~ 77 (338)
..|..=||+ |+|||-.+..|++.|.+.++..
T Consensus 3 kfI~iEG~~---GsGKST~~~~L~~~l~~~~i~~ 33 (241)
T 2ocp_A 3 RRLSIEGNI---AVGKSTFVKLLTKTYPEWHVAT 33 (241)
T ss_dssp EEEEEEECT---TSSHHHHHHHHHHHCTTSEEEC
T ss_pred EEEEEECCC---CCCHHHHHHHHHHHHHHCCCEE
T ss_conf 089998999---8849999999999983159845
No 175
>1nlf_A Regulatory protein REPA; replicative DNA helicase structural changes, replication; 1.95A {Escherichia coli} SCOP: c.37.1.11 PDB: 1g8y_A 1olo_A
Probab=58.55 E-value=9 Score=17.50 Aligned_cols=18 Identities=39% Similarity=0.641 Sum_probs=15.9
Q ss_pred CCCCCCHHHHHHHHHHHH
Q ss_conf 788874899999999852
Q gi|254780401|r 55 GGTGKTPTALAIAKAVID 72 (338)
Q Consensus 55 GGtGKTP~v~~l~~~l~~ 72 (338)
+|+|||-+++.++-.+..
T Consensus 39 ~G~GKS~l~l~la~~ia~ 56 (279)
T 1nlf_A 39 GGAGKSMLALQLAAQIAG 56 (279)
T ss_dssp TTSSHHHHHHHHHHHHHT
T ss_pred CCCCHHHHHHHHHHHHHC
T ss_conf 989899999999999975
No 176
>1m7g_A Adenylylsulfate kinase; APS kinase, transferase, sulfate metabolism, nucleotide 2 kinase; HET: AV2 ADX ADP; 1.43A {Penicillium chrysogenum} SCOP: c.37.1.4 PDB: 1d6j_A* 1m7h_A* 3cr7_A*
Probab=57.75 E-value=4.2 Score=19.87 Aligned_cols=26 Identities=15% Similarity=0.347 Sum_probs=19.4
Q ss_pred CCCCCCHHHHHHHHHHHH-CCCCEEEE
Q ss_conf 788874899999999852-47315987
Q gi|254780401|r 55 GGTGKTPTALAIAKAVID-KNLKPGFL 80 (338)
Q Consensus 55 GGtGKTP~v~~l~~~l~~-~g~~~~il 80 (338)
=|||||-++..|++.|.+ .+.++.++
T Consensus 34 sGSGKTTiA~~L~~~L~~~~~~~~~~l 60 (211)
T 1m7g_A 34 SASGKSTLAVELEHQLVRDRRVHAYRL 60 (211)
T ss_dssp TTSSHHHHHHHHHHHHHHHHCCCEEEE
T ss_pred CCCCHHHHHHHHHHHHHHHCCCCEEEE
T ss_conf 999889999999999998639978998
No 177
>2i3d_A AGR_C_3351P, hypothetical protein ATU1826; structural genomics, APC5865, hydrolase, PSI-2, protein structure initiative; HET: MSE; 1.50A {Agrobacterium tumefaciens str} SCOP: c.69.1.36
Probab=57.50 E-value=6.9 Score=18.30 Aligned_cols=47 Identities=23% Similarity=0.270 Sum_probs=39.4
Q ss_pred CCCCEEEECCEEECCCCCCHHHHHHHHHHHHCCCCEE-EEEECCCCCC
Q ss_conf 8898899823000788874899999999852473159-8760457877
Q gi|254780401|r 42 APIPVICVGGFVMGGTGKTPTALAIAKAVIDKNLKPG-FLSRGYGRKS 88 (338)
Q Consensus 42 ~~~pVI~VGNitvGGtGKTP~v~~l~~~l~~~g~~~~-ilsRGYg~~~ 88 (338)
.|+-|||=+|=..|||=-.|++..+++.|.++|+.+. +=.||||+..
T Consensus 47 ~~vav~~HPhP~~GG~m~n~vv~~lA~~l~~~G~~vLrFnfRGvG~S~ 94 (249)
T 2i3d_A 47 APIAIILHPHPQFGGTMNNQIVYQLFYLFQKRGFTTLRFNFRSIGRSQ 94 (249)
T ss_dssp CCEEEEECCCGGGTCCTTSHHHHHHHHHHHHTTCEEEEECCTTSTTCC
T ss_pred CCEEEEECCCCCCCCCCCCHHHHHHHHHHHHCCCEEEEEECCCCCCCC
T ss_conf 998999799987378888879999999999789869995056525777
No 178
>2am1_A SP protein, UDP-N-acetylmuramoylalanine-D-glutamyl-lysine-D- alanyl-D-alanine ligase, MURF protein...; HET: 1LG; 2.50A {Streptococcus pneumoniae R6} PDB: 2am2_A*
Probab=57.38 E-value=6.2 Score=18.64 Aligned_cols=34 Identities=24% Similarity=0.253 Sum_probs=26.8
Q ss_pred CCCCEEEECCEEECCCCCCHHHHHHHHHHHHCCCCEEE
Q ss_conf 88988998230007888748999999998524731598
Q gi|254780401|r 42 APIPVICVGGFVMGGTGKTPTALAIAKAVIDKNLKPGF 79 (338)
Q Consensus 42 ~~~pVI~VGNitvGGtGKTP~v~~l~~~l~~~g~~~~i 79 (338)
++.+||.| +|=.|||-++.+++..|...|...+.
T Consensus 98 ~~~~vIgV----TGTnGKTTt~~~l~~iL~~~~~~~~~ 131 (454)
T 2am1_A 98 TTVDVFAV----TGSNGKTTTKDMLAHLLSTRYKTYKT 131 (454)
T ss_dssp HCCEEEEE----ECCCSSSCHHHHHHHHHTTTSCEEEC
T ss_pred CCCCEEEE----ECCCCCCCEEHHHHHHHHHHCCCEEC
T ss_conf 89858999----42588773202789987761673331
No 179
>1e9r_A Conjugal transfer protein TRWB; coupling protein, bacterial conjugation, F1-ATPase-like quaternary structure, ring helicases; 2.4A {Escherichia coli} SCOP: c.37.1.11 PDB: 1e9s_A 1gki_A* 1gl7_A* 1gl6_A*
Probab=57.05 E-value=6.5 Score=18.46 Aligned_cols=27 Identities=19% Similarity=0.143 Sum_probs=22.4
Q ss_pred CCCCCCHHHHHHHHHHHHCCCCEEEEE
Q ss_conf 788874899999999852473159876
Q gi|254780401|r 55 GGTGKTPTALAIAKAVIDKNLKPGFLS 81 (338)
Q Consensus 55 GGtGKTP~v~~l~~~l~~~g~~~~ils 81 (338)
=|+|||-++..++..+.++|..+.|+-
T Consensus 62 TGsGKT~~l~~ll~~~~~~g~~~iviD 88 (437)
T 1e9r_A 62 TGTGKSVLLRELAYTGLLRGDRMVIVD 88 (437)
T ss_dssp TTSSHHHHHHHHHHHHHHTTCEEEEEE
T ss_pred CCCCHHHHHHHHHHHHHHCCCCEEEEE
T ss_conf 998689999999999986899889997
No 180
>1svm_A Large T antigen; AAA+ fold, viral protein; HET: ATP; 1.94A {Simian virus 40} SCOP: c.37.1.20 PDB: 1svl_A* 1svo_A 1n25_A 2h1l_A
Probab=56.91 E-value=3.7 Score=20.24 Aligned_cols=23 Identities=26% Similarity=0.170 Sum_probs=18.0
Q ss_pred EEEECCEEECCCCCCHHHHHHHHHHH
Q ss_conf 89982300078887489999999985
Q gi|254780401|r 46 VICVGGFVMGGTGKTPTALAIAKAVI 71 (338)
Q Consensus 46 VI~VGNitvGGtGKTP~v~~l~~~l~ 71 (338)
++-.|= =|||||-++..||+.+.
T Consensus 172 iL~~GP---PGtGKT~lA~alA~~l~ 194 (377)
T 1svm_A 172 WLFKGP---IDSGKTTLAAALLELCG 194 (377)
T ss_dssp EEEECS---TTSSHHHHHHHHHHHHC
T ss_pred EEEECC---CCCCHHHHHHHHHHHCC
T ss_conf 999899---99988999999999859
No 181
>1vl0_A DTDP-4-dehydrorhamnose reductase, RFBD ortholog; 15025322, structural genomics, JCSG, protein structure initiative, PSI; HET: NAI UNL; 2.05A {Clostridium acetobutylicum atcc 824} SCOP: c.2.1.2
Probab=56.87 E-value=9.1 Score=17.46 Aligned_cols=30 Identities=20% Similarity=0.204 Sum_probs=25.0
Q ss_pred EEECCCCCCHHHHHHHHHHHHCCCCEEEEEEC
Q ss_conf 00078887489999999985247315987604
Q gi|254780401|r 52 FVMGGTGKTPTALAIAKAVIDKNLKPGFLSRG 83 (338)
Q Consensus 52 itvGGtGKTP~v~~l~~~l~~~g~~~~ilsRG 83 (338)
|.+|||| -+=-.|+++|.++|+.+..++|.
T Consensus 16 LItGatG--fIG~~lv~~L~~~g~~V~~~~r~ 45 (292)
T 1vl0_A 16 LITGANG--QLGREIQKQLKGKNVEVIPTDVQ 45 (292)
T ss_dssp EEESTTS--HHHHHHHHHHTTSSEEEEEECTT
T ss_pred EEECCCC--HHHHHHHHHHHHCCCEEEEEECH
T ss_conf 9989998--89999999998687989993231
No 182
>1htw_A HI0065; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; HET: ADP; 1.70A {Haemophilus influenzae} SCOP: c.37.1.18 PDB: 1fl9_A
Probab=56.49 E-value=3.3 Score=20.61 Aligned_cols=25 Identities=24% Similarity=0.384 Sum_probs=20.4
Q ss_pred EEEECCEEECCCCCCHHHHHHHHHHHHC
Q ss_conf 8998230007888748999999998524
Q gi|254780401|r 46 VICVGGFVMGGTGKTPTALAIAKAVIDK 73 (338)
Q Consensus 46 VI~VGNitvGGtGKTP~v~~l~~~l~~~ 73 (338)
|.-.|.+ |+|||-+|..+++.|--.
T Consensus 36 i~L~G~L---GaGKTtf~r~i~~~lg~~ 60 (158)
T 1htw_A 36 VYLNGDL---GAGKTTLTRGMLQGIGHQ 60 (158)
T ss_dssp EEEECST---TSSHHHHHHHHHHHTTCC
T ss_pred EEEECCC---CCCHHHHHHHHHHHHCCC
T ss_conf 9998898---688999999999982766
No 183
>3gz5_A MUTT/nudix family protein; DNA binding protein, nudix domain, WHTH domain; 2.20A {Shewanella oneidensis} PDB: 3gz6_A* 3gz8_A*
Probab=56.34 E-value=8 Score=17.85 Aligned_cols=44 Identities=16% Similarity=0.298 Sum_probs=25.4
Q ss_pred CCCEEEE--CCCCCCCCCCCEEEEEEECC-CCCCCCCCCCCCHHHH----HCCHHHHHH
Q ss_conf 5747997--18322344123069999618-4335665537613652----100255665
Q gi|254780401|r 134 GVDIIIM--DDGFHSADLQADFSLIVVNS-HRGLGNGLVFPAGPLR----VPLSRQLSY 185 (338)
Q Consensus 134 ~~diiIl--DDGfQh~~l~rdl~Ivl~d~-~~~~gn~~llPaGpLR----Ep~~~~l~r 185 (338)
.+|+||+ || .++.|+|+-- ..|+.+.+-||.|.+. |++..+..|
T Consensus 24 sVd~vif~~~~--------~~lkVLLvkR~~~P~~G~WaLPGG~ve~~~gEsl~eAA~R 74 (240)
T 3gz5_A 24 TVDAVLFTYHD--------QQLKVLLVQRSNHPFLGLWGLPGGFIDETCDESLEQTVLR 74 (240)
T ss_dssp EEEEEEEEEET--------TEEEEEEEECCSSSSTTCEECSEEECCTTTCSBHHHHHHH
T ss_pred EEEEEEEEEEC--------CCCEEEEEECCCCCCCCCEECCCEEECCCCCCCHHHHHHH
T ss_conf 69999999878--------9868999974689999978899457778889799999999
No 184
>2qzs_A Glycogen synthase; glycosyl-transferase, GT-B fold, rossmann fold, closed-form, ADP and glucose binding, glycogen biosynthesis; HET: GLC ADP 250; 2.20A {Escherichia coli} PDB: 2r4t_A* 2r4u_A* 3guh_A* 3cx4_A* 3cop_A* 3d1j_A
Probab=56.32 E-value=3.7 Score=20.22 Aligned_cols=32 Identities=19% Similarity=0.235 Sum_probs=27.0
Q ss_pred EECCCCCCHHHHHHHHHHHHCCCCEEEEEECCCC
Q ss_conf 0078887489999999985247315987604578
Q gi|254780401|r 53 VMGGTGKTPTALAIAKAVIDKNLKPGFLSRGYGR 86 (338)
Q Consensus 53 tvGGtGKTP~v~~l~~~l~~~g~~~~ilsRGYg~ 86 (338)
.+||-|. +|-.|++.|.++|..|.|++-+|+.
T Consensus 15 ~~GGl~~--~v~~L~~aL~~~Gh~V~VitP~y~~ 46 (485)
T 2qzs_A 15 KTGGLAD--VIGALPAAQIADGVDARVLLPAFPD 46 (485)
T ss_dssp CSSHHHH--HHHHHHHHHHHTTCEEEEEEECCHH
T ss_pred CCCCHHH--HHHHHHHHHHHCCCEEEEEECCCCC
T ss_conf 5466999--9999999999769979999689857
No 185
>1xp8_A RECA protein, recombinase A; recombination, radioresistance, DNA-repair, ATPase, DNA- binding protein, DNA binding protein; HET: SAP; 2.50A {Deinococcus radiodurans} SCOP: c.37.1.11 d.48.1.1
Probab=56.17 E-value=7 Score=18.26 Aligned_cols=42 Identities=26% Similarity=0.342 Sum_probs=31.0
Q ss_pred CCCCCCCEEEECCE-----------EEC---------CCCCCHHHHHHHHHHHHCCCCEEEE
Q ss_conf 43388988998230-----------007---------8887489999999985247315987
Q gi|254780401|r 39 RLHAPIPVICVGGF-----------VMG---------GTGKTPTALAIAKAVIDKNLKPGFL 80 (338)
Q Consensus 39 ~~~~~~pVI~VGNi-----------tvG---------GtGKTP~v~~l~~~l~~~g~~~~il 80 (338)
..+..+++|+-|.+ -.| +||||-+++.++...++.|..++.+
T Consensus 47 ~~~~~i~~IsTGs~~LD~~Lg~GGlp~Gritei~G~~~sGKTtlal~~~~~aQk~gg~~~yi 108 (366)
T 1xp8_A 47 ESKLDVQVVSTGSLSLDLALGVGGIPRGRITEIYGPESGGKTTLALAIVAQAQKAGGTCAFI 108 (366)
T ss_dssp CCCCCCCEECCSCHHHHHHTSSSSEETTSEEEEEESTTSSHHHHHHHHHHHHHHTTCCEEEE
T ss_pred CCCCCCCEECCCCHHHHHHHCCCCCCCCEEEEEECCCCCCHHHHHHHHHHHHHHCCCEEEEE
T ss_conf 66766665767869999987689975884999988987778999999999996279869998
No 186
>1x6v_B Bifunctional 3'-phosphoadenosine 5'- phosphosulfate synthethase 1; transferase, ATP sulfurylase, APS kinase, PAPS; HET: ADP; 1.75A {Homo sapiens} SCOP: b.122.1.3 c.26.1.5 c.37.1.4 PDB: 1xjq_B* 1xnj_B* 2qjf_A* 2ofx_A* 2ofw_A*
Probab=56.07 E-value=7 Score=18.24 Aligned_cols=27 Identities=22% Similarity=0.378 Sum_probs=23.7
Q ss_pred ECCCCCCHHHHHHHHHHHHCCCCEEEE
Q ss_conf 078887489999999985247315987
Q gi|254780401|r 54 MGGTGKTPTALAIAKAVIDKNLKPGFL 80 (338)
Q Consensus 54 vGGtGKTP~v~~l~~~l~~~g~~~~il 80 (338)
.=|+|||-+.-.|++.|...++.+.+|
T Consensus 60 lsGSGKSTIak~La~~L~~~~~~t~~L 86 (630)
T 1x6v_B 60 LSGAGKTTVSMALEEYLVCHGIPCYTL 86 (630)
T ss_dssp STTSSHHHHHHHHHHHHHHTTCCEEEE
T ss_pred CCCCCHHHHHHHHHHHHCCCCCCCEEE
T ss_conf 999999999999999964127897022
No 187
>2x5o_A UDP-N-acetylmuramoylalanine--D-glutamate ligase; ATP-binding, cell cycle, cell division, cell shape, cell WAL biogenesis/degradation; HET: KCX VSV; 1.46A {Escherichia coli} PDB: 2wjp_A* 2jfg_A* 2jff_A* 2jfh_A* 2uuo_A* 2uup_A* 2vtd_A* 2vte_A* 4uag_A* 1e0d_A* 1uag_A* 1eeh_A* 3uag_A* 2uag_A*
Probab=56.06 E-value=8.4 Score=17.70 Aligned_cols=38 Identities=16% Similarity=0.378 Sum_probs=29.6
Q ss_pred CCCEEEECCEEECCCCCCHHHHHHHHHHHHCCCCEEEEEECCC
Q ss_conf 8988998230007888748999999998524731598760457
Q gi|254780401|r 43 PIPVICVGGFVMGGTGKTPTALAIAKAVIDKNLKPGFLSRGYG 85 (338)
Q Consensus 43 ~~pVI~VGNitvGGtGKTP~v~~l~~~l~~~g~~~~ilsRGYg 85 (338)
+.|+|+| +|-.|||-++.+|+..|+..|..+.+. -.+|
T Consensus 103 ~~~~IaV----TGT~GKTTTt~~l~~iL~~~~~~~~~~-g~~g 140 (439)
T 2x5o_A 103 QAPIVAI----TGSNGKSTVTTLVGEMAKAAGVNVGVG-GNIG 140 (439)
T ss_dssp CSCEEEE----ECSSSHHHHHHHHHHHHHHTTCCEEEE-ESSS
T ss_pred CCCEEEE----CCCCCCHHHHHHHHHHHHHCCCCCEEC-CCCC
T ss_conf 6768998----789984479999999987638650113-5546
No 188
>1g8l_A Molybdopterin biosynthesis MOEA protein; molybdenum cofactor biosynthesis, metal binding protein; 1.95A {Escherichia coli} SCOP: b.85.6.1 b.103.1.1 c.57.1.2 PDB: 1fc5_A 1g8r_A 2nqu_A 2nro_A 2nqq_A 2nqk_A 2nqr_A 2nqm_A 2nqs_A 2nrp_A 2nqv_A 2nrs_A 2nqn_A
Probab=55.89 E-value=9.9 Score=17.20 Aligned_cols=50 Identities=12% Similarity=0.148 Sum_probs=23.1
Q ss_pred HHHHHHHHHHCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCEEEEC------HHHHHH
Q ss_conf 789998874010000122143323489899999999756479879985------466343
Q gi|254780401|r 235 EKFFTTVRQLGALIEQCYSFGDHAHLSDKKIAYLLDQAQQKGLILVTT------AKDAMR 288 (338)
Q Consensus 235 ~~F~~~L~~~g~~i~~~~~fpDHh~ys~~dl~~i~~~a~~~~~~iiTT------EKD~VK 288 (338)
--+...+++.|+++...-..+|. .+.+....+.+.++.+.|||| ++|+|+
T Consensus 207 ~~l~a~l~~~G~~~~~~~~~~Dd----~~~i~~~~~~~~~~~DiiIttGG~S~G~~D~v~ 262 (411)
T 1g8l_A 207 LAVHLMLEQLGCEVINLGIIRDD----PHALRAAFIEADSQADVVISSGGVSVGEADYTK 262 (411)
T ss_dssp HHHHHHHHHTTCEEEEEEEECSC----HHHHHHHHHHHHHHCSEEEECSSSCSSSCSHHH
T ss_pred HHHHHHHHHCCCEEEECCCCCCH----HHHHHHHHHHHHHCCCEEEECCCCCCCCCHHHH
T ss_conf 99999999779989974642686----999999987544203558851575568206689
No 189
>1rkx_A CDP-glucose-4,6-dehydratase; SDR, lyase; HET: NAD; 1.80A {Yersinia pseudotuberculosis} SCOP: c.2.1.2 PDB: 1wvg_A*
Probab=55.84 E-value=9.9 Score=17.19 Aligned_cols=32 Identities=19% Similarity=-0.040 Sum_probs=25.8
Q ss_pred EEECCCCCCHHHHHHHHHHHHCCCCEEEEEECCC
Q ss_conf 0007888748999999998524731598760457
Q gi|254780401|r 52 FVMGGTGKTPTALAIAKAVIDKNLKPGFLSRGYG 85 (338)
Q Consensus 52 itvGGtGKTP~v~~l~~~l~~~g~~~~ilsRGYg 85 (338)
|++|||| -+=.+|++.|.++|+.|.++.|.-.
T Consensus 13 LVTGgtG--fIGs~L~~~Ll~~g~~V~~~~r~~~ 44 (357)
T 1rkx_A 13 FVTGHTG--FKGGWLSLWLQTMGATVKGYSLTAP 44 (357)
T ss_dssp EEETTTS--HHHHHHHHHHHHTTCEEEEEESSCS
T ss_pred EEECCCC--HHHHHHHHHHHHCCCEEEEEECCCC
T ss_conf 9968997--8999999999977998999978998
No 190
>1db3_A GDP-mannose 4,6-dehydratase; NADP, GDP-fucose, lyase; 2.30A {Escherichia coli} SCOP: c.2.1.2
Probab=55.82 E-value=9.9 Score=17.19 Aligned_cols=29 Identities=21% Similarity=0.327 Sum_probs=23.8
Q ss_pred EEECCCCCCHHHHHHHHHHHHCCCCEEEEEE
Q ss_conf 0007888748999999998524731598760
Q gi|254780401|r 52 FVMGGTGKTPTALAIAKAVIDKNLKPGFLSR 82 (338)
Q Consensus 52 itvGGtGKTP~v~~l~~~l~~~g~~~~ilsR 82 (338)
|++|||| =+=.+|++.|.++|+.|..+.|
T Consensus 5 LVTGatG--fiG~~L~~~Ll~~g~~V~~~dr 33 (372)
T 1db3_A 5 LITGVTG--QDGSYLAEFLLEKGYEVHGIKR 33 (372)
T ss_dssp EEETTTS--HHHHHHHHHHHHTTCEEEEECC
T ss_pred EEECCCC--HHHHHHHHHHHHCCCEEEEEEC
T ss_conf 9948887--8999999999978598999978
No 191
>2c29_D Dihydroflavonol 4-reductase; flavonoids, short dehydrogenase reductase, NADPH, dihydroquercetin, rossmann fold, oxidoreductase; HET: NAP DQH; 1.81A {Vitis vinifera} PDB: 2iod_A* 2nnl_D* 3bxx_A* 3c1t_A*
Probab=55.55 E-value=10 Score=17.16 Aligned_cols=32 Identities=13% Similarity=0.129 Sum_probs=25.3
Q ss_pred EEECCCCCCHHHHHHHHHHHHCCCCEEEEEECCC
Q ss_conf 0007888748999999998524731598760457
Q gi|254780401|r 52 FVMGGTGKTPTALAIAKAVIDKNLKPGFLSRGYG 85 (338)
Q Consensus 52 itvGGtGKTP~v~~l~~~l~~~g~~~~ilsRGYg 85 (338)
+.+|||| =+=-+|++.|.++|++|..+.|.-.
T Consensus 9 lITGatG--fiG~~l~~~Ll~~g~~V~~~~r~~~ 40 (337)
T 2c29_D 9 CVTGASG--FIGSWLVMRLLERGYTVRATVRDPT 40 (337)
T ss_dssp EETTTTS--HHHHHHHHHHHHTTCEEEEEESCTT
T ss_pred EEECCCC--HHHHHHHHHHHHCCCEEEEEECCCC
T ss_conf 9988986--9999999999978398999978865
No 192
>2w00_A HSDR, R.ECOR124I; ATP-binding, DNA-binding, restriction system, plasmid, helicase, hydrolase, nucleotide-binding; HET: ATP; 2.6A {Escherichia coli} PDB: 2w74_B*
Probab=54.98 E-value=6.4 Score=18.55 Aligned_cols=23 Identities=26% Similarity=0.393 Sum_probs=18.8
Q ss_pred EECCCCCCHHHHHHHHHHHHCCC
Q ss_conf 00788874899999999852473
Q gi|254780401|r 53 VMGGTGKTPTALAIAKAVIDKNL 75 (338)
Q Consensus 53 tvGGtGKTP~v~~l~~~l~~~g~ 75 (338)
.+=|||||=+..++++.|.+.+.
T Consensus 307 haTGSGKTlT~~~~a~~l~~~~~ 329 (1038)
T 2w00_A 307 HTTGSGKTLTSFKAARLATELDF 329 (1038)
T ss_dssp ECTTSSHHHHHHHHHHHHTTCTT
T ss_pred ECCCCCCHHHHHHHHHHHHHCCC
T ss_conf 77898236999999999982877
No 193
>3c1o_A Eugenol synthase; phenylpropene, PIP reductase, short-chain dehydrogenase/reductase, oxidoreductase; HET: NAP; 1.80A {Clarkia breweri}
Probab=54.96 E-value=9.1 Score=17.46 Aligned_cols=31 Identities=19% Similarity=0.268 Sum_probs=25.1
Q ss_pred EEECCCCCCHHHHHHHHHHHHCCCCEEEEEECC
Q ss_conf 000788874899999999852473159876045
Q gi|254780401|r 52 FVMGGTGKTPTALAIAKAVIDKNLKPGFLSRGY 84 (338)
Q Consensus 52 itvGGtGKTP~v~~l~~~l~~~g~~~~ilsRGY 84 (338)
+.+||||.. =.++++.|.++|+++.+++|.-
T Consensus 8 LItGatG~i--G~~l~~~L~~~G~~V~~~~R~~ 38 (321)
T 3c1o_A 8 IIYGGTGYI--GKFMVRASLSFSHPTFIYARPL 38 (321)
T ss_dssp EEETTTSTT--HHHHHHHHHHTTCCEEEEECCC
T ss_pred EEECCCCHH--HHHHHHHHHHCCCCEEEEECCC
T ss_conf 998998289--9999999997899089998998
No 194
>1zgg_A Putative low molecular weight protein-tyrosine- phosphatase YWLE; alpha/beta, four-stranded parallel beta sheet, structural genomics; NMR {Bacillus subtilis}
Probab=54.88 E-value=9.4 Score=17.34 Aligned_cols=38 Identities=26% Similarity=0.379 Sum_probs=28.8
Q ss_pred CCEEEECCEEECCCCCCHHHHHHHHHHH-HCCCCEEEEEECCCC
Q ss_conf 9889982300078887489999999985-247315987604578
Q gi|254780401|r 44 IPVICVGGFVMGGTGKTPTALAIAKAVI-DKNLKPGFLSRGYGR 86 (338)
Q Consensus 44 ~pVI~VGNitvGGtGKTP~v~~l~~~l~-~~g~~~~ilsRGYg~ 86 (338)
|-.||.||+ .-.|++..+.+.+. +.|..+.+-|.|=+.
T Consensus 3 ILfVC~gN~-----cRSpmAE~i~~~~~~~~g~~~~v~SAG~~~ 41 (150)
T 1zgg_A 3 IIFVCTGNT-----CRSPMAEALFKSIAEREGLNVNVRSAGVFA 41 (150)
T ss_dssp EEEECTTST-----TTHHHHHHHHHHHHHHHTCCCEEEEEBTTC
T ss_pred EEEECCCCH-----HHHHHHHHHHHHHHHHCCCCEEEEECCCCC
T ss_conf 999879954-----899999999999999769972787544202
No 195
>3tmk_A Thymidylate kinase; phosphotransferase; HET: T5A; 2.00A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 2tmk_A* 1tmk_A*
Probab=54.88 E-value=4 Score=20.00 Aligned_cols=20 Identities=25% Similarity=0.207 Sum_probs=17.5
Q ss_pred CCCCCCHHHHHHHHHHHHCC
Q ss_conf 78887489999999985247
Q gi|254780401|r 55 GGTGKTPTALAIAKAVIDKN 74 (338)
Q Consensus 55 GGtGKTP~v~~l~~~l~~~g 74 (338)
-|+|||-.+..|++.|+..+
T Consensus 14 dGsGKST~~~~L~~~L~~~~ 33 (216)
T 3tmk_A 14 DRTGKTTQCNILYKKLQPNC 33 (216)
T ss_dssp SSSSHHHHHHHHHHHHCSSE
T ss_pred CCCCHHHHHHHHHHHHHCCC
T ss_conf 88849999999999997198
No 196
>3oh8_A Nucleoside-diphosphate sugar epimerase (SULA FAMI; DUF1731_C, northeast structural genomics consortium, NESG, C PSI-2; 2.00A {Corynebacterium glutamicum}
Probab=54.87 E-value=10 Score=17.09 Aligned_cols=30 Identities=17% Similarity=0.122 Sum_probs=24.2
Q ss_pred EECCCCCCHHHHHHHHHHHHCCCCEEEEEECC
Q ss_conf 00788874899999999852473159876045
Q gi|254780401|r 53 VMGGTGKTPTALAIAKAVIDKNLKPGFLSRGY 84 (338)
Q Consensus 53 tvGGtGKTP~v~~l~~~l~~~g~~~~ilsRGY 84 (338)
.+||||- +-.+|++.|.++|++|..++|.-
T Consensus 152 ITGatGf--IG~~Lv~~L~~~Gh~V~~l~R~~ 181 (516)
T 3oh8_A 152 ITGSRGL--VGRALTAQLQTGGHEVIQLVRKE 181 (516)
T ss_dssp EESTTSH--HHHHHHHHHHHTTCEEEEEESSS
T ss_pred EECCCCH--HHHHHHHHHHHCCCEEEEEECCC
T ss_conf 9898758--99999999997879899997886
No 197
>2v1u_A Cell division control protein 6 homolog; DNA replication, nucleotide-binding, replication, archaea; HET: ADP; 3.10A {Aeropyrum pernix}
Probab=54.34 E-value=4.6 Score=19.54 Aligned_cols=25 Identities=28% Similarity=0.369 Sum_probs=19.4
Q ss_pred EEEECCEEECCCCCCHHHHHHHHHHHHC
Q ss_conf 8998230007888748999999998524
Q gi|254780401|r 46 VICVGGFVMGGTGKTPTALAIAKAVIDK 73 (338)
Q Consensus 46 VI~VGNitvGGtGKTP~v~~l~~~l~~~ 73 (338)
++.+|. .|||||-++.++++.+...
T Consensus 47 lli~Gp---pGtGKT~l~~~l~~~l~~~ 71 (387)
T 2v1u_A 47 ALLYGL---TGTGKTAVARLVLRRLEAR 71 (387)
T ss_dssp EEECBC---TTSSHHHHHHHHHHHHHHH
T ss_pred EEEECC---CCCCHHHHHHHHHHHHHHH
T ss_conf 699879---9880999999999997654
No 198
>1uj2_A Uridine-cytidine kinase 2; alpha/beta mononucleotide-binding HOLD, transferase; HET: C5P ADP; 1.80A {Homo sapiens} SCOP: c.37.1.6 PDB: 1uei_A* 1uej_A* 1udw_A 1ufq_A* 1xrj_A*
Probab=54.07 E-value=7.1 Score=18.20 Aligned_cols=38 Identities=24% Similarity=0.274 Sum_probs=26.3
Q ss_pred CCCE-EEECCEEECCCCCCHHHHHHHHHHHHCC-----CCEEEEEE
Q ss_conf 8988-9982300078887489999999985247-----31598760
Q gi|254780401|r 43 PIPV-ICVGGFVMGGTGKTPTALAIAKAVIDKN-----LKPGFLSR 82 (338)
Q Consensus 43 ~~pV-I~VGNitvGGtGKTP~v~~l~~~l~~~g-----~~~~ilsR 82 (338)
+-|+ |.|.- -.|+|||-++-.|++.|...+ .++.+|+-
T Consensus 20 ~~P~IIgItG--~~gSGKSTla~~L~~~l~~~~~~~~~~~v~vi~~ 63 (252)
T 1uj2_A 20 GEPFLIGVSG--GTASGKSSVCAKIVQLLGQNEVDYRQKQVVILSQ 63 (252)
T ss_dssp -CCEEEEEEC--STTSSHHHHHHHHHHHTTGGGSCGGGCSEEEEEG
T ss_pred CCEEEEEEEC--CCCCCHHHHHHHHHHHHCCCCCCCCCCCEEEEEC
T ss_conf 9918999889--8988599999999999661234557884599935
No 199
>2c20_A UDP-glucose 4-epimerase; carbohydrate metabolism, galactose metabolism, isomerase, NAD, spine; HET: NAD; 2.7A {Bacillus anthracis}
Probab=53.92 E-value=11 Score=16.98 Aligned_cols=31 Identities=19% Similarity=0.296 Sum_probs=24.9
Q ss_pred EEECCCCCCHHHHHHHHHHHHCCCCEEEEEECC
Q ss_conf 000788874899999999852473159876045
Q gi|254780401|r 52 FVMGGTGKTPTALAIAKAVIDKNLKPGFLSRGY 84 (338)
Q Consensus 52 itvGGtGKTP~v~~l~~~l~~~g~~~~ilsRGY 84 (338)
|.+|||| -+--+|++.|.++|++|..+.|..
T Consensus 5 LItGg~G--fIG~~l~~~L~~~g~~V~~~d~~~ 35 (330)
T 2c20_A 5 LICGGAG--YIGSHAVKKLVDEGLSVVVVDNLQ 35 (330)
T ss_dssp EEETTTS--HHHHHHHHHHHHTTCEEEEEECCS
T ss_pred EECCCCC--HHHHHHHHHHHHCCCEEEEEECCC
T ss_conf 9887898--899999999997839899997888
No 200
>3hv2_A Response regulator/HD domain protein; PSI-2, NYSGXRC, structural genomics, protein structure initiative; 1.50A {Pseudomonas fluorescens pf-5}
Probab=53.89 E-value=11 Score=16.98 Aligned_cols=26 Identities=23% Similarity=0.335 Sum_probs=13.9
Q ss_pred CCCCCCCHHHHHHHHCCCCCCEEEEC
Q ss_conf 63465201225664102457479971
Q gi|254780401|r 116 VTIVTSDRKIGVQMLLQEGVDIIIMD 141 (338)
Q Consensus 116 pv~V~~~R~~~~~~~~~~~~diiIlD 141 (338)
.|.++.+-.+|.+.+.+..+|+||+|
T Consensus 40 ~v~~a~~~~eAl~~l~~~~~dlvi~D 65 (153)
T 3hv2_A 40 TLHFARDATQALQLLASREVDLVISA 65 (153)
T ss_dssp EEEEESSHHHHHHHHHHSCCSEEEEE
T ss_pred EEEEECCHHHHHHHHHHCCCCEEEEE
T ss_conf 99998999999999872799999983
No 201
>1fnn_A CDC6P, cell division control protein 6; ORC1, AAA protein, DNA replication initation factor, cell cycle control factor; HET: ADP; 2.00A {Pyrobaculum aerophilum} SCOP: a.4.5.11 c.37.1.20
Probab=53.80 E-value=11 Score=16.97 Aligned_cols=29 Identities=31% Similarity=0.216 Sum_probs=22.5
Q ss_pred CCCCEEEECCEEECCCCCCHHHHHHHHHHHHC
Q ss_conf 88988998230007888748999999998524
Q gi|254780401|r 42 APIPVICVGGFVMGGTGKTPTALAIAKAVIDK 73 (338)
Q Consensus 42 ~~~pVI~VGNitvGGtGKTP~v~~l~~~l~~~ 73 (338)
.|-.++.+|. -|||||-++..+++.+...
T Consensus 43 ~~~~~li~Gp---pGtGKT~~ar~la~~l~~~ 71 (389)
T 1fnn_A 43 HYPRATLLGR---PGTGKTVTLRKLWELYKDK 71 (389)
T ss_dssp SCCEEEEECC---TTSSHHHHHHHHHHHHTTS
T ss_pred CCCCEEEECC---CCCCHHHHHHHHHHHHHCC
T ss_conf 8881799889---9996999999999985312
No 202
>2p4h_X Vestitone reductase; NADPH-dependent reductase, isoflavonoid, plant protein; 1.40A {Medicago sativa}
Probab=53.38 E-value=10 Score=17.10 Aligned_cols=31 Identities=26% Similarity=0.284 Sum_probs=25.2
Q ss_pred EEECCCCCCHHHHHHHHHHHHCCCCEEEEEECC
Q ss_conf 000788874899999999852473159876045
Q gi|254780401|r 52 FVMGGTGKTPTALAIAKAVIDKNLKPGFLSRGY 84 (338)
Q Consensus 52 itvGGtGKTP~v~~l~~~l~~~g~~~~ilsRGY 84 (338)
+.+||||= +=.+|++.|.++|++|.++.|.=
T Consensus 5 LVTG~tGf--IG~~l~~~Ll~~g~~V~~~~r~~ 35 (322)
T 2p4h_X 5 CVTGGTGF--LGSWIIKSLLENGYSVNTTIRAD 35 (322)
T ss_dssp EEESTTSH--HHHHHHHHHHHTTCEEEEECCCC
T ss_pred EEECCCCH--HHHHHHHHHHHCCCEEEEEECCC
T ss_conf 99899878--99999999997859899998789
No 203
>2jeo_A Uridine-cytidine kinase 1; UCK, transferase, ATP-binding, nucleoside kinase, nucleotide-binding; 2.50A {Homo sapiens} PDB: 2uvq_A*
Probab=53.09 E-value=8.1 Score=17.81 Aligned_cols=30 Identities=20% Similarity=0.259 Sum_probs=21.9
Q ss_pred CCCCCCHHHHHHHHHHHH-----CCCCEEEEEE-CC
Q ss_conf 788874899999999852-----4731598760-45
Q gi|254780401|r 55 GGTGKTPTALAIAKAVID-----KNLKPGFLSR-GY 84 (338)
Q Consensus 55 GGtGKTP~v~~l~~~l~~-----~g~~~~ilsR-GY 84 (338)
-|+|||-++-.|++.|.. .+..+.+||- +|
T Consensus 34 ~gSGKSTla~~L~~~l~~~~i~~~~~~~~ii~~D~y 69 (245)
T 2jeo_A 34 TASGKSTVCEKIMELLGQNEVEQRQRKVVILSQDRF 69 (245)
T ss_dssp TTSSHHHHHHHHHHHHTGGGSCGGGCSEEEEEGGGG
T ss_pred CCCCHHHHHHHHHHHHCCCCCCCCCCCEEEEECCCC
T ss_conf 988899999999998561546757771699817865
No 204
>2zcu_A Uncharacterized oxidoreductase YTFG; alpha-beta sandwich; 1.80A {Escherichia coli} PDB: 2zcv_A*
Probab=52.91 E-value=11 Score=16.87 Aligned_cols=30 Identities=13% Similarity=0.209 Sum_probs=25.4
Q ss_pred EEECCCCCCHHHHHHHHHHHHC--CCCEEEEEEC
Q ss_conf 0007888748999999998524--7315987604
Q gi|254780401|r 52 FVMGGTGKTPTALAIAKAVIDK--NLKPGFLSRG 83 (338)
Q Consensus 52 itvGGtGKTP~v~~l~~~l~~~--g~~~~ilsRG 83 (338)
+.+|||| .+=.++++.|.++ |+++..++|.
T Consensus 3 lVtGaTG--~iG~~vv~~L~~~~~g~~V~~~~R~ 34 (286)
T 2zcu_A 3 AITGATG--QLGHYVIESLMKTVPASQIVAIVRN 34 (286)
T ss_dssp EEESTTS--HHHHHHHHHHTTTSCGGGEEEEESC
T ss_pred EEECCCC--HHHHHHHHHHHHCCCCCEEEEEECC
T ss_conf 9999885--7999999999844999879999789
No 205
>1q57_A DNA primase/helicase; dntpase, DNA replication, transferase; HET: DNA; 3.45A {Enterobacteria phage T7} SCOP: c.37.1.11 e.13.1.2
Probab=52.53 E-value=6.1 Score=18.70 Aligned_cols=13 Identities=23% Similarity=0.350 Sum_probs=5.7
Q ss_pred HHHHHHHHHCCCE
Q ss_conf 9999975647987
Q gi|254780401|r 266 AYLLDQAQQKGLI 278 (338)
Q Consensus 266 ~~i~~~a~~~~~~ 278 (338)
..+.+.|++.+..
T Consensus 384 ~~Lk~lA~~~~v~ 396 (503)
T 1q57_A 384 TKLKGFAKSTGVV 396 (503)
T ss_dssp HHHHHHHHHHTCE
T ss_pred HHHHHHHHHHCCE
T ss_conf 9999999983974
No 206
>2wm3_A NMRA-like family domain containing protein 1; unknown function; HET: NAP NFL; 1.85A {Homo sapiens} PDB: 2wmd_A* 2exx_A* 3dxf_A 3e5m_A
Probab=52.32 E-value=11 Score=16.81 Aligned_cols=30 Identities=27% Similarity=0.580 Sum_probs=23.5
Q ss_pred EEECCCCCCHHHHHHHHHHHHCC-CCEEEEEEC
Q ss_conf 00078887489999999985247-315987604
Q gi|254780401|r 52 FVMGGTGKTPTALAIAKAVIDKN-LKPGFLSRG 83 (338)
Q Consensus 52 itvGGtGKTP~v~~l~~~l~~~g-~~~~ilsRG 83 (338)
+.+||||-. =-.|++.|.++| ++|.+++|.
T Consensus 9 LVtGatG~i--G~~lv~~Ll~~g~~~V~~l~R~ 39 (299)
T 2wm3_A 9 VVFGGTGAQ--GGSVARTLLEDGTFKVRVVTRN 39 (299)
T ss_dssp EEETTTSHH--HHHHHHHHHHHCSSEEEEEESC
T ss_pred EEECCCCHH--HHHHHHHHHHCCCCEEEEEECC
T ss_conf 998998889--9999999995899719999868
No 207
>3cf0_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48, acetylation, ATP-binding, cytoplasm, lipid-binding, nucleotide-binding; HET: ADP; 3.00A {Mus musculus}
Probab=52.31 E-value=6.6 Score=18.43 Aligned_cols=32 Identities=31% Similarity=0.199 Sum_probs=21.8
Q ss_pred CCCEEEECCEEECCCCCCHHHHHHHHHHHHCCCCEEEE
Q ss_conf 89889982300078887489999999985247315987
Q gi|254780401|r 43 PIPVICVGGFVMGGTGKTPTALAIAKAVIDKNLKPGFL 80 (338)
Q Consensus 43 ~~pVI~VGNitvGGtGKTP~v~~l~~~l~~~g~~~~il 80 (338)
+.-|+-.|.- |||||-++.++|+.+ |.....+
T Consensus 49 ~~gvLl~Gpp---GtGKT~la~aia~~~---~~~~~~i 80 (301)
T 3cf0_A 49 SKGVLFYGPP---GCGKTLLAKAIANEC---QANFISI 80 (301)
T ss_dssp CSEEEEECSS---SSSHHHHHHHHHHHT---TCEEEEE
T ss_pred CCEEEEECCC---CCCHHHHHHHHHHHH---CCCEEEE
T ss_conf 8637887999---998899999999994---9976998
No 208
>3exa_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; 2.30A {Bacillus halodurans} PDB: 2qgn_A
Probab=52.22 E-value=7.5 Score=18.06 Aligned_cols=31 Identities=26% Similarity=0.324 Sum_probs=21.5
Q ss_pred CCEEEECCEEECCCCCCHHHHHHHHHHHHCCCCEEEEE
Q ss_conf 98899823000788874899999999852473159876
Q gi|254780401|r 44 IPVICVGGFVMGGTGKTPTALAIAKAVIDKNLKPGFLS 81 (338)
Q Consensus 44 ~pVI~VGNitvGGtGKTP~v~~l~~~l~~~g~~~~ils 81 (338)
-+||+|.-- -|||||-+++.||+.+. .-|||
T Consensus 3 ~kii~I~Gp--TasGKS~la~~LA~~~~-----~eIIs 33 (322)
T 3exa_A 3 EKLVAIVGP--TAVGKTKTSVMLAKRLN-----GEVIS 33 (322)
T ss_dssp CEEEEEECC--TTSCHHHHHHHHHHTTT-----EEEEE
T ss_pred CCEEEEECC--CCCCHHHHHHHHHHHCC-----CEEEE
T ss_conf 867999898--72169999999999879-----96996
No 209
>2jjm_A Glycosyl transferase, group 1 family protein; anthrax, nucleotide, carbohydrate; 3.10A {Bacillus anthracis}
Probab=51.86 E-value=5.8 Score=18.83 Aligned_cols=32 Identities=19% Similarity=0.424 Sum_probs=26.2
Q ss_pred EECCCCCCHHHHHHHHHHHHCCCCEEEEEECCCC
Q ss_conf 0078887489999999985247315987604578
Q gi|254780401|r 53 VMGGTGKTPTALAIAKAVIDKNLKPGFLSRGYGR 86 (338)
Q Consensus 53 tvGGtGKTP~v~~l~~~l~~~g~~~~ilsRGYg~ 86 (338)
+.||++ -.+..|++.|.++|+.|.+++.++..
T Consensus 25 ~~GG~~--~~~~~La~~L~~~Gh~V~vit~~~~~ 56 (394)
T 2jjm_A 25 SVGGSG--VVGTELGKQLAERGHEIHFITSGLPF 56 (394)
T ss_dssp --CHHH--HHHHHHHHHHHHTTCEEEEECSSCC-
T ss_pred CCCCHH--HHHHHHHHHHHHCCCEEEEEECCCCC
T ss_conf 999599--99999999999779989999479986
No 210
>2x4g_A Nucleoside-diphosphate-sugar epimerase; isomerase; 2.65A {Pseudomonas aeruginosa}
Probab=51.45 E-value=12 Score=16.72 Aligned_cols=31 Identities=23% Similarity=0.219 Sum_probs=26.2
Q ss_pred EEECCCCCCHHHHHHHHHHHHCCCCEEEEEECC
Q ss_conf 000788874899999999852473159876045
Q gi|254780401|r 52 FVMGGTGKTPTALAIAKAVIDKNLKPGFLSRGY 84 (338)
Q Consensus 52 itvGGtGKTP~v~~l~~~l~~~g~~~~ilsRGY 84 (338)
+.+|||| -+=.+|++.|.++|++|..++|.-
T Consensus 17 lVtGatG--~vG~~l~~~L~~~g~~V~~l~R~~ 47 (342)
T 2x4g_A 17 AVLGATG--LLGHHAARAIRAAGHDLVLIHRPS 47 (342)
T ss_dssp EEESTTS--HHHHHHHHHHHHTTCEEEEEECTT
T ss_pred EEECCCC--HHHHHHHHHHHHCCCEEEEEECCC
T ss_conf 9989998--899999999997869899997881
No 211
>1hqc_A RUVB; extended AAA-ATPase domain, complex with nucleotide, hydrolase; HET: ADE; 3.20A {Thermus thermophilus} SCOP: a.4.5.11 c.37.1.20 PDB: 1ixs_B* 1ixr_C*
Probab=51.15 E-value=12 Score=16.68 Aligned_cols=32 Identities=28% Similarity=0.307 Sum_probs=23.5
Q ss_pred CCEEEECCEEECCCCCCHHHHHHHHHHHHCCCCEEEEE
Q ss_conf 98899823000788874899999999852473159876
Q gi|254780401|r 44 IPVICVGGFVMGGTGKTPTALAIAKAVIDKNLKPGFLS 81 (338)
Q Consensus 44 ~pVI~VGNitvGGtGKTP~v~~l~~~l~~~g~~~~ils 81 (338)
-.++-.|. -|||||-++..+|+.+ |.....+|
T Consensus 39 ~~iLl~GP---pG~GKTtlA~~iA~~l---~~~~~~~~ 70 (324)
T 1hqc_A 39 EHLLLFGP---PGLGKTTLAHVIAHEL---GVNLRVTS 70 (324)
T ss_dssp CCCEEECC---TTCCCHHHHHHHHHHH---TCCEEEEC
T ss_pred CEEEEECC---CCCCHHHHHHHHHHHH---CCCCCCCC
T ss_conf 85999897---9951999999999986---88964456
No 212
>3do6_A Formate--tetrahydrofolate ligase; TM1766, putative formyltetrahydrofolate synthetase, structural genomics; HET: MSE; 1.85A {Thermotoga maritima}
Probab=51.12 E-value=11 Score=16.90 Aligned_cols=39 Identities=23% Similarity=0.182 Sum_probs=32.6
Q ss_pred CCEEEECC--EEECCCCCCHHHHHHHHHHHHCCCCEEEEEE
Q ss_conf 98899823--0007888748999999998524731598760
Q gi|254780401|r 44 IPVICVGG--FVMGGTGKTPTALAIAKAVIDKNLKPGFLSR 82 (338)
Q Consensus 44 ~pVI~VGN--itvGGtGKTP~v~~l~~~l~~~g~~~~ilsR 82 (338)
-..|.|-- -|--|-|||-+++-|++-|.+.|++..+-.|
T Consensus 43 gklilVTaitPTp~GEGKtTttiGL~~aL~~~gk~~~~~lR 83 (543)
T 3do6_A 43 GKLILVTAVTPTPAGEGKTTTSIGLSMSLNRIGKKSIVTLR 83 (543)
T ss_dssp CEEEEEEESSCCTTCCCHHHHHHHHHHHHHHTTCCEEEEEC
T ss_pred CEEEEEEECCCCCCCCCCCCCHHHHHHHHHHHCCCEEEEEE
T ss_conf 63999973588888888520089899998752874379973
No 213
>2a5y_B CED-4; apoptosis; HET: ATP; 2.60A {Caenorhabditis elegans} SCOP: a.4.5.80 a.77.1.3 c.37.1.20 PDB: 3lqq_A* 3lqr_A*
Probab=51.11 E-value=4.7 Score=19.51 Aligned_cols=47 Identities=9% Similarity=0.160 Sum_probs=25.0
Q ss_pred CCCCCEEEECCCCCCCC----CCCEEEEEEECCCCCCC-----CCCCCCCHHHHHC
Q ss_conf 24574799718322344----12306999961843356-----6553761365210
Q gi|254780401|r 132 QEGVDIIIMDDGFHSAD----LQADFSLIVVNSHRGLG-----NGLVFPAGPLRVP 178 (338)
Q Consensus 132 ~~~~diiIlDDGfQh~~----l~rdl~Ivl~d~~~~~g-----n~~llPaGpLREp 178 (338)
...--++|+||--+-.. ....-.|+++.-.+... ....++..+|-+.
T Consensus 241 ~~k~~LlVlDDvw~~~~~~~~~~~gs~ilvTTR~~~v~~~~~~~~~~~~l~~L~~~ 296 (549)
T 2a5y_B 241 DRPNTLFVFDDVVQEETIRWAQELRLRCLVTTRDVEISNAASQTCEFIEVTSLEID 296 (549)
T ss_dssp TSTTEEEEEEEECCHHHHHHHHHTTCEEEEEESBGGGGGGCCSCEEEEECCCCCHH
T ss_pred CCCCCEEEHHHHHHHHHCCCCCCCCCEEEEEECCHHHHHHCCCCCEEEECCCCCHH
T ss_conf 55761301664421432142246887699981554889855688537768999999
No 214
>1w5s_A ORC2; CDC6, DNA replication initiation, DNA binding protein, AAA+ ATPase; HET: ADP; 2.4A {Aeropyrum pernix} SCOP: a.4.5.11 c.37.1.20 PDB: 1w5t_A*
Probab=50.87 E-value=12 Score=16.65 Aligned_cols=19 Identities=37% Similarity=0.314 Sum_probs=17.0
Q ss_pred CCCCCCHHHHHHHHHHHHC
Q ss_conf 7888748999999998524
Q gi|254780401|r 55 GGTGKTPTALAIAKAVIDK 73 (338)
Q Consensus 55 GGtGKTP~v~~l~~~l~~~ 73 (338)
.|||||-++.++++.|++.
T Consensus 61 pGTGKT~~~~~v~~~l~~~ 79 (412)
T 1w5s_A 61 VGIGKTTLAKFTVKRVSEA 79 (412)
T ss_dssp CSSSHHHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHHH
T ss_conf 9988999999999999864
No 215
>2eyu_A Twitching motility protein PILT; pilus retraction motor, C-terminal domain PILT, protein transport; 1.87A {Aquifex aeolicus}
Probab=50.85 E-value=12 Score=16.65 Aligned_cols=20 Identities=20% Similarity=0.316 Sum_probs=16.1
Q ss_pred ECCCCCCHHHHHHHHHHHHC
Q ss_conf 07888748999999998524
Q gi|254780401|r 54 MGGTGKTPTALAIAKAVIDK 73 (338)
Q Consensus 54 vGGtGKTP~v~~l~~~l~~~ 73 (338)
.-|+|||-+.-++.+++.+.
T Consensus 33 ~tGSGKTT~l~all~~i~~~ 52 (261)
T 2eyu_A 33 PTGSGKSTTIASMIDYINQT 52 (261)
T ss_dssp STTCSHHHHHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHCCCC
T ss_conf 99963999999999842643
No 216
>2ehv_A Hypothetical protein PH0186; KAIC, RECA ATPase, unknown function; HET: ADP; 2.07A {Pyrococcus horikoshii} PDB: 2zts_A*
Probab=50.80 E-value=9.4 Score=17.36 Aligned_cols=27 Identities=26% Similarity=0.226 Sum_probs=20.5
Q ss_pred CCCCCCHHHHHHHH-HHHHCCCCEEEEE
Q ss_conf 78887489999999-9852473159876
Q gi|254780401|r 55 GGTGKTPTALAIAK-AVIDKNLKPGFLS 81 (338)
Q Consensus 55 GGtGKTP~v~~l~~-~l~~~g~~~~ils 81 (338)
-|+|||-++..++. .+.+.+.++.++|
T Consensus 39 ~G~GKT~l~~~~~~~~~~~~~~~v~~~s 66 (251)
T 2ehv_A 39 TGTGKTTFAAQFIYKGAEEYGEPGVFVT 66 (251)
T ss_dssp TTSSHHHHHHHHHHHHHHHHCCCEEEEE
T ss_pred CCCCHHHHHHHHHHHHHHHCCCCEEEEC
T ss_conf 9999899999999999996499712424
No 217
>1lu9_A Methylene tetrahydromethanopterin dehydrogenase; alpha/beta twisted open sheet structure, oxidoreductase; 1.90A {Methylobacterium extorquens AM1} SCOP: c.2.1.7 c.58.1.4 PDB: 1lua_A*
Probab=50.63 E-value=12 Score=16.63 Aligned_cols=22 Identities=14% Similarity=0.191 Sum_probs=9.4
Q ss_pred HHHHHHHHHHHHCCCCEEEEEE
Q ss_conf 8999999998524731598760
Q gi|254780401|r 61 PTALAIAKAVIDKNLKPGFLSR 82 (338)
Q Consensus 61 P~v~~l~~~l~~~g~~~~ilsR 82 (338)
++=..+++.|.+.|.++.+.+|
T Consensus 130 giG~a~A~~la~~Ga~V~i~~R 151 (287)
T 1lu9_A 130 PVGMRSAALLAGEGAEVVLCGR 151 (287)
T ss_dssp HHHHHHHHHHHHTTCEEEEEES
T ss_pred HHHHHHHHHHHHCCCEEEEEEC
T ss_conf 9999999999986998999959
No 218
>3cvj_A Putative phosphoheptose isomerase; NP_244191.1, structural genomics, joint center for structural genomics, JCSG; HET: MSE; 2.00A {Bacillus halodurans c-125}
Probab=50.51 E-value=12 Score=16.62 Aligned_cols=51 Identities=14% Similarity=0.113 Sum_probs=26.0
Q ss_pred HHHHHHHCCCCCCEEEECCCCCCC-----------CCCCEEEEEEECCCCCCCC------CCCCCCHHHH
Q ss_conf 225664102457479971832234-----------4123069999618433566------5537613652
Q gi|254780401|r 124 KIGVQMLLQEGVDIIIMDDGFHSA-----------DLQADFSLIVVNSHRGLGN------GLVFPAGPLR 176 (338)
Q Consensus 124 ~~~~~~~~~~~~diiIlDDGfQh~-----------~l~rdl~Ivl~d~~~~~gn------~~llPaGpLR 176 (338)
.++++.+.+.++.+|.+=. .+|- .|..-.|+++-+ ..|.|. +.-.+.||..
T Consensus 125 i~a~~~AK~~G~~vIaIT~-~~~S~~~~~~h~~g~~L~~~ad~~id~-~~~~gda~~~~~~~~~~~~~ts 192 (243)
T 3cvj_A 125 VEMAIESRNIGAKVIAMTS-MKHSQKVTSRHKSGKKLYEYADVVLDN-GAPVGDAGFQIANSEIYSGATS 192 (243)
T ss_dssp HHHHHHHHHHTCEEEEEEC-HHHHHHSCCCSTTSCCGGGGCSEEEEC-CCCTTSCCEECSSSSCEECCCH
T ss_pred HHHHHHHHHCCCEEEEEEC-CCCCCCCCCCCCCCCCHHHHCCCEEEC-CCCCCCCEEECCCCCCCCCCHH
T ss_conf 9999999987994999808-876755432344446256736766766-7776543011146776767588
No 219
>2r62_A Cell division protease FTSH homolog; ATPase domain, ATP-binding, cell cycle, hydrolase, membrane metal-binding, metalloprotease; 3.30A {Helicobacter pylori} PDB: 2r65_A*
Probab=50.45 E-value=5.4 Score=19.06 Aligned_cols=23 Identities=48% Similarity=0.498 Sum_probs=17.2
Q ss_pred EEEECCEEECCCCCCHHHHHHHHHHH
Q ss_conf 89982300078887489999999985
Q gi|254780401|r 46 VICVGGFVMGGTGKTPTALAIAKAVI 71 (338)
Q Consensus 46 VI~VGNitvGGtGKTP~v~~l~~~l~ 71 (338)
|+-.|. =|||||-++.++|+.+.
T Consensus 47 vLl~Gp---pGtGKT~la~aia~e~~ 69 (268)
T 2r62_A 47 VLLVGP---PGTGKTLLAKAVAGEAH 69 (268)
T ss_dssp CCCBCS---SCSSHHHHHHHHHHHHT
T ss_pred EEEECC---CCCCCHHHHHHHHHHCC
T ss_conf 687689---99980079999999749
No 220
>1u2p_A Ptpase, low molecular weight protein-tyrosine- phosphatase; hydrolase; 1.90A {Mycobacterium tuberculosis} PDB: 1u2q_A
Probab=50.30 E-value=11 Score=16.91 Aligned_cols=38 Identities=18% Similarity=0.346 Sum_probs=27.8
Q ss_pred CCCEEEECCEEECCCCCCHHHHHHHHHHHHC---CCCEEEEEECCC
Q ss_conf 8988998230007888748999999998524---731598760457
Q gi|254780401|r 43 PIPVICVGGFVMGGTGKTPTALAIAKAVIDK---NLKPGFLSRGYG 85 (338)
Q Consensus 43 ~~pVI~VGNitvGGtGKTP~v~~l~~~l~~~---g~~~~ilsRGYg 85 (338)
.|-.||.||+ ...||+.++.+.+-+. +-.+.|-|.|=.
T Consensus 6 kvLFVC~gN~-----cRSpmAEail~~~~~~~~~~~~~~v~SAGt~ 46 (163)
T 1u2p_A 6 HVTFVCTGNI-----CRSPMAEKMFAQQLRHRGLGDAVRVTSAGTG 46 (163)
T ss_dssp EEEEEESSSS-----SHHHHHHHHHHHHHHHTTCTTTEEEEEEESS
T ss_pred EEEEECCCCH-----HHHHHHHHHHHHHHHHCCCCCCEEEECCCCC
T ss_conf 7989759968-----7999999999999885788764247436666
No 221
>1jr3_A DNA polymerase III subunit gamma; processivity, processivity clamp, clamp loader, AAA+ ATPase, transferase; HET: DNA; 2.70A {Escherichia coli} SCOP: a.80.1.1 c.37.1.20 PDB: 1xxh_B* 3glh_B* 3glf_B* 3gli_B* 3glg_B* 1xxi_B*
Probab=50.22 E-value=5.5 Score=19.02 Aligned_cols=30 Identities=27% Similarity=0.277 Sum_probs=20.7
Q ss_pred CCCCCEEEECCEEECCCCCCHHHHHHHHHHHHC
Q ss_conf 388988998230007888748999999998524
Q gi|254780401|r 41 HAPIPVICVGGFVMGGTGKTPTALAIAKAVIDK 73 (338)
Q Consensus 41 ~~~~pVI~VGNitvGGtGKTP~v~~l~~~l~~~ 73 (338)
+.|-..+-.|- -|+|||.++.++|+.|.-.
T Consensus 36 ~~~h~~L~~Gp---~G~GKt~~a~~la~~l~~~ 65 (373)
T 1jr3_A 36 RIHHAYLFSGT---RGVGKTSIARLLAKGLNCE 65 (373)
T ss_dssp CCCSEEEEESC---TTSSHHHHHHHHHHHHSCT
T ss_pred CCCCEEEEECC---CCCCHHHHHHHHHHHHCCC
T ss_conf 97714765799---9988999999999986787
No 222
>3d8b_A Fidgetin-like protein 1; AAA+, ATPase, ADP, SGC, structural genomics consortium, alternative splicing, ATP-binding, hydrolase, magnesium; HET: ADP; 2.00A {Homo sapiens}
Probab=50.00 E-value=4.8 Score=19.42 Aligned_cols=30 Identities=30% Similarity=0.234 Sum_probs=20.4
Q ss_pred EEEECCEEECCCCCCHHHHHHHHHHHHCCCCEEEEE
Q ss_conf 899823000788874899999999852473159876
Q gi|254780401|r 46 VICVGGFVMGGTGKTPTALAIAKAVIDKNLKPGFLS 81 (338)
Q Consensus 46 VI~VGNitvGGtGKTP~v~~l~~~l~~~g~~~~ils 81 (338)
|+-.|.= |||||-++.++|+.+ |.....++
T Consensus 120 vLL~GPP---GtGKT~lakaiA~e~---g~~~~~i~ 149 (357)
T 3d8b_A 120 ILLFGPP---GTGKTLIGKCIASQS---GATFFSIS 149 (357)
T ss_dssp EEEESST---TSSHHHHHHHHHHHT---TCEEEEEE
T ss_pred EEEECCC---CCCHHHHHHHHHHCC---CCCEEEEE
T ss_conf 8877979---987999999998422---89859940
No 223
>1hdo_A Biliverdin IX beta reductase; foetal metabolism, HAEM degradation, flavin reductase, diaphorase, green HAEM binding protein; HET: NAP; 1.15A {Homo sapiens} SCOP: c.2.1.2 PDB: 1he2_A* 1he3_A* 1he4_A* 1he5_A*
Probab=49.91 E-value=12 Score=16.55 Aligned_cols=29 Identities=24% Similarity=0.437 Sum_probs=24.2
Q ss_pred EECCCCCCHHHHHHHHHHHHCCCCEEEEEEC
Q ss_conf 0078887489999999985247315987604
Q gi|254780401|r 53 VMGGTGKTPTALAIAKAVIDKNLKPGFLSRG 83 (338)
Q Consensus 53 tvGGtGKTP~v~~l~~~l~~~g~~~~ilsRG 83 (338)
.+||||.+ -..+++.|.++|+++..++|-
T Consensus 8 V~GatG~i--G~~l~~~ll~~g~~V~~~~R~ 36 (206)
T 1hdo_A 8 IFGATGQT--GLTTLAQAVQAGYEVTVLVRD 36 (206)
T ss_dssp EESTTSHH--HHHHHHHHHHTTCEEEEEESC
T ss_pred EECCCCHH--HHHHHHHHHHCCCEEEEEECC
T ss_conf 99998689--999999999786989999848
No 224
>3bs4_A Uncharacterized protein PH0321; structural genomics, unknown function, PSI-2, protein structure initiative; 1.60A {Pyrococcus horikoshii OT3}
Probab=49.87 E-value=9.1 Score=17.43 Aligned_cols=27 Identities=11% Similarity=0.118 Sum_probs=23.6
Q ss_pred CCCCCCHHHHHHHHHHHHCCCCEEEEE
Q ss_conf 788874899999999852473159876
Q gi|254780401|r 55 GGTGKTPTALAIAKAVIDKNLKPGFLS 81 (338)
Q Consensus 55 GGtGKTP~v~~l~~~l~~~g~~~~ils 81 (338)
-|||||=++..++....+.|.++.++|
T Consensus 30 ~gsgkt~l~~~f~~~~~~~g~~~~yis 56 (260)
T 3bs4_A 30 ASSRGKDILFYILSRKLKSDNLVGMFS 56 (260)
T ss_dssp GGGCHHHHHHHHHHHHHHTTCEEEEEE
T ss_pred CCCCHHHHHHHHHHHHHHCCCCEEEEE
T ss_conf 999989999999999987799579996
No 225
>2b69_A UDP-glucuronate decarboxylase 1; UDP-glucoronic acid decarboxylase, structural genomics, structural genomics consortium, SGC, lyase; HET: MSE NAD UDP; 1.21A {Homo sapiens} SCOP: c.2.1.2
Probab=49.85 E-value=12 Score=16.55 Aligned_cols=34 Identities=9% Similarity=0.218 Sum_probs=26.3
Q ss_pred EECCCCCCHHHHHHHHHHHHCCCCEEEEEECCCCCC
Q ss_conf 007888748999999998524731598760457877
Q gi|254780401|r 53 VMGGTGKTPTALAIAKAVIDKNLKPGFLSRGYGRKS 88 (338)
Q Consensus 53 tvGGtGKTP~v~~l~~~l~~~g~~~~ilsRGYg~~~ 88 (338)
.+|||| =+-.+|++.|.++|+.|..+.|.+.++.
T Consensus 32 ITGg~G--fIG~~lv~~L~~~g~~V~~~d~~~~~~~ 65 (343)
T 2b69_A 32 ITGGAG--FVGSHLTDKLMMDGHEVTVVDNFFTGRK 65 (343)
T ss_dssp EETTTS--HHHHHHHHHHHHTTCEEEEEECCSSCCG
T ss_pred EECCCC--HHHHHHHHHHHHCCCEEEEEECCCCCCH
T ss_conf 977880--8999999999978698999968877777
No 226
>3lrx_A Putative hydrogenase; alpha-beta protein, structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium; 2.60A {Pyrococcus furiosus}
Probab=49.65 E-value=6.9 Score=18.31 Aligned_cols=31 Identities=23% Similarity=0.097 Sum_probs=20.7
Q ss_pred CEEEECCEEECCCCCCHHHHHHHHHHHHCCCCEEEE
Q ss_conf 889982300078887489999999985247315987
Q gi|254780401|r 45 PVICVGGFVMGGTGKTPTALAIAKAVIDKNLKPGFL 80 (338)
Q Consensus 45 pVI~VGNitvGGtGKTP~v~~l~~~l~~~g~~~~il 80 (338)
+++.| +||||=||+.. +++.+.+.|....++
T Consensus 25 ~illI----aGG~GIaP~~s-il~~l~~~g~~~~~~ 55 (158)
T 3lrx_A 25 KILAI----GAYTGIVEVYP-IAKAWQEIGNDVTTL 55 (158)
T ss_dssp EEEEE----EETTHHHHHHH-HHHHHHHHTCEEEEE
T ss_pred EEEEE----ECCEEHHHHHH-HHHHHHHCCCCEEEE
T ss_conf 39999----44287688999-999999779926999
No 227
>3ko8_A NAD-dependent epimerase/dehydratase; isomerase, UDP-galactose 4-epimerase; HET: NAD; 1.80A {Pyrobaculum calidifontis} PDB: 3icp_A*
Probab=49.49 E-value=12 Score=16.51 Aligned_cols=31 Identities=13% Similarity=0.194 Sum_probs=24.2
Q ss_pred EEECCCCCCHHHHHHHHHHHHCCCCEEEEEECC
Q ss_conf 000788874899999999852473159876045
Q gi|254780401|r 52 FVMGGTGKTPTALAIAKAVIDKNLKPGFLSRGY 84 (338)
Q Consensus 52 itvGGtGKTP~v~~l~~~l~~~g~~~~ilsRGY 84 (338)
+.+|||| -+=.+|++.|.++|++|.+++|--
T Consensus 4 LItGatG--fiG~~l~~~L~~~g~~V~~~~~~~ 34 (312)
T 3ko8_A 4 VVTGGAG--FIGSHLVDKLVELGYEVVVVDNLS 34 (312)
T ss_dssp EEETTTS--HHHHHHHHHHHHTTCEEEEECCCS
T ss_pred EEECCCC--HHHHHHHHHHHHCCCEEEEEECCC
T ss_conf 9988886--899999999997869899997898
No 228
>2r2a_A Uncharacterized protein; zonular occludens toxin, structural genomics, APC84050.2, PSI-2, protein structure initiative; HET: MSE; 1.82A {Neisseria meningitidis MC58}
Probab=49.33 E-value=5.9 Score=18.79 Aligned_cols=19 Identities=21% Similarity=0.142 Sum_probs=15.8
Q ss_pred CCCCCCHHHHHHHHHHHHC
Q ss_conf 7888748999999998524
Q gi|254780401|r 55 GGTGKTPTALAIAKAVIDK 73 (338)
Q Consensus 55 GGtGKTP~v~~l~~~l~~~ 73 (338)
=|||||-++..+|+.+...
T Consensus 14 PGtGKT~~a~~la~~l~~~ 32 (199)
T 2r2a_A 14 PGSGKTLKMVSMMANDEMF 32 (199)
T ss_dssp TTSSHHHHHHHHHHHCGGG
T ss_pred CCCHHHHHHHHHHHHHCCC
T ss_conf 9970999999999996854
No 229
>1cqx_A Flavohemoprotein; globin fold, six-stranded antiparallel beta sheet, helix- flanked five-stranded parallel beta sheet; HET: HEM FAD DGG; 1.75A {Cupriavidus necator} SCOP: a.1.1.2 b.43.4.2 c.25.1.5
Probab=49.29 E-value=9.8 Score=17.22 Aligned_cols=22 Identities=9% Similarity=0.232 Sum_probs=12.9
Q ss_pred CCEEEEEE-CCCCHHHHHHHHHHH
Q ss_conf 86389874-155357899988740
Q gi|254780401|r 222 GKKVLAFS-GIADTEKFFTTVRQL 244 (338)
Q Consensus 222 ~k~v~afs-GIa~P~~F~~~L~~~ 244 (338)
+++++.++ |+|= ..|..+|+.+
T Consensus 266 ~~~vvliAgGtGI-aP~~s~l~~~ 288 (403)
T 1cqx_A 266 KTPIVLISGGVGL-TPMVSMLKVA 288 (403)
T ss_dssp CSCEEEEESSCCH-HHHHHHHHHH
T ss_pred CCEEEEEECCCCC-CCHHHHHHHH
T ss_conf 7679999747887-8089999999
No 230
>1vht_A Dephospho-COA kinase; structural genomics, transferase; HET: BA3; 1.59A {Escherichia coli} SCOP: c.37.1.1 PDB: 1vhl_A* 1viy_A 1t3h_A 1n3b_A
Probab=49.17 E-value=8.6 Score=17.62 Aligned_cols=25 Identities=32% Similarity=0.683 Sum_probs=16.8
Q ss_pred EE-EECCEEECCCCCCHHHHHHHHHHHHCCCCE
Q ss_conf 89-982300078887489999999985247315
Q gi|254780401|r 46 VI-CVGGFVMGGTGKTPTALAIAKAVIDKNLKP 77 (338)
Q Consensus 46 VI-~VGNitvGGtGKTP~v~~l~~~l~~~g~~~ 77 (338)
|| .+|.+ |+|||- ++++|++.|+.+
T Consensus 6 IIgItG~i---gSGKSt----va~~l~~~G~~v 31 (218)
T 1vht_A 6 IVALTGGI---GSGKST----VANAFADLGINV 31 (218)
T ss_dssp EEEEECCT---TSCHHH----HHHHHHHTTCEE
T ss_pred EEEEECCC---CCCHHH----HHHHHHHCCCCE
T ss_conf 99987988---787999----999999879919
No 231
>1sxj_E Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ ATPase, DNA polymerase; HET: ATG ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=49.10 E-value=4.6 Score=19.54 Aligned_cols=25 Identities=24% Similarity=0.527 Sum_probs=19.8
Q ss_pred EEEECCEEECCCCCCHHHHHHHHHHHHC
Q ss_conf 8998230007888748999999998524
Q gi|254780401|r 46 VICVGGFVMGGTGKTPTALAIAKAVIDK 73 (338)
Q Consensus 46 VI~VGNitvGGtGKTP~v~~l~~~l~~~ 73 (338)
++-.|. -|||||-++..+|+.+...
T Consensus 39 lLl~Gp---~G~GKTt~a~~la~~l~~~ 63 (354)
T 1sxj_E 39 LLLYGP---NGTGKKTRCMALLESIFGP 63 (354)
T ss_dssp EEEECS---TTSSHHHHHHTHHHHHSCT
T ss_pred EEEECC---CCCCHHHHHHHHHHHHCCC
T ss_conf 988897---9998999999999986597
No 232
>1iy2_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 3.20A {Thermus thermophilus} SCOP: c.37.1.20
Probab=49.09 E-value=9.1 Score=17.45 Aligned_cols=34 Identities=35% Similarity=0.298 Sum_probs=22.9
Q ss_pred CCCCEEEECCEEECCCCCCHHHHHHHHHHHHCCCCEEEEE
Q ss_conf 8898899823000788874899999999852473159876
Q gi|254780401|r 42 APIPVICVGGFVMGGTGKTPTALAIAKAVIDKNLKPGFLS 81 (338)
Q Consensus 42 ~~~pVI~VGNitvGGtGKTP~v~~l~~~l~~~g~~~~ils 81 (338)
.|--|+-.|- -|||||-++.++|..+ |.....++
T Consensus 72 ~~rgiLL~GP---pGtGKT~la~aiA~e~---~~~~~~i~ 105 (278)
T 1iy2_A 72 IPKGVLLVGP---PGVGKTHLARAVAGEA---RVPFITAS 105 (278)
T ss_dssp CCCEEEEECC---TTSSHHHHHHHHHHHT---TCCEEEEE
T ss_pred CCCEEEEECC---CCCCCHHHHHHHHHHC---CCCEEEEE
T ss_conf 8884687687---4458648999999974---99769988
No 233
>1sxj_D Activator 1 41 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ ATPase, DNA polymerase; HET: ATG ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=49.08 E-value=5.8 Score=18.81 Aligned_cols=24 Identities=42% Similarity=0.606 Sum_probs=18.7
Q ss_pred EEEECCEEECCCCCCHHHHHHHHHHHH
Q ss_conf 899823000788874899999999852
Q gi|254780401|r 46 VICVGGFVMGGTGKTPTALAIAKAVID 72 (338)
Q Consensus 46 VI~VGNitvGGtGKTP~v~~l~~~l~~ 72 (338)
++-.|- =|||||-++.++|+.+..
T Consensus 61 lLl~Gp---~G~GKTt~a~~la~~~~~ 84 (353)
T 1sxj_D 61 MLFYGP---PGTGKTSTILALTKELYG 84 (353)
T ss_dssp EEEECS---TTSSHHHHHHHHHHHHHH
T ss_pred EEEECC---CCCCHHHHHHHHHHHCCC
T ss_conf 998895---999899999999984478
No 234
>1sxj_B Activator 1 37 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ ATPase, DNA polymerase; HET: ATG ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=48.98 E-value=5.9 Score=18.79 Aligned_cols=26 Identities=27% Similarity=0.484 Sum_probs=19.1
Q ss_pred EEEECCEEECCCCCCHHHHHHHHHHHHCC
Q ss_conf 89982300078887489999999985247
Q gi|254780401|r 46 VICVGGFVMGGTGKTPTALAIAKAVIDKN 74 (338)
Q Consensus 46 VI~VGNitvGGtGKTP~v~~l~~~l~~~g 74 (338)
.+-.|. -|+|||-++..+|+.+....
T Consensus 45 lLl~GP---~G~GKTtla~~la~~l~~~~ 70 (323)
T 1sxj_B 45 MIISGM---PGIGKTTSVHCLAHELLGRS 70 (323)
T ss_dssp EEEECS---TTSSHHHHHHHHHHHHHGGG
T ss_pred EEEECC---CCCCHHHHHHHHHHHHCCCC
T ss_conf 988895---99989999999999866997
No 235
>1a5t_A Delta prime, HOLB; zinc finger, DNA replication; 2.20A {Escherichia coli K12} SCOP: a.80.1.1 c.37.1.20 PDB: 1jr3_E* 1xxh_E* 1xxi_E* 3glf_E* 3glg_E* 3glh_E* 3gli_E*
Probab=48.96 E-value=5.8 Score=18.83 Aligned_cols=31 Identities=10% Similarity=0.100 Sum_probs=22.5
Q ss_pred CCCCCCCEEEECCEEECCCCCCHHHHHHHHHHHH
Q ss_conf 4338898899823000788874899999999852
Q gi|254780401|r 39 RLHAPIPVICVGGFVMGGTGKTPTALAIAKAVID 72 (338)
Q Consensus 39 ~~~~~~pVI~VGNitvGGtGKTP~v~~l~~~l~~ 72 (338)
..++|=..+-.|. -|+|||.++.++|+.|--
T Consensus 20 ~~~l~ha~L~~G~---~G~GK~~~a~~~a~~llc 50 (334)
T 1a5t_A 20 AGRGHHALLIQAL---PGMGDDALIYALSRYLLC 50 (334)
T ss_dssp TTCCCSEEEEECC---TTSCHHHHHHHHHHHHTC
T ss_pred CCCCCEEEEEECC---CCCCHHHHHHHHHHHHCC
T ss_conf 6995603635899---998899999999999708
No 236
>1hjs_A Beta-1,4-galactanase; 4-galactanases, family 53 glycoside hydrolase, thermostability, PH optimum, CLAN GH-A, thermophIle, alkalophIle; HET: NAG EPE; 1.87A {Thielavia heterothallica} SCOP: c.1.8.3 PDB: 1hju_A* 1hjq_A*
Probab=48.90 E-value=13 Score=16.45 Aligned_cols=18 Identities=6% Similarity=-0.093 Sum_probs=11.7
Q ss_pred HHHHHHCCCEEEECHHHH
Q ss_conf 997564798799854663
Q gi|254780401|r 269 LDQAQQKGLILVTTAKDA 286 (338)
Q Consensus 269 ~~~a~~~~~~iiTTEKD~ 286 (338)
.+.+...+.+++.||.+.
T Consensus 231 ~~~~~~~~~~~~i~E~~~ 248 (332)
T 1hjs_A 231 DNMAKTWNKEIAVVETNW 248 (332)
T ss_dssp HHHHHHHCCEEEEEECCC
T ss_pred HHHHHHCCCCEEEEEECC
T ss_conf 999987589559999646
No 237
>2dcl_A Hypothetical UPF0166 protein PH1503; hexamer, X-RAY diffraction, structural genomics, NPPSFA; HET: AMP; 2.28A {Pyrococcus horikoshii}
Probab=48.81 E-value=13 Score=16.44 Aligned_cols=79 Identities=19% Similarity=0.266 Sum_probs=44.8
Q ss_pred CHHHHHHHHHHHHCCCCEEEEEECC---CCCCCCCEEEECCCCCHHHHCCHHHHHHHCCCCCC----CCCHHHHHHHHCC
Q ss_conf 4899999999852473159876045---78777755871456788770421233220576346----5201225664102
Q gi|254780401|r 60 TPTALAIAKAVIDKNLKPGFLSRGY---GRKSRISFRVDLEKHSAYDVGDEPLLLARRAVTIV----TSDRKIGVQMLLQ 132 (338)
Q Consensus 60 TP~v~~l~~~l~~~g~~~~ilsRGY---g~~~~~~~~v~~~~~~~~~vGDEp~lla~~~pv~V----~~~R~~~~~~~~~ 132 (338)
-|+..||.+.+++.|..=+.+.||. |.... + | .+-.+-++..-||+| .+++.++....++
T Consensus 25 ~pL~~~Il~~are~GiaGaTV~rGi~GfG~~g~--i------h-----~~~~~~Ls~dlPvvVe~vD~~eki~~~l~~L~ 91 (127)
T 2dcl_A 25 RPLYKVIVEKLREMGIAGATVYRGIYGFGKKSR--V------H-----SSDVIRLSTDLPIIVEVVDRGHNIEKVVNVIK 91 (127)
T ss_dssp EEHHHHHHHHHHHTTCSCEEEEECSEEEC---------------------------CCCEEEEEEEEEHHHHHHHHHHHT
T ss_pred EEHHHHHHHHHHHCCCCCEEEEECCEEECCCCC--E------E-----CCCEEECCCCCCEEEEEECCHHHHHHHHHHHH
T ss_conf 199999999998879982799964043289996--6------1-----56212216999879999789999999999999
Q ss_pred -C-CCCEEEECCCCCCCCCCCEEEEEEECCC
Q ss_conf -4-5747997183223441230699996184
Q gi|254780401|r 133 -E-GVDIIIMDDGFHSADLQADFSLIVVNSH 161 (338)
Q Consensus 133 -~-~~diiIlDDGfQh~~l~rdl~Ivl~d~~ 161 (338)
. ..-+|.+. |++++-....
T Consensus 92 ~~v~~glIt~e----------~V~V~~~~~~ 112 (127)
T 2dcl_A 92 PMIKDGMITVE----------PTIVLWVGTQ 112 (127)
T ss_dssp TTCSSSEEEEE----------ECEEEECCSS
T ss_pred HHCCCCEEEEE----------EEEEEEECCC
T ss_conf 86468659999----------9899996685
No 238
>1f6b_A SAR1; gtpases, N-terminal helix, Mg-containing complex, protein transport; HET: GDP; 1.70A {Cricetulus griseus} SCOP: c.37.1.8 PDB: 2fmx_A* 2fa9_A* 2gao_A*
Probab=48.62 E-value=6.3 Score=18.61 Aligned_cols=40 Identities=25% Similarity=0.308 Sum_probs=21.7
Q ss_pred HHHHHHHHH----HHHHHCCCCCCCCCEEEECCEEECCCCCCHHHHHH
Q ss_conf 999999999----99740464338898899823000788874899999
Q gi|254780401|r 23 SWIYSFISS----KLMKRGQRLHAPIPVICVGGFVMGGTGKTPTALAI 66 (338)
Q Consensus 23 s~iy~~~~~----~~~~~~~~~~~~~pVI~VGNitvGGtGKTP~v~~l 66 (338)
+++|-|+++ ....+... +-++.|+.+|. .|+|||-+...+
T Consensus 2 ~~~~~~~~~~~~~~~~~~~~~-kk~~KIlilG~---~~sGKTSll~~l 45 (198)
T 1f6b_A 2 SFIFDWIYSGFSSVLQFLGLY-KKTGKLVFLGL---DNAGKTTLLHML 45 (198)
T ss_dssp -----------CHHHHHHTCT-TCCEEEEEEEE---TTSSHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHHCCC-CCCCEEEEECC---CCCCHHHHHHHH
T ss_conf 469999999999999873025-67118999999---999889999999
No 239
>2yva_A DNAA initiator-associating protein DIAA; intermolecular disulfide bonding, putative phosphosugar binding protein, DNAA binding protein; 1.85A {Escherichia coli}
Probab=48.39 E-value=13 Score=16.41 Aligned_cols=17 Identities=12% Similarity=0.255 Sum_probs=8.4
Q ss_pred HHHHHHHCCCCCCEEEE
Q ss_conf 22566410245747997
Q gi|254780401|r 124 KIGVQMLLQEGVDIIIM 140 (338)
Q Consensus 124 ~~~~~~~~~~~~diiIl 140 (338)
..+++++.+.+..+|-+
T Consensus 126 i~a~~~Ak~~g~~~i~l 142 (196)
T 2yva_A 126 VKAVEAAVTRDMTIVAL 142 (196)
T ss_dssp HHHHHHHHHTTCEEEEE
T ss_pred HHHHHHHHHCCCEEEEE
T ss_conf 99999999869989999
No 240
>3d3q_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2; 2.70A {Staphylococcus epidermidis atcc 12228}
Probab=48.33 E-value=8.8 Score=17.56 Aligned_cols=29 Identities=28% Similarity=0.379 Sum_probs=20.4
Q ss_pred EEEECCEEECCCCCCHHHHHHHHHHHHCCCCEEEEE
Q ss_conf 899823000788874899999999852473159876
Q gi|254780401|r 46 VICVGGFVMGGTGKTPTALAIAKAVIDKNLKPGFLS 81 (338)
Q Consensus 46 VI~VGNitvGGtGKTP~v~~l~~~l~~~g~~~~ils 81 (338)
||+|--- -|+|||-+++.||+.|. ..|||
T Consensus 9 li~i~Gp--TasGKT~la~~LA~~l~-----~eIIs 37 (340)
T 3d3q_A 9 LIVIVGP--TASGKTELSIEVAKKFN-----GEIIS 37 (340)
T ss_dssp EEEEECS--TTSSHHHHHHHHHHHTT-----EEEEE
T ss_pred EEEEECC--CCCCHHHHHHHHHHHCC-----CEEEE
T ss_conf 6999897--71358999999999879-----98994
No 241
>1ixz_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 2.20A {Thermus thermophilus} SCOP: c.37.1.20 PDB: 1iy0_A* 1iy1_A*
Probab=48.10 E-value=9.6 Score=17.27 Aligned_cols=34 Identities=35% Similarity=0.298 Sum_probs=23.5
Q ss_pred CCCCEEEECCEEECCCCCCHHHHHHHHHHHHCCCCEEEEE
Q ss_conf 8898899823000788874899999999852473159876
Q gi|254780401|r 42 APIPVICVGGFVMGGTGKTPTALAIAKAVIDKNLKPGFLS 81 (338)
Q Consensus 42 ~~~pVI~VGNitvGGtGKTP~v~~l~~~l~~~g~~~~ils 81 (338)
.|--|+-.|- =|||||-++.++++.+ |..+..++
T Consensus 48 ~p~giLl~Gp---pGtGKT~la~aia~e~---~~~~~~i~ 81 (254)
T 1ixz_A 48 IPKGVLLVGP---PGVGKTHLARAVAGEA---RVPFITAS 81 (254)
T ss_dssp CCSEEEEECC---TTSSHHHHHHHHHHHT---TCCEEEEE
T ss_pred CCCEEEEECC---CCCCCHHHHHHHHHHC---CCCEEEEE
T ss_conf 8865787778---7656279999999763---99769988
No 242
>2wja_A Putative acid phosphatase WZB; hydrolase; 2.50A {Escherichia coli}
Probab=47.89 E-value=13 Score=16.34 Aligned_cols=36 Identities=25% Similarity=0.486 Sum_probs=27.0
Q ss_pred CCCEEEECCEEECCCCCCHHHHHHHHHHHHCCCCEEEEEECCCC
Q ss_conf 89889982300078887489999999985247315987604578
Q gi|254780401|r 43 PIPVICVGGFVMGGTGKTPTALAIAKAVIDKNLKPGFLSRGYGR 86 (338)
Q Consensus 43 ~~pVI~VGNitvGGtGKTP~v~~l~~~l~~~g~~~~ilsRGYg~ 86 (338)
.|-.||.||+ .-.|++.++.+.+.+. ..|-|.|-+.
T Consensus 28 ~ILFVCtgNi-----cRSpmAEail~~~~~~---~~v~SaG~~~ 63 (168)
T 2wja_A 28 SILVICTGNI-----CRSPIGERLLRRLLPS---KKINSAGVGA 63 (168)
T ss_dssp EEEEEESSSS-----SHHHHHHHHHHHHSTT---SEEEEEETTC
T ss_pred EEEEEECCCH-----HHHHHHHHHHHHCCCC---CCEEEEEEEC
T ss_conf 2899928956-----7999999999974888---8658668743
No 243
>2cdn_A Adenylate kinase; phosphoryl transfer, associative mechanism, ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase; HET: ADP; 1.9A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1p4s_A
Probab=47.77 E-value=11 Score=16.74 Aligned_cols=24 Identities=29% Similarity=0.513 Sum_probs=20.0
Q ss_pred CCEEEECCEEECCCCCCHHHHHHHHHH
Q ss_conf 988998230007888748999999998
Q gi|254780401|r 44 IPVICVGGFVMGGTGKTPTALAIAKAV 70 (338)
Q Consensus 44 ~pVI~VGNitvGGtGKTP~v~~l~~~l 70 (338)
.-|+.+|.- |+|||-.+..|++.|
T Consensus 21 m~I~i~G~p---GsGKsT~a~~Lak~l 44 (201)
T 2cdn_A 21 MRVLLLGPP---GAGKGTQAVKLAEKL 44 (201)
T ss_dssp CEEEEECCT---TSSHHHHHHHHHHHH
T ss_pred CEEEEECCC---CCCHHHHHHHHHHHH
T ss_conf 479998999---999899999999997
No 244
>2fb1_A Conserved hypothetical protein; structural genomics, PSI, protein structure initiative; 2.50A {Bacteroides thetaiotaomicron vpi-5482} SCOP: a.4.5.68 d.113.1.6
Probab=47.65 E-value=12 Score=16.70 Aligned_cols=37 Identities=22% Similarity=0.425 Sum_probs=24.9
Q ss_pred CCCEEEE--CCCCCCCCCCCEEEEEEECC-CCCCCCCCCCCCHHHHHC
Q ss_conf 5747997--18322344123069999618-433566553761365210
Q gi|254780401|r 134 GVDIIIM--DDGFHSADLQADFSLIVVNS-HRGLGNGLVFPAGPLRVP 178 (338)
Q Consensus 134 ~~diiIl--DDGfQh~~l~rdl~Ivl~d~-~~~~gn~~llPaGpLREp 178 (338)
.+|+||+ ||| ++.++|+.- ..|+.+.+-||.|.++..
T Consensus 15 svd~vif~~~~~--------~l~VLLvkR~~~P~~g~WaLPGG~ve~g 54 (226)
T 2fb1_A 15 GIDCIIFGFNEG--------EISLLLLKRNFEPAMGEWSLMGGFVQKD 54 (226)
T ss_dssp EEEEEEEEEETT--------EEEEEEEECSSSSSTTCEECEEEECCTT
T ss_pred EEEEEEEEEECC--------CCEEEEEECCCCCCCCCEECCCCCCCCC
T ss_conf 899999998799--------6589999846898999787980047799
No 245
>1ofh_A ATP-dependent HSL protease ATP-binding subunit HSLU; chaperone, hydrolase, ATP-binding; HET: ADP; 2.5A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1ofi_A*
Probab=47.63 E-value=6.4 Score=18.56 Aligned_cols=28 Identities=32% Similarity=0.450 Sum_probs=20.5
Q ss_pred CCCCEEEECCEEECCCCCCHHHHHHHHHHHH
Q ss_conf 8898899823000788874899999999852
Q gi|254780401|r 42 APIPVICVGGFVMGGTGKTPTALAIAKAVID 72 (338)
Q Consensus 42 ~~~pVI~VGNitvGGtGKTP~v~~l~~~l~~ 72 (338)
.|--|+-+|.= |||||=++..||+.+..
T Consensus 49 ~p~giLl~GPp---G~GKT~lAkalA~~l~~ 76 (310)
T 1ofh_A 49 TPKNILMIGPT---GVGKTEIARRLAKLANA 76 (310)
T ss_dssp CCCCEEEECCT---TSSHHHHHHHHHHHHTC
T ss_pred CCCEEEEECCC---CCCHHHHHHHHHHHHHC
T ss_conf 98669998999---98888999999887432
No 246
>1p9o_A Phosphopantothenoylcysteine synthetase; ligase; 2.30A {Homo sapiens} SCOP: c.72.3.1
Probab=47.60 E-value=6.4 Score=18.52 Aligned_cols=38 Identities=26% Similarity=0.327 Sum_probs=31.3
Q ss_pred CCCC-CEEEECCEEECCCCCCHHHHHHHHHHHHCCCCEEEEEEC
Q ss_conf 3889-889982300078887489999999985247315987604
Q gi|254780401|r 41 HAPI-PVICVGGFVMGGTGKTPTALAIAKAVIDKNLKPGFLSRG 83 (338)
Q Consensus 41 ~~~~-pVI~VGNitvGGtGKTP~v~~l~~~l~~~g~~~~ilsRG 83 (338)
.... ||=.|.|.+.|.+|. +||+.+..+|+.|..|++-
T Consensus 50 pID~~pVR~ItN~SSGk~G~-----alA~~~~~~Ga~V~li~g~ 88 (313)
T 1p9o_A 50 PLEARPVRFLDNFSSGRRGA-----TSAEAFLAAGYGVLFLYRA 88 (313)
T ss_dssp ESSSSCSEEEEECCCCHHHH-----HHHHHHHHTTCEEEEEEET
T ss_pred CCCCCCCEEECCCCCHHHHH-----HHHHHHHHCCCEEEEEECC
T ss_conf 55789844870688608899-----9999999869989999468
No 247
>2hf9_A Probable hydrogenase nickel incorporation protein HYPB; alpha and beta protein; HET: GSP; 1.90A {Methanocaldococcus jannaschii} PDB: 2hf8_A*
Probab=47.34 E-value=12 Score=16.67 Aligned_cols=41 Identities=20% Similarity=0.199 Sum_probs=30.3
Q ss_pred CCCCCEE-EECCEEECCCCCCHHHHHHHHHHHHCCCCEEEEEECCC
Q ss_conf 3889889-98230007888748999999998524731598760457
Q gi|254780401|r 41 HAPIPVI-CVGGFVMGGTGKTPTALAIAKAVIDKNLKPGFLSRGYG 85 (338)
Q Consensus 41 ~~~~pVI-~VGNitvGGtGKTP~v~~l~~~l~~~g~~~~ilsRGYg 85 (338)
+..+||| .||- -|+|||-+.-.|++..... .++++++..-+
T Consensus 35 ~~~~~~V~ivG~---pnaGKSTLln~L~~~~~~~-~~v~~v~~d~~ 76 (226)
T 2hf9_A 35 KHGVVAFDFMGA---IGSGKTLLIEKLIDNLKDK-YKIACIAGDVI 76 (226)
T ss_dssp HTTCEEEEEEES---TTSSHHHHHHHHHHHHTTT-CCEEEEEEETT
T ss_pred HCCCEEEEEECC---CCCCHHHHHHHHHHHHHCC-CCEEEEECCCC
T ss_conf 749849999889---9998999999999984036-60688845642
No 248
>2iya_A OLEI, oleandomycin glycosyltransferase; carbohydrate, glycosylation, enzyme, macrolide; HET: UDP ZIO; 1.7A {Streptomyces antibioticus}
Probab=47.10 E-value=13 Score=16.26 Aligned_cols=39 Identities=15% Similarity=0.348 Sum_probs=28.6
Q ss_pred CCCEEEECCEEECCCCCCHHHHHHHHHHHHCCCCEEEEEECC
Q ss_conf 898899823000788874899999999852473159876045
Q gi|254780401|r 43 PIPVICVGGFVMGGTGKTPTALAIAKAVIDKNLKPGFLSRGY 84 (338)
Q Consensus 43 ~~pVI~VGNitvGGtGKTP~v~~l~~~l~~~g~~~~ilsRGY 84 (338)
+..|.. ++.+|.|-.=-.+.|++.|.++|+.|.+++-+.
T Consensus 12 ~~~ilf---~~~p~~GHv~p~l~la~~L~~rGH~V~v~~~~~ 50 (424)
T 2iya_A 12 PRHISF---FNIPGHGHVNPSLGIVQELVARGHRVSYAITDE 50 (424)
T ss_dssp CCEEEE---ECCSCHHHHHHHHHHHHHHHHTTCEEEEEECGG
T ss_pred CCEEEE---ECCCCHHHHHHHHHHHHHHHHCCCEEEEEECCC
T ss_conf 984999---778716379999999999998889899996841
No 249
>3b6e_A Interferon-induced helicase C domain-containing protein 1; DECH, DEXD/H RNA-binding helicase, innate immunity, IFIH1, structural genomics; 1.60A {Homo sapiens}
Probab=47.07 E-value=2.6 Score=21.27 Aligned_cols=19 Identities=53% Similarity=0.674 Sum_probs=13.8
Q ss_pred CCCCCCHHHHHHHHHHHHC
Q ss_conf 7888748999999998524
Q gi|254780401|r 55 GGTGKTPTALAIAKAVIDK 73 (338)
Q Consensus 55 GGtGKTP~v~~l~~~l~~~ 73 (338)
=|+|||-+..+++..+...
T Consensus 57 TGsGKT~~~~~~~~~~l~~ 75 (216)
T 3b6e_A 57 TGSGKTRVAVYIAKDHLDK 75 (216)
T ss_dssp CHHHHHHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHHH
T ss_conf 9984899999999999873
No 250
>3bwd_D RAC-like GTP-binding protein ARAC6; G domain, cytoplasm, lipoprotein, membrane, methylation, nucleotide-binding, prenylation, ----; HET: GDP; 1.53A {Arabidopsis thaliana} PDB: 2nty_C* 2wbl_C
Probab=47.04 E-value=9.1 Score=17.44 Aligned_cols=23 Identities=30% Similarity=0.436 Sum_probs=17.6
Q ss_pred CCCEEEECCEEECCCCCCHHHHHHHH
Q ss_conf 89889982300078887489999999
Q gi|254780401|r 43 PIPVICVGGFVMGGTGKTPTALAIAK 68 (338)
Q Consensus 43 ~~pVI~VGNitvGGtGKTP~v~~l~~ 68 (338)
-+.|+.||+ .|+|||-++..+++
T Consensus 8 ~iKivvvG~---~~vGKTsli~r~~~ 30 (182)
T 3bwd_D 8 FIKCVTVGD---GAVGKTCLLISYTS 30 (182)
T ss_dssp CCEEEEECS---TTSSHHHHHHHHHH
T ss_pred EEEEEEECC---CCCCHHHHHHHHHH
T ss_conf 349999997---99798999999973
No 251
>2plr_A DTMP kinase, probable thymidylate kinase; TMP-binding, ATP-binding, structural genomics, NPPSFA; HET: 1PE PGE EPE PG4; 1.60A {Sulfolobus tokodaii str}
Probab=47.04 E-value=10 Score=17.06 Aligned_cols=29 Identities=24% Similarity=0.204 Sum_probs=21.1
Q ss_pred EEEE-CCEEECCCCCCHHHHHHHHHHHHCCCCEE
Q ss_conf 8998-23000788874899999999852473159
Q gi|254780401|r 46 VICV-GGFVMGGTGKTPTALAIAKAVIDKNLKPG 78 (338)
Q Consensus 46 VI~V-GNitvGGtGKTP~v~~l~~~l~~~g~~~~ 78 (338)
.|+| |+. |+|||-.+..|++.|...+ .+.
T Consensus 6 ~I~ieG~d---GsGKsT~~~~L~~~l~~~~-~~~ 35 (213)
T 2plr_A 6 LIAFEGID---GSGKSSQATLLKDWIELKR-DVY 35 (213)
T ss_dssp EEEEECCT---TSSHHHHHHHHHHHHTTTS-CEE
T ss_pred EEEEECCC---CCCHHHHHHHHHHHHHHCC-CEE
T ss_conf 89998998---8729999999999997189-889
No 252
>1ulu_A Enoyl-acyl carrier protein reductase; oxidoreductase, structural genomics, riken structural genomics/proteomics initiative, RSGI; 2.00A {Thermus thermophilus} SCOP: c.2.1.2 PDB: 2yw9_A*
Probab=47.01 E-value=13 Score=16.25 Aligned_cols=31 Identities=23% Similarity=0.296 Sum_probs=25.2
Q ss_pred EEECCCCCCHHHHHHHHHHHHCCCCEEEEEE
Q ss_conf 0007888748999999998524731598760
Q gi|254780401|r 52 FVMGGTGKTPTALAIAKAVIDKNLKPGFLSR 82 (338)
Q Consensus 52 itvGGtGKTP~v~~l~~~l~~~g~~~~ilsR 82 (338)
+.+||||-.=+=..+|+.|.+.|.++++.+|
T Consensus 12 lITGasg~~GIG~aia~~la~~Ga~V~i~~~ 42 (261)
T 1ulu_A 12 LVMGVTNQRSLGFAIAAKLKEAGAEVALSYQ 42 (261)
T ss_dssp EEESCCCSSSHHHHHHHHHHHTTCEEEEEES
T ss_pred EEECCCCCCHHHHHHHHHHHHCCCEEEEECC
T ss_conf 9979999864999999999987999999817
No 253
>3hr8_A Protein RECA; alpha and beta proteins (A/B, A+B), ATP-binding, cytoplasm, damage, DNA recombination, DNA repair, DNA-binding; 1.95A {Thermotoga maritima}
Probab=47.00 E-value=12 Score=16.60 Aligned_cols=40 Identities=30% Similarity=0.439 Sum_probs=29.3
Q ss_pred CCCCCEEEE-----------CCEEEC---------CCCCCHHHHHHHHHHHHCCCCEEEE
Q ss_conf 388988998-----------230007---------8887489999999985247315987
Q gi|254780401|r 41 HAPIPVICV-----------GGFVMG---------GTGKTPTALAIAKAVIDKNLKPGFL 80 (338)
Q Consensus 41 ~~~~pVI~V-----------GNitvG---------GtGKTP~v~~l~~~l~~~g~~~~il 80 (338)
..++++|+- |-+..| |||||-++..++...++.|..++.+
T Consensus 36 ~~~~~~i~TG~~~lD~~lg~GG~p~Gritei~G~~~sGKT~l~l~~~a~~qk~g~~~vyi 95 (356)
T 3hr8_A 36 VQPVEVIPTGSLAIDIATGVGGYPRGRIVEIFGQESSGKTTLALHAIAEAQKMGGVAAFI 95 (356)
T ss_dssp CCCCCEECCSCHHHHHHTSSSSEETTEEEEEEESTTSSHHHHHHHHHHHHHHTTCCEEEE
T ss_pred CCCCCEECCCCHHHHHHHCCCCCCCCEEEEEECCCCCCHHHHHHHHHHHHHCCCCEEEEE
T ss_conf 686754677878999875789986884999978987758899999888875379838998
No 254
>1fob_A Beta-1,4-galactanase; B/A barrel, glycosyl hydrolase, family 53, CLAN GH-A; 1.80A {Aspergillus aculeatus} SCOP: c.1.8.3 PDB: 1fhl_A
Probab=46.98 E-value=13 Score=16.25 Aligned_cols=53 Identities=11% Similarity=-0.021 Sum_probs=25.7
Q ss_pred HHHHHHHHHHC------CCCCCCCCCCCCC-CCCHHHHH-HHHHHHHHCCCEEEECHHHHH
Q ss_conf 78999887401------0000122143323-48989999-999975647987998546634
Q gi|254780401|r 235 EKFFTTVRQLG------ALIEQCYSFGDHA-HLSDKKIA-YLLDQAQQKGLILVTTAKDAM 287 (338)
Q Consensus 235 ~~F~~~L~~~g------~~i~~~~~fpDHh-~ys~~dl~-~i~~~a~~~~~~iiTTEKD~V 287 (338)
..|++.+...+ +.++....||.=+ .-+..++. .+...+...+..++.+|-++-
T Consensus 190 ~~~~d~~~~~g~~~~~~~D~ig~s~Yp~w~~~~~~~~~~~~l~~l~~~y~k~v~i~E~~~~ 250 (334)
T 1fob_A 190 NYFYETVLATGELLSTDFDYFGVSYYPFYSASATLASLKTSLANLQSTYDKPVVVVETNWP 250 (334)
T ss_dssp HHHHHHHHHTSSSCGGGCCEEEEECCSSSCTTCCHHHHHHHHHHHHHHHCCCEEEEECCCC
T ss_pred HHHHHHHHHHCCCCCCCEEEEEEEECCCCCCCCHHHHHHHHHHHHHHHCCCCEEEEEECCC
T ss_conf 4789999862444577442783332788887343999999999999970997599993124
No 255
>3pfi_A Holliday junction ATP-dependent DNA helicase RUVB; probable holliday junction DNA helicase; HET: ADP; 2.69A {Campylobacter jejuni subsp}
Probab=46.93 E-value=5.8 Score=18.86 Aligned_cols=25 Identities=28% Similarity=0.348 Sum_probs=19.1
Q ss_pred CEEEECCEEECCCCCCHHHHHHHHHHHH
Q ss_conf 8899823000788874899999999852
Q gi|254780401|r 45 PVICVGGFVMGGTGKTPTALAIAKAVID 72 (338)
Q Consensus 45 pVI~VGNitvGGtGKTP~v~~l~~~l~~ 72 (338)
.+|--|. -|||||-++..+|+.+..
T Consensus 57 s~lf~GP---PG~GKTTlA~iiA~~~~~ 81 (338)
T 3pfi_A 57 HILFSGP---AGLGKTTLANIISYEMSA 81 (338)
T ss_dssp CEEEECS---TTSSHHHHHHHHHHHTTC
T ss_pred EEEEECC---CCCCHHHHHHHHHHHHCC
T ss_conf 4898898---998799999999984189
No 256
>1iqp_A RFCS; clamp loader, extended AAA-ATPase domain, complex with ADP, replication; HET: ADP; 2.80A {Pyrococcus furiosus} SCOP: a.80.1.1 c.37.1.20
Probab=46.79 E-value=6.7 Score=18.41 Aligned_cols=19 Identities=42% Similarity=0.681 Sum_probs=16.1
Q ss_pred CCCCCCHHHHHHHHHHHHC
Q ss_conf 7888748999999998524
Q gi|254780401|r 55 GGTGKTPTALAIAKAVIDK 73 (338)
Q Consensus 55 GGtGKTP~v~~l~~~l~~~ 73 (338)
-|+|||-++..+|+.+-..
T Consensus 55 ~G~GKTtla~~lak~~~~~ 73 (327)
T 1iqp_A 55 PGVGKTTAALALARELFGE 73 (327)
T ss_dssp TTSSHHHHHHHHHHHHHGG
T ss_pred CCCCHHHHHHHHHHHHHHC
T ss_conf 9999999999999997640
No 257
>1ycg_A Nitric oxide reductase; DIIRON site, oxidoreductase; HET: FMN; 2.80A {Moorella thermoacetica} SCOP: c.23.5.1 d.157.1.3 PDB: 1ycf_A* 1ych_A*
Probab=46.66 E-value=14 Score=16.21 Aligned_cols=72 Identities=13% Similarity=0.089 Sum_probs=34.9
Q ss_pred CCCCHHHHHHHHHHHHC----CCCEEEEEECCCCCCCCCEEEECCCCCHHHHCCHHHHHHH--CCCCCCCCCHHHHHHHH
Q ss_conf 88748999999998524----7315987604578777755871456788770421233220--57634652012256641
Q gi|254780401|r 57 TGKTPTALAIAKAVIDK----NLKPGFLSRGYGRKSRISFRVDLEKHSAYDVGDEPLLLAR--RAVTIVTSDRKIGVQML 130 (338)
Q Consensus 57 tGKTP~v~~l~~~l~~~----g~~~~ilsRGYg~~~~~~~~v~~~~~~~~~vGDEp~lla~--~~pv~V~~~R~~~~~~~ 130 (338)
||-......+.+.+++. ..+-.|+| ++.+..+|-=+.++.+ ..+++.++.........
T Consensus 51 tg~~~~~~~~~~~l~~~~~~~~I~~Ii~T----------------H~H~DH~Gg~~~l~~~~p~~~v~~~~~~~~~~~~~ 114 (398)
T 1ycg_A 51 TVYEPFKEELIAKLKQIKDPVKLDYLVVN----------------HTESDHAGAFPAIMELCPDAHVLCTQRAFDSLKAH 114 (398)
T ss_dssp CCCGGGHHHHHHHHHHHCSSCCCSEEEES----------------CCSHHHHTTHHHHHHHCTTCEEEECHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHCCCCCCCEEEEC----------------CCCHHHHHHHHHHHHHCCCCEEEECHHHHHHHHHH
T ss_conf 99846799999999975597686599927----------------89867770599999868999899689999877640
Q ss_pred CC-CCCCEEEECCCC
Q ss_conf 02-457479971832
Q gi|254780401|r 131 LQ-EGVDIIIMDDGF 144 (338)
Q Consensus 131 ~~-~~~diiIlDDGf 144 (338)
.. ......++.||-
T Consensus 115 ~~~~~~~~~~~~~g~ 129 (398)
T 1ycg_A 115 YSHIDFNYTIVKTGT 129 (398)
T ss_dssp TCSCCCEEEECCTTC
T ss_pred CCCCCCCCEEECCCC
T ss_conf 246775506825998
No 258
>2c9o_A RUVB-like 1; hexameric helicase, AAA+-ATPase, ATP-binding, chromatin regulator, growth regulation, hydrolase, nuclear protein, DNA recombination; HET: ADP; 2.2A {Homo sapiens}
Probab=46.60 E-value=6.7 Score=18.37 Aligned_cols=26 Identities=46% Similarity=0.471 Sum_probs=19.4
Q ss_pred CCCEEEECCEEECCCCCCHHHHHHHHHHH
Q ss_conf 89889982300078887489999999985
Q gi|254780401|r 43 PIPVICVGGFVMGGTGKTPTALAIAKAVI 71 (338)
Q Consensus 43 ~~pVI~VGNitvGGtGKTP~v~~l~~~l~ 71 (338)
|--++-+|-= |||||-++..||+.+-
T Consensus 63 ~k~iLl~GPp---GtGKT~iAralA~~lg 88 (456)
T 2c9o_A 63 GRAVLLAGPP---GTGKTALALAIAQELG 88 (456)
T ss_dssp TCEEEEECCT---TSSHHHHHHHHHHHHC
T ss_pred CCEEEEECCC---CCCHHHHHHHHHHHHC
T ss_conf 8779998999---9779999999999748
No 259
>2r8r_A Sensor protein; KDPD, PFAM02702, MCSG, structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics; 2.30A {Pseudomonas syringae PV}
Probab=46.45 E-value=14 Score=16.19 Aligned_cols=26 Identities=27% Similarity=0.278 Sum_probs=23.3
Q ss_pred ECCCCCCHHHHHHHHHHHHCCCCEEE
Q ss_conf 07888748999999998524731598
Q gi|254780401|r 54 MGGTGKTPTALAIAKAVIDKNLKPGF 79 (338)
Q Consensus 54 vGGtGKTP~v~~l~~~l~~~g~~~~i 79 (338)
+-|.|||=.-+.=|..++++|..|+|
T Consensus 14 apGVGKTy~ML~~A~~l~~~G~DVVi 39 (228)
T 2r8r_A 14 APGVGKTYAMLQAAHAQLRQGVRVMA 39 (228)
T ss_dssp STTSSHHHHHHHHHHHHHHTTCCEEE
T ss_pred CCCCCHHHHHHHHHHHHHHCCCCEEE
T ss_conf 89887899999999999978996799
No 260
>1xww_A Low molecular weight phosphotyrosine protein phosphatase; hydrolase; 1.63A {Homo sapiens} PDB: 1bvh_A 1dg9_A* 1phr_A 1pnt_A 1z12_A 1z13_A 1c0e_A 2p4u_A 5pnt_A*
Probab=46.38 E-value=8.3 Score=17.73 Aligned_cols=38 Identities=18% Similarity=0.319 Sum_probs=28.4
Q ss_pred CCEEEECCEEECCCCCCHHHHHHHHHHHHC-C--CCEEEEEECCCC
Q ss_conf 988998230007888748999999998524-7--315987604578
Q gi|254780401|r 44 IPVICVGGFVMGGTGKTPTALAIAKAVIDK-N--LKPGFLSRGYGR 86 (338)
Q Consensus 44 ~pVI~VGNitvGGtGKTP~v~~l~~~l~~~-g--~~~~ilsRGYg~ 86 (338)
|-.+|.||+ .-.||+..+.+.+.+. | -+..+-|-|-..
T Consensus 8 VLfVCtgN~-----cRS~mAE~il~~~~~~~~~~~~~~v~SAG~~~ 48 (157)
T 1xww_A 8 VLFVCLGNI-----CRSPIAEAVFRKLVTDQNISENWVIDSGAVSD 48 (157)
T ss_dssp EEEEESSSS-----SHHHHHHHHHHHHHHHTTCGGGEEEEEEESSS
T ss_pred EEEEECCCH-----HHHHHHHHHHHHHHHHCCCCCCEEEEEECCCC
T ss_conf 999919868-----99999999999999866998744898403554
No 261
>2atv_A RERG, RAS-like estrogen-regulated growth inhibitor; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=46.35 E-value=8.4 Score=17.70 Aligned_cols=27 Identities=19% Similarity=0.319 Sum_probs=19.5
Q ss_pred CCCCCCCEEEECCEEECCCCCCHHHHHHHH
Q ss_conf 433889889982300078887489999999
Q gi|254780401|r 39 RLHAPIPVICVGGFVMGGTGKTPTALAIAK 68 (338)
Q Consensus 39 ~~~~~~pVI~VGNitvGGtGKTP~v~~l~~ 68 (338)
.....+.|+.||+ +|+|||-+...++.
T Consensus 24 ~~~~~iKIvvvG~---~~vGKTsLi~r~~~ 50 (196)
T 2atv_A 24 AKSAEVKLAIFGR---AGVGKSALVVRFLT 50 (196)
T ss_dssp ---CCEEEEEECC---TTSSHHHHHHHHHH
T ss_pred CCCCCEEEEEECC---CCCCHHHHHHHHHH
T ss_conf 7898769999999---99789999999972
No 262
>3eie_A Vacuolar protein sorting-associated protein 4; AAA ATPase, ATP-binding cassette, ATP-binding, endosome, membrane, nucleotide-binding; 2.70A {Saccharomyces cerevisiae} PDB: 3eih_A* 2rko_A 3mhv_C
Probab=46.26 E-value=6.9 Score=18.32 Aligned_cols=27 Identities=30% Similarity=0.314 Sum_probs=20.5
Q ss_pred CCCCEEEECCEEECCCCCCHHHHHHHHHHH
Q ss_conf 889889982300078887489999999985
Q gi|254780401|r 42 APIPVICVGGFVMGGTGKTPTALAIAKAVI 71 (338)
Q Consensus 42 ~~~pVI~VGNitvGGtGKTP~v~~l~~~l~ 71 (338)
.+--|+-.|- -|||||-++.++|+.+.
T Consensus 50 ~~~giLL~GP---pGtGKT~la~aiA~e~~ 76 (322)
T 3eie_A 50 PTSGILLYGP---PGTGKSYLAKAVATEAN 76 (322)
T ss_dssp CCCEEEEECS---SSSCHHHHHHHHHHHHT
T ss_pred CCCEEEEECC---CCCCHHHHHHHHHHHHC
T ss_conf 9971688797---99878999999999858
No 263
>2iw1_A Lipopolysaccharide core biosynthesis protein RFAG; transferase, lipopolysaccharide biosynthesis, family GT-4, glycosyltransferase, LPS; HET: U2F; 1.5A {Escherichia coli} SCOP: c.87.1.8 PDB: 2iv7_A*
Probab=46.25 E-value=11 Score=16.86 Aligned_cols=34 Identities=15% Similarity=0.286 Sum_probs=26.9
Q ss_pred ECCCCCCHHHHHHHHHHHHCCCCEEEEEECCCCCCC
Q ss_conf 078887489999999985247315987604578777
Q gi|254780401|r 54 MGGTGKTPTALAIAKAVIDKNLKPGFLSRGYGRKSR 89 (338)
Q Consensus 54 vGGtGKTP~v~~l~~~l~~~g~~~~ilsRGYg~~~~ 89 (338)
.||+.+ .+..|++.|.++|+.|.|+++.+.+...
T Consensus 13 ~GG~e~--~~~~la~~L~~~Gh~V~v~t~~~~~~~~ 46 (374)
T 2iw1_A 13 FGGLQR--DFMRIASTVAARGHHVRVYTQSWEGDCP 46 (374)
T ss_dssp TCHHHH--HHHHHHHHHHHTTCCEEEEESEECSCCC
T ss_pred CCCHHH--HHHHHHHHHHHCCCEEEEEECCCCCCCC
T ss_conf 998899--9999999999779969999667877789
No 264
>2if2_A Dephospho-COA kinase; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; 3.00A {Aquifex aeolicus VF5}
Probab=46.25 E-value=6.7 Score=18.40 Aligned_cols=24 Identities=21% Similarity=0.228 Sum_probs=15.5
Q ss_pred EEECCEEECCCCCCHHHHHHHHHHHHCCCCE
Q ss_conf 9982300078887489999999985247315
Q gi|254780401|r 47 ICVGGFVMGGTGKTPTALAIAKAVIDKNLKP 77 (338)
Q Consensus 47 I~VGNitvGGtGKTP~v~~l~~~l~~~g~~~ 77 (338)
-.+|.+ |+|||-+ +++|++.|+.+
T Consensus 5 gItG~i---GSGKSTv----~~~l~~~G~~v 28 (204)
T 2if2_A 5 GLTGNI---GCGKSTV----AQMFRELGAYV 28 (204)
T ss_dssp EEEECT---TSSHHHH----HHHHHHTTCEE
T ss_pred EEECCC---CCCHHHH----HHHHHHCCCEE
T ss_conf 997999---7779999----99999879939
No 265
>2jl1_A Triphenylmethane reductase; oxidoreductase, bioremediation; HET: NAP GOL; 1.96A {Citrobacter SP} PDB: 2vrb_A* 2vrc_A 2vrc_D
Probab=45.90 E-value=14 Score=16.13 Aligned_cols=30 Identities=20% Similarity=0.221 Sum_probs=23.6
Q ss_pred EEECCCCCCHHHHHHHHHHHHC--CCCEEEEEEC
Q ss_conf 0007888748999999998524--7315987604
Q gi|254780401|r 52 FVMGGTGKTPTALAIAKAVIDK--NLKPGFLSRG 83 (338)
Q Consensus 52 itvGGtGKTP~v~~l~~~l~~~--g~~~~ilsRG 83 (338)
+.+||||.. =..+++.|.++ |++|..++|.
T Consensus 4 lVtGatG~i--G~~lv~~Ll~~~~g~~V~~l~R~ 35 (287)
T 2jl1_A 4 AVTGATGQL--GGLVIQHLLKKVPASQIIAIVRN 35 (287)
T ss_dssp EETTTTSHH--HHHHHHHHTTTSCGGGEEEEESC
T ss_pred EEECCCCHH--HHHHHHHHHHCCCCCEEEEEECC
T ss_conf 999998589--99999999845999879999789
No 266
>1gwn_A RHO-related GTP-binding protein RHOE; GTPase, inactive GTPase, signal transduction; HET: GTP; 2.1A {Mus musculus} SCOP: c.37.1.8
Probab=45.83 E-value=7.6 Score=18.01 Aligned_cols=23 Identities=26% Similarity=0.359 Sum_probs=17.2
Q ss_pred CCCCEEEECCEEECCCCCCHHHHHHH
Q ss_conf 88988998230007888748999999
Q gi|254780401|r 42 APIPVICVGGFVMGGTGKTPTALAIA 67 (338)
Q Consensus 42 ~~~pVI~VGNitvGGtGKTP~v~~l~ 67 (338)
..+.|+.||+ .|+|||-++..++
T Consensus 27 ~~~KIviiGd---~~vGKTsLi~r~~ 49 (205)
T 1gwn_A 27 VKCKIVVVGD---SQCGKTALLHVFA 49 (205)
T ss_dssp CEEEEEEEES---TTSSHHHHHHHHH
T ss_pred CCEEEEEECC---CCCCHHHHHHHHH
T ss_conf 4479999998---9978999999997
No 267
>3aez_A Pantothenate kinase; transferase, homodimer, COA biosynthesis, nucleotide binding binding, cytoplasm, nucleotide-binding; HET: GDP PAZ; 2.20A {Mycobacterium tuberculosis} PDB: 2ges_A* 2geu_A* 2gev_A* 2zs7_A* 2zs8_A* 2zs9_A* 2zsa_A* 2zsb_A* 2zsd_A* 2zse_A* 2zsf_A* 2get_A* 3af0_A* 3af1_A* 3af2_A* 3af3_A* 3af4_A*
Probab=45.70 E-value=14 Score=16.11 Aligned_cols=41 Identities=17% Similarity=0.263 Sum_probs=28.1
Q ss_pred CCCCCEEEECCEEECCCCCCHHHHHHHHHHHHCC--CCEEEEEE
Q ss_conf 3889889982300078887489999999985247--31598760
Q gi|254780401|r 41 HAPIPVICVGGFVMGGTGKTPTALAIAKAVIDKN--LKPGFLSR 82 (338)
Q Consensus 41 ~~~~pVI~VGNitvGGtGKTP~v~~l~~~l~~~g--~~~~ilsR 82 (338)
..+.|. .||--=.-|+|||-++..|+..|.+.+ .++.++|=
T Consensus 86 ~~~~Pf-IIGIaG~sgSGKST~a~~L~~lL~~~~~~~~v~~is~ 128 (312)
T 3aez_A 86 DRPVPF-IIGVAGSVAVGKSTTARVLQALLARWDHHPRVDLVTT 128 (312)
T ss_dssp SSCCCE-EEEEECCTTSCHHHHHHHHHHHHHTSTTCCCEEEEEG
T ss_pred CCCCCE-EEEEECCCCCCHHHHHHHHHHHHHHHCCCCCEEEEEC
T ss_conf 899988-9998898987899999999999853078996599955
No 268
>2z1m_A GDP-D-mannose dehydratase; short-chain dehydrogenase/reductase, lyase, structural genomics, NPPSFA; HET: NDP GDP; 2.00A {Aquifex aeolicus VF5} PDB: 2z95_A*
Probab=45.69 E-value=14 Score=16.11 Aligned_cols=30 Identities=20% Similarity=0.237 Sum_probs=24.0
Q ss_pred EEECCCCCCHHHHHHHHHHHHCCCCEEEEEEC
Q ss_conf 00078887489999999985247315987604
Q gi|254780401|r 52 FVMGGTGKTPTALAIAKAVIDKNLKPGFLSRG 83 (338)
Q Consensus 52 itvGGtGKTP~v~~l~~~l~~~g~~~~ilsRG 83 (338)
|++|||| =+=.+|++.|.++|++|..+.|.
T Consensus 7 lVTG~tG--fIGs~lv~~Ll~~g~~V~~~dr~ 36 (345)
T 2z1m_A 7 LITGIRG--QDGAYLAKLLLEKGYEVYGADRR 36 (345)
T ss_dssp EEETTTS--HHHHHHHHHHHHTTCEEEEECSC
T ss_pred EEECCCC--HHHHHHHHHHHHCCCEEEEEECC
T ss_conf 9989987--89999999999783989999899
No 269
>3fdi_A Uncharacterized protein; cytidylate kinase like protein, PSI, MCSG, PRK04182 class member, structural genomics; 2.20A {Eubacterium ventriosum atcc 27560}
Probab=45.59 E-value=6.8 Score=18.35 Aligned_cols=25 Identities=24% Similarity=0.255 Sum_probs=18.7
Q ss_pred CCEEEECCEEECCCCCCHHHHHHHHHH
Q ss_conf 988998230007888748999999998
Q gi|254780401|r 44 IPVICVGGFVMGGTGKTPTALAIAKAV 70 (338)
Q Consensus 44 ~pVI~VGNitvGGtGKTP~v~~l~~~l 70 (338)
-+||+|+ =.=|+|||.+...||+.|
T Consensus 6 ~~iI~I~--g~~GsGKstiak~LA~~L 30 (201)
T 3fdi_A 6 QIIIAIG--REFGSGGHLVAKKLAEHY 30 (201)
T ss_dssp CCEEEEE--ECTTSSHHHHHHHHHHHT
T ss_pred CEEEEEC--CCCCCCHHHHHHHHHHHH
T ss_conf 4589866--999998699999999995
No 270
>1p6x_A Thymidine kinase; P-loop, LID, transferase; HET: THM; 2.00A {Equid herpesvirus 4} SCOP: c.37.1.1 PDB: 1p72_A* 1p73_A* 1p75_A*
Probab=45.54 E-value=9.8 Score=17.21 Aligned_cols=31 Identities=23% Similarity=0.351 Sum_probs=21.8
Q ss_pred EEEECCEEECCCCCCHHHHHHHHHHHHCCCCEEEE
Q ss_conf 89982300078887489999999985247315987
Q gi|254780401|r 46 VICVGGFVMGGTGKTPTALAIAKAVIDKNLKPGFL 80 (338)
Q Consensus 46 VI~VGNitvGGtGKTP~v~~l~~~l~~~g~~~~il 80 (338)
|..=||+ |+|||-++..|++.+...+ .+.++
T Consensus 10 I~IEG~i---GsGKTTl~~~L~~~l~~~~-~~~~~ 40 (334)
T 1p6x_A 10 IYLDGVY---GIGKSTTGRVMASAASGGS-PTLYF 40 (334)
T ss_dssp EEEECST---TSSHHHHHHHHHSGGGCSS-CEEEE
T ss_pred EEEECCC---CCCHHHHHHHHHHHHCCCC-CEEEE
T ss_conf 9998887---7889999999999866799-77998
No 271
>1orr_A CDP-tyvelose-2-epimerase; rossmann fold, short-chain dehydrogenase/reductase, isomerase; HET: NAD CDP; 1.50A {Salmonella typhi} SCOP: c.2.1.2
Probab=45.48 E-value=14 Score=16.09 Aligned_cols=28 Identities=14% Similarity=0.290 Sum_probs=23.5
Q ss_pred EEECCCCCCHHHHHHHHHHHHCCCCEEEEE
Q ss_conf 000788874899999999852473159876
Q gi|254780401|r 52 FVMGGTGKTPTALAIAKAVIDKNLKPGFLS 81 (338)
Q Consensus 52 itvGGtGKTP~v~~l~~~l~~~g~~~~ils 81 (338)
|.+|||| -+=.+|++.|.++|++|.++-
T Consensus 5 LVTGgtG--fIG~~lv~~Ll~~g~~V~~~d 32 (347)
T 1orr_A 5 LITGGCG--FLGSNLASFALSQGIDLIVFD 32 (347)
T ss_dssp EEETTTS--HHHHHHHHHHHHTTCEEEEEE
T ss_pred EEECCCC--HHHHHHHHHHHHCCCEEEEEE
T ss_conf 9928874--899999999997839899997
No 272
>2qzj_A Two-component response regulator; 11017X, PSI-II, structural genomics, protein structure initiative; 2.89A {Clostridium difficile 630}
Probab=45.17 E-value=14 Score=16.06 Aligned_cols=26 Identities=8% Similarity=0.213 Sum_probs=13.1
Q ss_pred CCCCCCCHHHHHHHHCCCCCCEEEEC
Q ss_conf 63465201225664102457479971
Q gi|254780401|r 116 VTIVTSDRKIGVQMLLQEGVDIIIMD 141 (338)
Q Consensus 116 pv~V~~~R~~~~~~~~~~~~diiIlD 141 (338)
.|.++.+-.+|...+.+..+|+||+|
T Consensus 30 ~v~~a~~~~eal~~l~~~~~dlillD 55 (136)
T 2qzj_A 30 SIDLAYNCEEAIGKIFSNKYDLIFLE 55 (136)
T ss_dssp EEEEESSHHHHHHHHHHCCCSEEEEE
T ss_pred EEEEECCHHHHHHHHHHCCCCEEEEC
T ss_conf 99998999999998862799999977
No 273
>1in4_A RUVB, holliday junction DNA helicase RUVB; AAA+-class ATPase, winged-helix domain, ATP hydrolysis, walker A, walker B, sensor 1, sensor 2; HET: ADP; 1.60A {Thermotoga maritima} SCOP: a.4.5.11 c.37.1.20 PDB: 1in5_A* 1in6_A* 1in8_A* 1in7_A* 1j7k_A*
Probab=44.95 E-value=7.5 Score=18.06 Aligned_cols=25 Identities=36% Similarity=0.367 Sum_probs=19.0
Q ss_pred CEEEECCEEECCCCCCHHHHHHHHHHHH
Q ss_conf 8899823000788874899999999852
Q gi|254780401|r 45 PVICVGGFVMGGTGKTPTALAIAKAVID 72 (338)
Q Consensus 45 pVI~VGNitvGGtGKTP~v~~l~~~l~~ 72 (338)
.+|-.|.= |||||-++..+|+.+..
T Consensus 53 ~lLf~GPP---GtGKTTlA~iiA~~~~~ 77 (334)
T 1in4_A 53 HVLLAGPP---GLGKTTLAHIIASELQT 77 (334)
T ss_dssp CEEEESST---TSSHHHHHHHHHHHHTC
T ss_pred EEEEECCC---CCCHHHHHHHHHHHCCC
T ss_conf 17988969---98899999999983188
No 274
>1eg7_A Formyltetrahydrofolate synthetase; folate binding, ATP binding, formate binding, monovalent cation binding, ligase; 2.50A {Moorella thermoacetica} SCOP: c.37.1.10 PDB: 1fpm_A 1fp7_A
Probab=44.79 E-value=14 Score=16.02 Aligned_cols=39 Identities=23% Similarity=0.184 Sum_probs=32.1
Q ss_pred CCEEEEC--CEEECCCCCCHHHHHHHHHHHHCCCCEEEEEE
Q ss_conf 9889982--30007888748999999998524731598760
Q gi|254780401|r 44 IPVICVG--GFVMGGTGKTPTALAIAKAVIDKNLKPGFLSR 82 (338)
Q Consensus 44 ~pVI~VG--NitvGGtGKTP~v~~l~~~l~~~g~~~~ilsR 82 (338)
-..|-|- |-|--|-|||-+++-|++-|.+.|++..+-.|
T Consensus 57 gklilVtaitPTp~GEGKtTttiGL~~al~~lg~~~~~~lR 97 (557)
T 1eg7_A 57 GKLILVTAITPTPAGEGKTTTSVGLTDALARLGKRVMVCLR 97 (557)
T ss_dssp CEEEEEEESSCCTTCCCHHHHHHHHHHHHHHTTCCEEEEEC
T ss_pred CEEEEEEECCCCCCCCCCHHHHHHHHHHHHHHCCCEEEEEC
T ss_conf 70899984588887886030799999999870985389950
No 275
>2chq_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATPase, ATP-binding, nucleotide-binding; HET: ANP; 3.5A {Archaeoglobus fulgidus} PDB: 2chv_A
Probab=44.69 E-value=7.6 Score=18.01 Aligned_cols=33 Identities=39% Similarity=0.643 Sum_probs=21.2
Q ss_pred CCCCCCCCEEEECCEEECCCCCCHHHHHHHHHHHHCC
Q ss_conf 6433889889982300078887489999999985247
Q gi|254780401|r 38 QRLHAPIPVICVGGFVMGGTGKTPTALAIAKAVIDKN 74 (338)
Q Consensus 38 ~~~~~~~pVI~VGNitvGGtGKTP~v~~l~~~l~~~g 74 (338)
+..+.|- ++-+|- -|+|||-++..+|+.+....
T Consensus 34 ~~~~~~~-~L~~Gp---~G~GKttla~~la~~l~~~~ 66 (319)
T 2chq_A 34 ERKNIPH-LLFSGP---PGTGKTATAIALARDLFGEN 66 (319)
T ss_dssp TTTCCCC-EEEESS---SSSSHHHHHHHHHHHHHTTC
T ss_pred HCCCCCE-EEEECC---CCCCHHHHHHHHHHHHCCCC
T ss_conf 7799987-998897---99999999999999734456
No 276
>1jl3_A Arsenate reductase; alpha-beta fold, PTP-loop, oxidoreductase; 1.60A {Bacillus subtilis} SCOP: c.44.1.1 PDB: 1z2d_A 1z2e_A 2ipa_B
Probab=44.52 E-value=15 Score=15.99 Aligned_cols=35 Identities=23% Similarity=0.276 Sum_probs=25.2
Q ss_pred CCEEEECCEEECCCCCCHHHHHHHHHHHHCCCCEEEEEECCC
Q ss_conf 988998230007888748999999998524731598760457
Q gi|254780401|r 44 IPVICVGGFVMGGTGKTPTALAIAKAVIDKNLKPGFLSRGYG 85 (338)
Q Consensus 44 ~pVI~VGNitvGGtGKTP~v~~l~~~l~~~g~~~~ilsRGYg 85 (338)
|-.||.||+ .-.|++..+++.+... +..+-|-|..
T Consensus 6 VLFVC~gN~-----cRSpmAEai~~~~~~~--~~~~~Sag~~ 40 (139)
T 1jl3_A 6 IYFLCTGNS-----CRSQMAEGWAKQYLGD--EWKVYSAGIE 40 (139)
T ss_dssp EEEEESSSS-----SHHHHHHHHHHHHSCT--TEEEEEEESS
T ss_pred EEEEECCCC-----HHHHHHHHHHHHHCCC--CEECCCCCCC
T ss_conf 998849982-----7899999999983656--5202677667
No 277
>1sxj_C Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ ATPase, DNA polymerase; HET: ATG ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=44.37 E-value=6 Score=18.74 Aligned_cols=27 Identities=41% Similarity=0.632 Sum_probs=21.2
Q ss_pred EEEECCEEECCCCCCHHHHHHHHHHHHCCC
Q ss_conf 899823000788874899999999852473
Q gi|254780401|r 46 VICVGGFVMGGTGKTPTALAIAKAVIDKNL 75 (338)
Q Consensus 46 VI~VGNitvGGtGKTP~v~~l~~~l~~~g~ 75 (338)
++-.|. -|+|||-++..+|+.+....+
T Consensus 49 lLl~Gp---pG~GKTtla~~la~~~~~~~~ 75 (340)
T 1sxj_C 49 LLFYGP---PGTGKTSTIVALAREIYGKNY 75 (340)
T ss_dssp EEEECS---SSSSHHHHHHHHHHHHHTTSH
T ss_pred EEEECC---CCCCHHHHHHHHHHHHHCCCC
T ss_conf 988895---999999999999998624667
No 278
>2rex_B RHO-related GTP-binding protein RHO6; complex, structural genomics consortium, SGC, GTPase, GNP, plexin, effector domain, alternative splicing; HET: GNP; 2.30A {Homo sapiens} PDB: 2cls_A*
Probab=44.34 E-value=8.9 Score=17.51 Aligned_cols=24 Identities=29% Similarity=0.293 Sum_probs=17.4
Q ss_pred CCCCCEEEECCEEECCCCCCHHHHHHH
Q ss_conf 388988998230007888748999999
Q gi|254780401|r 41 HAPIPVICVGGFVMGGTGKTPTALAIA 67 (338)
Q Consensus 41 ~~~~pVI~VGNitvGGtGKTP~v~~l~ 67 (338)
...+.|+.||+ +|+|||-++..++
T Consensus 8 ~~~~Ki~vvG~---~~vGKTsli~~~~ 31 (197)
T 2rex_B 8 VARCKLVLVGD---VQCGKTAMLQVLA 31 (197)
T ss_dssp --CEEEEEECS---TTSSHHHHHHHHH
T ss_pred CCEEEEEEECC---CCCCHHHHHHHHH
T ss_conf 64169999999---9958899999997
No 279
>1t6n_A Probable ATP-dependent RNA helicase; RECA-like fold, PRE-mRNA processing protein; HET: FLC; 1.94A {Homo sapiens} SCOP: c.37.1.19
Probab=44.24 E-value=15 Score=15.96 Aligned_cols=95 Identities=11% Similarity=0.086 Sum_probs=40.3
Q ss_pred CCCCCCHHHHHHHHHHHHCCCCEEEEEECCCCCCCCCEEEECCCCCHHHHCCHHHHHHHCCC-----CCCCCCHHH-HHH
Q ss_conf 78887489999999985247315987604578777755871456788770421233220576-----346520122-566
Q gi|254780401|r 55 GGTGKTPTALAIAKAVIDKNLKPGFLSRGYGRKSRISFRVDLEKHSAYDVGDEPLLLARRAV-----TIVTSDRKI-GVQ 128 (338)
Q Consensus 55 GGtGKTP~v~~l~~~l~~~g~~~~ilsRGYg~~~~~~~~v~~~~~~~~~vGDEp~lla~~~p-----v~V~~~R~~-~~~ 128 (338)
=||||| ..|+.-.+...... .+ ....+.+.+...-+.++.++-..+....+ ++.+..... -..
T Consensus 60 TGSGKT--lay~lp~~~~~~~~--------~~-~~~~lil~PtreLa~qi~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~ 128 (220)
T 1t6n_A 60 SGMGKT--AVFVLATLQQLEPV--------TG-QVSVLVMCHTRELAFQISKEYERFSKYMPNVKVAVFFGGLSIKKDEE 128 (220)
T ss_dssp TTSCHH--HHHHHHHHHHCCCC--------TT-CCCEEEECSCHHHHHHHHHHHHHHTTTSTTCCEEEESCCSCHHHHHH
T ss_pred CCCCCH--HHHCCCHHHCCCCC--------CC-CCEEEEECCCHHHHHHHHHHHHHHHHHCCCCEEEEEECCCCHHHHHH
T ss_conf 998720--13114112113567--------78-83189937989999999999999983088652688758968899999
Q ss_pred HHCCCCCCEEEEC-----CCCCCCCC-CCEEEEEEECC
Q ss_conf 4102457479971-----83223441-23069999618
Q gi|254780401|r 129 MLLQEGVDIIIMD-----DGFHSADL-QADFSLIVVNS 160 (338)
Q Consensus 129 ~~~~~~~diiIlD-----DGfQh~~l-~rdl~Ivl~d~ 160 (338)
.+.+..+|++|.- |-+....+ -+++..+++|-
T Consensus 129 ~l~~~~~~ilV~TP~~l~~~~~~~~~~l~~l~~lVlDE 166 (220)
T 1t6n_A 129 VLKKNCPHIVVGTPGRILALARNKSLNLKHIKHFILDE 166 (220)
T ss_dssp HHHHSCCSEEEECHHHHHHHHHTTSSCCTTCCEEEEES
T ss_pred HHHCCCCCEEEECCHHHHHHHHCCCCCCCCCCEEEHHH
T ss_conf 99728999899696779999866961366455520278
No 280
>3ber_A Probable ATP-dependent RNA helicase DDX47; DEAD, AMP, structural genomics, structural genomics consortium, SGC, ATP-binding, hydrolase; HET: AMP PGE; 1.40A {Homo sapiens}
Probab=44.19 E-value=15 Score=15.96 Aligned_cols=22 Identities=9% Similarity=0.169 Sum_probs=9.0
Q ss_pred EEECCCCCHHHHCCHHHHHHHC
Q ss_conf 8714567887704212332205
Q gi|254780401|r 93 RVDLEKHSAYDVGDEPLLLARR 114 (338)
Q Consensus 93 ~v~~~~~~~~~vGDEp~lla~~ 114 (338)
.+.+...-+.++-++-..+...
T Consensus 116 il~PtreLa~q~~~~~~~l~~~ 137 (249)
T 3ber_A 116 VLTPTRELAFQISEQFEALGSS 137 (249)
T ss_dssp EECSSHHHHHHHHHHHHHHHGG
T ss_pred EECCCHHHHHHHHHHHHHHCCC
T ss_conf 9777589876666776643036
No 281
>1uf9_A TT1252 protein; P-loop, nucleotide binding domain, structural genomics, riken structural genomics/proteomics initiative, RSGI; HET: ATP; 2.80A {Thermus thermophilus} SCOP: c.37.1.1
Probab=44.15 E-value=7.5 Score=18.03 Aligned_cols=27 Identities=26% Similarity=0.422 Sum_probs=16.0
Q ss_pred CCEE--EECCEEECCCCCCHHHHHHHHHHHHCCCCE
Q ss_conf 9889--982300078887489999999985247315
Q gi|254780401|r 44 IPVI--CVGGFVMGGTGKTPTALAIAKAVIDKNLKP 77 (338)
Q Consensus 44 ~pVI--~VGNitvGGtGKTP~v~~l~~~l~~~g~~~ 77 (338)
-|+| ..|.+ |+|||-+ +++|++.|+.+
T Consensus 7 ~P~iIgItG~~---GSGKsTv----a~~l~~~g~~~ 35 (203)
T 1uf9_A 7 HPIIIGITGNI---GSGKSTV----AALLRSWGYPV 35 (203)
T ss_dssp CCEEEEEEECT---TSCHHHH----HHHHHHTTCCE
T ss_pred CCEEEEEECCC---CCCHHHH----HHHHHHCCCEE
T ss_conf 84899998998---7769999----99999879939
No 282
>2zr9_A Protein RECA, recombinase A; recombination, RECA mutants, DNA-repair, ATP-binding, cytoplasm, DNA damage, DNA recombination; HET: DTP; 2.50A {Mycobacterium smegmatis str} PDB: 2zr0_A* 2zra_A* 2zrb_A 2zrm_A* 1ubc_A* 1ubf_A* 1ubg_A* 1ube_A* 2g88_A* 2odw_A* 2oe2_A 2oep_A* 2oes_A 2ofo_A 2zr7_A 2odn_A* 2zrn_A 2zro_A* 2zrp_A* 2zre_A* ...
Probab=44.04 E-value=14 Score=16.08 Aligned_cols=42 Identities=31% Similarity=0.459 Sum_probs=29.6
Q ss_pred CCCCCCCEEEEC-----------CEEEC---------CCCCCHHHHHHHHHHHHCCCCEEEE
Q ss_conf 433889889982-----------30007---------8887489999999985247315987
Q gi|254780401|r 39 RLHAPIPVICVG-----------GFVMG---------GTGKTPTALAIAKAVIDKNLKPGFL 80 (338)
Q Consensus 39 ~~~~~~pVI~VG-----------NitvG---------GtGKTP~v~~l~~~l~~~g~~~~il 80 (338)
....++++|+-| -+..| |||||-+++.++...++.|..++.+
T Consensus 34 ~~~~~~~~i~tG~~~lD~~lg~GG~p~g~i~ei~G~~~sGKT~~al~~~~~~q~~g~~~~~i 95 (349)
T 2zr9_A 34 EVRQPISVIPTGSISLDVALGIGGLPRGRVIEIYGPESSGKTTVALHAVANAQAAGGIAAFI 95 (349)
T ss_dssp CCCCCCCEECCSCHHHHHHTSSSSEETTSEEEEEESTTSSHHHHHHHHHHHHHHTTCCEEEE
T ss_pred CCCCCCCEECCCCHHHHHHHCCCCCCCCEEEEEECCCCCCHHHHHHHHHHHHHCCCCEEEEE
T ss_conf 66777765767878999987579946880899989876668999999999763589879999
No 283
>1lvg_A Guanylate kinase, GMP kinase; transferase; HET: ADP 5GP; 2.10A {Mus musculus} SCOP: c.37.1.1
Probab=43.99 E-value=14 Score=16.21 Aligned_cols=26 Identities=27% Similarity=0.396 Sum_probs=20.5
Q ss_pred CCCEEEECCEEECCCCCCHHHHHHHHHHH
Q ss_conf 89889982300078887489999999985
Q gi|254780401|r 43 PIPVICVGGFVMGGTGKTPTALAIAKAVI 71 (338)
Q Consensus 43 ~~pVI~VGNitvGGtGKTP~v~~l~~~l~ 71 (338)
|-|||.+|-- |+|||-++..|++.+-
T Consensus 4 pr~Ivi~Gps---GsGK~Tl~~~L~~~~~ 29 (198)
T 1lvg_A 4 PRPVVLSGPS---GAGKSTLLKKLFQEHS 29 (198)
T ss_dssp -CCEEEECCT---TSSHHHHHHHHHHHHT
T ss_pred CCEEEEECCC---CCCHHHHHHHHHHHCC
T ss_conf 7389999999---9999999999998589
No 284
>2pia_A Phthalate dioxygenase reductase; HET: FMN; 2.00A {Burkholderia cepacia} SCOP: b.43.4.2 c.25.1.2 d.15.4.2
Probab=43.98 E-value=11 Score=16.99 Aligned_cols=34 Identities=26% Similarity=0.347 Sum_probs=19.0
Q ss_pred EEECCCCCCHHHHHHHHHHHHCCCCEEEEEECCCCCC
Q ss_conf 0007888748999999998524731598760457877
Q gi|254780401|r 52 FVMGGTGKTPTALAIAKAVIDKNLKPGFLSRGYGRKS 88 (338)
Q Consensus 52 itvGGtGKTP~v~~l~~~l~~~g~~~~ilsRGYg~~~ 88 (338)
+.+||+|=||+.-.+-. |.+.|.+...+- |+.++
T Consensus 116 liAgG~GITP~~sml~~-l~~~~~~~v~l~--y~~r~ 149 (321)
T 2pia_A 116 LVAGGIGITPMLSMARQ-LRAEGLRSFRLY--YLTRD 149 (321)
T ss_dssp EEEEGGGHHHHHHHHHH-HHHHCSSEEEEE--EEESC
T ss_pred EEECCCCCCHHHHHHHH-HHHHCCCCCEEE--EECCC
T ss_conf 99268656739999999-987213672356--50599
No 285
>2xbl_A Phosphoheptose isomerase; capsule; HET: M7P PGE PG4; 1.62A {Burkholderia pseudomallei} PDB: 2x3y_A
Probab=43.85 E-value=15 Score=15.92 Aligned_cols=17 Identities=6% Similarity=0.046 Sum_probs=7.9
Q ss_pred HHHHHHHCCCCCCEEEE
Q ss_conf 22566410245747997
Q gi|254780401|r 124 KIGVQMLLQEGVDIIIM 140 (338)
Q Consensus 124 ~~~~~~~~~~~~diiIl 140 (338)
.++++++.+.+..+|-+
T Consensus 133 i~a~~~Ak~~g~~~iai 149 (198)
T 2xbl_A 133 LAAFREAKAKGMTCVGF 149 (198)
T ss_dssp HHHHHHHHHTTCEEEEE
T ss_pred HHHHHHHHHCCCEEEEE
T ss_conf 99999999859989999
No 286
>3iij_A Coilin-interacting nuclear ATPase protein; alpha and beta proteins (A/B), protein binding, transferase, phosphotransferase; HET: ADP; 1.76A {Homo sapiens} PDB: 3iik_A 3iil_A* 3iim_A* 1rkb_A
Probab=43.82 E-value=7.9 Score=17.88 Aligned_cols=26 Identities=27% Similarity=0.391 Sum_probs=18.3
Q ss_pred CCCCE-EEECCEEECCCCCCHHHHHHHHHH
Q ss_conf 88988-998230007888748999999998
Q gi|254780401|r 42 APIPV-ICVGGFVMGGTGKTPTALAIAKAV 70 (338)
Q Consensus 42 ~~~pV-I~VGNitvGGtGKTP~v~~l~~~l 70 (338)
...|- +.+|. -|+|||-+...|++.|
T Consensus 9 ~~~pnI~i~G~---pG~GKTTiak~La~~l 35 (180)
T 3iij_A 9 MLLPNILLTGT---PGVGKTTLGKELASKS 35 (180)
T ss_dssp CCCCCEEEECS---TTSSHHHHHHHHHHHH
T ss_pred HCCCCEEEECC---CCCCHHHHHHHHHHHH
T ss_conf 60895799899---9988899999999996
No 287
>2a9o_A Response regulator; essential protein, YYCF/YYCG homolog, signaling protein; 1.65A {Streptococcus pneumoniae} SCOP: c.23.1.1 PDB: 1nxo_A 1nxs_A 1nxv_A 1nxw_A 1nxx_A 1nxp_A 2a9p_A 2a9q_A 1nxt_A* 2a9r_A*
Probab=43.54 E-value=15 Score=15.89 Aligned_cols=26 Identities=23% Similarity=0.350 Sum_probs=15.0
Q ss_pred CCCCCCCHHHHHHHHCCCCCCEEEEC
Q ss_conf 63465201225664102457479971
Q gi|254780401|r 116 VTIVTSDRKIGVQMLLQEGVDIIIMD 141 (338)
Q Consensus 116 pv~V~~~R~~~~~~~~~~~~diiIlD 141 (338)
-|..+.+-.+|...+.+..+|+||+|
T Consensus 27 ~v~~a~~g~~al~~l~~~~~dliilD 52 (120)
T 2a9o_A 27 EVVTAFNGREALEQFEAEQPDIIILD 52 (120)
T ss_dssp EEEEESSHHHHHHHHHHHCCSEEEEC
T ss_pred EEEEECCHHHHHHHHHHCCCCEEEEC
T ss_conf 99998999999999985799899982
No 288
>1qsg_A Enoyl-[acyl-carrier-protein] reductase; enoyl reductase, oxidoreductase; HET: GLC NAD TCL; 1.75A {Escherichia coli} SCOP: c.2.1.2 PDB: 1c14_A* 1i2z_A* 1i30_A* 1lx6_A* 1lxc_A* 1mfp_A* 2fhs_A 1qg6_A* 1dfg_A* 1dfh_A* 1d8a_A* 1dfi_A*
Probab=43.51 E-value=15 Score=15.89 Aligned_cols=32 Identities=25% Similarity=0.299 Sum_probs=24.9
Q ss_pred EEECCCCCCHHHHHHHHHHHHCCCCEEEEEEC
Q ss_conf 00078887489999999985247315987604
Q gi|254780401|r 52 FVMGGTGKTPTALAIAKAVIDKNLKPGFLSRG 83 (338)
Q Consensus 52 itvGGtGKTP~v~~l~~~l~~~g~~~~ilsRG 83 (338)
|.+||++..=.-..+++.|.+.|.+|++..|.
T Consensus 13 lITGass~~GIG~aia~~la~~Ga~V~i~~r~ 44 (265)
T 1qsg_A 13 LVTGVASKLSIAYGIAQAMHREGAELAFTYQN 44 (265)
T ss_dssp EECCCCSTTSHHHHHHHHHHHTTCEEEEEESS
T ss_pred EEECCCCCHHHHHHHHHHHHHCCCEEEEEECC
T ss_conf 99899985018999999999869999999588
No 289
>1u7z_A Coenzyme A biosynthesis bifunctional protein coabc; ligase; HET: PMT; 2.30A {Escherichia coli} SCOP: c.72.3.1 PDB: 1u7w_A* 1u7u_A* 1u80_A*
Probab=43.49 E-value=15 Score=15.88 Aligned_cols=34 Identities=29% Similarity=0.411 Sum_probs=26.8
Q ss_pred CEEEECCEEECCCCCCHHHHHHHHHHHHCCCCEEEEEECC
Q ss_conf 8899823000788874899999999852473159876045
Q gi|254780401|r 45 PVICVGGFVMGGTGKTPTALAIAKAVIDKNLKPGFLSRGY 84 (338)
Q Consensus 45 pVI~VGNitvGGtGKTP~v~~l~~~l~~~g~~~~ilsRGY 84 (338)
||=.|+|-+.|-+| .+||+.+..+|.+|..++ |.
T Consensus 24 ~VR~ItN~SSGk~G-----~~iA~~~~~~Ga~V~li~-g~ 57 (226)
T 1u7z_A 24 PVRYISDHSSGKMG-----FAIAAAAARRGANVTLVS-GP 57 (226)
T ss_dssp SSEEEEECCCSHHH-----HHHHHHHHHTTCEEEEEE-CS
T ss_pred CCCEECCCCCHHHH-----HHHHHHHHHCCCEEEEEE-EC
T ss_conf 71363637821999-----999868987898899997-13
No 290
>1e2k_A Thymidine kinase; transferase, antiviral drug, enzyme-prodrug gene therapy, sugar ring pucker; HET: TMC; 1.7A {Herpes simplex virus} SCOP: c.37.1.1 PDB: 1e2i_A* 1e2h_A* 1e2m_A* 1e2n_A* 1e2p_A* 1ki2_A* 1ki3_A* 1ki4_A* 1ki6_B* 1ki7_A* 1ki8_A* 2ki5_A* 1kim_A* 1qhi_A* 1p7c_A* 1vtk_A* 2vtk_A* 3vtk_A* 3f0t_A* 1e2l_A* ...
Probab=43.44 E-value=6.5 Score=18.48 Aligned_cols=24 Identities=25% Similarity=0.255 Sum_probs=18.7
Q ss_pred EECCEEECCCCCCHHHHHHHHHHHHCC
Q ss_conf 982300078887489999999985247
Q gi|254780401|r 48 CVGGFVMGGTGKTPTALAIAKAVIDKN 74 (338)
Q Consensus 48 ~VGNitvGGtGKTP~v~~l~~~l~~~g 74 (338)
.-||+ |+|||-++..|++.+...+
T Consensus 9 IEG~i---GsGKSTl~~~L~~~l~~~~ 32 (331)
T 1e2k_A 9 IDGPH---GMGKTTTTQLLVALGSRDD 32 (331)
T ss_dssp ECSCT---TSSHHHHHHHHTC----CC
T ss_pred EECCC---CCCHHHHHHHHHHHHCCCC
T ss_conf 98986---6889999999999845598
No 291
>2pk3_A GDP-6-deoxy-D-LYXO-4-hexulose reductase; SDR, short-chain dehydrogenase/reductase, rossmann fold, oxidoreductase; HET: A2R GDD; 1.82A {Aneurinibacillus thermoaerophilus}
Probab=43.43 E-value=15 Score=15.88 Aligned_cols=37 Identities=19% Similarity=0.126 Sum_probs=28.7
Q ss_pred EEECCCCCCHHHHHHHHHHHHCCCCEEEEEECCCCCCCC
Q ss_conf 000788874899999999852473159876045787777
Q gi|254780401|r 52 FVMGGTGKTPTALAIAKAVIDKNLKPGFLSRGYGRKSRI 90 (338)
Q Consensus 52 itvGGtGKTP~v~~l~~~l~~~g~~~~ilsRGYg~~~~~ 90 (338)
|++||||-. =.+|++.|.++|++|..++|.-..+..+
T Consensus 16 LVtGatGfI--G~~l~~~Ll~~g~~V~~~~r~~~~~~~~ 52 (321)
T 2pk3_A 16 LITGVAGFV--GKYLANHLTEQNVEVFGTSRNNEAKLPN 52 (321)
T ss_dssp EEETTTSHH--HHHHHHHHHHTTCEEEEEESCTTCCCTT
T ss_pred EEECCCCHH--HHHHHHHHHHCCCEEEEEECCCCCCCCC
T ss_conf 996788889--9999999998849899980887124689
No 292
>2fuk_A XC6422 protein; A/B hydrolase, structural genomics, X-RAY diffraction; 1.60A {Xanthomonas campestris} SCOP: c.69.1.36
Probab=43.35 E-value=15 Score=15.87 Aligned_cols=43 Identities=16% Similarity=0.213 Sum_probs=34.0
Q ss_pred EEEECCEEECCCCCCHHHHHHHHHHHHCCCCEEEE-EECCCCCC
Q ss_conf 89982300078887489999999985247315987-60457877
Q gi|254780401|r 46 VICVGGFVMGGTGKTPTALAIAKAVIDKNLKPGFL-SRGYGRKS 88 (338)
Q Consensus 46 VI~VGNitvGGtGKTP~v~~l~~~l~~~g~~~~il-sRGYg~~~ 88 (338)
|+|-++=..||+=-.|.+..+++.|.++||.+... .||+|++.
T Consensus 41 v~~Hph~~~Gg~~~~~~~~~lA~~l~~~G~~vl~fd~rG~G~S~ 84 (220)
T 2fuk_A 41 IVCHPLSTEGGSMHNKVVTMAARALRELGITVVRFNFRSVGTSA 84 (220)
T ss_dssp EEECSCTTTTCSTTCHHHHHHHHHHHTTTCEEEEECCTTSTTCC
T ss_pred EEECCCCCCCCCCCCHHHHHHHHHHHHCCCEEEEEECCCCCCCC
T ss_conf 99689998788899879999999999789989996288868878
No 293
>1u94_A RECA protein, recombinase A; homologous recombination, ATPase, DNA repair, DNA binding protein; 1.90A {Escherichia coli} SCOP: c.37.1.11 d.48.1.1 PDB: 1u98_A 1u99_A 1xms_A* 1xmv_A* 2rec_A 2reb_A 1n03_A* 1rea_A 1aa3_A
Probab=43.23 E-value=15 Score=15.94 Aligned_cols=43 Identities=23% Similarity=0.370 Sum_probs=31.1
Q ss_pred CCCCCCCEEEECC-----------EEEC---------CCCCCHHHHHHHHHHHHCCCCEEEEE
Q ss_conf 4338898899823-----------0007---------88874899999999852473159876
Q gi|254780401|r 39 RLHAPIPVICVGG-----------FVMG---------GTGKTPTALAIAKAVIDKNLKPGFLS 81 (338)
Q Consensus 39 ~~~~~~pVI~VGN-----------itvG---------GtGKTP~v~~l~~~l~~~g~~~~ils 81 (338)
....++++|+-|. +..| ++|||-+++.++...++.|..++.+-
T Consensus 36 ~~~~~i~~i~TG~~~lD~~lg~GG~p~g~i~ei~G~~~sGKTt~al~~~a~~q~~g~~~~~iD 98 (356)
T 1u94_A 36 DRSMDVETISTGSLSLDIALGAGGLPMGRIVEIYGPESSGKTTLTLQVIAAAQREGKTCAFID 98 (356)
T ss_dssp CCBCCCCEECCSCHHHHHHTSSSSEETTSEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEE
T ss_pred CCCCCCEEECCCCHHHHHHHCCCCCCCCEEEEEECCCCCCHHHHHHHHHHHHHCCCCEEEEEC
T ss_conf 777886057069789999875899778708999898655688999999999861698799985
No 294
>3a00_A Guanylate kinase, GMP kinase; domain movement, dimerization, acetylation, ATP-binding, nucleotide-binding, phosphoprotein, transferase; 1.80A {Saccharomyces cerevisiae} PDB: 1ex6_A* 1ex7_A 1gky_A* 2zzz_A 2zzy_A
Probab=43.22 E-value=13 Score=16.40 Aligned_cols=37 Identities=22% Similarity=0.275 Sum_probs=23.2
Q ss_pred CCEEEECCEEECCCCCCHHHHHHHHHHHHC-CCCEEEEEEC
Q ss_conf 988998230007888748999999998524-7315987604
Q gi|254780401|r 44 IPVICVGGFVMGGTGKTPTALAIAKAVIDK-NLKPGFLSRG 83 (338)
Q Consensus 44 ~pVI~VGNitvGGtGKTP~v~~l~~~l~~~-g~~~~ilsRG 83 (338)
-|||.+|-- |+|||.+.-.|++.+... .+-+..-+|.
T Consensus 2 r~Ivl~Gps---GsGK~Tl~~~L~~~~~~~~~~~~~~TtR~ 39 (186)
T 3a00_A 2 RPIVISGPS---GTGKSTLLKKLFAEYPDSFGFSVSSTTRT 39 (186)
T ss_dssp CCEEEESSS---SSSHHHHHHHHHHHCGGGEECCCEEECSC
T ss_pred CEEEEECCC---CCCHHHHHHHHHHHCCCCEEEEEEEECCC
T ss_conf 779998999---99989999999974887757647885558
No 295
>2rhm_A Putative kinase; ZP_00765535.1, structural genomics, joint center for structural genomics, JCSG, protein structure initiative; HET: MSE; 1.70A {Chloroflexus aurantiacus j-10-fl}
Probab=43.22 E-value=8.2 Score=17.78 Aligned_cols=22 Identities=36% Similarity=0.520 Sum_probs=16.5
Q ss_pred EEEECCEEECCCCCCHHHHHHHHHH
Q ss_conf 8998230007888748999999998
Q gi|254780401|r 46 VICVGGFVMGGTGKTPTALAIAKAV 70 (338)
Q Consensus 46 VI~VGNitvGGtGKTP~v~~l~~~l 70 (338)
|+.+|. =|+|||-++..|++.+
T Consensus 8 I~i~G~---~GsGKTTla~~La~~~ 29 (193)
T 2rhm_A 8 IIVTGH---PATGKTTLSQALATGL 29 (193)
T ss_dssp EEEEES---TTSSHHHHHHHHHHHH
T ss_pred EEEECC---CCCCHHHHHHHHHHHH
T ss_conf 999868---9999799999999996
No 296
>2p65_A Hypothetical protein PF08_0063; CLPB, malaria, structural genomics, structural genomics consortium, SGC, unknown function; 1.70A {Plasmodium falciparum}
Probab=43.18 E-value=15 Score=15.89 Aligned_cols=28 Identities=25% Similarity=0.313 Sum_probs=21.4
Q ss_pred CCCEEEECCEEECCCCCCHHHHHHHHHHHHC
Q ss_conf 8988998230007888748999999998524
Q gi|254780401|r 43 PIPVICVGGFVMGGTGKTPTALAIAKAVIDK 73 (338)
Q Consensus 43 ~~pVI~VGNitvGGtGKTP~v~~l~~~l~~~ 73 (338)
.-.+|-||+- |+|||-+|..||+.+.+.
T Consensus 43 k~n~lLVGep---GVGKTaiV~~la~ri~~~ 70 (187)
T 2p65_A 43 KNNPILLGDP---GVGKTAIVEGLAIKIVQG 70 (187)
T ss_dssp SCEEEEESCG---GGCHHHHHHHHHHHHHTT
T ss_pred CCCCEEECCC---CCCHHHHHHHHHHHHHCC
T ss_conf 8996685588---736799999999999808
No 297
>2pzm_A Putative nucleotide sugar epimerase/ dehydratase; rossman fold, protein-NAD complex, protein-nucleotide complex; HET: NAD UDP; 2.00A {Bordetella bronchiseptica} PDB: 2pzl_A* 2pzk_A*
Probab=43.09 E-value=15 Score=15.84 Aligned_cols=31 Identities=10% Similarity=0.124 Sum_probs=24.7
Q ss_pred EEECCCCCCHHHHHHHHHHHHCCCCEEEEEECC
Q ss_conf 000788874899999999852473159876045
Q gi|254780401|r 52 FVMGGTGKTPTALAIAKAVIDKNLKPGFLSRGY 84 (338)
Q Consensus 52 itvGGtGKTP~v~~l~~~l~~~g~~~~ilsRGY 84 (338)
|++||||- +=.+|++.|.++|+.|.++.|-.
T Consensus 24 LVTGgtGf--iG~~lv~~Ll~~G~~V~~~d~~~ 54 (330)
T 2pzm_A 24 LITGGAGC--LGSNLIEHWLPQGHEILVIDNFA 54 (330)
T ss_dssp EEETTTSH--HHHHHHHHHGGGTCEEEEEECCS
T ss_pred EEECCCCH--HHHHHHHHHHHCCCEEEEEECCC
T ss_conf 99898778--99999999997869899997888
No 298
>2qz4_A Paraplegin; AAA+, SPG7, protease, ADP, structural genomics, structural genomics consortium, SGC, ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.22A {Homo sapiens}
Probab=43.05 E-value=8.3 Score=17.75 Aligned_cols=34 Identities=26% Similarity=0.287 Sum_probs=24.0
Q ss_pred CCCCEEEECCEEECCCCCCHHHHHHHHHHHHCCCCEEEEE
Q ss_conf 8898899823000788874899999999852473159876
Q gi|254780401|r 42 APIPVICVGGFVMGGTGKTPTALAIAKAVIDKNLKPGFLS 81 (338)
Q Consensus 42 ~~~pVI~VGNitvGGtGKTP~v~~l~~~l~~~g~~~~ils 81 (338)
.|--|+..|- =|||||=++.++++.+ |.....++
T Consensus 38 ~~~gvLL~Gp---pGtGKT~la~aia~~~---~~~~~~v~ 71 (262)
T 2qz4_A 38 VPKGALLLGP---PGCGKTLLAKAVATEA---QVPFLAMA 71 (262)
T ss_dssp CCCEEEEESC---TTSSHHHHHHHHHHHH---TCCEEEEE
T ss_pred CCCEEEEECC---CCCCHHHHHHHHHHCC---CCCEEEEE
T ss_conf 9972688689---9898647999997335---98669988
No 299
>1ep3_B Dihydroorotate dehydrogenase B (PYRK subunit); heterotetramer, alpha-beta barrel, beta sandwich, FAD domain, alpha/beta NADP domain; HET: FMN FAD; 2.10A {Lactococcus lactis} SCOP: b.43.4.2 c.25.1.3 PDB: 1ep1_B* 1ep2_B*
Probab=43.02 E-value=13 Score=16.42 Aligned_cols=16 Identities=6% Similarity=-0.078 Sum_probs=7.9
Q ss_pred CCHHHHHHHHHHHHHH
Q ss_conf 7878999999999999
Q gi|254780401|r 313 ENPDDLTNLVEMTVVS 328 (338)
Q Consensus 313 ~~~~~l~~~l~~~i~~ 328 (338)
-.+..+.+.+.+...+
T Consensus 197 CGP~~m~~av~~~~~~ 212 (262)
T 1ep3_B 197 CGAPAMLKAVAKKYDQ 212 (262)
T ss_dssp ESCHHHHHHHHHHTTT
T ss_pred ECCHHHHHHHHHHHHH
T ss_conf 3949999999998864
No 300
>2jaq_A Deoxyguanosine kinase; transferase, deoxyribonucleoside kinase; HET: DCP; 2.3A {Mycoplasma mycoides subsp} PDB: 2jat_A* 2jas_A*
Probab=42.95 E-value=8.2 Score=17.77 Aligned_cols=17 Identities=29% Similarity=0.389 Sum_probs=15.1
Q ss_pred CCCCCCHHHHHHHHHHH
Q ss_conf 78887489999999985
Q gi|254780401|r 55 GGTGKTPTALAIAKAVI 71 (338)
Q Consensus 55 GGtGKTP~v~~l~~~l~ 71 (338)
-|+|||-++-.|++.|.
T Consensus 9 ~GsGKST~~k~L~~~l~ 25 (205)
T 2jaq_A 9 VGAGKSTISAEISKKLG 25 (205)
T ss_dssp TTSCHHHHHHHHHHHHC
T ss_pred CCCCHHHHHHHHHHHHC
T ss_conf 98789999999999849
No 301
>1z6t_A APAF-1, apoptotic protease activating factor 1; caspase activation, ADP, nucleotide binding, CARD, apoptosis; HET: ADP; 2.21A {Homo sapiens}
Probab=42.79 E-value=7.1 Score=18.22 Aligned_cols=16 Identities=31% Similarity=0.397 Sum_probs=12.6
Q ss_pred EECCCCCCHHHHHHHH
Q ss_conf 0078887489999999
Q gi|254780401|r 53 VMGGTGKTPTALAIAK 68 (338)
Q Consensus 53 tvGGtGKTP~v~~l~~ 68 (338)
=+||.|||-++..+++
T Consensus 154 G~gG~GKTtLA~~~~~ 169 (591)
T 1z6t_A 154 GMAGCGKSVLAAEAVR 169 (591)
T ss_dssp CCTTSSHHHHHHHHHC
T ss_pred CCCCCCHHHHHHHHHH
T ss_conf 9997768999999996
No 302
>2chg_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATPase, ATP-binding, nucleotide-binding; HET: ANP; 2.1A {Archaeoglobus fulgidus}
Probab=42.74 E-value=8.6 Score=17.61 Aligned_cols=20 Identities=50% Similarity=0.762 Sum_probs=16.8
Q ss_pred CCCCCCHHHHHHHHHHHHCC
Q ss_conf 78887489999999985247
Q gi|254780401|r 55 GGTGKTPTALAIAKAVIDKN 74 (338)
Q Consensus 55 GGtGKTP~v~~l~~~l~~~g 74 (338)
-|+|||-++..+++.+....
T Consensus 47 ~G~GKTtla~~iak~l~~~~ 66 (226)
T 2chg_A 47 PGTGKTATAIALARDLFGEN 66 (226)
T ss_dssp TTSSHHHHHHHHHHHHHGGG
T ss_pred CCCCHHHHHHHHHHHHHCCC
T ss_conf 99988999999999984355
No 303
>2gci_A Probable alpha-methylacyl-COA racemase MCR; COA transferase, proton transfer, coenzyme A, isomerase; HET: MRR; 1.60A {Mycobacterium tuberculosis} SCOP: c.123.1.1 PDB: 2gce_A* 1x74_A* 2gd0_A* 2gd2_A* 2gd6_A*
Probab=42.72 E-value=13 Score=16.31 Aligned_cols=32 Identities=19% Similarity=0.116 Sum_probs=19.6
Q ss_pred CCCEEEECCEEECCCCCCHHHHHHHHHHHHCCCCEEEEEE
Q ss_conf 8988998230007888748999999998524731598760
Q gi|254780401|r 43 PIPVICVGGFVMGGTGKTPTALAIAKAVIDKNLKPGFLSR 82 (338)
Q Consensus 43 ~~pVI~VGNitvGGtGKTP~v~~l~~~l~~~g~~~~ilsR 82 (338)
.+.||-.+....|. +..+.|-+.|-.|.=|-+
T Consensus 7 GirVldl~~~~agp--------~a~~~lad~GA~VikvE~ 38 (360)
T 2gci_A 7 GLRVVELAGIGPGP--------HAAMILGDLGADVVRIDR 38 (360)
T ss_dssp TCEEEEECCSTHHH--------HHHHHHHHTTCEEEEEEC
T ss_pred CCEEEECCCCHHHH--------HHHHHHHHHCCEEEEECC
T ss_conf 99899857820899--------999999982997999899
No 304
>3kb2_A SPBC2 prophage-derived uncharacterized protein YORR; alpha-beta protein., structural genomics, PSI-2, protein structure initiative; HET: G3D; 2.20A {Bacillus subtilis} PDB: 2axp_A*
Probab=42.62 E-value=8.5 Score=17.64 Aligned_cols=17 Identities=18% Similarity=0.096 Sum_probs=15.1
Q ss_pred CCCCCCHHHHHHHHHHH
Q ss_conf 78887489999999985
Q gi|254780401|r 55 GGTGKTPTALAIAKAVI 71 (338)
Q Consensus 55 GGtGKTP~v~~l~~~l~ 71 (338)
-|+|||-++..||+.|.
T Consensus 10 ~GsGKSTva~~La~~L~ 26 (173)
T 3kb2_A 10 DCCFKSTVAAKLSKELK 26 (173)
T ss_dssp SSSSHHHHHHHHHHHHC
T ss_pred CCCCHHHHHHHHHHHHC
T ss_conf 99999999999999969
No 305
>2qp9_X Vacuolar protein sorting-associated protein 4; ATPase domain, beta domain, C-terminal helix, ATP-binding, endosome, nucleotide-binding; 2.90A {Saccharomyces cerevisiae} PDB: 2qpa_A*
Probab=42.53 E-value=8.4 Score=17.69 Aligned_cols=28 Identities=29% Similarity=0.310 Sum_probs=20.8
Q ss_pred CCCCCEEEECCEEECCCCCCHHHHHHHHHHH
Q ss_conf 3889889982300078887489999999985
Q gi|254780401|r 41 HAPIPVICVGGFVMGGTGKTPTALAIAKAVI 71 (338)
Q Consensus 41 ~~~~pVI~VGNitvGGtGKTP~v~~l~~~l~ 71 (338)
.+|--|+..|- =|||||-++.++|+.+.
T Consensus 82 ~p~~giLL~GP---pGtGKT~la~aiA~e~~ 109 (355)
T 2qp9_X 82 KPTSGILLYGP---PGTGKSYLAKAVATEAN 109 (355)
T ss_dssp CCCCCEEEECS---TTSCHHHHHHHHHHHHT
T ss_pred CCCCEEEEECC---CCCCHHHHHHHHHHHCC
T ss_conf 99962688799---99988999999998608
No 306
>1d2n_A N-ethylmaleimide-sensitive fusion protein; hexamerization domain, ATPase, transport; HET: ANP; 1.75A {Cricetulus griseus} SCOP: c.37.1.20 PDB: 1nsf_A*
Probab=42.41 E-value=8.6 Score=17.64 Aligned_cols=24 Identities=33% Similarity=0.367 Sum_probs=18.4
Q ss_pred CCEEEECCEEECCCCCCHHHHHHHHHH
Q ss_conf 988998230007888748999999998
Q gi|254780401|r 44 IPVICVGGFVMGGTGKTPTALAIAKAV 70 (338)
Q Consensus 44 ~pVI~VGNitvGGtGKTP~v~~l~~~l 70 (338)
.-|+-.|.- |||||-++.++|+.+
T Consensus 65 ~~vLL~Gpp---GtGKT~la~~iA~~~ 88 (272)
T 1d2n_A 65 VSVLLEGPP---HSGKTALAAKIAEES 88 (272)
T ss_dssp EEEEEECST---TSSHHHHHHHHHHHH
T ss_pred CEEEEECCC---CCCHHHHHHHHHHHH
T ss_conf 369988979---998999999999997
No 307
>3lu1_A WBGU; rossman fold, epimerase, lipopolysaccharide, glycan, NADH, U glcnac, isomerase; HET: NAD UD2; 2.50A {Plesiomonas shigelloides}
Probab=42.25 E-value=16 Score=15.76 Aligned_cols=31 Identities=13% Similarity=0.016 Sum_probs=24.2
Q ss_pred EEECCCCCCHHHHHHHHHHHHCCCCEEEEEECC
Q ss_conf 000788874899999999852473159876045
Q gi|254780401|r 52 FVMGGTGKTPTALAIAKAVIDKNLKPGFLSRGY 84 (338)
Q Consensus 52 itvGGtGKTP~v~~l~~~l~~~g~~~~ilsRGY 84 (338)
|++||||= +=-+|++.|.++|++|.++.|-.
T Consensus 42 LVTGgtGf--IGs~lv~~L~~~g~~V~~~d~~~ 72 (364)
T 3lu1_A 42 LITGVAGF--IGSNLLEKLLKLNQVVIGLDNFS 72 (364)
T ss_dssp EEETTTSH--HHHHHHHHHHTTTCEEEEEECSS
T ss_pred EEECCCCH--HHHHHHHHHHHCCCEEEEEECCC
T ss_conf 99688758--99999999997889899997898
No 308
>3gr6_A Enoyl-[acyl-carrier-protein] reductase [NADH]; enoyl reductase, NADP, triclosan, oxidoreductase; HET: NAP TCL; 2.28A {Staphylococcus aureus} PDB: 3gns_A* 3gnt_A
Probab=42.11 E-value=16 Score=15.74 Aligned_cols=32 Identities=28% Similarity=0.294 Sum_probs=26.1
Q ss_pred EEECCCCCCHHHHHHHHHHHHCCCCEEEEEEC
Q ss_conf 00078887489999999985247315987604
Q gi|254780401|r 52 FVMGGTGKTPTALAIAKAVIDKNLKPGFLSRG 83 (338)
Q Consensus 52 itvGGtGKTP~v~~l~~~l~~~g~~~~ilsRG 83 (338)
|.+||+|-.=+=..+|+.|.+.|++|.+..|.
T Consensus 14 lItGaas~~GIG~aiA~~la~~G~~V~i~~r~ 45 (260)
T 3gr6_A 14 VIMGIANKRSIAFGVAKVLDQLGAKLVFTYRK 45 (260)
T ss_dssp EEECCCSTTCHHHHHHHHHHHTTCEEEEEESS
T ss_pred EEECCCCCCHHHHHHHHHHHHCCCEEEEEECC
T ss_conf 99899998479999999999879999999688
No 309
>1ye8_A Protein THEP1, hypothetical UPF0334 kinase-like protein AQ_1292; mixed alpha-beta protein, rossman fold, signaling protein, transferase; 1.40A {Aquifex aeolicus} SCOP: c.37.1.11
Probab=42.08 E-value=13 Score=16.45 Aligned_cols=19 Identities=26% Similarity=0.333 Sum_probs=16.7
Q ss_pred CCCCCCHHHHHHHHHHHHC
Q ss_conf 7888748999999998524
Q gi|254780401|r 55 GGTGKTPTALAIAKAVIDK 73 (338)
Q Consensus 55 GGtGKTP~v~~l~~~l~~~ 73 (338)
-|||||-+.-.++..+...
T Consensus 9 ~GsGKTTLlk~ia~~l~~~ 27 (178)
T 1ye8_A 9 PGVGKTTLVKKIVERLGKR 27 (178)
T ss_dssp TTSSHHHHHHHHHHHHGGG
T ss_pred CCCCHHHHHHHHHHHCCCC
T ss_conf 9970999999999741878
No 310
>2bka_A CC3, TAT-interacting protein TIP30; NADPH, PEG600, transcription; HET: NDP PE8; 1.7A {Homo sapiens} SCOP: c.2.1.2 PDB: 2fmu_A
Probab=42.02 E-value=16 Score=15.73 Aligned_cols=29 Identities=28% Similarity=0.686 Sum_probs=22.9
Q ss_pred EEECCCCCCHHHHHHHHHHHHCCC--CEEEEEE
Q ss_conf 000788874899999999852473--1598760
Q gi|254780401|r 52 FVMGGTGKTPTALAIAKAVIDKNL--KPGFLSR 82 (338)
Q Consensus 52 itvGGtGKTP~v~~l~~~l~~~g~--~~~ilsR 82 (338)
+.+||||-. =..|++.|.++|+ ++..++|
T Consensus 22 LVtGatG~i--G~~lv~~Ll~~g~~~~v~~~~R 52 (242)
T 2bka_A 22 FILGASGET--GRVLLKEILEQGLFSKVTLIGR 52 (242)
T ss_dssp EEECTTSHH--HHHHHHHHHHHTCCSEEEEEES
T ss_pred EEECCCCHH--HHHHHHHHHHCCCCCEEEEEEC
T ss_conf 999998499--9999999997799766999536
No 311
>1ly1_A Polynucleotide kinase; PNK, phosphatase, transferase; 2.00A {Enterobacteria phage T4} SCOP: c.37.1.1
Probab=41.47 E-value=8.6 Score=17.63 Aligned_cols=30 Identities=23% Similarity=0.279 Sum_probs=17.5
Q ss_pred EEEECCEEECCCCCCHHHHHHHHHHHHCCCCEEEEEE
Q ss_conf 8998230007888748999999998524731598760
Q gi|254780401|r 46 VICVGGFVMGGTGKTPTALAIAKAVIDKNLKPGFLSR 82 (338)
Q Consensus 46 VI~VGNitvGGtGKTP~v~~l~~~l~~~g~~~~ilsR 82 (338)
|+.+|. -|+|||-++..|++. .....+++.
T Consensus 5 I~i~G~---pGsGKSTla~~L~~~----~~~~~~i~~ 34 (181)
T 1ly1_A 5 ILTIGC---PGSGKSTWAREFIAK----NPGFYNINR 34 (181)
T ss_dssp EEEECC---TTSSHHHHHHHHHHH----STTEEEECH
T ss_pred EEEECC---CCCCHHHHHHHHHHH----CCCCEEECH
T ss_conf 999899---999989999999985----899899811
No 312
>3ius_A Uncharacterized conserved protein; APC63810, silicibacter pomeroyi DSS, structural genomics, PSI-2, protein structure initiative; HET: MSE; 1.66A {Ruegeria pomeroyi dss-3}
Probab=41.41 E-value=16 Score=15.67 Aligned_cols=29 Identities=24% Similarity=0.115 Sum_probs=23.0
Q ss_pred ECCCCCCHHHHHHHHHHHHCCCCEEEEEECC
Q ss_conf 0788874899999999852473159876045
Q gi|254780401|r 54 MGGTGKTPTALAIAKAVIDKNLKPGFLSRGY 84 (338)
Q Consensus 54 vGGtGKTP~v~~l~~~l~~~g~~~~ilsRGY 84 (338)
+.|+| =+=.+|++.|.++|++|..++|.-
T Consensus 10 ItGaG--fIGs~lv~~Ll~~G~~V~~l~R~~ 38 (286)
T 3ius_A 10 SFGHG--YTARVLSRALAPQGWRIIGTSRNP 38 (286)
T ss_dssp EETCC--HHHHHHHHHHGGGTCEEEEEESCG
T ss_pred EECCC--HHHHHHHHHHHHCCCEEEEEECCH
T ss_conf 98961--999999999997899899994883
No 313
>3b9p_A CG5977-PA, isoform A; AAA ATPase, ATP-binding, nucleotide-binding, hydrolase; 2.70A {Drosophila melanogaster}
Probab=41.32 E-value=7.9 Score=17.89 Aligned_cols=32 Identities=28% Similarity=0.230 Sum_probs=22.2
Q ss_pred CEEEECCEEECCCCCCHHHHHHHHHHHHCCCCEEEEEE
Q ss_conf 88998230007888748999999998524731598760
Q gi|254780401|r 45 PVICVGGFVMGGTGKTPTALAIAKAVIDKNLKPGFLSR 82 (338)
Q Consensus 45 pVI~VGNitvGGtGKTP~v~~l~~~l~~~g~~~~ilsR 82 (338)
-|+..|. =|||||-++.++|+.+ |.....++.
T Consensus 56 giLL~GP---pGtGKT~la~aiA~~~---~~~~~~~~~ 87 (297)
T 3b9p_A 56 GLLLFGP---PGNGKTLLARAVATEC---SATFLNISA 87 (297)
T ss_dssp EEEEESS---SSSCHHHHHHHHHHHT---TCEEEEEES
T ss_pred EEEEECC---CCCCHHHHHHHHHHHC---CCCCCCCCC
T ss_conf 4888896---9974999999998522---998322552
No 314
>3eph_A TRNA isopentenyltransferase; transferase, alternative initiation, ATP-binding, cytoplasm, mitochondrion, nucleotide-binding, nucleus; 2.95A {Saccharomyces cerevisiae} PDB: 3epj_A 3epk_A* 3epl_A*
Probab=41.07 E-value=15 Score=15.80 Aligned_cols=31 Identities=23% Similarity=0.433 Sum_probs=21.1
Q ss_pred CEEEECCEEECCCCCCHHHHHHHHHHHHCCCCEEEEEE
Q ss_conf 88998230007888748999999998524731598760
Q gi|254780401|r 45 PVICVGGFVMGGTGKTPTALAIAKAVIDKNLKPGFLSR 82 (338)
Q Consensus 45 pVI~VGNitvGGtGKTP~v~~l~~~l~~~g~~~~ilsR 82 (338)
+||+|-- .-|||||-+++-||+.|. .-|||=
T Consensus 3 kli~i~G--~TgsGKS~Lai~LA~~~~-----geIIsa 33 (409)
T 3eph_A 3 KVIVIAG--TTGVGKSQLSIQLAQKFN-----GEVINS 33 (409)
T ss_dssp EEEEEEE--CSSSSHHHHHHHHHHHHT-----EEEEEC
T ss_pred CEEEEEC--CCHHHHHHHHHHHHHHCC-----CEEECC
T ss_conf 6799989--760449999999999879-----989810
No 315
>2gek_A Phosphatidylinositol mannosyltransferase (PIMA); GT4 glycosyltransferase, rossmann fold, binary complex; HET: GDP; 2.40A {Mycobacterium smegmatis str} PDB: 2gej_A*
Probab=41.03 E-value=10 Score=17.03 Aligned_cols=32 Identities=19% Similarity=0.236 Sum_probs=25.6
Q ss_pred ECCCCCCHHHHHHHHHHHHCCCCEEEEEECCCCC
Q ss_conf 0788874899999999852473159876045787
Q gi|254780401|r 54 MGGTGKTPTALAIAKAVIDKNLKPGFLSRGYGRK 87 (338)
Q Consensus 54 vGGtGKTP~v~~l~~~l~~~g~~~~ilsRGYg~~ 87 (338)
.||.+ -.+..|++.|.++|+.|.|++.++...
T Consensus 34 ~GG~~--~~i~~La~~L~~~GheV~v~~~~~~~~ 65 (406)
T 2gek_A 34 PGGVQ--SHVLQLAEVLRDAGHEVSVLAPASPHV 65 (406)
T ss_dssp CCHHH--HHHHHHHHHHHHTTCEEEEEESCCTTS
T ss_pred CCHHH--HHHHHHHHHHHHCCCEEEEEECCCCCC
T ss_conf 98799--999999999997799899994289987
No 316
>1lv7_A FTSH; alpha/beta domain, four helix bundle, hydrolase; 1.50A {Escherichia coli} SCOP: c.37.1.20
Probab=40.99 E-value=9.2 Score=17.42 Aligned_cols=34 Identities=38% Similarity=0.347 Sum_probs=23.9
Q ss_pred CCCCCEEEECCEEECCCCCCHHHHHHHHHHHHCCCCEEEE
Q ss_conf 3889889982300078887489999999985247315987
Q gi|254780401|r 41 HAPIPVICVGGFVMGGTGKTPTALAIAKAVIDKNLKPGFL 80 (338)
Q Consensus 41 ~~~~pVI~VGNitvGGtGKTP~v~~l~~~l~~~g~~~~il 80 (338)
+.|--++-+|. =|||||-++.++|+.+ |.....+
T Consensus 43 ~~~~giLL~Gp---pGtGKT~la~aia~e~---~~~~~~v 76 (257)
T 1lv7_A 43 KIPKGVLMVGP---PGTGKTLLAKAIAGEA---KVPFFTI 76 (257)
T ss_dssp CCCCEEEEECC---TTSCHHHHHHHHHHHH---TCCEEEE
T ss_pred CCCCEEEEECC---CCCCHHHHHHHHHHHC---CCCEEEE
T ss_conf 99974675689---9988779999999871---9976999
No 317
>1e6c_A Shikimate kinase; phosphoryl transfer, ADP, shikimate pathway, P-loop protein, transferase; 1.8A {Erwinia chrysanthemi} SCOP: c.37.1.2 PDB: 1shk_A 2shk_A*
Probab=40.99 E-value=16 Score=15.62 Aligned_cols=24 Identities=33% Similarity=0.566 Sum_probs=19.0
Q ss_pred CCEEEECCEEECCCCCCHHHHHHHHHH
Q ss_conf 988998230007888748999999998
Q gi|254780401|r 44 IPVICVGGFVMGGTGKTPTALAIAKAV 70 (338)
Q Consensus 44 ~pVI~VGNitvGGtGKTP~v~~l~~~l 70 (338)
-|||-+| .-|+|||-+...||+.|
T Consensus 3 ~~Ivl~G---~~GsGKSTv~~~LA~~l 26 (173)
T 1e6c_A 3 EPIFMVG---ARGCGMTTVGRELARAL 26 (173)
T ss_dssp CCEEEES---CTTSSHHHHHHHHHHHH
T ss_pred CCEEEEC---CCCCCHHHHHHHHHHHH
T ss_conf 9899988---99998899999999996
No 318
>1rzu_A Glycogen synthase 1; glycosyl-transferase, GT-B fold, rossmann fold, ADP-binding; HET: ADP; 2.30A {Agrobacterium tumefaciens} SCOP: c.87.1.8 PDB: 1rzv_A
Probab=40.96 E-value=8.6 Score=17.64 Aligned_cols=30 Identities=23% Similarity=0.325 Sum_probs=24.8
Q ss_pred ECCCCCCHHHHHHHHHHHHCCCCEEEEEECCC
Q ss_conf 07888748999999998524731598760457
Q gi|254780401|r 54 MGGTGKTPTALAIAKAVIDKNLKPGFLSRGYG 85 (338)
Q Consensus 54 vGGtGKTP~v~~l~~~l~~~g~~~~ilsRGYg 85 (338)
+||-|+ +|-.|++.|.++|..|.|++=.|+
T Consensus 16 ~GGl~~--v~~~La~aL~~~Gh~V~VitP~y~ 45 (485)
T 1rzu_A 16 TGGLAD--VVGALPIALEAHGVRTRTLIPGYP 45 (485)
T ss_dssp SSHHHH--HHHHHHHHHHTTTCEEEEEEECCH
T ss_pred CCCHHH--HHHHHHHHHHHCCCEEEEEECCCC
T ss_conf 578999--999999999976997999967987
No 319
>1n7h_A GDP-D-mannose-4,6-dehydratase; rossmann fold, SDR, short-chain dehydrogenase/reductase, lyase; HET: NDP GDP; 1.80A {Arabidopsis thaliana} SCOP: c.2.1.2 PDB: 1n7g_A*
Probab=40.79 E-value=17 Score=15.60 Aligned_cols=29 Identities=21% Similarity=0.274 Sum_probs=23.1
Q ss_pred EEECCCCCCHHHHHHHHHHHHCCCCEEEEEE
Q ss_conf 0007888748999999998524731598760
Q gi|254780401|r 52 FVMGGTGKTPTALAIAKAVIDKNLKPGFLSR 82 (338)
Q Consensus 52 itvGGtGKTP~v~~l~~~l~~~g~~~~ilsR 82 (338)
|++||||- +-.+|++.|.++||.|..+.|
T Consensus 32 LVTGatGf--IGs~L~~~Ll~~gy~V~g~dr 60 (381)
T 1n7h_A 32 LITGITGQ--DGSYLTEFLLGKGYEVHGLIR 60 (381)
T ss_dssp EEETTTSH--HHHHHHHHHHHTTCEEEEEEC
T ss_pred EEECCCCH--HHHHHHHHHHHCCCEEEEEEC
T ss_conf 99256628--999999999978598999978
No 320
>3hdt_A Putative kinase; structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG; 2.79A {Clostridium symbiosum atcc 14940}
Probab=40.73 E-value=9.3 Score=17.37 Aligned_cols=15 Identities=20% Similarity=0.379 Sum_probs=13.7
Q ss_pred CCCCCHHHHHHHHHH
Q ss_conf 888748999999998
Q gi|254780401|r 56 GTGKTPTALAIAKAV 70 (338)
Q Consensus 56 GtGKTP~v~~l~~~l 70 (338)
|||||.+...||+.|
T Consensus 24 GsGKsTia~~LA~~L 38 (223)
T 3hdt_A 24 GSGGRIVGKKLAEEL 38 (223)
T ss_dssp TSCHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHH
T ss_conf 899799999999994
No 321
>2ga8_A Hypothetical 39.9 kDa protein; YFR007W, YFH7, unknown function; HET: CME; 1.77A {Saccharomyces cerevisiae} PDB: 2gaa_A*
Probab=40.69 E-value=16 Score=15.78 Aligned_cols=26 Identities=31% Similarity=0.488 Sum_probs=21.3
Q ss_pred CCEEEECCEEECCCCCCHHHHHHHHHHHH
Q ss_conf 98899823000788874899999999852
Q gi|254780401|r 44 IPVICVGGFVMGGTGKTPTALAIAKAVID 72 (338)
Q Consensus 44 ~pVI~VGNitvGGtGKTP~v~~l~~~l~~ 72 (338)
+-||-||.- |+|||-++.-||+.+.+
T Consensus 25 ~~ViLvG~p---GvGKTaI~egLA~~I~~ 50 (359)
T 2ga8_A 25 VCVILVGSP---GSGKSTIAEELCQIINE 50 (359)
T ss_dssp EEEEEECCT---TSSHHHHHHHHHHHHHH
T ss_pred CCEEEECCC---CCCHHHHHHHHHHHHHH
T ss_conf 676998499---98899999999999983
No 322
>1jjv_A Dephospho-COA kinase; P-loop nucleotide-binding fold, structure 2 function project, S2F, structural genomics, transferase; HET: ATP; 2.00A {Haemophilus influenzae} SCOP: c.37.1.1
Probab=40.40 E-value=9.3 Score=17.37 Aligned_cols=18 Identities=39% Similarity=0.517 Sum_probs=12.5
Q ss_pred CCCCCHHHHHHHHHHHHCCCCE
Q ss_conf 8887489999999985247315
Q gi|254780401|r 56 GTGKTPTALAIAKAVIDKNLKP 77 (338)
Q Consensus 56 GtGKTP~v~~l~~~l~~~g~~~ 77 (338)
|+|||- ++++|++.|+.+
T Consensus 12 gSGKSt----v~~~l~~~G~~v 29 (206)
T 1jjv_A 12 GSGKTT----IANLFTDLGVPL 29 (206)
T ss_dssp TSCHHH----HHHHHHTTTCCE
T ss_pred CCCHHH----HHHHHHHCCCEE
T ss_conf 766999----999999889969
No 323
>2btm_A TIM, protein (triosephosphate isomerase); thermophilic triose-phosphate, glycolysis; 2.40A {Geobacillus stearothermophilus} SCOP: c.1.1.1 PDB: 1btm_A
Probab=40.23 E-value=13 Score=16.29 Aligned_cols=10 Identities=20% Similarity=0.481 Sum_probs=3.8
Q ss_pred CHHHHHHHHH
Q ss_conf 3578999887
Q gi|254780401|r 233 DTEKFFTTVR 242 (338)
Q Consensus 233 ~P~~F~~~L~ 242 (338)
+|+.|.+.++
T Consensus 238 ~~~~F~~Ii~ 247 (252)
T 2btm_A 238 EPASFLQLVE 247 (252)
T ss_dssp SHHHHHHHHH
T ss_pred CHHHHHHHHH
T ss_conf 8899999999
No 324
>1gvn_B Zeta; postsegregational killing system, plasmid; 1.95A {Streptococcus pyogenes} SCOP: c.37.1.21
Probab=40.21 E-value=12 Score=16.51 Aligned_cols=17 Identities=35% Similarity=0.366 Sum_probs=14.1
Q ss_pred CCCCCCHHHHHHHHHHH
Q ss_conf 78887489999999985
Q gi|254780401|r 55 GGTGKTPTALAIAKAVI 71 (338)
Q Consensus 55 GGtGKTP~v~~l~~~l~ 71 (338)
=|||||-++..|++.+.
T Consensus 42 pGsGKT~la~~la~~~~ 58 (287)
T 1gvn_B 42 PGSGKTSLRSAIFEETQ 58 (287)
T ss_dssp TTSCTHHHHHHHHHHTT
T ss_pred CCCCHHHHHHHHHHHCC
T ss_conf 97658999999999809
No 325
>1mvo_A PHOP response regulator; phosphate regulon, transcriptional regulatory protein, alpha/beta doubly wound fold, phosphorylation; 1.60A {Bacillus subtilis} SCOP: c.23.1.1
Probab=40.19 E-value=17 Score=15.54 Aligned_cols=25 Identities=28% Similarity=0.404 Sum_probs=11.1
Q ss_pred CCCCCCHHHHHHHHCCCCCCEEEEC
Q ss_conf 3465201225664102457479971
Q gi|254780401|r 117 TIVTSDRKIGVQMLLQEGVDIIIMD 141 (338)
Q Consensus 117 v~V~~~R~~~~~~~~~~~~diiIlD 141 (338)
|..+.+-.+|...+.+..+|+||+|
T Consensus 30 v~~a~~g~~al~~l~~~~~dlvl~D 54 (136)
T 1mvo_A 30 VITASDGEEALKKAETEKPDLIVLD 54 (136)
T ss_dssp EEEESSHHHHHHHHHHHCCSEEEEE
T ss_pred EEEECCHHHHHHHHHHCCCCEEEEC
T ss_conf 9998999999999884599899826
No 326
>1gpj_A Glutamyl-tRNA reductase; tRNA-dependent tetrapyrrole biosynthesis; HET: GMC CIT; 1.95A {Methanopyrus kandleri} SCOP: a.151.1.1 c.2.1.7 d.58.39.1
Probab=40.14 E-value=16 Score=15.75 Aligned_cols=32 Identities=22% Similarity=0.468 Sum_probs=15.7
Q ss_pred EEECCCCCCHHHHHHHHHHHHCCCC-EEEEEECCC
Q ss_conf 0007888748999999998524731-598760457
Q gi|254780401|r 52 FVMGGTGKTPTALAIAKAVIDKNLK-PGFLSRGYG 85 (338)
Q Consensus 52 itvGGtGKTP~v~~l~~~l~~~g~~-~~ilsRGYg 85 (338)
+.+-|+|++ ....+++|.++|.+ +.|.+|-+.
T Consensus 170 vLviGaGem--~~~~~~~L~~~g~~~i~v~nRt~~ 202 (404)
T 1gpj_A 170 VLVVGAGEM--GKTVAKSLVDRGVRAVLVANRTYE 202 (404)
T ss_dssp EEEESCCHH--HHHHHHHHHHHCCSEEEEECSSHH
T ss_pred EEEECCCHH--HHHHHHHHHHCCCCCEEEECCCHH
T ss_conf 899838488--999999999568886078668766
No 327
>2gkg_A Response regulator homolog; social motility, receiver domain, signalling, high resolutio signaling protein; 1.00A {Myxococcus xanthus} PDB: 2i6f_A 2nt4_A 2nt3_A
Probab=39.78 E-value=17 Score=15.59 Aligned_cols=30 Identities=17% Similarity=0.227 Sum_probs=19.5
Q ss_pred CCCCCCCCHHHHHHHHCCCCCCEEEECCCC
Q ss_conf 763465201225664102457479971832
Q gi|254780401|r 115 AVTIVTSDRKIGVQMLLQEGVDIIIMDDGF 144 (338)
Q Consensus 115 ~pv~V~~~R~~~~~~~~~~~~diiIlDDGf 144 (338)
..|..+.+-.+|...+.+..+|+||+|..+
T Consensus 30 ~~v~~a~~~~~al~~l~~~~pdliilD~~l 59 (127)
T 2gkg_A 30 FTVDETTDGKGSVEQIRRDRPDLVVLAVDL 59 (127)
T ss_dssp CEEEEECCHHHHHHHHHHHCCSEEEEESBC
T ss_pred CEEEEECCHHHHHHHHHHCCCCEEEEECCC
T ss_conf 999998999999999984799999997577
No 328
>1sxj_A Activator 1 95 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ ATPase, DNA polymerase; HET: ATG ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=39.70 E-value=8.7 Score=17.60 Aligned_cols=30 Identities=23% Similarity=0.215 Sum_probs=21.8
Q ss_pred CEEEECCEEECCCCCCHHHHHHHHHHHHCCCCEEEE
Q ss_conf 889982300078887489999999985247315987
Q gi|254780401|r 45 PVICVGGFVMGGTGKTPTALAIAKAVIDKNLKPGFL 80 (338)
Q Consensus 45 pVI~VGNitvGGtGKTP~v~~l~~~l~~~g~~~~il 80 (338)
.++-.|- =|+|||-++..+|+.+ |+.+.-+
T Consensus 79 ~lLL~GP---pG~GKTTla~~lAkel---g~~viei 108 (516)
T 1sxj_A 79 AAMLYGP---PGIGKTTAAHLVAQEL---GYDILEQ 108 (516)
T ss_dssp EEEEECS---TTSSHHHHHHHHHHHT---TCEEEEE
T ss_pred EEEEECC---CCHHHHHHHHHHHHHH---CCCEEEE
T ss_conf 7999899---9703999999999981---9998997
No 329
>1y63_A LMAJ004144AAA protein; structural genomics, protein structure initiative, PSI, SGPP; HET: ADP; 1.70A {Leishmania major strain friedlin} SCOP: c.37.1.1
Probab=39.38 E-value=8.3 Score=17.74 Aligned_cols=25 Identities=40% Similarity=0.450 Sum_probs=18.0
Q ss_pred CCEEEECCEEECCCCCCHHHHHHHHHHH
Q ss_conf 9889982300078887489999999985
Q gi|254780401|r 44 IPVICVGGFVMGGTGKTPTALAIAKAVI 71 (338)
Q Consensus 44 ~pVI~VGNitvGGtGKTP~v~~l~~~l~ 71 (338)
.-|+..|.- |||||-++..|++.|.
T Consensus 11 ~~Ivi~G~~---GsGKTTiak~La~~l~ 35 (184)
T 1y63_A 11 INILITGTP---GTGKTSMAEMIAAELD 35 (184)
T ss_dssp CEEEEECST---TSSHHHHHHHHHHHST
T ss_pred CEEEEECCC---CCCHHHHHHHHHHHHC
T ss_conf 769998799---9988999999999868
No 330
>3guy_A Short-chain dehydrogenase/reductase SDR; structural genomics, oxidoreductase, PSI-2, protein structure initiative; 1.90A {Vibrio parahaemolyticus AQ3810}
Probab=39.36 E-value=17 Score=15.45 Aligned_cols=29 Identities=14% Similarity=0.129 Sum_probs=23.9
Q ss_pred EEECCCCCCHHHHHHHHHHHHCCCCEEEEEE
Q ss_conf 0007888748999999998524731598760
Q gi|254780401|r 52 FVMGGTGKTPTALAIAKAVIDKNLKPGFLSR 82 (338)
Q Consensus 52 itvGGtGKTP~v~~l~~~l~~~g~~~~ilsR 82 (338)
|.+|||+ =+=..+|+.|.++|+++.+++|
T Consensus 5 lITGass--GIG~a~A~~la~~G~~V~l~~R 33 (230)
T 3guy_A 5 VITGASS--GLGAELAKLYDAEGKATYLTGR 33 (230)
T ss_dssp EEESTTS--HHHHHHHHHHHHTTCCEEEEES
T ss_pred EEECCCC--HHHHHHHHHHHHCCCEEEEEEC
T ss_conf 9918771--9999999999987998999989
No 331
>2d00_A V-type ATP synthase subunit F; V-ATPase, CHEY, FRET, hydrolase; 2.20A {Thermus thermophilus} SCOP: c.149.1.1 PDB: 3a5c_H* 3a5d_H
Probab=39.31 E-value=17 Score=15.45 Aligned_cols=56 Identities=20% Similarity=0.219 Sum_probs=34.4
Q ss_pred ECCCCHHHHHHHHHHHCCCCCCCCCCCCCCCCCHHHHHHHHHHH-HHCC-CEEEECHHHHHHCCCCC
Q ss_conf 41553578999887401000012214332348989999999975-6479-87998546634382333
Q gi|254780401|r 229 SGIADTEKFFTTVRQLGALIEQCYSFGDHAHLSDKKIAYLLDQA-QQKG-LILVTTAKDAMRLHKRP 293 (338)
Q Consensus 229 sGIa~P~~F~~~L~~~g~~i~~~~~fpDHh~ys~~dl~~i~~~a-~~~~-~~iiTTEKD~VKL~~~~ 293 (338)
+-||+++ +....+-.|+ -.|+.| +.+++.+.+++. +..+ +.|+.||..+-++++..
T Consensus 7 ~VIGd~d-~v~GF~L~Gi-----~~~~~~---~~ee~~~~~~~l~~~~d~giI~Ite~~~~~i~~~i 64 (109)
T 2d00_A 7 AVIADPE-TAQGFRLAGL-----EGYGAS---SAEEAQSLLETLVERGGYALVAVDEALLPDPERAV 64 (109)
T ss_dssp EEEECHH-HHHHHHHTTS-----EEEECS---SHHHHHHHHHHHHHHCCCSEEEEETTTCSCHHHHH
T ss_pred EEECCHH-HHHHHHHHCE-----EEEECC---CHHHHHHHHHHHHHCCCEEEEEECHHHHHHHHHHH
T ss_conf 9983789-8778774050-----558669---98999999999984898599998189987659999
No 332
>2zan_A Vacuolar protein sorting-associating protein 4B; SKD1, VPS4B, AAA ATPase, ATP-binding, coiled coil, membrane, nucleotide-binding, phosphorylation; HET: ATP; 3.00A {Mus musculus} PDB: 2zam_A* 2zao_A* 2jqh_A 2jqk_A 1wr0_A 2jq9_A 2k3w_A 1yxr_A
Probab=39.26 E-value=8.1 Score=17.81 Aligned_cols=23 Identities=35% Similarity=0.429 Sum_probs=16.9
Q ss_pred EEEECCEEECCCCCCHHHHHHHHHHH
Q ss_conf 89982300078887489999999985
Q gi|254780401|r 46 VICVGGFVMGGTGKTPTALAIAKAVI 71 (338)
Q Consensus 46 VI~VGNitvGGtGKTP~v~~l~~~l~ 71 (338)
|+-.|- =|||||-++-++|..+.
T Consensus 170 iLL~GP---PGtGKT~lakaiA~e~~ 192 (444)
T 2zan_A 170 ILLFGP---PGTGKSYLAKAVATEAN 192 (444)
T ss_dssp EEEECS---TTSSHHHHHHHHHHHCC
T ss_pred EEEECC---CCCCHHHHHHHHHHHHC
T ss_conf 477798---99978999999998721
No 333
>2ewv_A Twitching motility protein PILT; pilus retraction motor, ATPase, hexameric PILT, protein transport; HET: ADP; 2.80A {Aquifex aeolicus VF5} PDB: 2eww_A* 2gsz_A*
Probab=39.21 E-value=17 Score=15.44 Aligned_cols=20 Identities=25% Similarity=0.313 Sum_probs=8.9
Q ss_pred EEEEEECCCCHHHHHHHHHH
Q ss_conf 38987415535789998874
Q gi|254780401|r 224 KVLAFSGIADTEKFFTTVRQ 243 (338)
Q Consensus 224 ~v~afsGIa~P~~F~~~L~~ 243 (338)
.++.+.-|=|++.....++.
T Consensus 211 Dvi~vGEiRD~eta~~a~~a 230 (372)
T 2ewv_A 211 DVIFVGEMRDLETVETALRA 230 (372)
T ss_dssp SEEEESCCCSHHHHHHHHHH
T ss_pred CEEEECCCCCHHHHHHHHHH
T ss_conf 97860576998999999999
No 334
>1knq_A Gluconate kinase; ALFA/beta structure, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.17 PDB: 1ko1_A 1ko4_A 1ko5_A* 1ko8_A* 1kof_A*
Probab=39.04 E-value=10 Score=17.07 Aligned_cols=18 Identities=28% Similarity=0.510 Sum_probs=15.1
Q ss_pred ECCCCCCHHHHHHHHHHH
Q ss_conf 078887489999999985
Q gi|254780401|r 54 MGGTGKTPTALAIAKAVI 71 (338)
Q Consensus 54 vGGtGKTP~v~~l~~~l~ 71 (338)
.-|+|||-++..|++.|.
T Consensus 16 ~~GsGKST~a~~La~~l~ 33 (175)
T 1knq_A 16 VSGSGKSAVASEVAHQLH 33 (175)
T ss_dssp STTSCHHHHHHHHHHHHT
T ss_pred CCCCCHHHHHHHHHHHHC
T ss_conf 999998999999999969
No 335
>1o51_A Hypothetical protein TM0021; structural genomics, JCSG, PSI, protein structure initiative, joint center for structural genomics; HET: ADP; 2.50A {Thermotoga maritima} SCOP: d.58.5.4
Probab=38.73 E-value=18 Score=15.39 Aligned_cols=27 Identities=19% Similarity=0.124 Sum_probs=23.6
Q ss_pred CHHHHHHHHHHHHCCCCEEEEEECCCC
Q ss_conf 489999999985247315987604578
Q gi|254780401|r 60 TPTALAIAKAVIDKNLKPGFLSRGYGR 86 (338)
Q Consensus 60 TP~v~~l~~~l~~~g~~~~ilsRGYg~ 86 (338)
-|+..|+++.+++.|..=+.+.||--|
T Consensus 29 ~pL~~~Iv~~ar~~GiaGATV~rGi~G 55 (114)
T 1o51_A 29 KPLFEYLVKRAYELGMKGVTVYRGIMG 55 (114)
T ss_dssp EEHHHHHHHHHHHTTCSCCEEEECSCC
T ss_pred CCHHHHHHHHHHHCCCCCEEEEEEEEE
T ss_conf 199999999999879995799973354
No 336
>3l0o_A Transcription termination factor RHO; helicase, RHO factor, RNA capture mechanism, ATP-binding, hydrolase, nucleotide-binding, RN binding; 2.35A {Thermotoga maritima}
Probab=38.49 E-value=18 Score=15.36 Aligned_cols=25 Identities=20% Similarity=0.169 Sum_probs=18.5
Q ss_pred ECCCCCCHHHHHHHHHHHHCCCCEE
Q ss_conf 0788874899999999852473159
Q gi|254780401|r 54 MGGTGKTPTALAIAKAVIDKNLKPG 78 (338)
Q Consensus 54 vGGtGKTP~v~~l~~~l~~~g~~~~ 78 (338)
-=|||||-+...+++.....+-.+.
T Consensus 183 ~~g~GKT~ll~~ia~~~~~n~~~v~ 207 (427)
T 3l0o_A 183 PPKAGKTTILKEIANGIAENHPDTI 207 (427)
T ss_dssp CTTCCHHHHHHHHHHHHHHHCTTSE
T ss_pred CCCCCHHHHHHHHHHHHHHCCCCEE
T ss_conf 8887767999999999973799709
No 337
>1zh2_A KDP operon transcriptional regulatory protein KDPE; two-component system, gene regulation, transcription factor, KDP potassium transport system; 2.00A {Escherichia coli} SCOP: c.23.1.1 PDB: 1zh4_A
Probab=38.46 E-value=18 Score=15.36 Aligned_cols=20 Identities=10% Similarity=0.212 Sum_probs=12.5
Q ss_pred EEEEEECCCCHHHHHHHHHH
Q ss_conf 38987415535789998874
Q gi|254780401|r 224 KVLAFSGIADTEKFFTTVRQ 243 (338)
Q Consensus 224 ~v~afsGIa~P~~F~~~L~~ 243 (338)
+++++||-++++.-.+.++.
T Consensus 74 piI~lt~~~~~~~~~~a~~~ 93 (121)
T 1zh2_A 74 PVIVLSARSEESDKIAALDA 93 (121)
T ss_dssp CEEEEESCCSHHHHHHHHHH
T ss_pred EEEEEECCCCHHHHHHHHHC
T ss_conf 09999785999999999986
No 338
>3g2e_A OORC subunit of 2-oxoglutarate:acceptor oxidoreductase; structural genomics, PSI-2, protein structure initiative; 2.00A {Campylobacter jejuni}
Probab=38.45 E-value=18 Score=15.36 Aligned_cols=85 Identities=15% Similarity=0.112 Sum_probs=50.8
Q ss_pred ECCCCCCHHHHHHHHHHHHCCCCEEEEEECCCCCCCCCEEEECCCCCHHHHCCHHHHHH----HCCCCCCCCCHHHHHHH
Q ss_conf 07888748999999998524731598760457877775587145678877042123322----05763465201225664
Q gi|254780401|r 54 MGGTGKTPTALAIAKAVIDKNLKPGFLSRGYGRKSRISFRVDLEKHSAYDVGDEPLLLA----RRAVTIVTSDRKIGVQM 129 (338)
Q Consensus 54 vGGtGKTP~v~~l~~~l~~~g~~~~ilsRGYg~~~~~~~~v~~~~~~~~~vGDEp~lla----~~~pv~V~~~R~~~~~~ 129 (338)
+||+|=--+...|++.+...|+.+... +=||...+|..... -.-++|||..-. ....++|+-+.....+.
T Consensus 12 ~gGqGv~t~~~iL~~aa~~~G~~v~~~-~~~gs~~RGG~~~~-----~vri~~~~i~~~~~~~~~~dilv~~~~~~~~~~ 85 (194)
T 3g2e_A 12 EGGQGVITAGEILAEAAIKEGRQAFKA-STYTSQVRGGPTKV-----DIIIDDKEILFPYAVEGEVDFMLSTADKGYKGF 85 (194)
T ss_dssp C--CTHHHHHHHHHHHHHHTTCEEEEE-EEEESSSSCCSEEE-----EEEEESSCCSSCSCCTTCEEEEEECCHHHHHHH
T ss_pred ECCHHHHHHHHHHHHHHHHCCCCEEEE-ECCCCCCCCCEEEE-----EEEEECCCCCCCCCCCCCCCEEEECCHHHHHHH
T ss_conf 184159999999999999759978986-46783012884899-----999927744210013688647860789999988
Q ss_pred HCCCCC-CEEEECCCC
Q ss_conf 102457-479971832
Q gi|254780401|r 130 LLQEGV-DIIIMDDGF 144 (338)
Q Consensus 130 ~~~~~~-diiIlDDGf 144 (338)
+..... .++|.|..+
T Consensus 86 ~~~l~~~g~vi~n~~~ 101 (194)
T 3g2e_A 86 RGGVKEGGIIVVEPNL 101 (194)
T ss_dssp GGGEEEEEEEEECTTT
T ss_pred HHHCCCCCEEEEECCC
T ss_conf 7404688189993998
No 339
>1of1_A Thymidine kinase; transferase, antiviral drug, enzyme- prodrug gene, DNA synthesis, ATP-binding; HET: SCT; 1.95A {Herpes simplex virus} SCOP: c.37.1.1
Probab=38.44 E-value=11 Score=16.87 Aligned_cols=25 Identities=24% Similarity=0.235 Sum_probs=19.0
Q ss_pred EEECCEEECCCCCCHHHHHHHHHHHHCC
Q ss_conf 9982300078887489999999985247
Q gi|254780401|r 47 ICVGGFVMGGTGKTPTALAIAKAVIDKN 74 (338)
Q Consensus 47 I~VGNitvGGtGKTP~v~~l~~~l~~~g 74 (338)
..=||+ |+|||-++..|++.+...+
T Consensus 53 ~IEG~i---GsGKTTl~k~La~~l~~~~ 77 (376)
T 1of1_A 53 YIDGPH---GMGKTTTTQLLVALGSRDD 77 (376)
T ss_dssp EECSST---TSSHHHHHHHHHC----CC
T ss_pred EEECCC---CCCHHHHHHHHHHHCCCCC
T ss_conf 998987---6789999999998606487
No 340
>3lw7_A Adenylate kinase related protein (ADKA-like); AMP, PSI, MCSG, structural genomics, midwest center for structural genomics; HET: AMP; 2.30A {Sulfolobus solfataricus} PDB: 3h0k_A
Probab=38.42 E-value=10 Score=17.05 Aligned_cols=20 Identities=30% Similarity=0.421 Sum_probs=12.6
Q ss_pred ECCCCCCHHHHHHHHHHHHCCCCE
Q ss_conf 078887489999999985247315
Q gi|254780401|r 54 MGGTGKTPTALAIAKAVIDKNLKP 77 (338)
Q Consensus 54 vGGtGKTP~v~~l~~~l~~~g~~~ 77 (338)
.=|+|||-++.+| .+.|+.+
T Consensus 9 ~~GSGKsTva~~L----~~~g~~~ 28 (179)
T 3lw7_A 9 MPGSGKSEFAKLL----KERGAKV 28 (179)
T ss_dssp CTTSCHHHHHHHH----HHTTCEE
T ss_pred CCCCCHHHHHHHH----HHCCCEE
T ss_conf 9998899999999----9879929
No 341
>2bdt_A BH3686; alpha-beta protein, structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 2.40A {Bacillus halodurans c-125} SCOP: c.37.1.25
Probab=38.28 E-value=8.8 Score=17.55 Aligned_cols=16 Identities=31% Similarity=0.526 Sum_probs=13.4
Q ss_pred CCCCCCHHHHHHHHHH
Q ss_conf 7888748999999998
Q gi|254780401|r 55 GGTGKTPTALAIAKAV 70 (338)
Q Consensus 55 GGtGKTP~v~~l~~~l 70 (338)
=|+|||-++..|++.|
T Consensus 11 ~GsGKTTla~~La~~l 26 (189)
T 2bdt_A 11 AGVGKSTTCKRLAAQL 26 (189)
T ss_dssp TTSSHHHHHHHHHHHS
T ss_pred CCCCHHHHHHHHHHHC
T ss_conf 9989899999999980
No 342
>1iir_A Glycosyltransferase GTFB; rossmann fold; 1.80A {Amycolatopsis orientalis} SCOP: c.87.1.5
Probab=38.25 E-value=18 Score=15.34 Aligned_cols=32 Identities=22% Similarity=0.214 Sum_probs=24.1
Q ss_pred EECCC-CC-CHHHHHHHHHHHHCCCCEEEEEECCC
Q ss_conf 00788-87-48999999998524731598760457
Q gi|254780401|r 53 VMGGT-GK-TPTALAIAKAVIDKNLKPGFLSRGYG 85 (338)
Q Consensus 53 tvGGt-GK-TP~v~~l~~~l~~~g~~~~ilsRGYg 85 (338)
..+|| |- .|+ +.|++.|.++|+.|.+++-+..
T Consensus 6 ~~~gt~Ghv~P~-lala~~L~~~Gh~V~~~~~~~~ 39 (415)
T 1iir_A 6 ATCGSRGDTEPL-VALAVRVRDLGADVRMCAPPDC 39 (415)
T ss_dssp ECCSCHHHHHHH-HHHHHHHHHTTCEEEEEECGGG
T ss_pred ECCCCHHHHHHH-HHHHHHHHHCCCEEEEEECCCH
T ss_conf 889864689999-9999999987998999958307
No 343
>1uaa_A REP helicase, protein (ATP-dependent DNA helicase REP.); complex (helicase/DNA), DNA unwinding, hydrolase/DNA complex; HET: DNA; 3.00A {Escherichia coli} SCOP: c.37.1.19 c.37.1.19
Probab=38.23 E-value=16 Score=15.71 Aligned_cols=38 Identities=16% Similarity=0.206 Sum_probs=21.7
Q ss_pred CCEEEECCEEECCCCCCHHHHHHHHHHH-HCC---CCEEEEEECCCC
Q ss_conf 9889982300078887489999999985-247---315987604578
Q gi|254780401|r 44 IPVICVGGFVMGGTGKTPTALAIAKAVI-DKN---LKPGFLSRGYGR 86 (338)
Q Consensus 44 ~pVI~VGNitvGGtGKTP~v~~l~~~l~-~~g---~~~~ilsRGYg~ 86 (338)
-|++.++ .=|||||-+...-+.+|. +.| -++.+|| |.+
T Consensus 16 g~~lV~A---gAGSGKT~tL~~ri~~Ll~~~~~~p~~Il~lT--FT~ 57 (673)
T 1uaa_A 16 GPCLVLA---GAGSGKTRVITNKIAHLIRGCGYQARHIAAVT--FTN 57 (673)
T ss_dssp SEEEECC---CTTSCHHHHHHHHHHHHHHHHCCCGGGEEEEE--SSH
T ss_pred CCEEEEE---ECCHHHHHHHHHHHHHHHHCCCCCHHHEEEEC--CHH
T ss_conf 8989998---18548999999999999981898961598865--559
No 344
>2gk4_A Conserved hypothetical protein; alpha-beta-alpha sandwich, flavoprotein, structural genomics, PSI, protein structure initiative; 1.83A {Streptococcus pneumoniae TIGR4}
Probab=38.08 E-value=11 Score=16.94 Aligned_cols=33 Identities=12% Similarity=0.252 Sum_probs=28.5
Q ss_pred CEEEECCEEECCCCCCHHHHHHHHHHHHCCCCEEEEEE
Q ss_conf 88998230007888748999999998524731598760
Q gi|254780401|r 45 PVICVGGFVMGGTGKTPTALAIAKAVIDKNLKPGFLSR 82 (338)
Q Consensus 45 pVI~VGNitvGGtGKTP~v~~l~~~l~~~g~~~~ilsR 82 (338)
||=.|+|.+.|-+| .+||+.+..+|+.|..|++
T Consensus 19 ~VR~ItN~SSGk~G-----~~iA~~~~~~Ga~V~li~g 51 (232)
T 2gk4_A 19 SVRSITNHSTGHLG-----KIITETLLSAGYEVCLITT 51 (232)
T ss_dssp SSEEEEECCCCHHH-----HHHHHHHHHTTCEEEEEEC
T ss_pred CCCEECCCCCHHHH-----HHHHHHHHHCCCEEEEEEC
T ss_conf 94265705957999-----9999999978998999961
No 345
>2rc5_A Ferredoxin-NADP reductase; FAD, oxidoreductase; HET: FAD; 2.43A {Leptospira interrogans} PDB: 2rc6_A*
Probab=38.00 E-value=16 Score=15.70 Aligned_cols=22 Identities=5% Similarity=0.120 Sum_probs=10.6
Q ss_pred CCEEEEEECCCCHHHHHHHHHH
Q ss_conf 8638987415535789998874
Q gi|254780401|r 222 GKKVLAFSGIADTEKFFTTVRQ 243 (338)
Q Consensus 222 ~k~v~afsGIa~P~~F~~~L~~ 243 (338)
.++++.+||---=..|..+|+.
T Consensus 165 ~~~lv~IagGtGIaP~~s~l~~ 186 (314)
T 2rc5_A 165 SGDIMFLATGTGIAPFIGMSEE 186 (314)
T ss_dssp CSCEEEEEEGGGGHHHHHHHHH
T ss_pred CCCEEEEECCEEHHHHHHHHHH
T ss_conf 9858999787207789999999
No 346
>2vl7_A XPD; helicase, unknown function; 2.25A {Sulfolobus tokodaii}
Probab=37.98 E-value=18 Score=15.31 Aligned_cols=25 Identities=24% Similarity=0.187 Sum_probs=15.2
Q ss_pred CCCCCCHHHHHHHHHHHHCCCCEEEEEE
Q ss_conf 7888748999999998524731598760
Q gi|254780401|r 55 GGTGKTPTALAIAKAVIDKNLKPGFLSR 82 (338)
Q Consensus 55 GGtGKTP~v~~l~~~l~~~g~~~~ilsR 82 (338)
=|||||=..+..|.. .|.++.|.++
T Consensus 35 TGtGKTla~L~~a~~---~~~kvii~t~ 59 (540)
T 2vl7_A 35 PGLGKTVFVEVLGMQ---LKKKVLIFTR 59 (540)
T ss_dssp TTSCHHHHHHHHHHH---HTCEEEEEES
T ss_pred CCHHHHHHHHHHHHH---HCCCEEEECC
T ss_conf 816899999999999---7991999969
No 347
>2oca_A DAR protein, ATP-dependent DNA helicase UVSW; ATP-dependant helicase, T4-bacteriophage, recombination, hydrolase; 2.70A {Enterobacteria phage T4}
Probab=37.95 E-value=17 Score=15.43 Aligned_cols=56 Identities=9% Similarity=0.135 Sum_probs=35.9
Q ss_pred CCEEEE-EECCCCHHHHHHHHHHHCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCC-EEEEC
Q ss_conf 863898-74155357899988740100001221433234898999999997564798-79985
Q gi|254780401|r 222 GKKVLA-FSGIADTEKFFTTVRQLGALIEQCYSFGDHAHLSDKKIAYLLDQAQQKGL-ILVTT 282 (338)
Q Consensus 222 ~k~v~a-fsGIa~P~~F~~~L~~~g~~i~~~~~fpDHh~ys~~dl~~i~~~a~~~~~-~iiTT 282 (338)
++++++ +..+..-+.+.+.|...+..+. -=|..-+..+-+.+.+..++... .||+|
T Consensus 347 ~~~~LI~~~~~~~~~~l~~~L~~~~~~~~-----~i~g~~~~~~r~~~~~~~~~~~~~iivaT 404 (510)
T 2oca_A 347 DENAFVMFKHVSHGKAIFDLIKNEYDKVY-----YVSGEVDTETRNIMKTLAENGKGIIIVAS 404 (510)
T ss_dssp TCEEEEEESSHHHHHHHHHHHHTTCSSEE-----EESSSTTHHHHHHHHHHHHHCCSCEEEEE
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHCCCCEE-----EEECCCCHHHHHHHHHHHHCCCCCEEEEE
T ss_conf 23466788778869999999985388389-----99578757789999999756998599998
No 348
>1qhx_A CPT, protein (chloramphenicol phosphotransferase); kinase, antibiotic resistance, phosphorylation, mononucleotide binding fold; HET: ATP; 2.50A {Streptomyces venezuelae} SCOP: c.37.1.3 PDB: 1grr_A* 1grq_A 1qhs_A* 1qhn_A* 1qhy_A*
Probab=37.90 E-value=9.7 Score=17.25 Aligned_cols=19 Identities=11% Similarity=0.230 Sum_probs=15.4
Q ss_pred CCCCCCHHHHHHHHHHHHC
Q ss_conf 7888748999999998524
Q gi|254780401|r 55 GGTGKTPTALAIAKAVIDK 73 (338)
Q Consensus 55 GGtGKTP~v~~l~~~l~~~ 73 (338)
=|+|||-++..|++.|...
T Consensus 12 ~GsGKsTvA~~La~~l~~~ 30 (178)
T 1qhx_A 12 SSAGKSGIVRCLQSVLPEP 30 (178)
T ss_dssp TTSSHHHHHHHHHHHSSSC
T ss_pred CCCCHHHHHHHHHHHHCCC
T ss_conf 9999899999999984899
No 349
>3fmo_B ATP-dependent RNA helicase DDX19B; nuclear porin, nuclear pore complex, nucleocytoplasmic transport, mRNA export, protein interaction; HET: ADP; 2.51A {Homo sapiens}
Probab=37.87 E-value=18 Score=15.30 Aligned_cols=14 Identities=14% Similarity=0.188 Sum_probs=10.0
Q ss_pred CCCHHHHHHHHHHH
Q ss_conf 55357899988740
Q gi|254780401|r 231 IADTEKFFTTVRQL 244 (338)
Q Consensus 231 Ia~P~~F~~~L~~~ 244 (338)
||.|.++.+.+.+.
T Consensus 215 v~TPgrl~~~l~~~ 228 (300)
T 3fmo_B 215 IGTPGTVLDWCSKL 228 (300)
T ss_dssp EECHHHHHHHHTTT
T ss_pred EECCHHHHHHHHHC
T ss_conf 94717999999704
No 350
>2ze6_A Isopentenyl transferase; crown GALL tumor, cytokinin biosynthesis, plasmid; HET: DST AMP; 2.10A {Agrobacterium tumefaciens} PDB: 2ze5_A* 2ze7_A* 2ze8_A
Probab=37.83 E-value=11 Score=16.82 Aligned_cols=17 Identities=35% Similarity=0.350 Sum_probs=15.0
Q ss_pred CCCCCCHHHHHHHHHHH
Q ss_conf 78887489999999985
Q gi|254780401|r 55 GGTGKTPTALAIAKAVI 71 (338)
Q Consensus 55 GGtGKTP~v~~l~~~l~ 71 (338)
-|||||-+++.||+.+.
T Consensus 10 TasGKS~lAi~LA~~~~ 26 (253)
T 2ze6_A 10 TCSGKTDMAIQIAQETG 26 (253)
T ss_dssp TTSSHHHHHHHHHHHHC
T ss_pred CCCCHHHHHHHHHHHCC
T ss_conf 75278999999999869
No 351
>1ddg_A Sulfite reductase (NADPH) flavoprotein alpha- component; cytochrome P450 reductase, FNR, modular protein, oxidoreductase; HET: FAD; 2.01A {Escherichia coli} SCOP: b.43.4.1 c.25.1.4 PDB: 1ddi_A*
Probab=37.79 E-value=18 Score=15.29 Aligned_cols=24 Identities=21% Similarity=0.234 Sum_probs=12.6
Q ss_pred CCEEEEEE---CCCCHHHHHHHHHHHC
Q ss_conf 86389874---1553578999887401
Q gi|254780401|r 222 GKKVLAFS---GIADTEKFFTTVRQLG 245 (338)
Q Consensus 222 ~k~v~afs---GIa~P~~F~~~L~~~g 245 (338)
..+++.++ |||=-.+|.+.+...+
T Consensus 227 ~~piImIa~GTGIAP~rs~l~~~~~~~ 253 (374)
T 1ddg_A 227 ETPVIMIGPGTGIAPFRAFMQQRAADE 253 (374)
T ss_dssp TSCEEEECCGGGGHHHHHHHHHHHHHT
T ss_pred CCEEEEEECCCCCHHHHHHHHHHHHCC
T ss_conf 752899945856068999999999717
No 352
>3fxa_A SIS domain protein; YP_013136.1, putative sugar-phosphate isomerase, structural genomics, joint center for structural genomics, JCSG; HET: MSE; 1.60A {Listeria monocytogenes str}
Probab=37.75 E-value=18 Score=15.28 Aligned_cols=26 Identities=19% Similarity=0.222 Sum_probs=15.8
Q ss_pred CCCCC-HHHHHHHHHHHHCCCCEEEEE
Q ss_conf 88874-899999999852473159876
Q gi|254780401|r 56 GTGKT-PTALAIAKAVIDKNLKPGFLS 81 (338)
Q Consensus 56 GtGKT-P~v~~l~~~l~~~g~~~~ils 81 (338)
|.|+. ++..+++..|...|+.+..++
T Consensus 52 G~G~S~~ia~~~~~kl~~lG~~~~~~~ 78 (201)
T 3fxa_A 52 GCGTSGVAAKKLVHSFNCIERPAVFLT 78 (201)
T ss_dssp CCTHHHHHHHHHHHHHHHTTCCEEECC
T ss_pred EECHHHHHHHHHHHHHHHCCCCEEECC
T ss_conf 777799999999999986899658579
No 353
>2pr7_A Haloacid dehalogenase/epoxide hydrolase family; NP_599989.1, uncharacterized protein, structural genomics; 1.44A {Corynebacterium glutamicum atcc 13032}
Probab=37.61 E-value=18 Score=15.27 Aligned_cols=30 Identities=13% Similarity=0.039 Sum_probs=17.4
Q ss_pred CCCCCCHHHHHHHHHHHHCCCCEEEEEECC
Q ss_conf 788874899999999852473159876045
Q gi|254780401|r 55 GGTGKTPTALAIAKAVIDKNLKPGFLSRGY 84 (338)
Q Consensus 55 GGtGKTP~v~~l~~~l~~~g~~~~ilsRGY 84 (338)
|..--.|=+..+.+.|+++|++++|+|-+.
T Consensus 15 ~~~~~~~~~~~~l~~lk~~g~~~~i~Tn~~ 44 (137)
T 2pr7_A 15 GTDEDQRRWRNLLAAAKKNGVGTVILSNDP 44 (137)
T ss_dssp SCHHHHHHHHHHHHHHHHTTCEEEEEECSC
T ss_pred CCCCCHHHHHHHHHHHHHCCCEEEEECCCC
T ss_conf 865453889999999998799599988999
No 354
>1t2a_A GDP-mannose 4,6 dehydratase; structural genomics consortium, rossman-fold, short-chain dehydrogenase/reductase, SDR, structural genomics,lyase; HET: NDP GDP; 1.84A {Homo sapiens} SCOP: c.2.1.2
Probab=37.49 E-value=19 Score=15.26 Aligned_cols=29 Identities=21% Similarity=0.300 Sum_probs=22.5
Q ss_pred EEECCCCCCHHHHHHHHHHHHCCCCEEEEEE
Q ss_conf 0007888748999999998524731598760
Q gi|254780401|r 52 FVMGGTGKTPTALAIAKAVIDKNLKPGFLSR 82 (338)
Q Consensus 52 itvGGtGKTP~v~~l~~~l~~~g~~~~ilsR 82 (338)
|.+|||| =+=-+|++.|.++|+.|..+.|
T Consensus 28 LITGatG--fIGs~l~~~Ll~~g~~V~~~~r 56 (375)
T 1t2a_A 28 LITGITG--QDGSYLAEFLLEKGYEVHGIVR 56 (375)
T ss_dssp EEETTTS--HHHHHHHHHHHHTTCEEEEEEC
T ss_pred EEECCCC--HHHHHHHHHHHHCCCEEEEEEC
T ss_conf 9960862--8999999999978498999979
No 355
>2c5a_A GDP-mannose-3', 5'-epimerase; short chain dehydratase/reductase, GDP-gulose, GDP-galactose, keto intermediate, vitamin C, SDR; HET: GDC NAD BTB; 1.4A {Arabidopsis thaliana} SCOP: c.2.1.2 PDB: 2c59_A* 2c54_A* 2c5e_A*
Probab=37.48 E-value=19 Score=15.25 Aligned_cols=30 Identities=17% Similarity=0.010 Sum_probs=24.5
Q ss_pred EEECCCCCCHHHHHHHHHHHHCCCCEEEEEEC
Q ss_conf 00078887489999999985247315987604
Q gi|254780401|r 52 FVMGGTGKTPTALAIAKAVIDKNLKPGFLSRG 83 (338)
Q Consensus 52 itvGGtGKTP~v~~l~~~l~~~g~~~~ilsRG 83 (338)
|++|||| =+=.+|++.|.++|++|.++.|.
T Consensus 33 LVTGatG--fIGs~Lv~~L~~~g~~Vi~~d~~ 62 (379)
T 2c5a_A 33 SITGAGG--FIASHIARRLKHEGHYVIASDWK 62 (379)
T ss_dssp EEETTTS--HHHHHHHHHHHHTTCEEEEEESS
T ss_pred EEECCCC--HHHHHHHHHHHHCCCEEEEEECC
T ss_conf 9989998--89999999999783989999689
No 356
>1kag_A SKI, shikimate kinase I; transferase, structural genomics, PSI, protein structure initiative; 2.05A {Escherichia coli} SCOP: c.37.1.2
Probab=37.39 E-value=9.8 Score=17.22 Aligned_cols=23 Identities=26% Similarity=0.450 Sum_probs=18.1
Q ss_pred CEEEECCEEECCCCCCHHHHHHHHHH
Q ss_conf 88998230007888748999999998
Q gi|254780401|r 45 PVICVGGFVMGGTGKTPTALAIAKAV 70 (338)
Q Consensus 45 pVI~VGNitvGGtGKTP~v~~l~~~l 70 (338)
.||-+|- -|||||-+...||+.|
T Consensus 6 ~Iil~G~---~GsGKSTv~k~La~~l 28 (173)
T 1kag_A 6 NIFLVGP---MGAGKSTIGRQLAQQL 28 (173)
T ss_dssp CEEEECC---TTSCHHHHHHHHHHHT
T ss_pred EEEEECC---CCCCHHHHHHHHHHHH
T ss_conf 3999899---9998899999999994
No 357
>3kcn_A Adenylate cyclase homolog; SGX, PSI 2, structural genomics, protein structure initiative; 2.45A {Rhodopirellula baltica}
Probab=37.29 E-value=11 Score=16.87 Aligned_cols=27 Identities=7% Similarity=0.142 Sum_probs=13.5
Q ss_pred CCCCCCCCHHHHHHHHCCCC-CCEEEEC
Q ss_conf 76346520122566410245-7479971
Q gi|254780401|r 115 AVTIVTSDRKIGVQMLLQEG-VDIIIMD 141 (338)
Q Consensus 115 ~pv~V~~~R~~~~~~~~~~~-~diiIlD 141 (338)
+.|..+.+-.+|...+.+.. +|+||+|
T Consensus 28 ~~v~~a~~g~eAl~~l~~~~~~dlvi~D 55 (151)
T 3kcn_A 28 FEVTTCESGPEALACIKKSDPFSVIMVD 55 (151)
T ss_dssp SEEEEESSHHHHHHHHHHSCCCSEEEEE
T ss_pred CEEEEECCHHHHHHHHHHCCCCEEEEEE
T ss_conf 9899988999999999856997099983
No 358
>2gwr_A DNA-binding response regulator MTRA; two-component regulatory system, transcription regulation, phosphorylation, OMPR family; 2.10A {Mycobacterium tuberculosis} PDB: 3nhz_A
Probab=37.27 E-value=19 Score=15.23 Aligned_cols=31 Identities=16% Similarity=0.144 Sum_probs=20.9
Q ss_pred CCCCCCCCHHHHHHHHCCCCCCEEEECCCCC
Q ss_conf 7634652012256641024574799718322
Q gi|254780401|r 115 AVTIVTSDRKIGVQMLLQEGVDIIIMDDGFH 145 (338)
Q Consensus 115 ~pv~V~~~R~~~~~~~~~~~~diiIlDDGfQ 145 (338)
..|..+.+-.+|...+.+..+|+||+|-.+.
T Consensus 30 ~~v~~a~~~~~al~~~~~~~~DliilD~~lp 60 (238)
T 2gwr_A 30 FDTAVIGDGTQALTAVRELRPDLVLLDLMLP 60 (238)
T ss_dssp CEEEEECCGGGHHHHHHHHCCSEEEEESSCS
T ss_pred CEEEEECCHHHHHHHHHHCCCCEEEEECCCC
T ss_conf 9999989999999999837999999916776
No 359
>1mh1_A RAC1; GTP-binding, GTPase, small G-protein, RHO family, RAS super family; HET: GNP; 1.38A {Homo sapiens} SCOP: c.37.1.8 PDB: 1hh4_A* 2p2l_A* 2h7v_A* 1g4u_R* 1i4d_D* 1i4l_D* 2vrw_A 1e96_A* 1i4t_D* 2rmk_A* 1ryf_A* 1ryh_A* 2fju_A* 1he1_C* 2nz8_A 1foe_B 3bji_C 1ds6_A* 2qme_A* 2ov2_A* ...
Probab=37.26 E-value=13 Score=16.42 Aligned_cols=21 Identities=33% Similarity=0.543 Sum_probs=16.0
Q ss_pred CCEEEECCEEECCCCCCHHHHHHH
Q ss_conf 988998230007888748999999
Q gi|254780401|r 44 IPVICVGGFVMGGTGKTPTALAIA 67 (338)
Q Consensus 44 ~pVI~VGNitvGGtGKTP~v~~l~ 67 (338)
+.|+.||+ .|+|||-++..++
T Consensus 6 iKvvivG~---~~vGKTsli~~~~ 26 (186)
T 1mh1_A 6 IKCVVVGD---GAVGKTCLLISYT 26 (186)
T ss_dssp EEEEEECS---TTSSHHHHHHHHH
T ss_pred EEEEEECC---CCCCHHHHHHHHH
T ss_conf 99999998---9969999999997
No 360
>1d1q_A Tyrosine phosphatase (E.C.3.1.3.48); beta-alpha-beta, hydrolase; HET: 4NP; 1.70A {Saccharomyces cerevisiae} SCOP: c.44.1.1 PDB: 1d2a_A* 1d1p_A*
Probab=37.19 E-value=16 Score=15.64 Aligned_cols=41 Identities=29% Similarity=0.396 Sum_probs=29.1
Q ss_pred CCCCCCEEEECCEEECCCCCCHHHHHHHHHHHH-CCCC---EEEEEECCC
Q ss_conf 338898899823000788874899999999852-4731---598760457
Q gi|254780401|r 40 LHAPIPVICVGGFVMGGTGKTPTALAIAKAVID-KNLK---PGFLSRGYG 85 (338)
Q Consensus 40 ~~~~~pVI~VGNitvGGtGKTP~v~~l~~~l~~-~g~~---~~ilsRGYg 85 (338)
.+..|-.||.||+ .-.|++..+.+.+.+ +|.. +.+-|.|=.
T Consensus 6 ~k~~VLFVC~gN~-----cRSpmAEai~~~~~~~~~l~~~~~~v~SaG~~ 50 (161)
T 1d1q_A 6 PKISVAFIALGNF-----CRSPMAEAIFKHEVEKANLENRFNKIDSFGTS 50 (161)
T ss_dssp CCEEEEEEESSSS-----SHHHHHHHHHHHHHHHTTCGGGEEEEEEEESS
T ss_pred CCCEEEEEECCCH-----HHHHHHHHHHHHHHHHCCCCCCCEEEEEEEEC
T ss_conf 9877999929818-----68999999999999976987771699810001
No 361
>2i1q_A DNA repair and recombination protein RADA; ATPase, recombinase, ATP complex, calcium stimulation, RECA, DMC1; HET: DNA ANP; 1.90A {Methanococcus voltae} SCOP: a.60.4.1 c.37.1.11 PDB: 1xu4_A* 2b21_A* 2fpk_A* 2fpl_A* 2fpm_A* 1t4g_A* 3fyh_A* 2f1j_A* 2f1i_A* 2f1h_A* 3ewa_A* 3ew9_A* 3etl_A* 2gdj_A*
Probab=37.13 E-value=6.5 Score=18.51 Aligned_cols=28 Identities=14% Similarity=-0.056 Sum_probs=21.7
Q ss_pred CCCCCCHHHHHHHHHHHHCCCCEEEEEE
Q ss_conf 7888748999999998524731598760
Q gi|254780401|r 55 GGTGKTPTALAIAKAVIDKNLKPGFLSR 82 (338)
Q Consensus 55 GGtGKTP~v~~l~~~l~~~g~~~~ilsR 82 (338)
-|||||-+++.++-.....+..+++.+-
T Consensus 107 pGsGKT~lalq~a~~~~~~~~~~~~~~~ 134 (322)
T 2i1q_A 107 FGSGKTQIMHQSCVNLQNPEFLFYDEEA 134 (322)
T ss_dssp TTSSHHHHHHHHHHHTTCGGGEECCTTT
T ss_pred CCCCCCHHHHHHHHHHHHCCCCCEEEEE
T ss_conf 8877379999999999740687505430
No 362
>3hu3_A Transitional endoplasmic reticulum ATPase; VCP, transport protein; HET: ATG; 2.20A {Homo sapiens} PDB: 3hu2_A* 3hu1_A* 1e32_A* 1s3s_A* 2pjh_B
Probab=37.07 E-value=9.2 Score=17.41 Aligned_cols=15 Identities=20% Similarity=0.118 Sum_probs=8.6
Q ss_pred CCCCHHHHHHHHHHH
Q ss_conf 348989999999975
Q gi|254780401|r 258 AHLSDKKIAYLLDQA 272 (338)
Q Consensus 258 h~ys~~dl~~i~~~a 272 (338)
|-|+..||..+.++|
T Consensus 404 ~GfsgaDL~~L~~eA 418 (489)
T 3hu3_A 404 HGHVGADLAALCSEA 418 (489)
T ss_dssp TTCCHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHH
T ss_conf 998999999999999
No 363
>1s96_A Guanylate kinase, GMP kinase; E.coli, dimer, SAD, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.1 PDB: 2an9_A* 2anb_A* 2anc_A 2f3r_A* 2f3t_A*
Probab=37.02 E-value=11 Score=16.91 Aligned_cols=24 Identities=21% Similarity=0.199 Sum_probs=16.2
Q ss_pred CCCCCCHHHHHHHHHHHHCCCCEE
Q ss_conf 788874899999999852473159
Q gi|254780401|r 55 GGTGKTPTALAIAKAVIDKNLKPG 78 (338)
Q Consensus 55 GGtGKTP~v~~l~~~l~~~g~~~~ 78 (338)
-|+|||.+...|.+.....+++.+
T Consensus 25 SG~GK~tL~~~L~~~~p~~~~~~~ 48 (219)
T 1s96_A 25 SGAGKSSLIQALLKTQPLYDTQVS 48 (219)
T ss_dssp TTSCHHHHHHHHHHHSCTTTEEEC
T ss_pred CCCCHHHHHHHHHHHCCCCCCEEE
T ss_conf 999999999999863986685067
No 364
>2x8a_A Nuclear valosin-containing protein-like; nuclear protein; 2.60A {Homo sapiens}
Probab=36.85 E-value=10 Score=17.12 Aligned_cols=34 Identities=32% Similarity=0.302 Sum_probs=23.8
Q ss_pred CCCCEEEECCEEECCCCCCHHHHHHHHHHHHCCCCEEEEE
Q ss_conf 8898899823000788874899999999852473159876
Q gi|254780401|r 42 APIPVICVGGFVMGGTGKTPTALAIAKAVIDKNLKPGFLS 81 (338)
Q Consensus 42 ~~~pVI~VGNitvGGtGKTP~v~~l~~~l~~~g~~~~ils 81 (338)
.|--|+..|-- |||||-++.++|+.+ |.....++
T Consensus 43 ~~~giLL~Gpp---GtGKT~la~aia~~~---~~~~~~~~ 76 (274)
T 2x8a_A 43 TPAGVLLAGPP---GCGKTLLAKAVANES---GLNFISVK 76 (274)
T ss_dssp CCSEEEEESST---TSCHHHHHHHHHHHT---TCEEEEEE
T ss_pred CCCEEEEECCC---CCCHHHHHHHHHHHH---CCCEEEEE
T ss_conf 88726887899---988628999999982---78718976
No 365
>1m2o_B GTP binding, GTP-binding protein SAR1; zinc-finger, beta barrel, VWA domain, gelsolin domain,; HET: GNP; 2.50A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 2qtv_B*
Probab=36.73 E-value=16 Score=15.80 Aligned_cols=36 Identities=17% Similarity=0.317 Sum_probs=20.3
Q ss_pred HHHHHHHHHHHHHHCCCCCCCCCEEEECCEEECCCCCCHHHHHH
Q ss_conf 99999999999740464338898899823000788874899999
Q gi|254780401|r 23 SWIYSFISSKLMKRGQRLHAPIPVICVGGFVMGGTGKTPTALAI 66 (338)
Q Consensus 23 s~iy~~~~~~~~~~~~~~~~~~pVI~VGNitvGGtGKTP~v~~l 66 (338)
+|++.++..++.. +-...|+.|| -.|+|||-++..|
T Consensus 8 ~~~~~~~~~~~~~-----~k~~KI~ivG---~~~~GKTsLl~~l 43 (190)
T 1m2o_B 8 GWFRDVLASLGLW-----NKHGKLLFLG---LDNAGKTTLLHML 43 (190)
T ss_dssp ---------------------CEEEEEE---STTSSHHHHHHHH
T ss_pred HHHHHHHHHCCCC-----CCCCEEEEEC---CCCCCHHHHHHHH
T ss_conf 9999999853345-----6843899999---9999989999999
No 366
>2iyv_A Shikimate kinase, SK; transferase, aromatic amino acid biosynthesis, P-loop kinase, metal- binding, shikimate pathway; HET: ADP; 1.35A {Mycobacterium tuberculosis} SCOP: c.37.1.2 PDB: 2iyr_A* 2iyq_A* 2iyt_A 2iyu_A* 2iys_A* 2iyw_A* 2iyx_A* 2iyy_A* 2iyz_A* 2g1k_A* 1l4y_A* 1u8a_A* 1we2_A* 1zyu_A* 2dfn_A* 2dft_A* 2g1j_A 1l4u_A* 3baf_A*
Probab=36.64 E-value=12 Score=16.61 Aligned_cols=22 Identities=36% Similarity=0.638 Sum_probs=17.6
Q ss_pred EEEECCEEECCCCCCHHHHHHHHHH
Q ss_conf 8998230007888748999999998
Q gi|254780401|r 46 VICVGGFVMGGTGKTPTALAIAKAV 70 (338)
Q Consensus 46 VI~VGNitvGGtGKTP~v~~l~~~l 70 (338)
+|-+| +-|+|||-+...|++.|
T Consensus 5 Iil~G---~~GsGKSTiak~La~~L 26 (184)
T 2iyv_A 5 AVLVG---LPGSGKSTIGRRLAKAL 26 (184)
T ss_dssp EEEEC---STTSSHHHHHHHHHHHH
T ss_pred EEEEC---CCCCCHHHHHHHHHHHH
T ss_conf 99987---99998899999999996
No 367
>1jbk_A CLPB protein; beta barrel, chaperone; 1.80A {Escherichia coli} SCOP: c.37.1.20
Probab=36.62 E-value=14 Score=16.17 Aligned_cols=28 Identities=25% Similarity=0.374 Sum_probs=21.5
Q ss_pred CCCEEEECCEEECCCCCCHHHHHHHHHHHHC
Q ss_conf 8988998230007888748999999998524
Q gi|254780401|r 43 PIPVICVGGFVMGGTGKTPTALAIAKAVIDK 73 (338)
Q Consensus 43 ~~pVI~VGNitvGGtGKTP~v~~l~~~l~~~ 73 (338)
.-.++-||.- |+|||-+|..||+.+.+.
T Consensus 43 k~n~lLVG~p---GVGKTalv~~LA~ri~~~ 70 (195)
T 1jbk_A 43 KNNPVLIGEP---GVGKTAIVEGLAQRIING 70 (195)
T ss_dssp SCEEEEECCT---TSCHHHHHHHHHHHHHHT
T ss_pred CCCCEEECCC---CCCCHHHHHHHHHHHHHC
T ss_conf 8991685278---767489999999999807
No 368
>2cnd_A NADH-dependent nitrate reductase; nitrate assimilating enzyme, oxidoreductase, nitrogenous acceptor; HET: FAD; 2.50A {Zea mays} SCOP: b.43.4.2 c.25.1.1 PDB: 1cnf_A* 1cne_A*
Probab=36.47 E-value=13 Score=16.45 Aligned_cols=48 Identities=6% Similarity=0.138 Sum_probs=21.2
Q ss_pred CCEEEEEE-CCCCHHHHHHHHHHH---C------CCCCCCCCCCCCCCCCHHHHHHHHHH
Q ss_conf 86389874-155357899988740---1------00001221433234898999999997
Q gi|254780401|r 222 GKKVLAFS-GIADTEKFFTTVRQL---G------ALIEQCYSFGDHAHLSDKKIAYLLDQ 271 (338)
Q Consensus 222 ~k~v~afs-GIa~P~~F~~~L~~~---g------~~i~~~~~fpDHh~ys~~dl~~i~~~ 271 (338)
.++++.++ |+|= ..|..+++++ + +.+......+++..| .++++++.+.
T Consensus 136 ~~~ivliagGtGI-tP~ls~l~~ll~~~~~~~~~i~l~~~~r~~~d~~~-~~el~~l~~~ 193 (270)
T 2cnd_A 136 ARRLAMICGGSGI-TPMYQIIQAVLRDQPEDHTEMHLVYANRTEDDILL-RDELDRWAAE 193 (270)
T ss_dssp CSEEEEEEEGGGH-HHHHHHHHHHHHTTTTCCCEEEEEEEESCGGGCTT-HHHHHHHHHH
T ss_pred CCEEEEEEECCCH-HHHHHHHHHHHHHCCCCCCEEEEEEEECCHHHHHH-HHHHHHHHHH
T ss_conf 7548999826456-18999999999747677863999983288588302-8999999986
No 369
>2pv7_A T-protein [includes: chorismate mutase (EC 5.4.99.5) (CM) and prephenate dehydrogenase...; 1574749, chorismate mutase type II; HET: MSE TYR NAD; 2.00A {Haemophilus influenzae} SCOP: a.100.1.12 c.2.1.6
Probab=36.46 E-value=19 Score=15.15 Aligned_cols=27 Identities=26% Similarity=0.337 Sum_probs=20.5
Q ss_pred ECCCCCCHHHHHHHHHHHHCCCCEEEEEE
Q ss_conf 07888748999999998524731598760
Q gi|254780401|r 54 MGGTGKTPTALAIAKAVIDKNLKPGFLSR 82 (338)
Q Consensus 54 vGGtGKTP~v~~l~~~l~~~g~~~~ilsR 82 (338)
+||.|+ +=-++++.|++.|+.|.+..|
T Consensus 27 IGG~G~--mG~sla~~l~~~G~~V~~~d~ 53 (298)
T 2pv7_A 27 VGGYGK--LGGLFARYLRASGYPISILDR 53 (298)
T ss_dssp ETTTSH--HHHHHHHHHHTTTCCEEEECT
T ss_pred EECCCH--HHHHHHHHHHHCCCEEEEECC
T ss_conf 926986--789999999968995999749
No 370
>1gvh_A Flavohemoprotein; oxidoreductase, NADP, heme, flavoprotein, FAD, iron transpor; HET: FAD HEM; 2.19A {Escherichia coli} SCOP: a.1.1.2 b.43.4.2 c.25.1.5
Probab=36.03 E-value=19 Score=15.10 Aligned_cols=49 Identities=14% Similarity=0.165 Sum_probs=22.7
Q ss_pred CCCEEEEEE-CCCCHHHHHHHHHH---HCC----CCCCCCCCCCCCCCCHHHHHHHHHH
Q ss_conf 686389874-15535789998874---010----0001221433234898999999997
Q gi|254780401|r 221 SGKKVLAFS-GIADTEKFFTTVRQ---LGA----LIEQCYSFGDHAHLSDKKIAYLLDQ 271 (338)
Q Consensus 221 ~~k~v~afs-GIa~P~~F~~~L~~---~g~----~i~~~~~fpDHh~ys~~dl~~i~~~ 271 (338)
.+++++.++ |+|= ..+..+++. .+- .+...-.-+|.+.| .++++.+.+.
T Consensus 258 ~~~~lvlIAgGtGI-tP~~s~l~~l~~~~~~~~v~L~~g~r~~~~~~~-~~eL~~l~~~ 314 (396)
T 1gvh_A 258 DDTPVTLISAGVGQ-TPMLAMLDTLAKAGHTAQVNWFHAAENGDVHAF-ADEVKELGQS 314 (396)
T ss_dssp TTCCEEEEEEGGGG-HHHHHHHHHHHHHTCCSCEEEEEEESCTTTCCS-HHHHHHHHHT
T ss_pred CCCCEEEEECCCCC-CCHHHHHHHHHHHHCCCCEEECCCCCCHHHHHH-HHHHHHHHHH
T ss_conf 88847999468788-848899999997414541021334689899998-9999999986
No 371
>1xwi_A SKD1 protein; VPS4B, AAA ATPase, protein transport; 2.80A {Homo sapiens}
Probab=35.96 E-value=11 Score=16.93 Aligned_cols=23 Identities=35% Similarity=0.429 Sum_probs=16.8
Q ss_pred EEEECCEEECCCCCCHHHHHHHHHHH
Q ss_conf 89982300078887489999999985
Q gi|254780401|r 46 VICVGGFVMGGTGKTPTALAIAKAVI 71 (338)
Q Consensus 46 VI~VGNitvGGtGKTP~v~~l~~~l~ 71 (338)
|+..|- =|||||-++.++|+.+.
T Consensus 48 vLL~GP---pGtGKT~la~aiA~e~~ 70 (322)
T 1xwi_A 48 ILLFGP---PGTGKSYLAKAVATEAN 70 (322)
T ss_dssp EEEESS---SSSCHHHHHHHHHHHTT
T ss_pred EEEECC---CCCCHHHHHHHHHHHHC
T ss_conf 688898---99988999999999705
No 372
>1xhf_A DYE resistance, aerobic respiration control protein ARCA; two-component system, gene regulation, transcription factor, anoxic redox control; 2.15A {Escherichia coli} SCOP: c.23.1.1 PDB: 1xhe_A
Probab=35.89 E-value=20 Score=15.08 Aligned_cols=26 Identities=23% Similarity=0.307 Sum_probs=15.8
Q ss_pred CCCCCCCHHHHHHHHCCCCCCEEEEC
Q ss_conf 63465201225664102457479971
Q gi|254780401|r 116 VTIVTSDRKIGVQMLLQEGVDIIIMD 141 (338)
Q Consensus 116 pv~V~~~R~~~~~~~~~~~~diiIlD 141 (338)
.|..+.+-.+|...+.+..+|+||+|
T Consensus 29 ~v~~a~~~~~al~~l~~~~~dlii~D 54 (123)
T 1xhf_A 29 DVFEATDGAEMHQILSEYDINLVIMD 54 (123)
T ss_dssp EEEEESSHHHHHHHHHHSCCSEEEEC
T ss_pred EEEEECCHHHHHHHHHCCCCCEEEEE
T ss_conf 99998999999999970899999996
No 373
>1oc2_A DTDP-glucose 4,6-dehydratase; lyase, NADH, rhamnose; HET: TDX NAD; 1.5A {Streptococcus suis} SCOP: c.2.1.2 PDB: 1ker_A* 1ket_A* 1kep_A*
Probab=35.82 E-value=20 Score=15.08 Aligned_cols=30 Identities=17% Similarity=0.169 Sum_probs=23.6
Q ss_pred EEECCCCCCHHHHHHHHHHHHCCCCEEEEEEC
Q ss_conf 00078887489999999985247315987604
Q gi|254780401|r 52 FVMGGTGKTPTALAIAKAVIDKNLKPGFLSRG 83 (338)
Q Consensus 52 itvGGtGKTP~v~~l~~~l~~~g~~~~ilsRG 83 (338)
|.+|||| =+=.+|+++|.++|+.+-++.|.
T Consensus 8 LITG~tG--fiG~~l~~~Ll~~g~~v~v~~~d 37 (348)
T 1oc2_A 8 IVTGGAG--FIGSNFVHYVYNNHPDVHVTVLD 37 (348)
T ss_dssp EEETTTS--HHHHHHHHHHHHHCTTCEEEEEE
T ss_pred EEECCCC--HHHHHHHHHHHHCCCCEEEEEEE
T ss_conf 9947886--89999999999779973999983
No 374
>3eq2_A Probable two-component response regulator; adaptor sigmas, signaling protein; 3.40A {Pseudomonas aeruginosa} PDB: 3f7a_A
Probab=35.64 E-value=13 Score=16.42 Aligned_cols=47 Identities=21% Similarity=0.359 Sum_probs=33.3
Q ss_pred CCCCCCCCHHHHHHHHCCCCCCEEEEC------CCCC----CCCCCCEEEEEEECCC
Q ss_conf 763465201225664102457479971------8322----3441230699996184
Q gi|254780401|r 115 AVTIVTSDRKIGVQMLLQEGVDIIIMD------DGFH----SADLQADFSLIVVNSH 161 (338)
Q Consensus 115 ~pv~V~~~R~~~~~~~~~~~~diiIlD------DGfQ----h~~l~rdl~Ivl~d~~ 161 (338)
..|..+.+-.+|...+.+..+|+||+| ||++ =++..+++-++++.+.
T Consensus 30 ~~v~~a~~~~~al~~~~~~~~dlvl~D~~mP~~~G~e~~~~i~~~~~~~pvi~lt~~ 86 (394)
T 3eq2_A 30 FKVLQALNGLQGLQIFESEQPDLVICDLRMPQIDGLELIRRIRQTASETPIIVLSGA 86 (394)
T ss_dssp EEEEECSSHHHHHHHHHHSCCSEEEECCCSSSSCTHHHHHHHHHTTCCCCEEEC---
T ss_pred CEEEEECCHHHHHHHHHCCCCCEEEEECCCCCCCHHHHHHHHHHCCCCCCEEEEEEC
T ss_conf 999998999999999863899999998978999899999999853999838999805
No 375
>2efe_B Small GTP-binding protein-like; GEF, GTPase, VPS9, nucleotide, transport protein; HET: GNH; 2.08A {Arabidopsis thaliana} PDB: 2efd_B 2efc_B* 2efh_B*
Probab=35.63 E-value=11 Score=16.78 Aligned_cols=26 Identities=23% Similarity=0.368 Sum_probs=18.5
Q ss_pred CCCCCCEEEECCEEECCCCCCHHHHHHHH
Q ss_conf 33889889982300078887489999999
Q gi|254780401|r 40 LHAPIPVICVGGFVMGGTGKTPTALAIAK 68 (338)
Q Consensus 40 ~~~~~pVI~VGNitvGGtGKTP~v~~l~~ 68 (338)
....+.|+.||. .|+|||-++..++.
T Consensus 9 k~~~~Ki~vvG~---~~vGKTsLi~~~~~ 34 (181)
T 2efe_B 9 KSINAKLVLLGD---VGAGKSSLVLRFVK 34 (181)
T ss_dssp -CEEEEEEEECC---TTSCHHHHHHHHHH
T ss_pred CCCCEEEEEECC---CCCCHHHHHHHHHH
T ss_conf 820759999998---99689999999985
No 376
>3fe2_A Probable ATP-dependent RNA helicase DDX5; DEAD, ADP, ATP-binding, hydrolase, nucleotide- binding, RNA-binding, methylation, mRNA processing; HET: ADP; 2.60A {Homo sapiens}
Probab=35.39 E-value=20 Score=15.03 Aligned_cols=18 Identities=28% Similarity=0.353 Sum_probs=8.2
Q ss_pred EECCCCCC-HHHHHHHHHH
Q ss_conf 00788874-8999999998
Q gi|254780401|r 53 VMGGTGKT-PTALAIAKAV 70 (338)
Q Consensus 53 tvGGtGKT-P~v~~l~~~l 70 (338)
.-=||||| -+++-+...+
T Consensus 73 a~TGsGKTlay~lpi~~~~ 91 (242)
T 3fe2_A 73 AQTGSGKTLSYLLPAIVHI 91 (242)
T ss_dssp ECTTSCHHHHHHHHHHHHH
T ss_pred CCCCCCCCCCCCCCHHHHH
T ss_conf 2799996020246113221
No 377
>2qen_A Walker-type ATPase; unknown function; HET: ADP; 2.25A {Pyrococcus abyssi}
Probab=35.31 E-value=8.7 Score=17.59 Aligned_cols=21 Identities=14% Similarity=0.012 Sum_probs=15.5
Q ss_pred EECCCCCCHHHHHHHHHHHHC
Q ss_conf 007888748999999998524
Q gi|254780401|r 53 VMGGTGKTPTALAIAKAVIDK 73 (338)
Q Consensus 53 tvGGtGKTP~v~~l~~~l~~~ 73 (338)
=.+|.|||-++..+++.++..
T Consensus 38 G~~GiGKTsL~~~~~~~~~~~ 58 (350)
T 2qen_A 38 GIRRVGKSSLLRAFLNERPGI 58 (350)
T ss_dssp CCTTSSHHHHHHHHHHHSSEE
T ss_pred CCCCCCHHHHHHHHHHHCCCC
T ss_conf 499997899999999856775
No 378
>1z63_A Helicase of the SNF2/RAD54 hamily; protein-DNA complex, hydrolase/DNA complex complex; 3.00A {Sulfolobus solfataricus} SCOP: c.37.1.19 c.37.1.19 PDB: 1z6a_A
Probab=35.01 E-value=20 Score=14.99 Aligned_cols=19 Identities=32% Similarity=0.443 Sum_probs=16.4
Q ss_pred CCCCCHHHHHHHHHHHHCC
Q ss_conf 8887489999999985247
Q gi|254780401|r 56 GTGKTPTALAIAKAVIDKN 74 (338)
Q Consensus 56 GtGKTP~v~~l~~~l~~~g 74 (338)
|+|||=.++.++..+.+++
T Consensus 66 GlGKT~~ai~~~~~~~~~~ 84 (500)
T 1z63_A 66 GLGKTLQTIAVFSDAKKEN 84 (500)
T ss_dssp TSCHHHHHHHHHHHHHHTT
T ss_pred CHHHHHHHHHHHHHHHHHC
T ss_conf 6519899999999999848
No 379
>2g4r_A MOGA, molybdopterin biosynthesis MOG protein; anomalous substructure of MOGA, biosynthetic protein; 1.92A {Mycobacterium tuberculosis} PDB: 3oi9_A
Probab=34.94 E-value=20 Score=14.98 Aligned_cols=18 Identities=6% Similarity=-0.138 Sum_probs=11.9
Q ss_pred EEEECCCCHHHHHHHHHH
Q ss_conf 987415535789998874
Q gi|254780401|r 226 LAFSGIADTEKFFTTVRQ 243 (338)
Q Consensus 226 ~afsGIa~P~~F~~~L~~ 243 (338)
..||==|+|.....+++-
T Consensus 124 ~i~~LPG~P~a~~~~l~~ 141 (160)
T 2g4r_A 124 LIINLPGSPGGVRDGLGV 141 (160)
T ss_dssp EEEEECSSHHHHHHHHHH
T ss_pred EEEECCCCHHHHHHHHHH
T ss_conf 999889996999999999
No 380
>2pd4_A Enoyl-[acyl-carrier-protein] reductase [NADH]; antibacterial target, type II fatty acid biosynthesis, enoyl-ACP-reductase, FABI; HET: NAD DCN; 2.30A {Helicobacter pylori} SCOP: c.2.1.2 PDB: 2pd3_A*
Probab=34.89 E-value=20 Score=14.98 Aligned_cols=32 Identities=16% Similarity=0.291 Sum_probs=24.7
Q ss_pred EEECCCCCCHHHHHHHHHHHHCCCCEEEEEEC
Q ss_conf 00078887489999999985247315987604
Q gi|254780401|r 52 FVMGGTGKTPTALAIAKAVIDKNLKPGFLSRG 83 (338)
Q Consensus 52 itvGGtGKTP~v~~l~~~l~~~g~~~~ilsRG 83 (338)
|.+||+|=.=+=..+|+.|.++|.+|++..|.
T Consensus 10 lITGaag~~GIG~aiA~~la~~G~~V~i~~r~ 41 (275)
T 2pd4_A 10 LIVGVANNKSIAYGIAQSCFNQGATLAFTYLN 41 (275)
T ss_dssp EEECCCSTTSHHHHHHHHHHTTTCEEEEEESS
T ss_pred EEECCCCCCHHHHHHHHHHHHCCCEEEEEECC
T ss_conf 99899998489999999999879999999688
No 381
>1byk_A Protein (trehalose operon repressor); LACI family, phosphate binding, protein structure, trehalose repressor, gene regulation; HET: T6P; 2.50A {Escherichia coli} SCOP: c.93.1.1
Probab=34.89 E-value=20 Score=14.98 Aligned_cols=20 Identities=10% Similarity=0.252 Sum_probs=12.9
Q ss_pred HHHHHHHHHHHCCCCEEEEE
Q ss_conf 99999999852473159876
Q gi|254780401|r 62 TALAIAKAVIDKNLKPGFLS 81 (338)
Q Consensus 62 ~v~~l~~~l~~~g~~~~ils 81 (338)
++..+.+.++++||++.+..
T Consensus 20 ~~~~i~~~~~~~gy~~~i~~ 39 (255)
T 1byk_A 20 AVQTMLPAFYEQGYDPIMME 39 (255)
T ss_dssp HHHHHHHHHHHHTCEEEEEE
T ss_pred HHHHHHHHHHHCCCEEEEEE
T ss_conf 99999999998599899994
No 382
>1y1p_A ARII, aldehyde reductase II; rossmann fold, short chain dehydrogenase reductase, oxidoreductase; HET: NMN AMP; 1.60A {Sporidiobolus salmonicolor} SCOP: c.2.1.2 PDB: 1ujm_A* 1zze_A
Probab=34.78 E-value=20 Score=14.96 Aligned_cols=29 Identities=21% Similarity=0.316 Sum_probs=22.7
Q ss_pred EEECCCCCCHHHHHHHHHHHHCCCCEEEEEE
Q ss_conf 0007888748999999998524731598760
Q gi|254780401|r 52 FVMGGTGKTPTALAIAKAVIDKNLKPGFLSR 82 (338)
Q Consensus 52 itvGGtGKTP~v~~l~~~l~~~g~~~~ilsR 82 (338)
+.+||||= +=.+|++.|.++|+.|..+.|
T Consensus 15 LVTG~tGf--IGs~l~~~Ll~~G~~V~~~vr 43 (342)
T 1y1p_A 15 LVTGANGF--VASHVVEQLLEHGYKVRGTAR 43 (342)
T ss_dssp EEETTTSH--HHHHHHHHHHHTTCEEEEEES
T ss_pred EEECCCCH--HHHHHHHHHHHCCCEEEEEEC
T ss_conf 99899789--999999999978598999967
No 383
>1p8a_A Protein tyrosine phosphatase; hydrolase; NMR {Tritrichomonas foetus} SCOP: c.44.1.1
Probab=34.68 E-value=3.8 Score=20.17 Aligned_cols=36 Identities=14% Similarity=0.369 Sum_probs=25.5
Q ss_pred CCCCCEEEECCEEECCCCCCHHHHHHHHHHHHCCCCEEEEEEC
Q ss_conf 3889889982300078887489999999985247315987604
Q gi|254780401|r 41 HAPIPVICVGGFVMGGTGKTPTALAIAKAVIDKNLKPGFLSRG 83 (338)
Q Consensus 41 ~~~~pVI~VGNitvGGtGKTP~v~~l~~~l~~~g~~~~ilsRG 83 (338)
+..|-.||.||+ ...||+.+|.+.+.... .-+.|.|
T Consensus 4 k~~VLFVC~gN~-----cRSpmAEal~~~~~~~~--~~v~SAg 39 (146)
T 1p8a_A 4 KKAVLFVCLGNI-----CRSPACEGICRDMVGDK--LIIDSAA 39 (146)
T ss_dssp CCCEEEESSSSC-----SSSTTHHHHHHHHHSSC--SSCEEEC
T ss_pred CCEEEEEECCCH-----HHHHHHHHHHHHHCCCC--CCEEEEE
T ss_conf 998999979858-----89999999999866577--6346777
No 384
>3ch4_B Pmkase, phosphomevalonate kinase; parallel beta-sheet with the strand order 23145, walker A motif, cholesterol biosynthesis, lipid synthesis; 1.76A {Homo sapiens}
Probab=34.65 E-value=17 Score=15.44 Aligned_cols=27 Identities=22% Similarity=0.261 Sum_probs=17.6
Q ss_pred CCCC--EEEE-CCEEECCCCCCHHHHHHHHHHH
Q ss_conf 8898--8998-2300078887489999999985
Q gi|254780401|r 42 APIP--VICV-GGFVMGGTGKTPTALAIAKAVI 71 (338)
Q Consensus 42 ~~~p--VI~V-GNitvGGtGKTP~v~~l~~~l~ 71 (338)
.+.| ||.| |. -|+|||-++.+|++.+.
T Consensus 7 ~~~pk~II~ItG~---~GSGKsTva~~L~e~~~ 36 (202)
T 3ch4_B 7 GGAPRLVLLFSGK---RKSGKDFVTEALQSRLG 36 (202)
T ss_dssp BCCCSEEEEEEEC---TTSSHHHHHHHHHHHHC
T ss_pred CCCCCEEEEEECC---CCCCHHHHHHHHHHHCC
T ss_conf 9998389998897---99999999999999729
No 385
>3crn_A Response regulator receiver domain protein, CHEY- like; structural genomics, signal regulator receiver domain; HET: PHD; 1.58A {Methanospirillum hungatei jf-1}
Probab=34.47 E-value=21 Score=14.93 Aligned_cols=26 Identities=8% Similarity=0.135 Sum_probs=14.7
Q ss_pred CCCCCCCHHHHHHHHCCCCCCEEEEC
Q ss_conf 63465201225664102457479971
Q gi|254780401|r 116 VTIVTSDRKIGVQMLLQEGVDIIIMD 141 (338)
Q Consensus 116 pv~V~~~R~~~~~~~~~~~~diiIlD 141 (338)
.|..+.+-.+|...+.+..+|+||+|
T Consensus 29 ~v~~a~~~~~al~~l~~~~~dlvllD 54 (132)
T 3crn_A 29 EVEIAATAGEGLAKIENEFFNLALFX 54 (132)
T ss_dssp EEEEESSHHHHHHHHHHSCCSEEEEC
T ss_pred EEEECCCHHHHHHHHHHCCCCEEEEC
T ss_conf 79970999999999985799999970
No 386
>2fna_A Conserved hypothetical protein; 13814777, structural genomics, joint center for structural genomics, JCSG; HET: MSE ADP; 2.00A {Sulfolobus solfataricus P2} SCOP: a.4.5.11 c.37.1.20
Probab=34.45 E-value=13 Score=16.34 Aligned_cols=31 Identities=13% Similarity=-0.039 Sum_probs=19.6
Q ss_pred ECCCCCCHHHHHHHHHHHHCCCCEEEEEECCCC
Q ss_conf 078887489999999985247315987604578
Q gi|254780401|r 54 MGGTGKTPTALAIAKAVIDKNLKPGFLSRGYGR 86 (338)
Q Consensus 54 vGGtGKTP~v~~l~~~l~~~g~~~~ilsRGYg~ 86 (338)
.+|+|||-++..+++.+... -+-+..+.+..
T Consensus 38 ~~GiGKTsLl~~~~~~~~~~--~~~~~~~~~~~ 68 (357)
T 2fna_A 38 LRRTGKSSIIKIGINELNLP--YIYLDLRKFEE 68 (357)
T ss_dssp STTSSHHHHHHHHHHHHTCC--EEEEEGGGGTT
T ss_pred CCCCCHHHHHHHHHHHCCCC--EEEEEEEECCC
T ss_conf 99998999999999976997--69999762454
No 387
>3bre_A Probable two-component response regulator; protein-nucleotide complex, signaling protein; HET: C2E; 2.40A {Pseudomonas aeruginosa PAO1} PDB: 3i5a_A*
Probab=34.31 E-value=16 Score=15.78 Aligned_cols=46 Identities=24% Similarity=0.283 Sum_probs=31.6
Q ss_pred CCCCCCCHHHHHHHHCCCCCCEEEEC------CCCCC------CCCCCEEEEEEECCC
Q ss_conf 63465201225664102457479971------83223------441230699996184
Q gi|254780401|r 116 VTIVTSDRKIGVQMLLQEGVDIIIMD------DGFHS------ADLQADFSLIVVNSH 161 (338)
Q Consensus 116 pv~V~~~R~~~~~~~~~~~~diiIlD------DGfQh------~~l~rdl~Ivl~d~~ 161 (338)
.|..+.+=.+|.+.+.+..+|+||+| ||++= ..-.+++-|+++.+.
T Consensus 45 ~v~~a~~g~eal~~~~~~~pDlvllD~~mP~~dGlel~~~iR~~~~~~~~pii~lt~~ 102 (358)
T 3bre_A 45 DFHFCSDPQQAVAVANQIKPTVILQDLVMPGVDGLTLLAAYRGNPATRDIPIIVLSTK 102 (358)
T ss_dssp EEEEECCHHHHHHHHHHHCCSEEEEESBCSSSBHHHHHHHHTTSTTTTTSCEEEEESS
T ss_pred EEEEECCHHHHHHHHHHCCCCEEEECCCCCCCCHHHHHHHHHHCCCCCCCEEEEECCC
T ss_conf 9999899999999998449999998088899999999999973645579629996354
No 388
>2vli_A Antibiotic resistance protein; transferase, tunicamycin, phosphotransferase; 1.95A {Deinococcus radiodurans}
Probab=34.29 E-value=12 Score=16.50 Aligned_cols=27 Identities=33% Similarity=0.460 Sum_probs=18.9
Q ss_pred CCCEEEE-CCEEECCCCCCHHHHHHHHHHHH
Q ss_conf 8988998-23000788874899999999852
Q gi|254780401|r 43 PIPVICV-GGFVMGGTGKTPTALAIAKAVID 72 (338)
Q Consensus 43 ~~pVI~V-GNitvGGtGKTP~v~~l~~~l~~ 72 (338)
+-|+|.| |. =|||||-+...|++.|..
T Consensus 4 ~~~iI~i~G~---sGsGKSTva~~La~~l~~ 31 (183)
T 2vli_A 4 RSPIIWINGP---FGVGKTHTAHTLHERLPG 31 (183)
T ss_dssp -CCEEEEECC---C----CHHHHHHHHHSTT
T ss_pred CCEEEEEECC---CCCCHHHHHHHHHHHHCC
T ss_conf 8808999999---883499999999998399
No 389
>3a8t_A Adenylate isopentenyltransferase; rossmann fold protein; HET: ATP; 2.37A {Humulus lupulus}
Probab=34.27 E-value=21 Score=14.91 Aligned_cols=33 Identities=15% Similarity=0.252 Sum_probs=22.9
Q ss_pred CCCEEEECCEEECCCCCCHHHHHHHHHHHHCCCCEEEEEE
Q ss_conf 8988998230007888748999999998524731598760
Q gi|254780401|r 43 PIPVICVGGFVMGGTGKTPTALAIAKAVIDKNLKPGFLSR 82 (338)
Q Consensus 43 ~~pVI~VGNitvGGtGKTP~v~~l~~~l~~~g~~~~ilsR 82 (338)
+-+||+| +=.=|||||-+++.||+.| ..-|||=
T Consensus 39 k~kvI~I--~GpTasGKT~lAi~LA~~l-----~~eIIsa 71 (339)
T 3a8t_A 39 KEKLLVL--MGATGTGKSRLSIDLAAHF-----PLEVINS 71 (339)
T ss_dssp CCEEEEE--ECSTTSSHHHHHHHHHTTS-----CEEEEEC
T ss_pred CCCEEEE--ECCCCCCHHHHHHHHHHHC-----CCEEEEC
T ss_conf 8867999--8988428999999999987-----9979952
No 390
>3cnb_A DNA-binding response regulator, MERR family; signal receiver domain, DNA binding protein, protein structure initiative, PSI-2; 2.00A {Colwellia psychrerythraea 34H}
Probab=34.11 E-value=11 Score=16.74 Aligned_cols=25 Identities=12% Similarity=0.167 Sum_probs=11.1
Q ss_pred CCCCCCHHHHHHHHCCCCCCEEEEC
Q ss_conf 3465201225664102457479971
Q gi|254780401|r 117 TIVTSDRKIGVQMLLQEGVDIIIMD 141 (338)
Q Consensus 117 v~V~~~R~~~~~~~~~~~~diiIlD 141 (338)
|.++.+-.+|...+.+..+|+||+|
T Consensus 37 v~~a~~g~eAl~~~~~~~pDlillD 61 (143)
T 3cnb_A 37 IKIAYNPFDAGDLLHTVKPDVVMLD 61 (143)
T ss_dssp EEEECSHHHHHHHHHHTCCSEEEEE
T ss_pred EEEECCHHHHHHHHHHCCCCEEEEE
T ss_conf 9998999999999972799999980
No 391
>2rh8_A Anthocyanidin reductase; flavonoids, rossmann fold, short chain dehydrogenase/reductase, oxidoreductase; 2.22A {Vitis vinifera} PDB: 3hfs_A
Probab=34.00 E-value=21 Score=14.88 Aligned_cols=33 Identities=27% Similarity=0.326 Sum_probs=25.2
Q ss_pred EEECCCCCCHHHHHHHHHHHHCCCCEEEEEECCCC
Q ss_conf 00078887489999999985247315987604578
Q gi|254780401|r 52 FVMGGTGKTPTALAIAKAVIDKNLKPGFLSRGYGR 86 (338)
Q Consensus 52 itvGGtGKTP~v~~l~~~l~~~g~~~~ilsRGYg~ 86 (338)
|++||||= +=.+|++.|.++|++|..+.|....
T Consensus 13 lVTGatGf--IG~~l~~~Ll~~g~~V~~~vR~~~~ 45 (338)
T 2rh8_A 13 CVVGGTGF--VASLLVKLLLQKGYAVNTTVRDPDN 45 (338)
T ss_dssp EEECTTSH--HHHHHHHHHHHTTCEEEEEESCTTC
T ss_pred EEECCCCH--HHHHHHHHHHHCCCEEEEEECCCCC
T ss_conf 99779739--9999999999786989999888740
No 392
>1fdr_A Flavodoxin reductase; ferredoxin reductase, flavin, oxidoreductase, flavoprotein; HET: FAD; 1.70A {Escherichia coli} SCOP: b.43.4.2 c.25.1.1 PDB: 3fpk_A*
Probab=33.94 E-value=12 Score=16.72 Aligned_cols=15 Identities=0% Similarity=-0.031 Sum_probs=6.7
Q ss_pred CHHHHHHHHHHHHHH
Q ss_conf 878999999999999
Q gi|254780401|r 314 NPDDLTNLVEMTVVS 328 (338)
Q Consensus 314 ~~~~l~~~l~~~i~~ 328 (338)
.+..+.+.+.+.+.+
T Consensus 213 Gp~~m~~~~~~~L~~ 227 (248)
T 1fdr_A 213 GNPQMVRDTQQLLKE 227 (248)
T ss_dssp ECHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHH
T ss_conf 999999999999998
No 393
>2h1i_A Carboxylesterase; structural genomics, PSI-2, protein struct initiative, midwest center for structural genomics, MCSG, H; HET: MSE; 2.80A {Bacillus cereus atcc 14579} SCOP: c.69.1.14
Probab=33.83 E-value=21 Score=14.86 Aligned_cols=55 Identities=16% Similarity=0.143 Sum_probs=41.1
Q ss_pred CCCCCCEEEEEECCCCH-------HHHHHHHHHHCCCCCCCCCCCCCCCCCHHHHHHHHHHHH
Q ss_conf 11168638987415535-------789998874010000122143323489899999999756
Q gi|254780401|r 218 FDLSGKKVLAFSGIADT-------EKFFTTVRQLGALIEQCYSFGDHAHLSDKKIAYLLDQAQ 273 (338)
Q Consensus 218 ~~l~~k~v~afsGIa~P-------~~F~~~L~~~g~~i~~~~~fpDHh~ys~~dl~~i~~~a~ 273 (338)
.++.+.+++.+.|-.|| +++.+.|++.|.++. ...|+.=|.++..++..+.+..+
T Consensus 162 ~~~~~~~vli~hG~~D~~vp~~~~~~~~~~l~~~g~~~~-~~~~~~GH~i~~~~~~~~~~wl~ 223 (226)
T 2h1i_A 162 ANLAGKSVFIAAGTNDPICSSAESEELKVLLENANANVT-MHWENRGHQLTMGEVEKAKEWYD 223 (226)
T ss_dssp CCCTTCEEEEEEESSCSSSCHHHHHHHHHHHHTTTCEEE-EEEESSTTSCCHHHHHHHHHHHH
T ss_pred CCCCCCEEEEEECCCCCCCCHHHHHHHHHHHHHCCCCEE-EEEECCCCCCCHHHHHHHHHHHH
T ss_conf 003563699880389982589999999999997899879-99989998279999999999998
No 394
>2vp4_A Deoxynucleoside kinase; ATP-binding, DNA synthesis, phosphoprotein, feedback inhibition, deoxyribonucleoside kinase, salvage pathway; HET: DCP; 2.20A {Drosophila melanogaster} SCOP: c.37.1.1 PDB: 1j90_A* 2jj8_A* 2vp2_A* 1oe0_A* 2vp5_A* 2vp6_A* 2vp9_A* 2vpp_A* 2vqs_A* 2vp0_A* 1ot3_A* 2jcs_A* 1zm7_A* 1zmx_A*
Probab=33.78 E-value=5.7 Score=18.91 Aligned_cols=23 Identities=26% Similarity=0.274 Sum_probs=14.8
Q ss_pred EEE-ECCEEECCCCCCHHHHHHHHHHH
Q ss_conf 899-82300078887489999999985
Q gi|254780401|r 46 VIC-VGGFVMGGTGKTPTALAIAKAVI 71 (338)
Q Consensus 46 VI~-VGNitvGGtGKTP~v~~l~~~l~ 71 (338)
+|+ -|+. |+|||-++..|++.+.
T Consensus 22 ~I~IeG~~---GsGKST~~~~L~~~l~ 45 (230)
T 2vp4_A 22 TVLIEGNI---GSGKTTYLNHFEKYKN 45 (230)
T ss_dssp EEEEECST---TSCHHHHHHTTGGGTT
T ss_pred EEEEECCC---CCCHHHHHHHHHHHCC
T ss_conf 99988999---8768999999998658
No 395
>3i42_A Response regulator receiver domain protein (CHEY- like); structural genomics, PSI-2, protein structure initiative; 2.15A {Methylobacillus flagellatus KT}
Probab=33.62 E-value=21 Score=14.84 Aligned_cols=27 Identities=11% Similarity=0.116 Sum_probs=13.8
Q ss_pred CCCCCCCHHHHHHHHCCCCCCEEEECC
Q ss_conf 634652012256641024574799718
Q gi|254780401|r 116 VTIVTSDRKIGVQMLLQEGVDIIIMDD 142 (338)
Q Consensus 116 pv~V~~~R~~~~~~~~~~~~diiIlDD 142 (338)
.|.++.+-.+|.+.+.+..+|+||+|=
T Consensus 29 ~v~~a~~g~eAl~~l~~~~~dlillD~ 55 (127)
T 3i42_A 29 QADYVMSGTDALHAMSTRGYDAVFIDL 55 (127)
T ss_dssp EEEEESSHHHHHHHHHHSCCSEEEEES
T ss_pred EEEEECCHHHHHHHHHCCCCCEEEECC
T ss_conf 999989999999999808999998627
No 396
>2gza_A Type IV secretion system protein VIRB11; ATPase, hydrolase; 2.60A {Brucella suis 1330}
Probab=33.62 E-value=15 Score=15.93 Aligned_cols=10 Identities=20% Similarity=0.305 Sum_probs=4.6
Q ss_pred CEEEECCCCC
Q ss_conf 4799718322
Q gi|254780401|r 136 DIIIMDDGFH 145 (338)
Q Consensus 136 diiIlDDGfQ 145 (338)
-+++..|-..
T Consensus 204 riv~iEd~~E 213 (361)
T 2gza_A 204 RLITIEDVPE 213 (361)
T ss_dssp CEEEEESSSC
T ss_pred CCEEEECCHH
T ss_conf 4026617777
No 397
>1zuh_A Shikimate kinase; alpha-beta protein, transferase; 1.80A {Helicobacter pylori 26695} PDB: 1zui_A* 3hr7_A
Probab=33.60 E-value=14 Score=16.05 Aligned_cols=22 Identities=27% Similarity=0.545 Sum_probs=17.1
Q ss_pred EEEECCEEECCCCCCHHHHHHHHHH
Q ss_conf 8998230007888748999999998
Q gi|254780401|r 46 VICVGGFVMGGTGKTPTALAIAKAV 70 (338)
Q Consensus 46 VI~VGNitvGGtGKTP~v~~l~~~l 70 (338)
+|-+| +-|+|||-+...|++.|
T Consensus 10 IiliG---~~GsGKSTvak~La~~l 31 (168)
T 1zuh_A 10 LVLIG---FMGSGKSSLAQELGLAL 31 (168)
T ss_dssp EEEES---CTTSSHHHHHHHHHHHH
T ss_pred EEEEC---CCCCCHHHHHHHHHHHH
T ss_conf 99989---99998999999999996
No 398
>1ur4_A Galactanase; hydrolase, beta-1, glycoside hydrolase, substrate specificity, pectin, GH-A, family 53, plant cell WALL degradation; HET: B2G PGE; 2.2A {Bacillus licheniformis} SCOP: c.1.8.3 PDB: 1r8l_A* 1ur0_A* 2ccr_A* 2j74_A* 2gft_A*
Probab=33.60 E-value=21 Score=14.84 Aligned_cols=54 Identities=9% Similarity=-0.040 Sum_probs=31.2
Q ss_pred CCHHHHHHHHHHHC--CCCCCCCCCCCCCCCCHHHHH-HHHHHHHHCCCEEEECHHHH
Q ss_conf 53578999887401--000012214332348989999-99997564798799854663
Q gi|254780401|r 232 ADTEKFFTTVRQLG--ALIEQCYSFGDHAHLSDKKIA-YLLDQAQQKGLILVTTAKDA 286 (338)
Q Consensus 232 a~P~~F~~~L~~~g--~~i~~~~~fpDHh~ys~~dl~-~i~~~a~~~~~~iiTTEKD~ 286 (338)
+....|++.+...+ +.++....||--|. +..++. .+.+.+...+.+++++|=-+
T Consensus 210 ~~~~~~~~~l~~~~~~~Dvig~s~Yp~w~~-~~~~l~~~l~~l~~~y~k~v~v~Et~~ 266 (399)
T 1ur4_A 210 GRYAWIAETLHRHHVDYDVFASSYYPFWHG-TLKNLTSVLTSVADTYGKKVMVAETSY 266 (399)
T ss_dssp THHHHHHHHHHHTTCCCSEEEEEECTTTSC-CHHHHHHHHHHHHHHHCCEEEEEEECC
T ss_pred HHHHHHHHHHHHCCCCCEEEEEEECCCCCC-CHHHHHHHHHHHHHHHCCCEEEEEEEC
T ss_conf 778999999876589804887550478787-399999999999998699759998603
No 399
>2zxr_A Single-stranded DNA specific exonuclease RECJ; DNA repair, hydrolase; 2.15A {Thermus thermophilus} PDB: 2zxo_A 2zxp_A 1ir6_A
Probab=33.45 E-value=21 Score=14.82 Aligned_cols=81 Identities=20% Similarity=0.259 Sum_probs=46.0
Q ss_pred CCCEEEECCEEECCCCCCHHHHHHHHHHHHCCCCEEE-----EEECCCCCCCCCEEEECCCCCHHHHCCHHHHHHHCCCC
Q ss_conf 8988998230007888748999999998524731598-----76045787777558714567887704212332205763
Q gi|254780401|r 43 PIPVICVGGFVMGGTGKTPTALAIAKAVIDKNLKPGF-----LSRGYGRKSRISFRVDLEKHSAYDVGDEPLLLARRAVT 117 (338)
Q Consensus 43 ~~pVI~VGNitvGGtGKTP~v~~l~~~l~~~g~~~~i-----lsRGYg~~~~~~~~v~~~~~~~~~vGDEp~lla~~~pv 117 (338)
.-+|...|-.=+-|. | -+.-|.+.|+..|.++.. .+-|||=.... + ++. +..+..
T Consensus 72 ~ekI~I~GDYDvDGi--T-StaIL~~~L~~lg~~v~~yIP~R~~eGYGl~~~~---i-----------~~~---~eg~~L 131 (666)
T 2zxr_A 72 GKRIRVHGDYDADGL--T-GTAILVRGLAALGADVHPFIPHRLEEGYGVLMER---V-----------PEH---LEASDL 131 (666)
T ss_dssp TCEEEEECCSSHHHH--H-HHHHHHHHHHHTTCEEEECCC-------------------------------------CCE
T ss_pred CCEEEEEEECCCCHH--H-HHHHHHHHHHHCCCCEEEECCCCCCCCCCCCHHH---H-----------HHH---HHCCCE
T ss_conf 998999974684168--9-9999999999889965998889765688869999---9-----------998---608998
Q ss_pred C--C--CCCHHHHHHHHCCCCCCEEEECCC
Q ss_conf 4--6--520122566410245747997183
Q gi|254780401|r 118 I--V--TSDRKIGVQMLLQEGVDIIIMDDG 143 (338)
Q Consensus 118 ~--V--~~~R~~~~~~~~~~~~diiIlDDG 143 (338)
+ | |-.-.+.+.++.+.|.|+||.|-=
T Consensus 132 iITvDcGi~a~e~i~~a~~~GidvIVtDHH 161 (666)
T 2zxr_A 132 FLTVDCGITNHAELRELLENGVEVIVTDHH 161 (666)
T ss_dssp EEESCCC--------------CEEEEECCC
T ss_pred EEEECCCCCCHHHHHHHHHCCCEEEEECCC
T ss_conf 999648823399999888679989994989
No 400
>3hws_A ATP-dependent CLP protease ATP-binding subunit CLPX; CLPXP, AAA+ molecular machine, hexamer, asymmetric,, chaperone, metal-binding; HET: ADP; 3.25A {Escherichia coli k-12} PDB: 3hte_A
Probab=33.42 E-value=13 Score=16.46 Aligned_cols=23 Identities=30% Similarity=0.481 Sum_probs=17.6
Q ss_pred EEEECCEEECCCCCCHHHHHHHHHHH
Q ss_conf 89982300078887489999999985
Q gi|254780401|r 46 VICVGGFVMGGTGKTPTALAIAKAVI 71 (338)
Q Consensus 46 VI~VGNitvGGtGKTP~v~~l~~~l~ 71 (338)
++-+|. =|+|||=++..||+.|.
T Consensus 54 ~Lf~GP---TGvGKTelAk~LA~~l~ 76 (363)
T 3hws_A 54 ILLIGP---TGSGKTLLAETLARLLD 76 (363)
T ss_dssp EEEECC---TTSSHHHHHHHHHHHTT
T ss_pred EEEECC---CCCCHHHHHHHHHHHHH
T ss_conf 899899---98889999999999860
No 401
>1p5z_B DCK, deoxycytidine kinase; nucleoside kinase, P-loop, ARAC, cytarabine, transferase; HET: AR3 ADP; 1.60A {Homo sapiens} SCOP: c.37.1.1 PDB: 1p60_A* 1p61_B* 1p62_B* 2a7q_A* 2qrn_A* 2qro_A* 3exk_A* 3hp1_A* 2no7_A* 2no1_A* 2no6_A* 2no0_A* 2no9_A* 2noa_A* 2zi5_A* 2zi4_A* 2zi6_A* 2zi7_B* 2zia_A* 2zi3_A* ...
Probab=33.31 E-value=4.5 Score=19.64 Aligned_cols=29 Identities=17% Similarity=0.263 Sum_probs=21.0
Q ss_pred EEEECCEEECCCCCCHHHHHHHHHHHHCCCCE
Q ss_conf 89982300078887489999999985247315
Q gi|254780401|r 46 VICVGGFVMGGTGKTPTALAIAKAVIDKNLKP 77 (338)
Q Consensus 46 VI~VGNitvGGtGKTP~v~~l~~~l~~~g~~~ 77 (338)
|..-||+ |+|||-++..|++.|...++.+
T Consensus 27 I~IeG~~---GsGKST~~~~L~~~l~~~~~~~ 55 (263)
T 1p5z_B 27 ISIEGNI---AAGKSTFVNILKQLCEDWEVVP 55 (263)
T ss_dssp EEEECST---TSSHHHHHTTTGGGCTTEEEEC
T ss_pred EEEECCC---CCCHHHHHHHHHHHHHCCCCEE
T ss_conf 9998998---8859999999999973489857
No 402
>3nhm_A Response regulator; protein structure initiative II(PSI II), NYSGXRC, structural genomics; 2.19A {Myxococcus xanthus}
Probab=33.07 E-value=17 Score=15.58 Aligned_cols=27 Identities=26% Similarity=0.304 Sum_probs=13.0
Q ss_pred CCCCCCCCHHHHHHHHCCCCCCEEEEC
Q ss_conf 763465201225664102457479971
Q gi|254780401|r 115 AVTIVTSDRKIGVQMLLQEGVDIIIMD 141 (338)
Q Consensus 115 ~pv~V~~~R~~~~~~~~~~~~diiIlD 141 (338)
+-|..+.|=.+|.+.+.+..+|+||+|
T Consensus 28 ~~v~~a~~g~eal~~l~~~~pdliilD 54 (133)
T 3nhm_A 28 FDCTTAADGASGLQQALAHPPDVLISD 54 (133)
T ss_dssp SEEEEESSHHHHHHHHHHSCCSEEEEC
T ss_pred CEEEEECCHHHHHHHHHHCCCCEEEEC
T ss_conf 989998999999999984799999975
No 403
>1zxx_A 6-phosphofructokinase; allosteric regulation, lactobacillus bulgaricus, transferase; 1.85A {Lactobacillus delbrueckii subsp}
Probab=32.94 E-value=21 Score=14.83 Aligned_cols=110 Identities=19% Similarity=0.274 Sum_probs=55.8
Q ss_pred ECCEEECCC--CCCHHHHHHHHHHHHCCCCEEEEEECCCCCCCCCEEEECCCC--CHHHHCCHHHHHHHCCCC-CCCCCH
Q ss_conf 823000788--874899999999852473159876045787777558714567--887704212332205763-465201
Q gi|254780401|r 49 VGGFVMGGT--GKTPTALAIAKAVIDKNLKPGFLSRGYGRKSRISFRVDLEKH--SAYDVGDEPLLLARRAVT-IVTSDR 123 (338)
Q Consensus 49 VGNitvGGt--GKTP~v~~l~~~l~~~g~~~~ilsRGYg~~~~~~~~v~~~~~--~~~~vGDEp~lla~~~pv-~V~~~R 123 (338)
||=+|.||. |=-..+..+++.....|+++--+-.||.|-..+.+..-+..+ ....-|--. |-..+.+. .-..++
T Consensus 4 I~IltsGG~~pG~Na~i~~~v~~a~~~~~~v~g~~~G~~GL~~~~~~~l~~~~v~~~~~~gGt~-LgtsR~~~~~~~~~~ 82 (319)
T 1zxx_A 4 IGILTSGGDAPGMNAAVRAVTRVAIANGLEVFGIRYGFAGLVAGDIFPLESEDVAHLINVSGTF-LYSARYPEFAEEEGQ 82 (319)
T ss_dssp EEEEECSSCCTTHHHHHHHHHHHHHTTTCEEEEECTHHHHHHHTCEEECCGGGGTTCTTCCSCT-TCCCCCGGGTSHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHHHHHHHCCCEEEEECCHHHHHCCCCEEECCHHHHHHHHHCCCCE-ECCCCCCCCCCHHHH
T ss_conf 9998847874669999999999999789989998501788568990779999998887079852-146888766436778
Q ss_pred HHHHHHHCCCCCCEEEE---CCCCCCCC-C-CCEEEEEEEC
Q ss_conf 22566410245747997---18322344-1-2306999961
Q gi|254780401|r 124 KIGVQMLLQEGVDIIIM---DDGFHSAD-L-QADFSLIVVN 159 (338)
Q Consensus 124 ~~~~~~~~~~~~diiIl---DDGfQh~~-l-~rdl~Ivl~d 159 (338)
.++++.+.+.+.|.++. ||.++--. + ..++.++.+.
T Consensus 83 ~~~~~~l~~~~Id~Li~iGGdgS~~~a~~l~~~~i~vigIP 123 (319)
T 1zxx_A 83 LAGIEQLKKHGIDAVVVIGGDGSYHGALQLTRHGFNSIGLP 123 (319)
T ss_dssp HHHHHHHHHTTCCEEEEEECHHHHHHHHHHHHTTCCEEEEE
T ss_pred HHHHHHHHHCCCCEEEEECCCCHHHHHHHHHHCCCCEEEEE
T ss_conf 99999999769989999379617999999775368567762
No 404
>1ek6_A UDP-galactose 4-epimerase; short-chain dehydrogenase, galactosemia, isomerase; HET: NAI UPG; 1.50A {Homo sapiens} SCOP: c.2.1.2 PDB: 1ek5_A* 1hzj_A* 1i3k_A* 1i3l_A* 1i3m_A* 1i3n_A*
Probab=32.84 E-value=22 Score=14.75 Aligned_cols=32 Identities=16% Similarity=0.249 Sum_probs=25.8
Q ss_pred EEECCCCCCHHHHHHHHHHHHCCCCEEEEEECCC
Q ss_conf 0007888748999999998524731598760457
Q gi|254780401|r 52 FVMGGTGKTPTALAIAKAVIDKNLKPGFLSRGYG 85 (338)
Q Consensus 52 itvGGtGKTP~v~~l~~~l~~~g~~~~ilsRGYg 85 (338)
|.+||||- +=.+|++.|.++|++|.++.|-+.
T Consensus 6 LITG~sGf--iGs~l~~~Ll~~g~~V~~~d~~~~ 37 (348)
T 1ek6_A 6 LVTGGAGY--IGSHTVLELLEAGYLPVVIDNFHN 37 (348)
T ss_dssp EEETTTSH--HHHHHHHHHHHTTCCEEEEECSSS
T ss_pred EEECCCCH--HHHHHHHHHHHCCCEEEEEECCCC
T ss_conf 99789728--999999999978598999977874
No 405
>2pt5_A Shikimate kinase, SK; aromatic amino acid biosynthesis, P-loop kinase, shikimate pathway, nucleotide-binding, amino-acid biosynthesis; 2.10A {Aquifex aeolicus VF5}
Probab=32.82 E-value=15 Score=15.94 Aligned_cols=18 Identities=11% Similarity=0.241 Sum_probs=15.2
Q ss_pred ECCCCCCHHHHHHHHHHH
Q ss_conf 078887489999999985
Q gi|254780401|r 54 MGGTGKTPTALAIAKAVI 71 (338)
Q Consensus 54 vGGtGKTP~v~~l~~~l~ 71 (338)
+-|+|||-+...||+.|.
T Consensus 8 ~~GsGKSTvg~~La~~Lg 25 (168)
T 2pt5_A 8 FMCSGKSTVGSLLSRSLN 25 (168)
T ss_dssp CTTSCHHHHHHHHHHHHT
T ss_pred CCCCCHHHHHHHHHHHHC
T ss_conf 999988999999999959
No 406
>1w2w_B 5-methylthioribose-1-phosphate isomerase; EIF2B, methionine salvage pathway, translation initiation, oxidoreductase; 1.75A {Saccharomyces cerevisiae} SCOP: c.124.1.5
Probab=32.82 E-value=18 Score=15.31 Aligned_cols=62 Identities=16% Similarity=0.247 Sum_probs=42.3
Q ss_pred CCCCCCCH--HHHHHH----HCCCCCCEEEECCCCCCCCCCC---EEEEEEECCCCCCCCCCCC-CCHHHHH
Q ss_conf 63465201--225664----1024574799718322344123---0699996184335665537-6136521
Q gi|254780401|r 116 VTIVTSDR--KIGVQM----LLQEGVDIIIMDDGFHSADLQA---DFSLIVVNSHRGLGNGLVF-PAGPLRV 177 (338)
Q Consensus 116 pv~V~~~R--~~~~~~----~~~~~~diiIlDDGfQh~~l~r---dl~Ivl~d~~~~~gn~~ll-PaGpLRE 177 (338)
-|+|.+.| .+|++. |.+.+.++-+.-|+-=.+-+.| |++.|++-+..-+.||-++ ..|.+=-
T Consensus 6 ~V~v~EsRP~~eG~~ltA~~L~~~GI~vtli~Dsav~~~m~~~~~~Vd~VlvGAd~v~~nG~v~nk~GT~~i 77 (191)
T 1w2w_B 6 HVFPLETRPYNQGSRLTAYELVYDKIPSTLITDSSIAYRIRTSPIPIKAAFVGADRIVRNGDTANKIGTLQL 77 (191)
T ss_dssp EEEEBCCTTTTHHHHTHHHHHHHHTCCBEEBCGGGHHHHHHHCSSCEEEEEECCSEECTTSCEEEETTHHHH
T ss_pred EEEEECCCCHHHHHHHHHHHHHHCCCCEEEEEHHHHHHHHHHCCCCCCEEEECCCEEECCCCEEEHHHHHHH
T ss_conf 899906983137799999999986998799953389999985687788899881087548988755648999
No 407
>2gi4_A Possible phosphotyrosine protein phosphatase; low molecular weight, protein tyrosine phosphatase, bacterial phosphatase; NMR {Campylobacter jejuni}
Probab=32.74 E-value=11 Score=16.85 Aligned_cols=36 Identities=33% Similarity=0.456 Sum_probs=26.0
Q ss_pred CCEEEECCEEECCCCCCHHHHHHHHHHHH-CCC--CEEEEEECC
Q ss_conf 98899823000788874899999999852-473--159876045
Q gi|254780401|r 44 IPVICVGGFVMGGTGKTPTALAIAKAVID-KNL--KPGFLSRGY 84 (338)
Q Consensus 44 ~pVI~VGNitvGGtGKTP~v~~l~~~l~~-~g~--~~~ilsRGY 84 (338)
|-.||.||+ .-.|++..+.+.+.+ +|+ ...+-|.|=
T Consensus 4 VLFVCtgN~-----cRSpmAEal~r~~~~~~~~~~~~~v~SAG~ 42 (156)
T 2gi4_A 4 ILFICLGNI-----CRSPMAEFIMKDLVKKANLEKEFFINSAGT 42 (156)
T ss_dssp EEEECSSCS-----SHHHHHHHHHHHHHHHHTTTTTCEEEEEBS
T ss_pred EEEEECCCH-----HHHHHHHHHHHHHHHHCCCCCCEEEECCCC
T ss_conf 999979808-----999999999999998679986548861333
No 408
>2vsf_A XPD, DNA repair helicase RAD3 related protein; NER, TFIIH, hydrolase, ATP-binding, nucleotide-binding, iron sulfur cluster; HET: DNA; 2.9A {Thermoplasma acidophilum}
Probab=32.67 E-value=10 Score=17.06 Aligned_cols=27 Identities=33% Similarity=0.432 Sum_probs=15.8
Q ss_pred CCCCCCHHHHHHHH---HHHHCCCCEEEEEEC
Q ss_conf 78887489999999---985247315987604
Q gi|254780401|r 55 GGTGKTPTALAIAK---AVIDKNLKPGFLSRG 83 (338)
Q Consensus 55 GGtGKTP~v~~l~~---~l~~~g~~~~ilsRG 83 (338)
=|||||-. ||+- +..+.+.++.|.+|-
T Consensus 13 TGtGKTla--yL~~al~~~~~~~~kivi~T~T 42 (602)
T 2vsf_A 13 TGSGKTIM--ALKSALQYSSERKLKVLYLVRT 42 (602)
T ss_dssp SSSSTTHH--HHHTTCSSTTTTSCEEEEEESS
T ss_pred CHHHHHHH--HHHHHHHHHHHCCCEEEEECCC
T ss_conf 73899999--9999999998769909998668
No 409
>1wp9_A ATP-dependent RNA helicase, putative; ATPase, DNA replication, DNA repair, DNA recombination, hydrolase; 2.90A {Pyrococcus furiosus dsm 3638} SCOP: c.37.1.19 c.37.1.19
Probab=32.64 E-value=22 Score=14.73 Aligned_cols=63 Identities=19% Similarity=0.313 Sum_probs=33.0
Q ss_pred CCCEEEEEECC-CCHHHHHHHHHHHCCCCCCC---CCCCCCCCCCHHHHHHHHHHHHHCCC-EEEECH
Q ss_conf 68638987415-53578999887401000012---21433234898999999997564798-799854
Q gi|254780401|r 221 SGKKVLAFSGI-ADTEKFFTTVRQLGALIEQC---YSFGDHAHLSDKKIAYLLDQAQQKGL-ILVTTA 283 (338)
Q Consensus 221 ~~k~v~afsGI-a~P~~F~~~L~~~g~~i~~~---~~fpDHh~ys~~dl~~i~~~a~~~~~-~iiTTE 283 (338)
.+.+++.||.- ..-+...+.|+..|+..... .....|..-+.++-..+.+..++... .+|+|.
T Consensus 360 ~~~~~~if~~~~~~~~~l~~~L~~~~~~~~~~~g~~~~~~~~~~~~~~r~~~l~~F~~~~~~VLi~T~ 427 (494)
T 1wp9_A 360 QNSKIIVFTNYRETAKKIVNELVKDGIKAKRFVGQASKENDRGLSQREQKLILDEFARGEFNVLVATS 427 (494)
T ss_dssp TTCCEEEECSCHHHHHHHHHHHHHTTCCEEEECCSSCC-------CCHHHHHHHHHHHTSCSEEEECG
T ss_pred CCCCCCCCCCHHHHHHHHHHHHHHCCCCEEEEECCCCCCCCCCCCHHHHHHHHHHHHCCCCCEEEECC
T ss_conf 66544321133999999999998569853786235544467788999999999999779998998855
No 410
>1n4w_A CHOD, cholesterol oxidase; flavoenzyme, steroid metabolism, oxidoreductase, atomic resolution; HET: FAD; 0.92A {Streptomyces SP} SCOP: c.3.1.2 d.16.1.1 PDB: 1b4v_A* 1n1p_A* 1n4u_A* 1n4v_A* 1mxt_A* 2gew_A* 1b8s_A* 3gyi_A* 1cc2_A* 3gyj_A* 1ijh_A* 1cbo_A* 3b3r_A* 3b6d_A* 3cnj_A*
Probab=32.58 E-value=13 Score=16.44 Aligned_cols=33 Identities=18% Similarity=0.207 Sum_probs=24.6
Q ss_pred CCEEEECCEEECCCCCCHHHHHHHHHHHHCCCCEEEEEECC
Q ss_conf 98899823000788874899999999852473159876045
Q gi|254780401|r 44 IPVICVGGFVMGGTGKTPTALAIAKAVIDKNLKPGFLSRGY 84 (338)
Q Consensus 44 ~pVI~VGNitvGGtGKTP~v~~l~~~l~~~g~~~~ilsRGY 84 (338)
+.||.||-= |.=..+|..|.++|++|.+|-+|.
T Consensus 6 ~dvIVVGsG--------~aG~~~A~~La~~g~~VLvlEaG~ 38 (504)
T 1n4w_A 6 VPAVVIGTG--------YGAAVSALRLGEAGVQTLMLEMGQ 38 (504)
T ss_dssp EEEEEECCS--------HHHHHHHHHHHHTTCCEEEEESSC
T ss_pred CCEEEECCC--------HHHHHHHHHHHHCCCEEEEEECCC
T ss_conf 959997968--------889999999986869499995789
No 411
>2z9v_A Aspartate aminotransferase; pyridoxamine, pyruvate; HET: PXM; 1.70A {Mesorhizobium loti} PDB: 2z9u_A* 2z9w_A* 2z9x_A*
Probab=32.43 E-value=22 Score=14.71 Aligned_cols=29 Identities=17% Similarity=-0.101 Sum_probs=16.8
Q ss_pred EECCCCCCHHHHHHHHHHHHCCCCEEEEEECC
Q ss_conf 00788874899999999852473159876045
Q gi|254780401|r 53 VMGGTGKTPTALAIAKAVIDKNLKPGFLSRGY 84 (338)
Q Consensus 53 tvGGtGKTP~v~~l~~~l~~~g~~~~ilsRGY 84 (338)
+-|||+ -+-..+.+ |.+.|-++.|++-|+
T Consensus 65 ~gsgt~--a~ea~~~~-ll~~Gd~Vlv~~~g~ 93 (392)
T 2z9v_A 65 HGEPVL--GLEAAAAS-LISPDDVVLNLASGV 93 (392)
T ss_dssp SSCTHH--HHHHHHHH-HCCTTCCEEEEESSH
T ss_pred ECCHHH--HHHHHHHH-HCCCCCEEEEECCCH
T ss_conf 797799--99999997-368998799953761
No 412
>3crv_A XPD/RAD3 related DNA helicase; XPD helicase DNA repair cancer aging, hydrolase; HET: FLC; 2.00A {Sulfolobus acidocaldarius} PDB: 3crw_1*
Probab=32.37 E-value=22 Score=14.71 Aligned_cols=26 Identities=27% Similarity=0.327 Sum_probs=15.6
Q ss_pred CCCCCCHHHHHHHHHHHHCCCCEEEEEEC
Q ss_conf 78887489999999985247315987604
Q gi|254780401|r 55 GGTGKTPTALAIAKAVIDKNLKPGFLSRG 83 (338)
Q Consensus 55 GGtGKTP~v~~l~~~l~~~g~~~~ilsRG 83 (338)
=|||||= .||+-.+. .|.++.|.++-
T Consensus 31 TGtGKTl--ayL~~al~-~~~~vii~T~T 56 (551)
T 3crv_A 31 TGSGKTL--FSLLVSLE-VKPKVLFVVRT 56 (551)
T ss_dssp TTSSHHH--HHHHHHHH-HCSEEEEEESS
T ss_pred CHHHHHH--HHHHHHHH-HCCCEEEECCC
T ss_conf 8379999--99999999-79979999887
No 413
>3n0r_A Response regulator; sigma factor, receiver, two-component SI transduction, signaling protein; HET: MSE GOL; 1.25A {Caulobacter vibrioides}
Probab=32.26 E-value=22 Score=14.69 Aligned_cols=23 Identities=9% Similarity=0.238 Sum_probs=14.7
Q ss_pred CHHHHHHHHHHHHHHHHHHCCCC
Q ss_conf 87899999999999986313477
Q gi|254780401|r 314 NPDDLTNLVEMTVVSFANSNKKP 336 (338)
Q Consensus 314 ~~~~l~~~l~~~i~~~~n~~~~~ 336 (338)
+.+.|.+.|++.+.+-.++..++
T Consensus 263 ~~~~L~~~i~~aL~~~~~~~~~~ 285 (286)
T 3n0r_A 263 QPETVKAAIGQALFFHPRRTAKA 285 (286)
T ss_dssp CHHHHHHHHHHHHHHSCCC----
T ss_pred CHHHHHHHHHHHHHHCHHHHHCC
T ss_conf 99999999999998542032128
No 414
>1e6u_A GDP-fucose synthetase; epimerase/reductase, SDR, RED; HET: NAP; 1.45A {Escherichia coli} SCOP: c.2.1.2 PDB: 1e7q_A* 1bsv_A* 1fxs_A* 1gfs_A 1e7s_A* 1bws_A* 1e7r_A*
Probab=32.23 E-value=22 Score=14.69 Aligned_cols=30 Identities=20% Similarity=0.229 Sum_probs=23.4
Q ss_pred EEECCCCCCHHHHHHHHHHHHCCCCEEEEEEC
Q ss_conf 00078887489999999985247315987604
Q gi|254780401|r 52 FVMGGTGKTPTALAIAKAVIDKNLKPGFLSRG 83 (338)
Q Consensus 52 itvGGtGKTP~v~~l~~~l~~~g~~~~ilsRG 83 (338)
+.+|||| =+=-+|++.|.++|+.+.++.+.
T Consensus 7 lITG~tG--fiG~~l~~~L~~~g~~v~~~~~~ 36 (321)
T 1e6u_A 7 FIAGHRG--MVGSAIRRQLEQRGDVELVLRTR 36 (321)
T ss_dssp EEETTTS--HHHHHHHHHHTTCTTEEEECCCT
T ss_pred EEECCCC--HHHHHHHHHHHHCCCEEEEECCC
T ss_conf 9984874--89999999999784989996571
No 415
>3ced_A Methionine import ATP-binding protein METN 2; ABC transporter, NIL domain, structural genomics, PSI-2, protein structure initiative; 2.15A {Staphylococcus aureus subsp} SCOP: d.58.18.13
Probab=32.20 E-value=22 Score=14.68 Aligned_cols=23 Identities=26% Similarity=0.447 Sum_probs=9.5
Q ss_pred CCCCCCHHHHHHHHHHHHCCCCEEEE
Q ss_conf 78887489999999985247315987
Q gi|254780401|r 55 GGTGKTPTALAIAKAVIDKNLKPGFL 80 (338)
Q Consensus 55 GGtGKTP~v~~l~~~l~~~g~~~~il 80 (338)
|.+-.+|++--|++.+ |..+-||
T Consensus 29 g~~a~~Pvis~l~~~~---~v~vnIL 51 (98)
T 3ced_A 29 GSTTTEPIVSSLSTAY---DIKINIL 51 (98)
T ss_dssp EESCHHHHHHHHHHHH---TCCCEEE
T ss_pred CCCCCCHHHHHHHHHH---CCCEEEE
T ss_conf 8875845999999986---9965999
No 416
>3cpj_B GTP-binding protein YPT31/YPT8; RAB GTPase, prenylation, vesicular transport, acetylation, golgi apparatus, lipoprotein, membrane; HET: GDP; 2.35A {Saccharomyces cerevisiae}
Probab=32.19 E-value=14 Score=16.02 Aligned_cols=25 Identities=16% Similarity=0.343 Sum_probs=17.2
Q ss_pred CCCCCCEEEECCEEECCCCCCHHHHHHH
Q ss_conf 3388988998230007888748999999
Q gi|254780401|r 40 LHAPIPVICVGGFVMGGTGKTPTALAIA 67 (338)
Q Consensus 40 ~~~~~pVI~VGNitvGGtGKTP~v~~l~ 67 (338)
|..-..|+.||+ +|+|||-++..++
T Consensus 10 yd~~~KivviG~---~~vGKTsLi~r~~ 34 (223)
T 3cpj_B 10 YDLLFKIVLIGD---SGVGKSNLLSRFT 34 (223)
T ss_dssp CCEEEEEEEESC---TTSSHHHHHHHHH
T ss_pred CCEEEEEEEECC---CCCCHHHHHHHHH
T ss_conf 663659999999---9969999999997
No 417
>1xvl_A Mn transporter, MNTC protein; manganese, ABC-type transport systems, photosynthesis, cyanobacteria, disulfide bond, metal transport; 2.90A {Synechocystis SP} SCOP: c.92.2.2
Probab=32.16 E-value=22 Score=14.68 Aligned_cols=51 Identities=8% Similarity=0.152 Sum_probs=39.2
Q ss_pred CHHHHHHHHHHHCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCEEEECH
Q ss_conf 357899988740100001221433234898999999997564798799854
Q gi|254780401|r 233 DTEKFFTTVRQLGALIEQCYSFGDHAHLSDKKIAYLLDQAQQKGLILVTTA 283 (338)
Q Consensus 233 ~P~~F~~~L~~~g~~i~~~~~fpDHh~ys~~dl~~i~~~a~~~~~~iiTTE 283 (338)
....|-..++.+|++.........+..-+.+++.++.+..++++...|-+|
T Consensus 210 ~H~af~Y~~~~ygl~~~~~~~~~~~~eps~~~l~~l~~~ik~~~v~~if~e 260 (321)
T 1xvl_A 210 CEGAFSYLARDYGMEEIYMWPINAEQQFTPKQVQTVIEEVKTNNVPTIFCE 260 (321)
T ss_dssp EESTTHHHHHHTTCEEEEEESSSSSCSCCHHHHHHHHHHHHTTTCSEEEEE
T ss_pred ECCHHHHHHHHCCCCEEEECCCCCCCCCCHHHHHHHHHHHHHCCCCEEEEC
T ss_conf 271789999986993675136577566789999999999986498389972
No 418
>1sb8_A WBPP; epimerase, 4-epimerase, UDP-galnac, UDP-GLCNAC, SDR, GALE, NAD, SYK, UDP, N- acetylglucosamine, N-acetylgalactosamine, UDP-GLC; HET: NAD UD2; 2.10A {Pseudomonas aeruginosa} SCOP: c.2.1.2 PDB: 1sb9_A*
Probab=32.13 E-value=22 Score=14.67 Aligned_cols=29 Identities=14% Similarity=0.156 Sum_probs=22.8
Q ss_pred EEECCCCCCHHHHHHHHHHHHCCCCEEEEEE
Q ss_conf 0007888748999999998524731598760
Q gi|254780401|r 52 FVMGGTGKTPTALAIAKAVIDKNLKPGFLSR 82 (338)
Q Consensus 52 itvGGtGKTP~v~~l~~~l~~~g~~~~ilsR 82 (338)
|++|||| =+=-+|++.|.++|++|..+-|
T Consensus 31 LVTG~tG--fIGs~lv~~L~~~g~~V~~vd~ 59 (352)
T 1sb8_A 31 LITGVAG--FIGSNLLETLLKLDQKVVGLDN 59 (352)
T ss_dssp EEETTTS--HHHHHHHHHHHHTTCEEEEEEC
T ss_pred EEECCCC--HHHHHHHHHHHHCCCEEEEEEC
T ss_conf 9967887--8999999999978598999978
No 419
>2g3y_A GTP-binding protein GEM; small GTPase, GDP, inactive state, RGK family, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 2.40A {Homo sapiens} SCOP: c.37.1.8
Probab=32.13 E-value=21 Score=14.85 Aligned_cols=19 Identities=32% Similarity=0.497 Sum_probs=14.3
Q ss_pred CEEEECCEEECCCCCCHHHHHH
Q ss_conf 8899823000788874899999
Q gi|254780401|r 45 PVICVGGFVMGGTGKTPTALAI 66 (338)
Q Consensus 45 pVI~VGNitvGGtGKTP~v~~l 66 (338)
.|+.||+ +|+|||-++..+
T Consensus 39 KIvlvG~---~~vGKSsLi~r~ 57 (211)
T 2g3y_A 39 RVVLIGE---QGVGKSTLANIF 57 (211)
T ss_dssp EEEEECC---TTSSHHHHHHHH
T ss_pred EEEEECC---CCCCHHHHHHHH
T ss_conf 9999996---998889999999
No 420
>3ek2_A Enoyl-(acyl-carrier-protein) reductase (NADH); ssgcid, oxidoreductase, structural genomics; 1.90A {Burkholderia pseudomallei 1710B}
Probab=31.97 E-value=22 Score=14.66 Aligned_cols=32 Identities=25% Similarity=0.268 Sum_probs=26.3
Q ss_pred EEECCCCCCHHHHHHHHHHHHCCCCEEEEEEC
Q ss_conf 00078887489999999985247315987604
Q gi|254780401|r 52 FVMGGTGKTPTALAIAKAVIDKNLKPGFLSRG 83 (338)
Q Consensus 52 itvGGtGKTP~v~~l~~~l~~~g~~~~ilsRG 83 (338)
|.+||+|-.-+=..+|+.|.+.|.++++..|.
T Consensus 18 lITGaa~s~GIG~aiA~~la~~Ga~V~~~~~~ 49 (271)
T 3ek2_A 18 LLTGLLSNRSIAYGIAKACKREGAELAFTYVG 49 (271)
T ss_dssp EECCCCSTTSHHHHHHHHHHHTTCEEEEEESS
T ss_pred EEECCCCCCHHHHHHHHHHHHCCCEEEEEECC
T ss_conf 99899876089999999999869999999588
No 421
>1zp6_A Hypothetical protein ATU3015; alpha-beta protein., structural genomics, PSI, protein structure initiative; 3.20A {Agrobacterium tumefaciens str} SCOP: c.37.1.25
Probab=31.72 E-value=12 Score=16.70 Aligned_cols=24 Identities=25% Similarity=0.303 Sum_probs=16.6
Q ss_pred CCCCCCHHHHHHHHHHHHCCCCEEEEE
Q ss_conf 788874899999999852473159876
Q gi|254780401|r 55 GGTGKTPTALAIAKAVIDKNLKPGFLS 81 (338)
Q Consensus 55 GGtGKTP~v~~l~~~l~~~g~~~~ils 81 (338)
-|+|||-++..|++.| |+....++
T Consensus 18 ~GsGKTT~a~~La~~l---g~~~~~~~ 41 (191)
T 1zp6_A 18 PGSGKSTIAEALANLP---GVPKVHFH 41 (191)
T ss_dssp TTSCHHHHHHHHHTCS---SSCEEEEC
T ss_pred CCCCHHHHHHHHHHHH---CCCEEECC
T ss_conf 9998899999999996---99989836
No 422
>3k1j_A LON protease, ATP-dependent protease LON; ATP-binding, nucleotide-binding, Pro hydrolase; HET: ADP PE8; 2.00A {Thermococcus onnurineus}
Probab=31.58 E-value=14 Score=16.03 Aligned_cols=31 Identities=29% Similarity=0.351 Sum_probs=23.6
Q ss_pred CEEEECCEEECCCCCCHHHHHHHHHHHHCCCCEE
Q ss_conf 8899823000788874899999999852473159
Q gi|254780401|r 45 PVICVGGFVMGGTGKTPTALAIAKAVIDKNLKPG 78 (338)
Q Consensus 45 pVI~VGNitvGGtGKTP~v~~l~~~l~~~g~~~~ 78 (338)
.|+.||-= |||||-++..+++.|-.......
T Consensus 62 ~llL~GpP---GtGKT~lAr~ia~~Lp~~~~~~~ 92 (604)
T 3k1j_A 62 HVLLIGEP---GTGKSMLGQAMAELLPTETLEDI 92 (604)
T ss_dssp CEEEECCT---TSSHHHHHHHHHHTSCCSSCEEE
T ss_pred CEEEECCC---CCHHHHHHHHHHHHCCCCCHHHH
T ss_conf 68998999---81199999999973698145666
No 423
>2ce7_A Cell division protein FTSH; metalloprotease; HET: ADP; 2.44A {Thermotoga maritima} SCOP: a.269.1.1 c.37.1.20 PDB: 2cea_A* 3kds_E*
Probab=31.46 E-value=16 Score=15.65 Aligned_cols=27 Identities=41% Similarity=0.452 Sum_probs=18.8
Q ss_pred CCCCEEEECCEEECCCCCCHHHHHHHHHHH
Q ss_conf 889889982300078887489999999985
Q gi|254780401|r 42 APIPVICVGGFVMGGTGKTPTALAIAKAVI 71 (338)
Q Consensus 42 ~~~pVI~VGNitvGGtGKTP~v~~l~~~l~ 71 (338)
.|-=|+-.|- =|||||=++.++|..+.
T Consensus 48 ~p~g~Ll~Gp---pGtGKT~la~a~a~~~~ 74 (476)
T 2ce7_A 48 MPKGILLVGP---PGTGKTLLARAVAGEAN 74 (476)
T ss_dssp CCSEEEEECC---TTSSHHHHHHHHHHHHT
T ss_pred CCCEEEEECC---CCCCHHHHHHHHHHHHC
T ss_conf 9976998899---99988999999997538
No 424
>1umk_A B5R, NADH-cytochrome B5 reductase; flavoprotein, beta barrel, FAD-binding domain, NADH-binding domain, oxidoreductase; HET: FAD; 1.75A {Homo sapiens} SCOP: b.43.4.2 c.25.1.1 PDB: 1ndh_A* 1i7p_A* 1ib0_A* 1qx4_A*
Probab=31.29 E-value=20 Score=14.99 Aligned_cols=49 Identities=12% Similarity=0.137 Sum_probs=22.4
Q ss_pred CCCEEEEEE-CCCCHHHHHHHHHHH---C-----CCCCCCCCCCCCCCCCHHHHHHHHHH
Q ss_conf 686389874-155357899988740---1-----00001221433234898999999997
Q gi|254780401|r 221 SGKKVLAFS-GIADTEKFFTTVRQL---G-----ALIEQCYSFGDHAHLSDKKIAYLLDQ 271 (338)
Q Consensus 221 ~~k~v~afs-GIa~P~~F~~~L~~~---g-----~~i~~~~~fpDHh~ys~~dl~~i~~~ 271 (338)
..++++.+| |+| =..|..+|+.+ + +.+.-...-+++..| .++++++.+.
T Consensus 145 ~~~~iv~IagG~G-ItP~~s~l~~ll~~~~~~~~v~l~~~~r~~~d~~~-~~~l~~l~~~ 202 (275)
T 1umk_A 145 TVKSVGMIAGGTG-ITPMLQVIRAIMKDPDDHTVCHLLFANQTEKDILL-RPELEELRNK 202 (275)
T ss_dssp ECSEEEEEEEGGG-HHHHHHHHHHHHTCTTCCCEEEEEEEESSGGGCTT-HHHHHHHHHH
T ss_pred CCCEEEEEECCEE-HHHHHHHHHHHHHCCCCCCEEEEEECCCCHHHHHH-HHHHHHHHHH
T ss_conf 7874999975801-55899999999977888745899850489899778-9999999986
No 425
>1pfk_A Phosphofructokinase; transferase(phosphotransferase); HET: FBP ADP; 2.40A {Escherichia coli} SCOP: c.89.1.1 PDB: 2pfk_A
Probab=31.25 E-value=23 Score=14.57 Aligned_cols=104 Identities=19% Similarity=0.287 Sum_probs=56.2
Q ss_pred ECCEEECCC--CCCHHHHHHHHHHHHCCCCEEEEEECCCCCCCCCEEEECCCCCHHHHCCHHHHHHHCCCCCCCCCH---
Q ss_conf 823000788--874899999999852473159876045787777558714567887704212332205763465201---
Q gi|254780401|r 49 VGGFVMGGT--GKTPTALAIAKAVIDKNLKPGFLSRGYGRKSRISFRVDLEKHSAYDVGDEPLLLARRAVTIVTSDR--- 123 (338)
Q Consensus 49 VGNitvGGt--GKTP~v~~l~~~l~~~g~~~~ilsRGYg~~~~~~~~v~~~~~~~~~vGDEp~lla~~~pv~V~~~R--- 123 (338)
||=+|.||- |=-..+..+++...+.|++|--+-.||.|-..+.+..-+. .++- .+.+..-.+.+..|
T Consensus 5 IgIltsGG~~pG~Na~i~~~v~~a~~~g~~v~g~~~G~~GL~~~~~~~l~~----~~v~----~~~~~gGs~lgtsR~~~ 76 (320)
T 1pfk_A 5 IGVLTSGGDAPGMNAAIRGVVRSALTEGLEVMGIYDGYLGLYEDRMVQLDR----YSVS----DMINRGGTFLGSARFPE 76 (320)
T ss_dssp EEEEECSSCCTTHHHHHHHHHHHHHHTTCEEEEESTHHHHHHTTCEEEECS----GGGT----TCTTCCSCTTCCCCCGG
T ss_pred EEEECCCCCCHHHHHHHHHHHHHHHHCCCEEEEECCCHHHHCCCCEEECCH----HHHH----HHHHCCCCEECCCCCCC
T ss_conf 999865888677899999999999877999999916678872798686899----9997----79857997224778886
Q ss_pred -------HHHHHHHCCCCCCEEEE---CCCCCCCCCC--CEEEEEEECC
Q ss_conf -------22566410245747997---1832234412--3069999618
Q gi|254780401|r 124 -------KIGVQMLLQEGVDIIIM---DDGFHSADLQ--ADFSLIVVNS 160 (338)
Q Consensus 124 -------~~~~~~~~~~~~diiIl---DDGfQh~~l~--rdl~Ivl~d~ 160 (338)
.+++..+.+.+.|.++. ||.++.-..- ..+.++.+..
T Consensus 77 ~~~~~~~~~~~~~l~~~~Id~li~iGGdgs~~~a~~l~e~~~~vigIPk 125 (320)
T 1pfk_A 77 FRDENIRAVAIENLKKRGIDALVVIGGDGSYMGAMRLTEMGFPCIGLPG 125 (320)
T ss_dssp GGSHHHHHHHHHHHHHTTCCEEEEEECHHHHHHHHHHHHTTCCEEEEEB
T ss_pred CCCHHHHHHHHHHHHHCCCCEEEEECCCHHHHHHHHHHHCCCCEEEEEE
T ss_conf 6657788899999997699889993693689999997643674331211
No 426
>1rif_A DAR protein, DNA helicase UVSW; bacteriophage, RECG, SF2, DNA binding protein; HET: DNA; 2.00A {Enterobacteria phage T4} SCOP: c.37.1.23
Probab=31.08 E-value=23 Score=14.55 Aligned_cols=25 Identities=16% Similarity=-0.067 Sum_probs=17.3
Q ss_pred CCCCH--HHHHHHHHHHHCCCCEEEEE
Q ss_conf 88748--99999999852473159876
Q gi|254780401|r 57 TGKTP--TALAIAKAVIDKNLKPGFLS 81 (338)
Q Consensus 57 tGKTP--~v~~l~~~l~~~g~~~~ils 81 (338)
+|++| +...+.+.++++|+++-+..
T Consensus 57 ~~~~~~GL~~~i~~~~~~~~~~~~~~~ 83 (282)
T 1rif_A 57 NRLLPFGLVGQIKKFCDNFGYKAWIDP 83 (282)
T ss_dssp TCEEEGGGGGGHHHHHHHTTCCEEECG
T ss_pred CCCCCCCHHHHHHHHHHHCCCEEEEEE
T ss_conf 771247679999999874373377530
No 427
>2z0m_A 337AA long hypothetical ATP-dependent RNA helicase DEAD; ATP-binding, hydrolase, nucleotide-binding, RNA binding protein, structural genomics; 1.90A {Sulfolobus tokodaii}
Probab=31.05 E-value=23 Score=14.55 Aligned_cols=58 Identities=16% Similarity=0.125 Sum_probs=33.8
Q ss_pred CCCEEEEEECCCCHHHHHHHHHHHCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCC-EEEECHHHH
Q ss_conf 686389874155357899988740100001221433234898999999997564798-799854663
Q gi|254780401|r 221 SGKKVLAFSGIADTEKFFTTVRQLGALIEQCYSFGDHAHLSDKKIAYLLDQAQQKGL-ILVTTAKDA 286 (338)
Q Consensus 221 ~~k~v~afsGIa~P~~F~~~L~~~g~~i~~~~~fpDHh~ys~~dl~~i~~~a~~~~~-~iiTTEKD~ 286 (338)
.++.++.||.- ......+.+.+.+. .+=|...+..+-+.+.+..++... .||+|.==.
T Consensus 219 ~~~~~ii~~~t---~~~~~~~~~~l~~~-----~~lh~~~~~~~R~~~~~~f~~g~~~iLvaT~~~~ 277 (337)
T 2z0m_A 219 KDKGVIVFVRT---RNRVAKLVRLFDNA-----IELRGDLPQSVRNRNIDAFREGEYDMLITTDVAS 277 (337)
T ss_dssp CCSSEEEECSC---HHHHHHHHTTCTTE-----EEECTTSCHHHHHHHHHHHHTTSCSEEEECHHHH
T ss_pred CCCEEEEEEEE---EHHHHHHHHHHCCC-----CCCCCCCCHHHHHHHHHHHHCCCCCEEEEECHHH
T ss_conf 78629999985---13579999865044-----3400899999999999998779865899722554
No 428
>2jk1_A HUPR, hydrogenase transcriptional regulatory protein HUPR1; nucleotide-binding, transcription regulation; 2.10A {Rhodobacter capsulatus} PDB: 2vui_B 2vuh_B
Probab=30.95 E-value=17 Score=15.48 Aligned_cols=36 Identities=8% Similarity=0.194 Sum_probs=15.8
Q ss_pred CCCCEEEECCCCCCCCC--CCEEEEEEECCCCCCCCCC
Q ss_conf 45747997183223441--2306999961843356655
Q gi|254780401|r 133 EGVDIIIMDDGFHSADL--QADFSLIVVNSHRGLGNGL 168 (338)
Q Consensus 133 ~~~diiIlDDGfQh~~l--~rdl~Ivl~d~~~~~gn~~ 168 (338)
.+.++....||-+-..+ ...+++|++|..-|-.||.
T Consensus 23 ~g~~v~~a~~~~~al~~~~~~~~dlvl~D~~mP~~~G~ 60 (139)
T 2jk1_A 23 DDFDVLTAQGAEAAIAILEEEWVQVIICDQRMPGRTGV 60 (139)
T ss_dssp TTSCEEEESSHHHHHHHHHHSCEEEEEEESCCSSSCHH
T ss_pred CCCEEEEECCHHHHHHHHHHCCCCEEEEECCCCCCCHH
T ss_conf 79999998999999999972899999985567898559
No 429
>2f6r_A COA synthase, bifunctional coenzyme A synthase; 18044849, bifunctional coenzyme A synthase (COA synthase), structural genomics; HET: ACO UNL; 1.70A {Mus musculus}
Probab=30.82 E-value=16 Score=15.69 Aligned_cols=18 Identities=22% Similarity=0.324 Sum_probs=12.1
Q ss_pred CCCCCHHHHHHHHHHHHCCCCE
Q ss_conf 8887489999999985247315
Q gi|254780401|r 56 GTGKTPTALAIAKAVIDKNLKP 77 (338)
Q Consensus 56 GtGKTP~v~~l~~~l~~~g~~~ 77 (338)
|+|||-++ ++|++.|+.+
T Consensus 85 gSGKStva----~~L~~~G~~v 102 (281)
T 2f6r_A 85 GSGKSSVA----QRLKNLGAYI 102 (281)
T ss_dssp TSCHHHHH----HHHHHHTCEE
T ss_pred CCCHHHHH----HHHHHCCCCE
T ss_conf 52199999----9999879969
No 430
>1mkz_A Molybdenum cofactor biosynthesis protein B; MAD, WEAK anomalous signal, molybdopterin synthesis, structural genomics, PSI; HET: MSE; 1.60A {Escherichia coli} SCOP: c.57.1.1 PDB: 1r2k_B
Probab=30.74 E-value=12 Score=16.56 Aligned_cols=21 Identities=19% Similarity=0.131 Sum_probs=15.2
Q ss_pred EEEEEECCCCHHHHHHHHHHH
Q ss_conf 389874155357899988740
Q gi|254780401|r 224 KVLAFSGIADTEKFFTTVRQL 244 (338)
Q Consensus 224 ~v~afsGIa~P~~F~~~L~~~ 244 (338)
..++|+==|||..-...++.+
T Consensus 130 ~tli~~LPGnP~aa~~~~~~l 150 (172)
T 1mkz_A 130 KTLILAMPGSTKACRTAWENI 150 (172)
T ss_dssp TEEEEEECSSHHHHHHHHHHT
T ss_pred CCEEEECCCCHHHHHHHHHHH
T ss_conf 856998899879999999999
No 431
>2zj8_A DNA helicase, putative SKI2-type helicase; RECA fold, ATP-binding, hydrolase, nucleotide- binding; 2.00A {Pyrococcus furiosus} PDB: 2zj5_A* 2zj2_A 2zja_A*
Probab=30.63 E-value=22 Score=14.72 Aligned_cols=27 Identities=22% Similarity=0.384 Sum_probs=18.9
Q ss_pred CCCCCCHHH-HHHHHHHHHCCCCEEEEE
Q ss_conf 788874899-999999852473159876
Q gi|254780401|r 55 GGTGKTPTA-LAIAKAVIDKNLKPGFLS 81 (338)
Q Consensus 55 GGtGKTP~v-~~l~~~l~~~g~~~~ils 81 (338)
=|+|||=+. +++++.+.+.|.++.++.
T Consensus 48 TGsGKTlva~l~il~~l~~~~~k~l~i~ 75 (720)
T 2zj8_A 48 TASGKTLIAEIAMVHRILTQGGKAVYIV 75 (720)
T ss_dssp GGGCHHHHHHHHHHHHHHHHCSEEEEEC
T ss_pred CCCHHHHHHHHHHHHHHHHCCCCEEEEC
T ss_conf 9863999999999999996799199980
No 432
>2cvh_A DNA repair and recombination protein RADB; filament formation, homologous recombination, ATPase domain, hyperthermophIle; HET: DNA; 2.20A {Thermococcus kodakarensis} PDB: 2cvf_A*
Probab=30.62 E-value=24 Score=14.50 Aligned_cols=24 Identities=25% Similarity=0.235 Sum_probs=16.2
Q ss_pred CCCCCCHHHHHHHHHHHHCCCCEEEEE
Q ss_conf 788874899999999852473159876
Q gi|254780401|r 55 GGTGKTPTALAIAKAVIDKNLKPGFLS 81 (338)
Q Consensus 55 GGtGKTP~v~~l~~~l~~~g~~~~ils 81 (338)
-|||||-+++.++. +.|.++..++
T Consensus 29 ~GsGKT~lal~~a~---~~~~~~~~i~ 52 (220)
T 2cvh_A 29 YASGKTTLALQTGL---LSGKKVAYVD 52 (220)
T ss_dssp TTSSHHHHHHHHHH---HHCSEEEEEE
T ss_pred CCCCHHHHHHHHHH---HHCCCCEEEE
T ss_conf 99849999999999---8456863998
No 433
>3ney_A 55 kDa erythrocyte membrane protein; structural genomics consortium, SGC, 55 kDa erythrocyte MEMB protein; 2.26A {Homo sapiens}
Probab=30.54 E-value=24 Score=14.49 Aligned_cols=30 Identities=13% Similarity=0.323 Sum_probs=22.9
Q ss_pred CCCCCCEEEECCEEECCCCCCHHHHHHHHHHHH
Q ss_conf 338898899823000788874899999999852
Q gi|254780401|r 40 LHAPIPVICVGGFVMGGTGKTPTALAIAKAVID 72 (338)
Q Consensus 40 ~~~~~pVI~VGNitvGGtGKTP~v~~l~~~l~~ 72 (338)
++.+-|||.+|- -|+|||.+...|++...+
T Consensus 16 ~~~~r~Ivl~Gp---SG~GK~tl~~~L~~~~~~ 45 (197)
T 3ney_A 16 FQGRKTLVLIGA---SGVGRSHIKNALLSQNPE 45 (197)
T ss_dssp CCSCCEEEEECC---TTSSHHHHHHHHHHHCTT
T ss_pred CCCCCEEEEECC---CCCCHHHHHHHHHHHCCC
T ss_conf 479967999998---999999999999972965
No 434
>1njg_A DNA polymerase III subunit gamma; rossman-like fold, AAA+ ATPase domains, sensor 1, sensor 2, transferase; HET: DNA; 2.20A {Escherichia coli} SCOP: c.37.1.20 PDB: 1njf_A*
Probab=30.49 E-value=17 Score=15.50 Aligned_cols=26 Identities=31% Similarity=0.367 Sum_probs=20.1
Q ss_pred EEEECCEEECCCCCCHHHHHHHHHHHHCC
Q ss_conf 89982300078887489999999985247
Q gi|254780401|r 46 VICVGGFVMGGTGKTPTALAIAKAVIDKN 74 (338)
Q Consensus 46 VI~VGNitvGGtGKTP~v~~l~~~l~~~g 74 (338)
++-.|. =|+|||-++..+++.+....
T Consensus 48 ~L~~Gp---~G~GKt~~a~~~~~~l~~~~ 73 (250)
T 1njg_A 48 YLFSGT---RGVGKTSIARLLAKGLNCET 73 (250)
T ss_dssp EEEECS---TTSCHHHHHHHHHHHHHCTT
T ss_pred EEEECC---CCCCHHHHHHHHHHHHCCCC
T ss_conf 987899---99878999999999847855
No 435
>3io5_A Recombination and repair protein; storage dimer, inactive conformation, RECA like core domain, binding, DNA damage, DNA recombination; 2.40A {Enterobacteria phage T4}
Probab=30.39 E-value=24 Score=14.48 Aligned_cols=26 Identities=12% Similarity=0.098 Sum_probs=18.1
Q ss_pred CCCCCCHHHHHHHHHHHHC--CCCEEEE
Q ss_conf 7888748999999998524--7315987
Q gi|254780401|r 55 GGTGKTPTALAIAKAVIDK--NLKPGFL 80 (338)
Q Consensus 55 GGtGKTP~v~~l~~~l~~~--g~~~~il 80 (338)
-|||||-+++.++...+++ |..++.+
T Consensus 37 ~~sGKTtlaL~~~a~~~~q~~g~~v~yi 64 (333)
T 3io5_A 37 SKSFKSNFGLTMVSSYMRQYPDAVCLFY 64 (333)
T ss_dssp SSSSHHHHHHHHHHHHHHHCTTCEEEEE
T ss_pred CCCCHHHHHHHHHHHHHHHCCCCEEEEE
T ss_conf 9887999999999999985899389999
No 436
>1m7b_A RND3/RHOE small GTP-binding protein; small GTPase, signaling protein; HET: GTP; 2.00A {Homo sapiens} SCOP: c.37.1.8 PDB: 2v55_B*
Probab=30.31 E-value=17 Score=15.50 Aligned_cols=24 Identities=25% Similarity=0.361 Sum_probs=17.2
Q ss_pred CCCCCEEEECCEEECCCCCCHHHHHHH
Q ss_conf 388988998230007888748999999
Q gi|254780401|r 41 HAPIPVICVGGFVMGGTGKTPTALAIA 67 (338)
Q Consensus 41 ~~~~pVI~VGNitvGGtGKTP~v~~l~ 67 (338)
...+.|+.||+ +|+|||-++..++
T Consensus 5 ~~~~KivvvGd---~~vGKTsLi~r~~ 28 (184)
T 1m7b_A 5 NVKCKIVVVGD---SQCGKTALLHVFA 28 (184)
T ss_dssp -CEEEEEEEES---TTSSHHHHHHHHH
T ss_pred CEEEEEEEECC---CCCCHHHHHHHHH
T ss_conf 25269999998---9979999999997
No 437
>3c48_A Predicted glycosyltransferases; retaining glycosyltransferase, beta alpha beta, substrate assisted catalysis; 2.10A {Corynebacterium glutamicum} PDB: 3c4v_A* 3c4q_A*
Probab=30.21 E-value=24 Score=14.46 Aligned_cols=33 Identities=15% Similarity=0.245 Sum_probs=25.2
Q ss_pred ECCCCCCHHHHHHHHHHHHCCCCEEEEEECCCCCC
Q ss_conf 07888748999999998524731598760457877
Q gi|254780401|r 54 MGGTGKTPTALAIAKAVIDKNLKPGFLSRGYGRKS 88 (338)
Q Consensus 54 vGGtGKTP~v~~l~~~l~~~g~~~~ilsRGYg~~~ 88 (338)
.||++. .+..|++.|.++|++|.|+++.+....
T Consensus 41 ~GG~e~--~v~~La~~L~~~Gh~V~v~t~~~~~~~ 73 (438)
T 3c48_A 41 SGGMNV--YILSTATELAKQGIEVDIYTRATRPSQ 73 (438)
T ss_dssp --CHHH--HHHHHHHHHHHTTCEEEEEEECCCGGG
T ss_pred CCCHHH--HHHHHHHHHHHCCCEEEEEECCCCCCC
T ss_conf 679999--999999999977996999954788877
No 438
>2gf0_A GTP-binding protein DI-RAS1; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, transport protein; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=30.12 E-value=24 Score=14.45 Aligned_cols=22 Identities=32% Similarity=0.601 Sum_probs=16.2
Q ss_pred CCCEEEECCEEECCCCCCHHHHHHH
Q ss_conf 8988998230007888748999999
Q gi|254780401|r 43 PIPVICVGGFVMGGTGKTPTALAIA 67 (338)
Q Consensus 43 ~~pVI~VGNitvGGtGKTP~v~~l~ 67 (338)
...|+.||+ .|+|||-++..++
T Consensus 8 ~~KV~vvG~---~~vGKTsLi~r~~ 29 (199)
T 2gf0_A 8 DYRVVVFGA---GGVGKSSLVLRFV 29 (199)
T ss_dssp CEEEEEEEC---TTSSHHHHHHHHH
T ss_pred CCEEEEECC---CCCCHHHHHHHHH
T ss_conf 748999996---9988999999996
No 439
>1rrv_A Glycosyltransferase GTFD; GT-B, rossmann fold; HET: DVV TYD; 2.00A {Amycolatopsis orientalis} SCOP: c.87.1.5
Probab=30.12 E-value=24 Score=14.45 Aligned_cols=29 Identities=17% Similarity=0.288 Sum_probs=22.1
Q ss_pred ECCC-CCCHHHHHHHHHHHHCCCCEEEEEE
Q ss_conf 0788-8748999999998524731598760
Q gi|254780401|r 54 MGGT-GKTPTALAIAKAVIDKNLKPGFLSR 82 (338)
Q Consensus 54 vGGt-GKTP~v~~l~~~l~~~g~~~~ilsR 82 (338)
++|| |-.-=.+.||+.|.++|++|.+++-
T Consensus 7 ~~gt~Ghv~P~l~lA~~L~~rGh~V~~~t~ 36 (416)
T 1rrv_A 7 VCGTRGDVEIGVALADRLKALGVQTRMCAP 36 (416)
T ss_dssp EESCHHHHHHHHHHHHHHHHTTCEEEEEEC
T ss_pred CCCCHHHHHHHHHHHHHHHHCCCEEEEEEC
T ss_conf 798667899999999999987998999958
No 440
>3lte_A Response regulator; structural genomics, PSI, protein structure initiative, nysgrc, NEW YORK structural genomix research consortium; 2.00A {Bermanella marisrubri}
Probab=30.06 E-value=24 Score=14.44 Aligned_cols=25 Identities=12% Similarity=-0.033 Sum_probs=9.9
Q ss_pred CCCCCCHHHHHHHHCCCCCCEEEEC
Q ss_conf 3465201225664102457479971
Q gi|254780401|r 117 TIVTSDRKIGVQMLLQEGVDIIIMD 141 (338)
Q Consensus 117 v~V~~~R~~~~~~~~~~~~diiIlD 141 (338)
|.++.+=.+|...+.+..+|+||+|
T Consensus 33 v~~a~~g~eal~~l~~~~pdlillD 57 (132)
T 3lte_A 33 VEIAHNGFDAGIKLSTFEPAIMTLD 57 (132)
T ss_dssp EEEESSHHHHHHHHHHTCCSEEEEE
T ss_pred EEEECCHHHHHHHHHHCCCCEEEEE
T ss_conf 9998899999999974799999996
No 441
>3ojf_A Enoyl-[acyl-carrier-protein] reductase (FABL) (Na; enoyl-ACP reductase, tetramer, rossmann fold, NAD(P) binding oxidoreductase; HET: IMJ NDP; 2.20A {Bacillus cereus} PDB: 2qio_A* 3oje_A
Probab=29.99 E-value=24 Score=14.43 Aligned_cols=32 Identities=28% Similarity=0.339 Sum_probs=25.6
Q ss_pred EEECCCCCCHHHHHHHHHHHHCCCCEEEEEEC
Q ss_conf 00078887489999999985247315987604
Q gi|254780401|r 52 FVMGGTGKTPTALAIAKAVIDKNLKPGFLSRG 83 (338)
Q Consensus 52 itvGGtGKTP~v~~l~~~l~~~g~~~~ilsRG 83 (338)
|.+||+|---+=..+|+.|.+.|.+|.+..|.
T Consensus 10 lITGas~~rGIG~aiA~~la~~Ga~V~i~~~~ 41 (257)
T 3ojf_A 10 VVMGVANQRSIAWGIARSLHNAGAKLIFTYAG 41 (257)
T ss_dssp EEECCCSTTCHHHHHHHHHHTTTCEEEEEECS
T ss_pred EEECCCCCCHHHHHHHHHHHHCCCEEEEEECC
T ss_conf 99899998669999999999879999998288
No 442
>1vzy_A 33 kDa chaperonin; chaperone, heat shock protein, crystal engineering, molecular chaperone, redox-active center, PSI; 1.97A {Bacillus subtilis} SCOP: d.193.1.1 g.81.1.1
Probab=29.80 E-value=24 Score=14.41 Aligned_cols=50 Identities=20% Similarity=0.229 Sum_probs=32.0
Q ss_pred CEEEEEECCCCHHHHHHHHHHHC------------CCCCCCCCCCCCCCCCHHHHHHHHHHHH
Q ss_conf 63898741553578999887401------------0000122143323489899999999756
Q gi|254780401|r 223 KKVLAFSGIADTEKFFTTVRQLG------------ALIEQCYSFGDHAHLSDKKIAYLLDQAQ 273 (338)
Q Consensus 223 k~v~afsGIa~P~~F~~~L~~~g------------~~i~~~~~fpDHh~ys~~dl~~i~~~a~ 273 (338)
+.+--.|. =+.+++.++|..+| .--+.+....-||.|+.+|++.|++++.
T Consensus 229 ~~v~f~C~-CS~er~~~~L~~L~~~El~~i~~e~g~Iev~CeFC~~~Y~f~~~di~~l~~~~~ 290 (291)
T 1vzy_A 229 MPVRFHCP-CSKERFETAILGLGKKEIQDMIEEDGQAEAVCHFCNEKYLFTKEELEGLRDQTT 290 (291)
T ss_dssp EECEECCC-CCHHHHHHHHHTTCHHHHHHHHHHHSEEEEECTTTCCEEEEEHHHHHHHHHHCC
T ss_pred CCCCCCCC-CCHHHHHHHHHHCCHHHHHHHHHCCCCEEEEEECCCCEEEECHHHHHHHHHHCC
T ss_conf 21687998-999999999983699999999964997899976879989889999999986424
No 443
>1g41_A Heat shock protein HSLU; AAA-ATPase, CLPY, ATP-dependent proteolysis, chaperone; HET: ADP; 2.30A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1g3i_A* 1im2_A* 1kyi_A* 1g4a_E* 1g4b_E 1yyf_A* 1do0_A* 1do2_A* 1e94_E* 1hqy_E* 1ht1_E* 1ht2_E*
Probab=29.78 E-value=24 Score=14.41 Aligned_cols=26 Identities=35% Similarity=0.524 Sum_probs=20.4
Q ss_pred CCCCEEEECCEEECCCCCCHHHHHHHHHH
Q ss_conf 88988998230007888748999999998
Q gi|254780401|r 42 APIPVICVGGFVMGGTGKTPTALAIAKAV 70 (338)
Q Consensus 42 ~~~pVI~VGNitvGGtGKTP~v~~l~~~l 70 (338)
.|--|+.||.= |+|||=++..||+.+
T Consensus 49 ~ksNILliGPT---G~GKTlLArtLAk~l 74 (444)
T 1g41_A 49 TPKNILMIGPT---GVGKTEIARRLAKLA 74 (444)
T ss_dssp CCCCEEEECCT---TSSHHHHHHHHHHHT
T ss_pred CCCCEEEECCC---CCCHHHHHHHHHHHH
T ss_conf 75547898999---988899999999985
No 444
>1ojl_A Transcriptional regulatory protein ZRAR; response regulator, two component system, AAA domain, NTRC family, DNA-binding; HET: ATP; 3.0A {Salmonella typhimurium}
Probab=29.67 E-value=24 Score=14.39 Aligned_cols=28 Identities=29% Similarity=0.345 Sum_probs=19.6
Q ss_pred CCCCCCCCEEEECCEEECCCCCCHHHHHHHHHHHH
Q ss_conf 64338898899823000788874899999999852
Q gi|254780401|r 38 QRLHAPIPVICVGGFVMGGTGKTPTALAIAKAVID 72 (338)
Q Consensus 38 ~~~~~~~pVI~VGNitvGGtGKTP~v~~l~~~l~~ 72 (338)
+-...+.||+..|-- ||||+ .+|+.+..
T Consensus 20 ~~a~~~~pvlI~Ge~---GtGK~----~~Ar~iH~ 47 (304)
T 1ojl_A 20 MVAPSDATVLIHGDS---GTGKE----LVARALHA 47 (304)
T ss_dssp HHCSTTSCEEEESCT---TSCHH----HHHHHHHH
T ss_pred HHHCCCCCEEEECCC---CCCHH----HHHHHHHH
T ss_conf 996899968988989---97799----99999998
No 445
>3enk_A UDP-glucose 4-epimerase; seattle structural genomics center for infectious disease, ssgcid, isomerase, NAD; HET: NAD GUD; 1.90A {Burkholderia pseudomallei 1710B}
Probab=29.66 E-value=24 Score=14.39 Aligned_cols=29 Identities=17% Similarity=0.237 Sum_probs=22.4
Q ss_pred EEECCCCCCHHHHHHHHHHHHCCCCEEEEEE
Q ss_conf 0007888748999999998524731598760
Q gi|254780401|r 52 FVMGGTGKTPTALAIAKAVIDKNLKPGFLSR 82 (338)
Q Consensus 52 itvGGtGKTP~v~~l~~~l~~~g~~~~ilsR 82 (338)
|.+|||| =+-.+|++.|.++|++|..+-|
T Consensus 9 LITG~tG--fIG~~lv~~Ll~~g~~V~~~D~ 37 (341)
T 3enk_A 9 LVTGGAG--YIGSHTAVELLAHGYDVVIADN 37 (341)
T ss_dssp EEETTTS--HHHHHHHHHHHHTTCEEEEECC
T ss_pred EEECCCC--HHHHHHHHHHHHCCCEEEEEEC
T ss_conf 9977874--8999999999978398999978
No 446
>1tev_A UMP-CMP kinase; ploop, NMP binding region, LID region, conformational changes, transferase; 2.10A {Homo sapiens} SCOP: c.37.1.1
Probab=29.62 E-value=18 Score=15.29 Aligned_cols=16 Identities=25% Similarity=0.353 Sum_probs=14.3
Q ss_pred CCCCCCHHHHHHHHHH
Q ss_conf 7888748999999998
Q gi|254780401|r 55 GGTGKTPTALAIAKAV 70 (338)
Q Consensus 55 GGtGKTP~v~~l~~~l 70 (338)
-|+|||..+..||+.+
T Consensus 12 pGsGKsT~a~~Lae~~ 27 (196)
T 1tev_A 12 PGAGKGTQCARIVEKY 27 (196)
T ss_dssp TTSSHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHH
T ss_conf 9999899999999985
No 447
>1ukz_A Uridylate kinase; transferase; HET: ADP AMP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1uky_A*
Probab=29.53 E-value=25 Score=14.38 Aligned_cols=26 Identities=31% Similarity=0.365 Sum_probs=18.5
Q ss_pred CCCEEEECCEEECCCCCCHHHHHHHHHH
Q ss_conf 8988998230007888748999999998
Q gi|254780401|r 43 PIPVICVGGFVMGGTGKTPTALAIAKAV 70 (338)
Q Consensus 43 ~~pVI~VGNitvGGtGKTP~v~~l~~~l 70 (338)
.+|||.|=- .-|+|||-.+..|++.+
T Consensus 14 ~~~iI~i~G--~pGSGKsT~ak~La~~~ 39 (203)
T 1ukz_A 14 QVSVIFVLG--GPGAGKGTQCEKLVKDY 39 (203)
T ss_dssp TCEEEEEEC--STTSSHHHHHHHHHHHS
T ss_pred CCEEEEEEC--CCCCCHHHHHHHHHHHH
T ss_conf 983899989--99998799999999995
No 448
>2o1e_A YCDH; alpha-beta protein, structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; 2.60A {Bacillus subtilis}
Probab=29.52 E-value=25 Score=14.38 Aligned_cols=60 Identities=12% Similarity=0.102 Sum_probs=45.6
Q ss_pred CCCCCEEEEEECCCCHHHHHHHHHHHCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCEEEECH
Q ss_conf 11686389874155357899988740100001221433234898999999997564798799854
Q gi|254780401|r 219 DLSGKKVLAFSGIADTEKFFTTVRQLGALIEQCYSFGDHAHLSDKKIAYLLDQAQQKGLILVTTA 283 (338)
Q Consensus 219 ~l~~k~v~afsGIa~P~~F~~~L~~~g~~i~~~~~fpDHh~ys~~dl~~i~~~a~~~~~~iiTTE 283 (338)
+.+++.++ .....|-..++.+|++.+..........-|.+++.++.+..++.+...|-+|
T Consensus 187 ~~~~~~~v-----~~H~a~~Yf~~~~gl~~~~~~~~~~~~eps~~~l~~l~~~ik~~~v~~if~e 246 (312)
T 2o1e_A 187 KAEKKEFI-----TQHTAFGYLAKEYGLKQVPIAGLSPDQEPSAASLAKLKTYAKEHNVKVIYFE 246 (312)
T ss_dssp SCSCCEEE-----ESSCTTHHHHHHTTCEEEECSSCCSSSCCCHHHHHHHHHHTTSSCCCEEECS
T ss_pred HHCCCCCE-----EECCCCHHHHHHCCCEEEEEECCCCCCCCCHHHHHHHHHHHHHCCCCEEEEE
T ss_conf 51245310-----1243001068768965886303576457675679999999998399789982
No 449
>2va8_A SSO2462, SKI2-type helicase; hydrolase, DNA repair, ATP-binding, nucleotide-binding; 2.30A {Sulfolobus solfataricus}
Probab=29.43 E-value=25 Score=14.37 Aligned_cols=27 Identities=26% Similarity=0.401 Sum_probs=18.5
Q ss_pred CCCCCCHHH-HHHHHHHHHCCCCEEEEE
Q ss_conf 788874899-999999852473159876
Q gi|254780401|r 55 GGTGKTPTA-LAIAKAVIDKNLKPGFLS 81 (338)
Q Consensus 55 GGtGKTP~v-~~l~~~l~~~g~~~~ils 81 (338)
=|+|||=.. +++.+.+.+.+.++.+|+
T Consensus 55 TGsGKTl~~~l~il~~l~~~~~k~l~i~ 82 (715)
T 2va8_A 55 TGSGKTLIAEMGIISFLLKNGGKAIYVT 82 (715)
T ss_dssp TTSCHHHHHHHHHHHHHHHSCSEEEEEC
T ss_pred CCCHHHHHHHHHHHHHHHHCCCEEEEEC
T ss_conf 9854999999999999986799199981
No 450
>2qr3_A Two-component system response regulator; structural genomics, signal receiver, PSI-2, protein structure initiative; 1.80A {Bacteroides fragilis YCH46}
Probab=29.39 E-value=18 Score=15.37 Aligned_cols=26 Identities=19% Similarity=0.263 Sum_probs=13.3
Q ss_pred CCCCCCCHHHHHHHHCCCCCCEEEEC
Q ss_conf 63465201225664102457479971
Q gi|254780401|r 116 VTIVTSDRKIGVQMLLQEGVDIIIMD 141 (338)
Q Consensus 116 pv~V~~~R~~~~~~~~~~~~diiIlD 141 (338)
.|..+.+-.+|...+.+..+|+||+|
T Consensus 29 ~v~~a~~~~~al~~l~~~~~dlillD 54 (140)
T 2qr3_A 29 KVITLSSPVSLSTVLREENPEVVLLD 54 (140)
T ss_dssp EEEEECCHHHHHHHHHHSCEEEEEEE
T ss_pred EEEEECCHHHHHHHHHHCCCCEEEEE
T ss_conf 99998999999999972799999991
No 451
>2a35_A Hypothetical protein PA4017; alpha-beta-alpha sandwich, structural genomics, PSI, protein structure initiative; 1.50A {Pseudomonas aeruginosa PAO1} SCOP: c.2.1.2
Probab=29.35 E-value=25 Score=14.36 Aligned_cols=29 Identities=21% Similarity=0.250 Sum_probs=20.1
Q ss_pred EEECCCCCCHHHHHHHHHHHHCCC--CEEEEEE
Q ss_conf 000788874899999999852473--1598760
Q gi|254780401|r 52 FVMGGTGKTPTALAIAKAVIDKNL--KPGFLSR 82 (338)
Q Consensus 52 itvGGtGKTP~v~~l~~~l~~~g~--~~~ilsR 82 (338)
+.+||||- +=.+|++.|.+.|+ ++..++|
T Consensus 9 LItGatG~--iG~~lv~~L~~~~~~~~V~~~~R 39 (215)
T 2a35_A 9 LLAGATGL--TGEHLLDRILSEPTLAKVIAPAR 39 (215)
T ss_dssp EEECTTSH--HHHHHHHHHHHCTTCCEEECCBS
T ss_pred EEECCCCH--HHHHHHHHHHHCCCEEEEEEEEC
T ss_conf 99899838--99999999997869579999737
No 452
>1pzn_A RAD51, DNA repair and recombination protein RAD51, RADA; heptameric ring, heptamer, ring, oligomer, RAD51 polymerization motif; HET: DNA; 2.85A {Pyrococcus furiosus} SCOP: a.60.4.1 c.37.1.11
Probab=29.32 E-value=25 Score=14.35 Aligned_cols=24 Identities=29% Similarity=0.191 Sum_probs=17.2
Q ss_pred ECCEEE----CCCCCCHHHHHHHHHHHH
Q ss_conf 823000----788874899999999852
Q gi|254780401|r 49 VGGFVM----GGTGKTPTALAIAKAVID 72 (338)
Q Consensus 49 VGNitv----GGtGKTP~v~~l~~~l~~ 72 (338)
.|.+|. -|||||-+++-++-..+.
T Consensus 130 ~G~itei~G~~GsGKTqlal~la~~~q~ 157 (349)
T 1pzn_A 130 TQAITEVFGEFGSGKTQLAHTLAVMVQL 157 (349)
T ss_dssp SSEEEEEEESTTSSHHHHHHHHHHHTTS
T ss_pred CCEEEEEEECCCCCHHHHHHHHHHHHHH
T ss_conf 6827898717888674999999999987
No 453
>1jeo_A MJ1247, hypothetical protein MJ1247; RUMP pathway, phosphosugar, 3-hexulose-6-phosphate isomerase, PHI, structural genomics; HET: CME CIT; 2.00A {Methanocaldococcus jannaschii} SCOP: c.80.1.3
Probab=29.32 E-value=25 Score=14.35 Aligned_cols=94 Identities=13% Similarity=0.079 Sum_probs=41.0
Q ss_pred HHHHHHHHHHHHCCCCEEEEEECCCCCCCCCEEEECCCCCHHHHCCHHHHHHHCCCCCCCCCHHHHHHHHCCCCCCEEEE
Q ss_conf 89999999985247315987604578777755871456788770421233220576346520122566410245747997
Q gi|254780401|r 61 PTALAIAKAVIDKNLKPGFLSRGYGRKSRISFRVDLEKHSAYDVGDEPLLLARRAVTIVTSDRKIGVQMLLQEGVDIIIM 140 (338)
Q Consensus 61 P~v~~l~~~l~~~g~~~~ilsRGYg~~~~~~~~v~~~~~~~~~vGDEp~lla~~~pv~V~~~R~~~~~~~~~~~~diiIl 140 (338)
+++.+++..|...|+....++...-.. .+-||=-..++..+ -.++=..+++.+.+.|+.+|..
T Consensus 53 ~ia~~~~~~l~~~g~~~~~~~~~~~~~--------------~~~~Dv~i~iS~sG---~t~~~i~~~~~ak~~g~~vI~I 115 (180)
T 1jeo_A 53 YIGRCFAMRLMHLGFKSYFVGETTTPS--------------YEKDDLLILISGSG---RTESVLTVAKKAKNINNNIIAI 115 (180)
T ss_dssp HHHHHHHHHHHHTTCCEEETTSTTCCC--------------CCTTCEEEEEESSS---CCHHHHHHHHHHHTTCSCEEEE
T ss_pred HHHHHHHHHHHHCCCCEEEEEECCCCC--------------CCCCCEEEEECCCC---CCHHHHHHHHHHHHCCCCEEEE
T ss_conf 999999999997399718864212356--------------89999899975999---8089999999999759979999
Q ss_pred CCCCCCCCCCCEEEEEEECCCCCCCCCCCCCCHHHH
Q ss_conf 183223441230699996184335665537613652
Q gi|254780401|r 141 DDGFHSADLQADFSLIVVNSHRGLGNGLVFPAGPLR 176 (338)
Q Consensus 141 DDGfQh~~l~rdl~Ivl~d~~~~~gn~~llPaGpLR 176 (338)
=+. -+ .+.+--|+++.- +.......|.|..=
T Consensus 116 T~~-~~-~l~~~aD~~l~~---~~~~~~~~~~~~~~ 146 (180)
T 1jeo_A 116 VCE-CG-NVVEFADLTIPL---EVKKSKYLPMGTTF 146 (180)
T ss_dssp ESS-CC-GGGGGCSEEEEC---CCCCBTTBCTTHHH
T ss_pred ECC-CC-CCHHHCCEEEEC---CCCCCCCCCCCHHH
T ss_conf 699-99-757777788862---56764567573899
No 454
>1vjg_A Putative lipase from the G-D-S-L family; 17135349, ALR1529, structural genomics, JCSG, PSI, protein structure initiative; 2.01A {Nostoc SP} SCOP: c.23.10.6 PDB: 1z8h_A
Probab=29.29 E-value=25 Score=14.35 Aligned_cols=53 Identities=15% Similarity=0.150 Sum_probs=38.8
Q ss_pred HCCCCCCCCCEEEECCEEECCC---CCCHHHHHHHHHHHHCCCCEEEEEECCCCCC
Q ss_conf 0464338898899823000788---8748999999998524731598760457877
Q gi|254780401|r 36 RGQRLHAPIPVICVGGFVMGGT---GKTPTALAIAKAVIDKNLKPGFLSRGYGRKS 88 (338)
Q Consensus 36 ~~~~~~~~~pVI~VGNitvGGt---GKTP~v~~l~~~l~~~g~~~~ilsRGYg~~~ 88 (338)
..++-+.++.|++||+=++=|. .....+.-|.+.|.+.+..+.++..|.++.+
T Consensus 13 ~~~~~~~~~rI~~iGDS~t~G~g~~~~~gw~~~l~~~l~~~~~~v~~~n~g~~g~~ 68 (218)
T 1vjg_A 13 MTKQSKTQIRICFVGDSFVNGTGDPECLGWTGRVCVNANKKGYDVTYYNLGIRRDT 68 (218)
T ss_dssp ----CCEEEEEEEEESHHHHTTTCTTSCHHHHHHHHHHHHTTEEEEEEEEECTTCC
T ss_pred CCCCCCCCCEEEEECHHHCCCCCCCCCCCHHHHHHHHHHHCCCCEEEEEEEECCCC
T ss_conf 56788999889998605521869986687899999999854997699976515886
No 455
>1m2k_A Silent information regulator 2; protein-ligand complex, gene regulation; HET: APR; 1.47A {Archaeoglobus fulgidus} SCOP: c.31.1.5 PDB: 1m2g_A* 1m2h_A* 1m2j_A* 1m2n_A* 1ici_A*
Probab=29.25 E-value=23 Score=14.63 Aligned_cols=28 Identities=21% Similarity=0.428 Sum_probs=15.9
Q ss_pred CCCCCHHHHHCCHHHHHHHHHHHHCCCCH
Q ss_conf 53761365210025566514544204412
Q gi|254780401|r 168 LVFPAGPLRVPLSRQLSYVDAILYVGNKK 196 (338)
Q Consensus 168 ~llPaGpLREp~~~~l~rad~vi~~~~~~ 196 (338)
.-+|...+++-. +.++++|++++.|..-
T Consensus 161 E~lp~~~~~~a~-~~~~~~DlllviGTSl 188 (249)
T 1m2k_A 161 EMLPPDVLDRAM-REVERADVIIVAGTSA 188 (249)
T ss_dssp SCCCHHHHHHHH-HHHHHCSEEEEESCCS
T ss_pred CCCCHHHHHHHH-HHCCCCCEEEEECCCC
T ss_conf 747889999999-7223699999937886
No 456
>1aw2_A Triosephosphate isomerase; psychrophilic, vibrio marinus; 2.65A {Moritella marina} SCOP: c.1.1.1 PDB: 1aw1_A
Probab=29.22 E-value=8 Score=17.83 Aligned_cols=10 Identities=20% Similarity=0.780 Sum_probs=4.4
Q ss_pred EEECCEEECC
Q ss_conf 9982300078
Q gi|254780401|r 47 ICVGGFVMGG 56 (338)
Q Consensus 47 I~VGNitvGG 56 (338)
|.+||--+=|
T Consensus 5 iIi~NWKMn~ 14 (256)
T 1aw2_A 5 VVMGNWKLNG 14 (256)
T ss_dssp EEEEECCBCC
T ss_pred EEEEECCCCC
T ss_conf 9999833479
No 457
>3ia7_A CALG4; glycosysltransferase, calicheamicin, enediyne, transf; 1.91A {Micromonospora echinospora}
Probab=29.21 E-value=25 Score=14.34 Aligned_cols=33 Identities=9% Similarity=0.231 Sum_probs=26.5
Q ss_pred EEECCCCCCHHHHHHHHHHHHCCCCEEEEEECC
Q ss_conf 000788874899999999852473159876045
Q gi|254780401|r 52 FVMGGTGKTPTALAIAKAVIDKNLKPGFLSRGY 84 (338)
Q Consensus 52 itvGGtGKTP~v~~l~~~l~~~g~~~~ilsRGY 84 (338)
++.||.|-.==.+.|++.|.++|++|.+++-+.
T Consensus 10 ~~~~g~GH~~p~l~la~~L~~rGh~V~~~~~~~ 42 (402)
T 3ia7_A 10 ANVQGHGHVYPSLGLVSELARRGHRITYVTTPL 42 (402)
T ss_dssp ECCSSHHHHHHHHHHHHHHHHTTCEEEEEECHH
T ss_pred ECCCCHHHHHHHHHHHHHHHHCCCEEEEEECCC
T ss_conf 899846479999999999998889899997810
No 458
>2q3h_A RAS homolog gene family, member U; GTPase, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.73A {Homo sapiens}
Probab=28.98 E-value=20 Score=15.05 Aligned_cols=22 Identities=27% Similarity=0.498 Sum_probs=15.6
Q ss_pred CCCCEEEECCEEECCCCCCHHHHHH
Q ss_conf 8898899823000788874899999
Q gi|254780401|r 42 APIPVICVGGFVMGGTGKTPTALAI 66 (338)
Q Consensus 42 ~~~pVI~VGNitvGGtGKTP~v~~l 66 (338)
-++.|+.||. +|+|||-++..+
T Consensus 19 k~iKvvivG~---~~vGKTSLi~r~ 40 (201)
T 2q3h_A 19 RGVKCVLVGD---GAVGKTSLVVSY 40 (201)
T ss_dssp -CEEEEEECS---TTSSHHHHHHHH
T ss_pred CCEEEEEECC---CCCCHHHHHHHH
T ss_conf 7318999998---998989999999
No 459
>2j0v_A RAC-like GTP-binding protein ARAC7; nucleotide-binding protein, ROP9, atrac7, membrane, palmitate, RHO GTPase; HET: GDP; 1.78A {Arabidopsis thaliana}
Probab=28.97 E-value=21 Score=14.94 Aligned_cols=22 Identities=32% Similarity=0.514 Sum_probs=16.2
Q ss_pred CCEEEECCEEECCCCCCHHHHHHHH
Q ss_conf 9889982300078887489999999
Q gi|254780401|r 44 IPVICVGGFVMGGTGKTPTALAIAK 68 (338)
Q Consensus 44 ~pVI~VGNitvGGtGKTP~v~~l~~ 68 (338)
+.|+.||+ .|+|||-++..++.
T Consensus 10 iKI~viG~---~~vGKTsLi~r~~~ 31 (212)
T 2j0v_A 10 IKCVTVGD---GAVGKTCMLICYTS 31 (212)
T ss_dssp EEEEEEES---TTSSHHHHHHHHHH
T ss_pred EEEEEECC---CCCCHHHHHHHHHH
T ss_conf 89999997---99788999999972
No 460
>1qf9_A UMP/CMP kinase, protein (uridylmonophosphate/cytidylmonophosphate kinase); nucleoside monophosphate kinase, NMP kinase; HET: ADP C5P; 1.70A {Dictyostelium discoideum} SCOP: c.37.1.1 PDB: 1uke_A* 2ukd_A* 3ukd_A* 4ukd_A* 5ukd_A*
Probab=28.89 E-value=19 Score=15.15 Aligned_cols=16 Identities=25% Similarity=0.437 Sum_probs=13.6
Q ss_pred CCCCCCHHHHHHHHHH
Q ss_conf 7888748999999998
Q gi|254780401|r 55 GGTGKTPTALAIAKAV 70 (338)
Q Consensus 55 GGtGKTP~v~~l~~~l 70 (338)
-|+|||-.+..|++.+
T Consensus 15 pGsGKsTia~~Lae~~ 30 (194)
T 1qf9_A 15 PGSGKGTQCANIVRDF 30 (194)
T ss_dssp TTSSHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHH
T ss_conf 9998899999999996
No 461
>1fnb_A Ferredoxin-NADP+ reductase; oxidoreductase (NADP+(A),ferredoxin(A)); HET: FAD; 1.70A {Spinacia oleracea} SCOP: b.43.4.2 c.25.1.1 PDB: 1fnc_A* 1fnd_A* 1bx1_A* 1frq_A* 1frn_A* 1bx0_A* 1qg0_A* 1qga_A* 1qfz_A* 1qfy_A* 1gaw_A* 1gaq_A* 1sm4_A*
Probab=28.81 E-value=19 Score=15.18 Aligned_cols=22 Identities=5% Similarity=0.099 Sum_probs=9.7
Q ss_pred CCEEEEEECCCCHHHHHHHHHH
Q ss_conf 8638987415535789998874
Q gi|254780401|r 222 GKKVLAFSGIADTEKFFTTVRQ 243 (338)
Q Consensus 222 ~k~v~afsGIa~P~~F~~~L~~ 243 (338)
++++++++|---=..|..+|+.
T Consensus 162 ~~~lvlIAgGtGIaP~~s~l~~ 183 (314)
T 1fnb_A 162 NATIIMLGTGTGIAPFRSFLWK 183 (314)
T ss_dssp TCEEEEEEEGGGGHHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHH
T ss_conf 9878999668766449999999
No 462
>2pl1_A Transcriptional regulatory protein PHOP; CHEY-like fold, response regulator, beryllium fluoride, transcription factor, activated, virulence; 1.90A {Escherichia coli} SCOP: c.23.1.1 PDB: 2pkx_A
Probab=28.80 E-value=25 Score=14.29 Aligned_cols=18 Identities=6% Similarity=0.111 Sum_probs=8.8
Q ss_pred EEEEEECCCCHHHHHHHH
Q ss_conf 389874155357899988
Q gi|254780401|r 224 KVLAFSGIADTEKFFTTV 241 (338)
Q Consensus 224 ~v~afsGIa~P~~F~~~L 241 (338)
+++++|+-++++.-.+.+
T Consensus 74 pii~lt~~~~~~~~~~a~ 91 (121)
T 2pl1_A 74 PILVLTARESWQDKVEVL 91 (121)
T ss_dssp CEEEEESCCCHHHHHHHH
T ss_pred CEEEEECCCCHHHHHHHH
T ss_conf 189997889999999999
No 463
>1tk9_A Phosphoheptose isomerase 1; lipopolysaccharide biosynthesis, structural genomics, NYSGXRC, LPC1_camje, PSI, protein structure initiative; 2.10A {Campylobacter jejuni} SCOP: c.80.1.3
Probab=28.76 E-value=25 Score=14.29 Aligned_cols=11 Identities=0% Similarity=-0.118 Sum_probs=3.8
Q ss_pred HHHHHCCCCCC
Q ss_conf 56641024574
Q gi|254780401|r 126 GVQMLLQEGVD 136 (338)
Q Consensus 126 ~~~~~~~~~~d 136 (338)
+++++.+.+..
T Consensus 129 a~~~Ak~~g~~ 139 (188)
T 1tk9_A 129 ALKKAKELNML 139 (188)
T ss_dssp HHHHHHHTTCE
T ss_pred HHHHHHHCCCE
T ss_conf 99999987998
No 464
>2bwj_A Adenylate kinase 5; phosphoryl transfer reaction, transferase; HET: AMP; 2.3A {Homo sapiens}
Probab=28.75 E-value=19 Score=15.12 Aligned_cols=24 Identities=25% Similarity=0.502 Sum_probs=18.0
Q ss_pred CCEEEE-CCEEECCCCCCHHHHHHHHHH
Q ss_conf 988998-230007888748999999998
Q gi|254780401|r 44 IPVICV-GGFVMGGTGKTPTALAIAKAV 70 (338)
Q Consensus 44 ~pVI~V-GNitvGGtGKTP~v~~l~~~l 70 (338)
.++|.| |- =|+|||-.+..|++.+
T Consensus 12 ~kiI~l~G~---pGSGKsT~a~~La~~~ 36 (199)
T 2bwj_A 12 CKIIFIIGG---PGSGKGTQCEKLVEKY 36 (199)
T ss_dssp SCEEEEEEC---TTSSHHHHHHHHHHHH
T ss_pred CCEEEEECC---CCCCHHHHHHHHHHHH
T ss_conf 868999899---9999899999999986
No 465
>2gxq_A Heat resistant RNA dependent ATPase; RNA helicase, atomic resolution, AMP complex, ribosome biogenesis, thermophilic, hydrolase; HET: AMP; 1.20A {Thermus thermophilus HB27} PDB: 2gxs_A* 2gxu_A
Probab=28.63 E-value=25 Score=14.27 Aligned_cols=16 Identities=31% Similarity=0.181 Sum_probs=9.2
Q ss_pred ECCCCCCHHHHHHHHHHH
Q ss_conf 078887489999999985
Q gi|254780401|r 54 MGGTGKTPTALAIAKAVI 71 (338)
Q Consensus 54 vGGtGKTP~v~~l~~~l~ 71 (338)
-=|||||-. |+.-.+.
T Consensus 46 ~TGsGKTla--y~lp~l~ 61 (207)
T 2gxq_A 46 RTGTGKTLA--FALPIAE 61 (207)
T ss_dssp CTTSCHHHH--HHHHHHH
T ss_pred CCCCCCCCE--EECCHHH
T ss_conf 899997434--3050776
No 466
>1tht_A Thioesterase; 2.10A {Vibrio harveyi} SCOP: c.69.1.13
Probab=28.53 E-value=26 Score=14.26 Aligned_cols=83 Identities=8% Similarity=-0.050 Sum_probs=40.0
Q ss_pred HHHHHHHHHHCCCCEEEE-EECCCCCCCCCEEEECCCCCHHHHCCHHHHHHHC--CCC-CCCCCHHH--HHHHHCCCCCC
Q ss_conf 999999985247315987-6045787777558714567887704212332205--763-46520122--56641024574
Q gi|254780401|r 63 ALAIAKAVIDKNLKPGFL-SRGYGRKSRISFRVDLEKHSAYDVGDEPLLLARR--AVT-IVTSDRKI--GVQMLLQEGVD 136 (338)
Q Consensus 63 v~~l~~~l~~~g~~~~il-sRGYg~~~~~~~~v~~~~~~~~~vGDEp~lla~~--~pv-~V~~~R~~--~~~~~~~~~~d 136 (338)
-..++++|.++||.|... .||++|.+.+.....+-.....++-+---.+... .++ ++|..--- +...+.+...+
T Consensus 51 ~~~la~~L~~~Gy~V~~~D~rGh~G~S~g~~~~~~~~~~~~d~~~vi~~l~~~~~~~i~l~G~S~GG~ial~~A~~~~v~ 130 (305)
T 1tht_A 51 FAGLAEYLSTNGFHVFRYDSLHHVGLSSGSIDEFTMTTGKNSLCTVYHWLQTKGTQNIGLIAASLSARVAYEVISDLELS 130 (305)
T ss_dssp GHHHHHHHHTTTCCEEEECCCBCC--------CCCHHHHHHHHHHHHHHHHHTTCCCEEEEEETHHHHHHHHHTTTSCCS
T ss_pred HHHHHHHHHHCCCEEEEEECCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCCCEEEEEECCHHHHHHHHHHCCCCCC
T ss_conf 99999999978998999707999988888564333015689999999874126985499998488499999984478845
Q ss_pred EEEECCCCC
Q ss_conf 799718322
Q gi|254780401|r 137 IIIMDDGFH 145 (338)
Q Consensus 137 iiIlDDGfQ 145 (338)
.+|+.-|+-
T Consensus 131 ~lv~~~~~~ 139 (305)
T 1tht_A 131 FLITAVGVV 139 (305)
T ss_dssp EEEEESCCS
T ss_pred EEEEECCCC
T ss_conf 499975756
No 467
>3f6p_A Transcriptional regulatory protein YYCF; unphosphorelated, receiver domain, cytoplasm, DNA-binding, phosphoprotein, transcription regulation; 1.95A {Bacillus subtilis} PDB: 2zwm_A
Probab=28.36 E-value=26 Score=14.24 Aligned_cols=27 Identities=22% Similarity=0.262 Sum_probs=13.8
Q ss_pred CCCCCCCHHHHHHHHCCCCCCEEEECC
Q ss_conf 634652012256641024574799718
Q gi|254780401|r 116 VTIVTSDRKIGVQMLLQEGVDIIIMDD 142 (338)
Q Consensus 116 pv~V~~~R~~~~~~~~~~~~diiIlDD 142 (338)
-|..+.+=.+|...+.+..+|+||+|=
T Consensus 28 ~v~~a~~~~~al~~l~~~~~dlii~D~ 54 (120)
T 3f6p_A 28 EVHCAHDGNEAVEMVEELQPDLILLDI 54 (120)
T ss_dssp EEEEESSHHHHHHHHHTTCCSEEEEET
T ss_pred EEEEECCHHHHHHHHHCCCCCEEEEEC
T ss_conf 999989999999999718999999829
No 468
>3c3m_A Response regulator receiver protein; structural genomics, unknown function, PSI-2, protein structure initiative; HET: MSE; 1.70A {Methanoculleus marisnigri JR1}
Probab=28.14 E-value=26 Score=14.21 Aligned_cols=25 Identities=16% Similarity=0.254 Sum_probs=11.6
Q ss_pred CCCCCCHHHHHHHHCCCCCCEEEEC
Q ss_conf 3465201225664102457479971
Q gi|254780401|r 117 TIVTSDRKIGVQMLLQEGVDIIIMD 141 (338)
Q Consensus 117 v~V~~~R~~~~~~~~~~~~diiIlD 141 (338)
|..+.+=.+|...+.+..+|+||+|
T Consensus 30 v~~a~~g~eal~~l~~~~pdliilD 54 (138)
T 3c3m_A 30 PITAFSGEECLEALNATPPDLVLLD 54 (138)
T ss_dssp EEEESSHHHHHHHHHHSCCSEEEEE
T ss_pred EEEECCHHHHHHHHHCCCCCEEEEE
T ss_conf 9998999999999753899899970
No 469
>3jvi_A Protein tyrosine phosphatase; niaid, ssgcid, seattle structural genomics center for infectious disease, parasitic protozoan; 1.80A {Entamoeba histolytica hm-1} PDB: 3js5_A* 3ily_A 3ido_A*
Probab=27.71 E-value=25 Score=14.29 Aligned_cols=38 Identities=32% Similarity=0.461 Sum_probs=27.1
Q ss_pred CCCCEEEECCEEECCCCCCHHHHHHHHHHHH-CCC--CEEEEEECC
Q ss_conf 8898899823000788874899999999852-473--159876045
Q gi|254780401|r 42 APIPVICVGGFVMGGTGKTPTALAIAKAVID-KNL--KPGFLSRGY 84 (338)
Q Consensus 42 ~~~pVI~VGNitvGGtGKTP~v~~l~~~l~~-~g~--~~~ilsRGY 84 (338)
..|-.||.||+ .-.|++.+|.+.+.+ +|. ++-+-|.|=
T Consensus 5 mkILFVCtgN~-----cRSpmAEall~~~~~~~g~~~~~~v~SaG~ 45 (161)
T 3jvi_A 5 MKLLFVCLGNI-----CRSPAAEAVMKKVIQNHHLTEKYICDSAGT 45 (161)
T ss_dssp EEEEEEESSSS-----SHHHHHHHHHHHHHHHTTCGGGEEEEEEES
T ss_pred EEEEEECCCCH-----HHHHHHHHHHHHHHHHCCCCCCEEEEEEEE
T ss_conf 49999879978-----799999999999999769998708997643
No 470
>3d8u_A PURR transcriptional regulator; APC91343.1, vibrio parahaemolyticus RIMD 2210633, structural genomics, PSI-2; HET: MSE; 2.88A {Vibrio parahaemolyticus}
Probab=27.70 E-value=26 Score=14.16 Aligned_cols=20 Identities=5% Similarity=-0.107 Sum_probs=10.8
Q ss_pred HHHHHHHHHCCCCEEEEEEC
Q ss_conf 99999985247315987604
Q gi|254780401|r 64 LAIAKAVIDKNLKPGFLSRG 83 (338)
Q Consensus 64 ~~l~~~l~~~g~~~~ilsRG 83 (338)
.-+.+.+++.||++.+.+-+
T Consensus 23 ~gi~~~~~~~Gy~~~~~~s~ 42 (275)
T 3d8u_A 23 PSFQQALNKAGYQLLLGYSD 42 (275)
T ss_dssp HHHHHHHHHTSCEECCEECT
T ss_pred HHHHHHHHHCCCEEEEEECC
T ss_conf 99999999859999999689
No 471
>2r44_A Uncharacterized protein; putative ATPase, structural genomics, joint center for struc genomics, JCSG; HET: MSE PG4; 2.00A {Cytophaga hutchinsonii atcc 33406}
Probab=27.67 E-value=10 Score=17.04 Aligned_cols=25 Identities=24% Similarity=0.157 Sum_probs=18.1
Q ss_pred CCEEEECCEEECCCCCCHHHHHHHHHHH
Q ss_conf 9889982300078887489999999985
Q gi|254780401|r 44 IPVICVGGFVMGGTGKTPTALAIAKAVI 71 (338)
Q Consensus 44 ~pVI~VGNitvGGtGKTP~v~~l~~~l~ 71 (338)
-+|+-+|-= |||||-++..|++.+.
T Consensus 47 ~~vLl~Gpp---GtGKT~lar~la~~~~ 71 (331)
T 2r44_A 47 GHILLEGVP---GLAKTLSVNTLAKTMD 71 (331)
T ss_dssp CCEEEESCC---CHHHHHHHHHHHHHTT
T ss_pred CCEEEECCC---CCHHHHHHHHHHHHCC
T ss_conf 958998999---8529999999997557
No 472
>1g8p_A Magnesium-chelatase 38 kDa subunit; parallel beta sheet, P-loop, rossman fold, AAA+, photosynthesis, metal transport; 2.10A {Rhodobacter capsulatus} SCOP: c.37.1.20
Probab=27.62 E-value=19 Score=15.10 Aligned_cols=48 Identities=19% Similarity=0.162 Sum_probs=26.0
Q ss_pred CCEEEECCCCCCCCCCCEEEEEEECCCCCCCCCCCCCCHHHHHCCHHHHHHHHHHHHCCCC
Q ss_conf 7479971832234412306999961843356655376136521002556651454420441
Q gi|254780401|r 135 VDIIIMDDGFHSADLQADFSLIVVNSHRGLGNGLVFPAGPLRVPLSRQLSYVDAILYVGNK 195 (338)
Q Consensus 135 ~diiIlDDGfQh~~l~rdl~Ivl~d~~~~~gn~~llPaGpLREp~~~~l~rad~vi~~~~~ 195 (338)
-.+-|--+|..+. ....++++-+.+|.. |.|.++ .+.|.|+.+....+
T Consensus 171 ~~v~i~r~g~~~~---~P~~~~liaa~Np~~-------~~l~~~---llDRf~~~i~~~~~ 218 (350)
T 1g8p_A 171 GENVVERDGLSIR---HPARFVLVGSGNPEE-------GDLRPQ---LLDRFGLSVEVLSP 218 (350)
T ss_dssp SEEEECCTTCCEE---EECCEEEEEEECSCS-------CCCCHH---HHTTCSEEEECCCC
T ss_pred CCEEECCCCCEEC---CCCCEEEEECCCCCC-------CCCCHH---HHHHCCCEEECCCC
T ss_conf 8667568872654---787669983256777-------768845---65031525646797
No 473
>2eix_A NADH-cytochrome B5 reductase; flavoprotein, FAD-binding domain, NADH-binding, oxidoreductase; HET: FAD; 1.56A {Physarum polycephalum}
Probab=27.57 E-value=26 Score=14.25 Aligned_cols=50 Identities=10% Similarity=0.043 Sum_probs=23.8
Q ss_pred CCCEEEEE-ECCCCHHHHHHHHHHH---CCC-----CCCCCCCCCCCCCCHHHHHHHHHHH
Q ss_conf 68638987-4155357899988740---100-----0012214332348989999999975
Q gi|254780401|r 221 SGKKVLAF-SGIADTEKFFTTVRQL---GAL-----IEQCYSFGDHAHLSDKKIAYLLDQA 272 (338)
Q Consensus 221 ~~k~v~af-sGIa~P~~F~~~L~~~---g~~-----i~~~~~fpDHh~ys~~dl~~i~~~a 272 (338)
..++++++ .|||= ..|..+++.+ +.. +.....-+++..| .++++.+.+..
T Consensus 115 ~~~~ivliagG~GI-tP~~s~l~~~~~~~~~~~~~~l~~~~r~~~~~~~-~~~l~~l~~~~ 173 (243)
T 2eix_A 115 MVKEMGMIAGGTGI-TPMLQVARAIIKNPKEKTIINLIFANVNEDDILL-RTELDDMAKKY 173 (243)
T ss_dssp SSSEEEEEEEGGGH-HHHHHHHHHHHTCTTCCCEEEEEEEEEEGGGCTT-HHHHHHHHHHC
T ss_pred CCCEEEEEECCCCC-CCHHHHHHHHHHCCCCCCCCEEEECCCCHHHHHH-HHHHHHHHHHC
T ss_conf 78618999557777-7225999999971356764124503589899888-99999999878
No 474
>3eaq_A Heat resistant RNA dependent ATPase; DEAD box RNA helicase, dimer, ATP-binding, helicase, hydrolase, nucleotide-binding; 2.30A {Thermus thermophilus} PDB: 3ear_A 3eas_A
Probab=27.54 E-value=27 Score=14.14 Aligned_cols=21 Identities=14% Similarity=0.118 Sum_probs=16.9
Q ss_pred HHHHHHHHHHHHCCCCEEEEE
Q ss_conf 899999999852473159876
Q gi|254780401|r 61 PTALAIAKAVIDKNLKPGFLS 81 (338)
Q Consensus 61 P~v~~l~~~l~~~g~~~~ils 81 (338)
-.+.++++.|++.|++++.+.
T Consensus 42 ~~~~~l~~~L~~~g~~~~~ih 62 (212)
T 3eaq_A 42 AETEEIAQGLLRLGHPAQALH 62 (212)
T ss_dssp HHHHHHHHHHHHHTCCEEEEC
T ss_pred HHHHHHHHHHHHCCCCEEEEE
T ss_conf 999999999986899789987
No 475
>2obn_A Hypothetical protein; protein of unknown function DUF1611, structural genomics, joint center for structural genomics, JCSG; HET: PG4; 2.30A {Anabaena variabilis atcc 29413}
Probab=27.47 E-value=27 Score=14.14 Aligned_cols=115 Identities=19% Similarity=0.240 Sum_probs=54.3
Q ss_pred EECCCCCCHHHHHHHHHHHHCCCCEEEEEECCCCCCCCCE--------EEECCCCCHHHHCCHHHHHHHCCC--CCCCCC
Q ss_conf 0078887489999999985247315987604578777755--------871456788770421233220576--346520
Q gi|254780401|r 53 VMGGTGKTPTALAIAKAVIDKNLKPGFLSRGYGRKSRISF--------RVDLEKHSAYDVGDEPLLLARRAV--TIVTSD 122 (338)
Q Consensus 53 tvGGtGKTP~v~~l~~~l~~~g~~~~ilsRGYg~~~~~~~--------~v~~~~~~~~~vGDEp~lla~~~p--v~V~~~ 122 (338)
.-+-.|||- .-|.++-. ..=++||-+-+-|+..+.+ .+. +-..+.+.|-+.+.+- -+| -...++
T Consensus 18 ~~~~~gKTa--~gllRy~~--~~ivaVID~~~aG~~~~~~~g~~~~iPi~~-s~~~A~~~~~~~liiG-vAp~GG~lp~~ 91 (349)
T 2obn_A 18 TTGTIGKTG--LALLRYSE--APIVAVIDRNCAGQSLREITGIYRYVPIVK-SVEAALEYKPQVLVIG-IAPKGGGIPDD 91 (349)
T ss_dssp SSSSSCHHH--HHHHHHCC--SCEEEEECGGGTTSCHHHHHCCCSCCCEES-SHHHHGGGCCSEEEEC-CCCCCC-SCGG
T ss_pred CCCCCCHHH--HHHHHHCC--CCEEEEECCCCCCCCHHHCCCCCCCCCEEC-CHHHHHHCCCCEEEEE-ECCCCCCCCHH
T ss_conf 589963688--89986378--977999888668983877159889986247-7999986699889997-24667868999
Q ss_pred HHHHHHHHCCCCCCEE------EECCC-CCCCCCCCEEEEEEECCCCCCCCCCCCCCHHHHH
Q ss_conf 1225664102457479------97183-2234412306999961843356655376136521
Q gi|254780401|r 123 RKIGVQMLLQEGVDII------IMDDG-FHSADLQADFSLIVVNSHRGLGNGLVFPAGPLRV 177 (338)
Q Consensus 123 R~~~~~~~~~~~~dii------IlDDG-fQh~~l~rdl~Ivl~d~~~~~gn~~llPaGpLRE 177 (338)
.+..+..+.+.+.|++ +.||- |+.. -++. .-++|-.+|.. ..-+-.|..|+
T Consensus 92 w~~~i~~Ai~~Gl~IvsGLH~~L~ddpel~~~-a~~g--~~i~DvR~p~~-~l~~~~G~~~~ 149 (349)
T 2obn_A 92 YWIELKTALQAGMSLVNGLHTPLANIPDLNAL-LQPG--QLIWDVRKEPA-NLDVASGAART 149 (349)
T ss_dssp GHHHHHHHHHTTCEEEECSSSCCTTCHHHHHH-CCTT--CCEEETTCCCS-SCCCCCSGGGG
T ss_pred HHHHHHHHHHCCCCEEHHHHHHHCCCHHHHHH-HHCC--CEEEECCCCCC-CCCCCCCCCCC
T ss_conf 99999999980983304367661488989999-7579--98997578998-77622563226
No 476
>2atx_A Small GTP binding protein TC10; GTPase, P-loop, alpha-beta, hydrolase; HET: GNP; 2.65A {Homo sapiens} SCOP: c.37.1.8
Probab=27.40 E-value=23 Score=14.62 Aligned_cols=22 Identities=32% Similarity=0.492 Sum_probs=16.4
Q ss_pred CCCEEEECCEEECCCCCCHHHHHHH
Q ss_conf 8988998230007888748999999
Q gi|254780401|r 43 PIPVICVGGFVMGGTGKTPTALAIA 67 (338)
Q Consensus 43 ~~pVI~VGNitvGGtGKTP~v~~l~ 67 (338)
.+.|+.||+ .|+|||-++..++
T Consensus 18 ~iKiviiG~---~~vGKTsli~r~~ 39 (194)
T 2atx_A 18 MLKCVVVGD---GAVGKTCLLMSYA 39 (194)
T ss_dssp EEEEEEEEC---TTSSHHHHHHHHH
T ss_pred EEEEEEECC---CCCCHHHHHHHHH
T ss_conf 899999999---9979999999996
No 477
>1qfj_A Protein (flavin reductase); riboflavin, ferredoxin reductase superfamily, oxidoreductase; 2.20A {Escherichia coli} SCOP: b.43.4.2 c.25.1.1
Probab=27.32 E-value=27 Score=14.12 Aligned_cols=48 Identities=8% Similarity=-0.126 Sum_probs=21.1
Q ss_pred CCEEEEEE-CCCCHHHHHHHHHHH---CC----CCCCCCCCCCCCCCCHHHHHHHHHH
Q ss_conf 86389874-155357899988740---10----0001221433234898999999997
Q gi|254780401|r 222 GKKVLAFS-GIADTEKFFTTVRQL---GA----LIEQCYSFGDHAHLSDKKIAYLLDQ 271 (338)
Q Consensus 222 ~k~v~afs-GIa~P~~F~~~L~~~---g~----~i~~~~~fpDHh~ys~~dl~~i~~~ 271 (338)
.++++.++ |+|= ..|..+|+++ +. .+.-....+|+..| .++++++..+
T Consensus 102 ~~~~v~iAgG~Gi-tP~~s~l~~~~~~~~~~~v~l~~~~r~~~~~~~-~~el~~l~~~ 157 (232)
T 1qfj_A 102 ERPMILIAGGTGF-SYARSILLTALARNPNRDITIYWGGREEQHLYD-LCELEALSLK 157 (232)
T ss_dssp SSCEEEEEETTCH-HHHHHHHHHHHHHCTTCCEEEEEEESSGGGCTT-HHHHHHHHHH
T ss_pred CCCEEEEECCCCC-CHHHHHHHHHHHCCCCCEEEEEECCCCHHHHHH-HHHHHHHHHH
T ss_conf 6638999469850-439999999997199954999941157788788-9999999986
No 478
>1qvr_A CLPB protein; coiled coil, AAA ATPase, chaperone; HET: ANP; 3.00A {Thermus thermophilus} SCOP: a.174.1.1 c.37.1.20 c.37.1.20
Probab=27.12 E-value=27 Score=14.09 Aligned_cols=24 Identities=25% Similarity=0.484 Sum_probs=16.6
Q ss_pred EEECCEEECCCCCCHHHHHHHHHHHHC
Q ss_conf 998230007888748999999998524
Q gi|254780401|r 47 ICVGGFVMGGTGKTPTALAIAKAVIDK 73 (338)
Q Consensus 47 I~VGNitvGGtGKTP~v~~l~~~l~~~ 73 (338)
|-||-- |.|||-+|.-||+.+.+.
T Consensus 195 vLVGe~---GvGKtaiv~~la~ri~~g 218 (854)
T 1qvr_A 195 VLIGEP---GVGKTAIVEGLAQRIVKG 218 (854)
T ss_dssp EEEECT---TSCHHHHHHHHHHHHHHT
T ss_pred EEECCC---CCHHHHHHHHHHHHHHHC
T ss_conf 587787---630679999999999865
No 479
>2p5t_B PEZT; postsegregational killing system, phosphoryltransferase, helix-turn-helix motif, transcription regulator; 3.20A {Streptococcus pneumoniae}
Probab=27.11 E-value=27 Score=14.09 Aligned_cols=35 Identities=23% Similarity=0.243 Sum_probs=21.6
Q ss_pred CCCCCEEEECCEEECCCCCCHHHHHHHHHHHHCCCCEEEEE
Q ss_conf 38898899823000788874899999999852473159876
Q gi|254780401|r 41 HAPIPVICVGGFVMGGTGKTPTALAIAKAVIDKNLKPGFLS 81 (338)
Q Consensus 41 ~~~~pVI~VGNitvGGtGKTP~v~~l~~~l~~~g~~~~ils 81 (338)
.-|.-|+-+|-- |||||-++..|++.+. .....++
T Consensus 30 ~~P~~ill~GpP---GsGKTtlak~la~~~~---~~~~~i~ 64 (253)
T 2p5t_B 30 KQPIAILLGGQS---GAGKTTIHRIKQKEFQ---GNIVIID 64 (253)
T ss_dssp SSCEEEEEESCG---GGTTHHHHHHHHHHTT---TCCEEEC
T ss_pred CCCEEEEEECCC---CCCHHHHHHHHHHHHC---CCEEEEE
T ss_conf 798799988999---9888999999999848---9739973
No 480
>3lyu_A Putative hydrogenase; the C-terminal has AN alpha-beta fold, structural genomics, PSI-2, protein structure initiative; 2.30A {Pyrococcus furiosus}
Probab=27.10 E-value=27 Score=14.09 Aligned_cols=28 Identities=21% Similarity=0.129 Sum_probs=19.0
Q ss_pred CEEEECCEEECCCCCCHHHHHHHHHHHHCCCCE
Q ss_conf 889982300078887489999999985247315
Q gi|254780401|r 45 PVICVGGFVMGGTGKTPTALAIAKAVIDKNLKP 77 (338)
Q Consensus 45 pVI~VGNitvGGtGKTP~v~~l~~~l~~~g~~~ 77 (338)
+|++| .||||=||+. .+++.+.+.|-..
T Consensus 20 ~vvlI----agG~GiaP~~-si~~~l~~~~~~~ 47 (142)
T 3lyu_A 20 KILAI----GAYTGIVEVY-PIAKAWQEIGNDV 47 (142)
T ss_dssp EEEEE----EETTHHHHHH-HHHHHHHHTTCEE
T ss_pred EEEEE----EECEEHHHHH-HHHHHHHHCCCEE
T ss_conf 69999----9135454789-9999999769969
No 481
>1m3s_A Hypothetical protein YCKF; structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; 1.95A {Bacillus subtilis} SCOP: c.80.1.3 PDB: 1viv_A
Probab=26.90 E-value=27 Score=14.07 Aligned_cols=30 Identities=17% Similarity=0.350 Sum_probs=18.2
Q ss_pred EEEECCEEECCCCCCHHHHHHHHHHHHCCCCEEEE
Q ss_conf 89982300078887489999999985247315987
Q gi|254780401|r 46 VICVGGFVMGGTGKTPTALAIAKAVIDKNLKPGFL 80 (338)
Q Consensus 46 VI~VGNitvGGtGKTP~v~~l~~~l~~~g~~~~il 80 (338)
|.++| +|++| .+..+++..|...|+.+..+
T Consensus 40 I~i~G---~G~S~--~~a~~~~~~l~~lg~~~~~~ 69 (186)
T 1m3s_A 40 IFTAG---AGRSG--LMAKSFAMRLMHMGFNAHIV 69 (186)
T ss_dssp EEEEC---SHHHH--HHHHHHHHHHHHTTCCEEET
T ss_pred EEEEE---CCHHH--HHHHHHHHHHHHCCCCCCCC
T ss_conf 99997---87899--99999999998538766778
No 482
>3iyt_A APAF-1, apoptotic protease-activating factor 1; apoptosome, procaspase-9 CARD, apoptosis; HET: ATP; 9.50A {Homo sapiens}
Probab=26.75 E-value=19 Score=15.23 Aligned_cols=15 Identities=33% Similarity=0.497 Sum_probs=12.0
Q ss_pred ECCCCCCHHHHHHHH
Q ss_conf 078887489999999
Q gi|254780401|r 54 MGGTGKTPTALAIAK 68 (338)
Q Consensus 54 vGGtGKTP~v~~l~~ 68 (338)
+||+|||-++..+++
T Consensus 161 ~~G~GKT~La~~~~~ 175 (1263)
T 3iyt_A 161 MAGCGKSVLAAEAVR 175 (1263)
T ss_dssp CTTSSHHHHHHHHHC
T ss_pred CCCCCHHHHHHHHHH
T ss_conf 986339999999996
No 483
>3lda_A DNA repair protein RAD51; DNA binding protein, ATP-binding, DNA damage, DNA recombinat repair, nucleotide-binding; HET: DNA; 2.50A {Saccharomyces cerevisiae} PDB: 1szp_A*
Probab=26.66 E-value=27 Score=14.04 Aligned_cols=18 Identities=22% Similarity=0.071 Sum_probs=12.9
Q ss_pred CCCCCCHHHHHHHHHHHH
Q ss_conf 788874899999999852
Q gi|254780401|r 55 GGTGKTPTALAIAKAVID 72 (338)
Q Consensus 55 GGtGKTP~v~~l~~~l~~ 72 (338)
-|||||.++.-++-..+.
T Consensus 187 pGsGKTqLalqlav~~ql 204 (400)
T 3lda_A 187 FRTGKSQLCHTLAVTCQI 204 (400)
T ss_dssp TTSSHHHHHHHHHHHTTS
T ss_pred CCCCHHHHHHHHHHHHHH
T ss_conf 989999999999999854
No 484
>1yio_A Response regulatory protein; transcription regulation, DNA binding protein; 2.20A {Pseudomonas fluorescens} SCOP: a.4.6.2 c.23.1.1 PDB: 1zn2_A
Probab=26.49 E-value=28 Score=14.02 Aligned_cols=46 Identities=9% Similarity=0.139 Sum_probs=26.4
Q ss_pred CCCCCCCHHHHHHHHCCCCCCEEEECC------CCC----CCCCCCEEEEEEECCC
Q ss_conf 634652012256641024574799718------322----3441230699996184
Q gi|254780401|r 116 VTIVTSDRKIGVQMLLQEGVDIIIMDD------GFH----SADLQADFSLIVVNSH 161 (338)
Q Consensus 116 pv~V~~~R~~~~~~~~~~~~diiIlDD------GfQ----h~~l~rdl~Ivl~d~~ 161 (338)
.|.++.+-.++...+.+..+|+||+|- |+. -++...+.-|+++.+.
T Consensus 30 ~V~~a~~~~eal~~~~~~~pDlvllD~~mp~~~G~~~l~~i~~~~~~~~iI~lt~~ 85 (208)
T 1yio_A 30 EVETFDCASTFLEHRRPEQHGCLVLDMRMPGMSGIELQEQLTAISDGIPIVFITAH 85 (208)
T ss_dssp EEEEESSHHHHHHHCCTTSCEEEEEESCCSSSCHHHHHHHHHHTTCCCCEEEEESC
T ss_pred EEEEECCHHHHHHHHHCCCCCEEEEECCCCCCCCHHHHHHHHHHCCCCEEEEEECC
T ss_conf 89997999999998604699989985788997657999998860566517987257
No 485
>2rdm_A Response regulator receiver protein; structural genomics, unknown function, PSI-2, protein structure initiative; HET: MSE; 1.76A {Sinorhizobium medicae WSM419}
Probab=26.32 E-value=28 Score=14.00 Aligned_cols=30 Identities=20% Similarity=0.284 Sum_probs=16.9
Q ss_pred CCCCCCCCHHHHHHHHCCC-CCCEEEECCCC
Q ss_conf 7634652012256641024-57479971832
Q gi|254780401|r 115 AVTIVTSDRKIGVQMLLQE-GVDIIIMDDGF 144 (338)
Q Consensus 115 ~pv~V~~~R~~~~~~~~~~-~~diiIlDDGf 144 (338)
+.|..+.+-.+|.+.+.+. .+|+||+|+.+
T Consensus 30 ~~v~~a~s~~eAl~~l~~~~~~dlvi~D~~~ 60 (132)
T 2rdm_A 30 FLVTAVSSGAKAIEMLKSGAAIDGVVTDIRF 60 (132)
T ss_dssp CEEEEESSHHHHHHHHHTTCCCCEEEEESCC
T ss_pred CEEEEECCHHHHHHHHHHCCCCCEEEEEECC
T ss_conf 9999989999999999838998799873005
No 486
>3gt7_A Sensor protein; structural genomics, signal receiver domain, kinase, PSI-2, protein structure initiative; 2.30A {Syntrophus aciditrophicus SB}
Probab=26.27 E-value=25 Score=14.31 Aligned_cols=25 Identities=28% Similarity=0.295 Sum_probs=11.3
Q ss_pred CCCCCCHHHHHHHHCCCCCCEEEEC
Q ss_conf 3465201225664102457479971
Q gi|254780401|r 117 TIVTSDRKIGVQMLLQEGVDIIIMD 141 (338)
Q Consensus 117 v~V~~~R~~~~~~~~~~~~diiIlD 141 (338)
|..+.+-.+|...+.+..+|+||+|
T Consensus 34 v~~a~~~~~al~~l~~~~~DlillD 58 (154)
T 3gt7_A 34 TEHVRNGREAVRFLSLTRPDLIISD 58 (154)
T ss_dssp EEEESSHHHHHHHHTTCCCSEEEEE
T ss_pred EEEECCHHHHHHHHHHCCCCEEEEE
T ss_conf 9998999999999983899999980
No 487
>2hdw_A Hypothetical protein PA2218; alpha/beta hydrolase fold, structural genomics, PSI, protein structure initiative; 2.00A {Pseudomonas aeruginosa}
Probab=26.24 E-value=28 Score=13.99 Aligned_cols=36 Identities=8% Similarity=-0.021 Sum_probs=26.6
Q ss_pred CCCC-CCHHHHHHHHHHHHCCCCEEEE-EECCCCCCCC
Q ss_conf 7888-7489999999985247315987-6045787777
Q gi|254780401|r 55 GGTG-KTPTALAIAKAVIDKNLKPGFL-SRGYGRKSRI 90 (338)
Q Consensus 55 GGtG-KTP~v~~l~~~l~~~g~~~~il-sRGYg~~~~~ 90 (338)
|++| |.....+.++.|.++||.|... -||+|+....
T Consensus 104 G~~g~~~~~~~~~a~~La~~Gy~V~~~D~rG~G~S~g~ 141 (367)
T 2hdw_A 104 PFGAVKEQSSGLYAQTMAERGFVTLAFDPSYTGESGGQ 141 (367)
T ss_dssp CTTCCTTSHHHHHHHHHHHTTCEEEEECCTTSTTSCCS
T ss_pred CCCCCCCCCHHHHHHHHHHCCCEEEEECCCCCCCCCCC
T ss_conf 98886423089999999987997999648999887997
No 488
>2ggs_A 273AA long hypothetical DTDP-4-dehydrorhamnose reductase; alpha, beta, oxidoreductase; HET: NDP; 1.70A {Sulfolobus tokodaii}
Probab=25.95 E-value=28 Score=13.95 Aligned_cols=27 Identities=7% Similarity=0.315 Sum_probs=18.8
Q ss_pred EEECCCCCCHHHHHHHHHHHHCCCCEEEE
Q ss_conf 00078887489999999985247315987
Q gi|254780401|r 52 FVMGGTGKTPTALAIAKAVIDKNLKPGFL 80 (338)
Q Consensus 52 itvGGtGKTP~v~~l~~~l~~~g~~~~il 80 (338)
|.+|||| -+-.+|+++|++.|..+++.
T Consensus 4 LItG~tG--~iG~~l~~~L~~~~~~v~~~ 30 (273)
T 2ggs_A 4 LITGASG--QLGIELSRLLSERHEVIKVY 30 (273)
T ss_dssp EEETTTS--HHHHHHHHHHTTTSCEEEEE
T ss_pred EEECCCC--HHHHHHHHHHHCCCCEEEEE
T ss_conf 9999998--79999999997399899997
No 489
>3cg0_A Response regulator receiver modulated diguanylate cyclase with PAS/PAC sensor; signal receiver domain; 2.15A {Desulfovibrio desulfuricans subsp}
Probab=25.93 E-value=28 Score=13.96 Aligned_cols=26 Identities=19% Similarity=0.123 Sum_probs=16.1
Q ss_pred CCCCHHHHHHHHCCCCCCEEEECCCC
Q ss_conf 65201225664102457479971832
Q gi|254780401|r 119 VTSDRKIGVQMLLQEGVDIIIMDDGF 144 (338)
Q Consensus 119 V~~~R~~~~~~~~~~~~diiIlDDGf 144 (338)
++.+-.+|...+.+..+|+||+|+.+
T Consensus 39 ~a~~~~eal~~~~~~~~dlvi~D~~m 64 (140)
T 3cg0_A 39 VFDNGEEAVRCAPDLRPDIALVDIML 64 (140)
T ss_dssp EESSHHHHHHHHHHHCCSEEEEESSC
T ss_pred EECCHHHHHHHHHHCCCCEEEEECCC
T ss_conf 97899999999982799889997678
No 490
>3o38_A Short chain dehydrogenase; tuberculosis, ortholog from A non-pathogenic dehydrogenase, structural genomics; 1.95A {Mycobacterium smegmatis}
Probab=25.92 E-value=28 Score=13.95 Aligned_cols=30 Identities=10% Similarity=0.070 Sum_probs=21.9
Q ss_pred EEECCCCCCHHHHHHHHHHHHCCCCEEEEEE
Q ss_conf 0007888748999999998524731598760
Q gi|254780401|r 52 FVMGGTGKTPTALAIAKAVIDKNLKPGFLSR 82 (338)
Q Consensus 52 itvGGtGKTP~v~~l~~~l~~~g~~~~ilsR 82 (338)
|.+||+|+ =+=..+|+.|.+.|.+|++.+|
T Consensus 26 lITGasg~-GIG~aia~~la~~Ga~V~i~~r 55 (266)
T 3o38_A 26 LVTAAAGT-GIGSTTARRALLEGADVVISDY 55 (266)
T ss_dssp EESSCSSS-SHHHHHHHHHHHTTCEEEEEES
T ss_pred EEECCCCC-HHHHHHHHHHHHCCCEEEEEEC
T ss_conf 99499974-8999999999987998999979
No 491
>2ux8_A Glucose-1-phosphate uridylyltransferase; UGPG, GALU pyrophosphorylase, nucleotidyltransferase; HET: G1P; 2.65A {Sphingomonas elodea}
Probab=25.75 E-value=28 Score=13.93 Aligned_cols=39 Identities=13% Similarity=0.220 Sum_probs=32.4
Q ss_pred CCCCCEEEECCEEECCCCCCHHHHHHHHHHHHCCCCEEEEEECCCCC
Q ss_conf 38898899823000788874899999999852473159876045787
Q gi|254780401|r 41 HAPIPVICVGGFVMGGTGKTPTALAIAKAVIDKNLKPGFLSRGYGRK 87 (338)
Q Consensus 41 ~~~~pVI~VGNitvGGtGKTP~v~~l~~~l~~~g~~~~ilsRGYg~~ 87 (338)
..|-|.|-||+- |+..++.+.|.+.|.+-.++..||+..
T Consensus 34 ~~PK~Llpi~gk--------plI~~~l~~l~~~Gi~~iiiv~~~~~~ 72 (297)
T 2ux8_A 34 AMPKEMLPVVDR--------PLIQYAVDEAVEAGIEQMIFVTGRGKS 72 (297)
T ss_dssp SSCGGGCEETTE--------EHHHHHHHHHHHTTCCEEEEEECTTCH
T ss_pred CCCCCCCEECCE--------EHHHHHHHHHHHCCCCEEEEECCCCCH
T ss_conf 998323479999--------899999999998699889999123503
No 492
>2orw_A Thymidine kinase; TMTK, TP4A, transferase; HET: 4TA; 1.50A {Thermotoga maritima} PDB: 2qpo_A 2qq0_A* 2qqe_A*
Probab=25.75 E-value=28 Score=13.92 Aligned_cols=26 Identities=19% Similarity=0.126 Sum_probs=23.4
Q ss_pred CCCCCHHHHHHHHHHHHCCCCEEEEE
Q ss_conf 88874899999999852473159876
Q gi|254780401|r 56 GTGKTPTALAIAKAVIDKNLKPGFLS 81 (338)
Q Consensus 56 GtGKTP~v~~l~~~l~~~g~~~~ils 81 (338)
.+|||--.+-.+..++..|.++.++.
T Consensus 13 fSGKTt~Li~~~~~~~~~g~kvl~i~ 38 (184)
T 2orw_A 13 YSGKTTELLSFVEIYKLGKKKVAVFK 38 (184)
T ss_dssp TSSHHHHHHHHHHHHHHTTCEEEEEE
T ss_pred CCHHHHHHHHHHHHHHHCCCEEEEEE
T ss_conf 77889999999999998799599997
No 493
>1n0w_A DNA repair protein RAD51 homolog 1; DNA repair, homologous recombination, breast cancer susceptibility, RECA-like ATPase, protein complex; HET: DNA MSE; 1.70A {Homo sapiens} SCOP: c.37.1.11
Probab=25.72 E-value=26 Score=14.21 Aligned_cols=28 Identities=21% Similarity=0.061 Sum_probs=0.0
Q ss_pred CCEEE----CCCCCCHHHHHHHHHHHHCCCCE
Q ss_conf 23000----78887489999999985247315
Q gi|254780401|r 50 GGFVM----GGTGKTPTALAIAKAVIDKNLKP 77 (338)
Q Consensus 50 GNitv----GGtGKTP~v~~l~~~l~~~g~~~ 77 (338)
|+++. -|+|||-++.-++......+...
T Consensus 24 G~~~~i~G~~GsGKT~l~lq~~~~~~~~~~~~ 55 (243)
T 1n0w_A 24 GSITEMFGEFRTGKTQICHTLAVTCQLPIDRG 55 (243)
T ss_dssp TSEEEEECCTTSSHHHHHHHHHHHTTSCGGGT
T ss_pred CEEEEEEECCCCCHHHHHHHHHHHHHHHHHCC
T ss_conf 97999991899998999999999999864125
No 494
>3lua_A Response regulator receiver protein; two-component signal transduction system, histidine kinase, phosphorelay, receiver domain, nysgxrc; 2.40A {Clostridium thermocellum}
Probab=25.67 E-value=29 Score=13.92 Aligned_cols=55 Identities=11% Similarity=-0.120 Sum_probs=0.0
Q ss_pred CCCCCEEEECCCCCHHHHCCHHHHHHHCCCCCCCCCHHHHHHHHCCC-CCCEEEEC
Q ss_conf 77775587145678877042123322057634652012256641024-57479971
Q gi|254780401|r 87 KSRISFRVDLEKHSAYDVGDEPLLLARRAVTIVTSDRKIGVQMLLQE-GVDIIIMD 141 (338)
Q Consensus 87 ~~~~~~~v~~~~~~~~~vGDEp~lla~~~pv~V~~~R~~~~~~~~~~-~~diiIlD 141 (338)
+.++.+.++.++....+.=-.-+.-.-...|..+.+-.+|...+.+. .+|+||+|
T Consensus 2 ~~~~~ILiVDD~~~~r~~l~~~L~~~G~~~v~~a~~g~eal~~l~~~~~~dlii~D 57 (140)
T 3lua_A 2 SLDGTVLLIDYFEYEREKTKIIFDNIGEYDFIEVENLKKFYSIFKDLDSITLIIMD 57 (140)
T ss_dssp -CCCEEEEECSCHHHHHHHHHHHHHHCCCEEEEECSHHHHHTTTTTCCCCSEEEEC
T ss_pred CCCCEEEEEECCHHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHCCCCCCEEEEE
T ss_conf 99997999949999999999999867990899989999999999738998599986
No 495
>1r6d_A TDP-glucose-4,6-dehydratase; rossmann fold, short-chain dehydrogenase/reductase, lyase; HET: NAD DAU; 1.35A {Streptomyces venezuelae} SCOP: c.2.1.2 PDB: 1r66_A*
Probab=25.62 E-value=26 Score=14.17 Aligned_cols=29 Identities=14% Similarity=0.188 Sum_probs=0.0
Q ss_pred EEECCCCCCHHHHHHHHHHHHCCCCEEEEEE
Q ss_conf 0007888748999999998524731598760
Q gi|254780401|r 52 FVMGGTGKTPTALAIAKAVIDKNLKPGFLSR 82 (338)
Q Consensus 52 itvGGtGKTP~v~~l~~~l~~~g~~~~ilsR 82 (338)
|.+|||| -+=.+|++.|.++|+.+..++|
T Consensus 4 LITG~tG--fIG~~l~~~Ll~~g~~v~~~~~ 32 (337)
T 1r6d_A 4 LVTGGAG--FIGSHFVRQLLAGAYPDVPADE 32 (337)
T ss_dssp EEETTTS--HHHHHHHHHHHHTSCTTSCCSE
T ss_pred EEECCCC--HHHHHHHHHHHHCCCCCCCCCE
T ss_conf 9988887--8999999999977997667765
No 496
>3k9c_A Transcriptional regulator, LACI family protein; PSI-II, 11026W, structural genomics, protein structure initiative; 2.14A {Rhodococcus jostii RHA1}
Probab=25.61 E-value=29 Score=13.91 Aligned_cols=115 Identities=10% Similarity=-0.019 Sum_probs=0.0
Q ss_pred CCCEEEECCEEECCCCCCHHH--------HHHHHHHHHCCCC-EEEEEECCCCCCCCCEEEECCCCCHHHHCCHHHHHHH
Q ss_conf 898899823000788874899--------9999998524731-5987604578777755871456788770421233220
Q gi|254780401|r 43 PIPVICVGGFVMGGTGKTPTA--------LAIAKAVIDKNLK-PGFLSRGYGRKSRISFRVDLEKHSAYDVGDEPLLLAR 113 (338)
Q Consensus 43 ~~pVI~VGNitvGGtGKTP~v--------~~l~~~l~~~g~~-~~ilsRGYg~~~~~~~~v~~~~~~~~~vGDEp~lla~ 113 (338)
.+|||++|+-. .....|.| ..++++|.++|++ ++++ |+.......-+...-.....+.|-.......
T Consensus 88 ~iPvV~~~~~~--~~~~~~~V~~D~~~a~~~a~~~l~~~G~~~i~~i--~~~~~~~~~~r~~gf~~~~~~~~~~~~~~~~ 163 (289)
T 3k9c_A 88 RVPALVVARAS--GLPGVGAVRGDDVAGITLAVDHLTELGHRNIAHI--DGADAPGGADRRAGFLAAMDRHGLSASATVV 163 (289)
T ss_dssp TSCEEEESSCC--SSTTSEEEEECHHHHHHHHHHHHHHTTCCSEEEE--CCTTSTTHHHHHHHHHHHHHHTTCGGGEEEE
T ss_pred CCCEEEEECCC--CCCCCCEEECCHHHHHHHHHHHHHHHCCCCEEEC--CCCCCCHHHHHHHHHHHHHHHCCCCCCCCEE
T ss_conf 79989996057--8998887854769999999999987188741442--5876631577888777899981999772211
Q ss_pred CCCCCCCCCHHHHHHHHCCC-CCCEEEECCCC-----------CCCCCCCEEEEEEECCC
Q ss_conf 57634652012256641024-57479971832-----------23441230699996184
Q gi|254780401|r 114 RAVTIVTSDRKIGVQMLLQE-GVDIIIMDDGF-----------HSADLQADFSLIVVNSH 161 (338)
Q Consensus 114 ~~pv~V~~~R~~~~~~~~~~-~~diiIlDDGf-----------Qh~~l~rdl~Ivl~d~~ 161 (338)
...-.-...+....+.+.+. .++.|+.-+.. ++.++..|+.|+.+|..
T Consensus 164 ~~~~~~~~~~~~~~~~l~~~~~~~ai~~~~d~~A~g~~~~l~~~g~~ip~dv~vi~~d~~ 223 (289)
T 3k9c_A 164 TGGTTETEGAEGMHTLLEMPTPPTAVVAFNDRCATGVLDLLVRSGRDVPADISVVGYDDS 223 (289)
T ss_dssp CCCSSHHHHHHHHHHHHTSSSCCSEEEESSHHHHHHHHHHHHHTTCCTTTTCEEEEEECC
T ss_pred CCCCCHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCH
T ss_conf 155656779999999997345866012145899999999999859999975442024877
No 497
>2dhr_A FTSH; AAA+ protein, hexameric Zn metalloprotease, hydrolase; HET: ADP; 3.90A {Thermus thermophilus}
Probab=25.56 E-value=29 Score=13.90 Aligned_cols=25 Identities=32% Similarity=0.202 Sum_probs=0.0
Q ss_pred CCCCCHHHHHHHHHHHHCCCCEEEEEEC
Q ss_conf 8887489999999985247315987604
Q gi|254780401|r 56 GTGKTPTALAIAKAVIDKNLKPGFLSRG 83 (338)
Q Consensus 56 GtGKTP~v~~l~~~l~~~g~~~~ilsRG 83 (338)
|||||=++.++|..+ |.....+|.+
T Consensus 74 GtGKT~~a~a~a~e~---~~~~~~~~~~ 98 (499)
T 2dhr_A 74 GVGKTHLARAVAGEA---RVPFITASGS 98 (499)
T ss_dssp SSSHHHHHHHHHHHT---TCCEEEEEGG
T ss_pred CCCHHHHHHHHHHHH---CCCEEEEEHH
T ss_conf 975899999998631---8945996679
No 498
>3cc1_A BH1870 protein, putative alpha-N-acetylgalactosaminidase; structural genomic center for structural genomics, JCSG; HET: MSE PGE PG4 P33; 2.00A {Bacillus halodurans c-125}
Probab=25.51 E-value=29 Score=13.90 Aligned_cols=22 Identities=18% Similarity=0.255 Sum_probs=0.0
Q ss_pred HHHHCCCCCCEEEECCCCCCCC
Q ss_conf 6641024574799718322344
Q gi|254780401|r 127 VQMLLQEGVDIIIMDDGFHSAD 148 (338)
Q Consensus 127 ~~~~~~~~~diiIlDDGfQh~~ 148 (338)
++.+.+.+.+.+++|||-|..+
T Consensus 39 ~~~~~~~G~~~~~iDDGW~~~~ 60 (433)
T 3cc1_A 39 ANHLKKYGWEYIVVDIQWYEPT 60 (433)
T ss_dssp HHHTGGGTCCEEEECSCTTCCC
T ss_pred HHCCCCCCCEEEEECCCCCCCC
T ss_conf 8527014978999888856777
No 499
>2h7i_A Enoyl-[acyl-carrier-protein] reductase [NADH]; oxidoreductase, INHA, enoyl acyl carrier reductase, pyrrolidine carboxamide; HET: NAD 566; 1.62A {Mycobacterium tuberculosis H37RV} SCOP: c.2.1.2 PDB: 1p44_A* 1p45_A* 2b35_A* 2b36_A* 2b37_A* 2aq8_A* 2h7l_A* 2h7m_A* 2h7n_A* 2h7p_A* 2nsd_A* 2pr2_A* 2x22_A* 2x23_A* 3fne_A* 3fnf_A* 3fng_A* 3fnh_A* 2aqh_A* 2aqk_A* ...
Probab=25.48 E-value=29 Score=13.89 Aligned_cols=31 Identities=16% Similarity=0.157 Sum_probs=0.0
Q ss_pred EEECCCCCCHHHHHHHHHHHHCCCCEEEEEE
Q ss_conf 0007888748999999998524731598760
Q gi|254780401|r 52 FVMGGTGKTPTALAIAKAVIDKNLKPGFLSR 82 (338)
Q Consensus 52 itvGGtGKTP~v~~l~~~l~~~g~~~~ilsR 82 (338)
|.+|++|-.=+-..+|+.|.++|.+|++..|
T Consensus 11 lItGaag~~GIG~aiA~~la~~Ga~Vvi~~~ 41 (269)
T 2h7i_A 11 LVSGIITDSSIAFHIARVAQEQGAQLVLTGF 41 (269)
T ss_dssp EECCCSSTTSHHHHHHHHHHHTTCEEEEEEC
T ss_pred EEECCCCCCHHHHHHHHHHHHCCCEEEEEEC
T ss_conf 9989999977999999999986999999968
No 500
>1tzf_A Glucose-1-phosphate cytidylyltransferase; nucleotidyltransferase, mixed alpha/beta fold; HET: C5G; 2.10A {Salmonella enterica subsp} SCOP: c.68.1.13 PDB: 1wvc_A*
Probab=25.46 E-value=29 Score=13.89 Aligned_cols=39 Identities=26% Similarity=0.415 Sum_probs=0.0
Q ss_pred CCCCCCCEEEECCEEECCCCCCHHHHHHHHHHHHCCCCEEEEEECCC
Q ss_conf 43388988998230007888748999999998524731598760457
Q gi|254780401|r 39 RLHAPIPVICVGGFVMGGTGKTPTALAIAKAVIDKNLKPGFLSRGYG 85 (338)
Q Consensus 39 ~~~~~~pVI~VGNitvGGtGKTP~v~~l~~~l~~~g~~~~ilsRGYg 85 (338)
+...|-|.+-|++- |+..+..+.|++.|.+-.++-.||.
T Consensus 20 T~~~PK~Ll~I~gk--------plI~~~i~~l~~~gi~~iiiv~gy~ 58 (259)
T 1tzf_A 20 TIVKPKPMVEIGGK--------PILWHIMKMYSVHGIKDFIICCGYK 58 (259)
T ss_dssp --CCCGGGCEETTE--------EHHHHHHHHHHHTTCCEEEEEECTT
T ss_pred HCCCCCCEEEECCE--------EHHHHHHHHHHHCCCCEEEEECCCC
T ss_conf 47998005799999--------9899999999985996799832222
Done!