HHSEARCH alignment of GI: 254780401 and SCOP domain: d1okkd2

Alignment
>d1okkd2 c.37.1.10 (D:97-303) GTPase domain of the signal recognition particle receptor FtsY {Thermus aquaticus [TaxId: 271]}
Probab=95.32  E-value=0.008  Score=37.46  Aligned_cols=80  Identities=20%  Similarity=0.254  Sum_probs=48.9

Q ss_pred             EEEECCEEECCCCCCHHHHHHHHHHHHCCCCEEEEEECCCCCCCCCEEEECCCCCHHHHCCHHHH-HHH--CCCCCCCCC
Q ss_conf             89982300078887489999999985247315987604578777755871456788770421233-220--576346520
Q gi|254780401|r   46 VICVGGFVMGGTGKTPTALAIAKAVIDKNLKPGFLSRGYGRKSRISFRVDLEKHSAYDVGDEPLL-LAR--RAVTIVTSD  122 (338)
Q Consensus        46 VI~VGNitvGGtGKTP~v~~l~~~l~~~g~~~~ilsRGYg~~~~~~~~v~~~~~~~~~vGDEp~l-la~--~~pv~V~~~  122 (338)
                      +..||-   =|+|||-++.-||.+++++|.+|++++=-                +.+-.+=|.+- +++  .+|+++..+
T Consensus         9 i~lvGp---tGvGKTTTiaKLA~~~~~~g~kV~lit~D----------------t~R~gA~eQL~~~a~~l~i~~~~~~~   69 (207)
T d1okkd2           9 VLVVGV---NGVGKTTTIAKLGRYYQNLGKKVMFCAGD----------------TFRAAGGTQLSEWGKRLSIPVIQGPE   69 (207)
T ss_dssp             EEEECS---TTSSHHHHHHHHHHHHHTTTCCEEEECCC----------------CSSTTHHHHHHHHHHHHTCCEECCCT
T ss_pred             EEEECC---CCCCHHHHHHHHHHHHHHCCCCEEEEEEC----------------CCCCCCHHHHHHCCCCCCCEEEECCC
T ss_conf             999899---99988999999999999779907999813----------------66654026676405456823896167


Q ss_pred             HHHHHHH-------HCCCCCCEEEECCCC
Q ss_conf             1225664-------102457479971832
Q gi|254780401|r  123 RKIGVQM-------LLQEGVDIIIMDDGF  144 (338)
Q Consensus       123 R~~~~~~-------~~~~~~diiIlDDGf  144 (338)
                      .......       ....+.|+|+.|=.=
T Consensus        70 ~~d~~~~~~~~~~~~~~~~~d~ilIDTaG   98 (207)
T d1okkd2          70 GTDPAALAYDAVQAMKARGYDLLFVDTAG   98 (207)
T ss_dssp             TCCHHHHHHHHHHHHHHHTCSEEEECCCC
T ss_pred             CCCHHHHHHHHHHHHHHCCCCEEECCCCC
T ss_conf             74278899998999998799999717522


SCOP domain information

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: GTPase domain of the signal recognition particle receptor FtsY
species: Thermus aquaticus [TaxId: 271]