HHSEARCH alignment of GI: 254780401 and SCOP domain: d2eyqa3

Alignment
>d2eyqa3 c.37.1.19 (A:546-778) Transcription-repair coupling factor, TRCF {Escherichia coli [TaxId: 562]}
Probab=92.55  E-value=0.041  Score=32.40  Aligned_cols=101  Identities=17%  Similarity=0.107  Sum_probs=58.2

Q ss_pred             ECCCCCCHHHHHHHHHHHHCCCCEEEEEECCCCCCCCCEEEECCCCCHHHHCCHHHHHHHCCCCC-------CC-CCHHH
Q ss_conf             07888748999999998524731598760457877775587145678877042123322057634-------65-20122
Q gi|254780401|r   54 MGGTGKTPTALAIAKAVIDKNLKPGFLSRGYGRKSRISFRVDLEKHSAYDVGDEPLLLARRAVTI-------VT-SDRKI  125 (338)
Q Consensus        54 vGGtGKTP~v~~l~~~l~~~g~~~~ilsRGYg~~~~~~~~v~~~~~~~~~vGDEp~lla~~~pv~-------V~-~~R~~  125 (338)
                      +=|+|||=+.+..+....+.|++++++.         |...-...+ ..    +---+....|+-       ++ +.|.+
T Consensus        84 dvGsGKT~V~~~a~~~~~~~g~qv~~l~---------Pt~~La~Q~-~~----~~~~~~~~~~~~v~~l~~~~~~~~~~~  149 (233)
T d2eyqa3          84 DVGFGKTEVAMRAAFLAVDNHKQVAVLV---------PTTLLAQQH-YD----NFRDRFANWPVRIEMISRFRSAKEQTQ  149 (233)
T ss_dssp             CCCTTTHHHHHHHHHHHHTTTCEEEEEC---------SSHHHHHHH-HH----HHHHHSTTTTCCEEEESTTSCHHHHHH
T ss_pred             CCCCCCHHHHHHHHHHHHHCCCCEEEEC---------CHHHHHHHH-HH----HHHHHHHHCCCEEEECCCCCCCHHHHH
T ss_conf             8887728999999999997689569974---------688767999-99----999987247977976357653126999


Q ss_pred             HHHHHCCCCCCEEEECC-CCCCCCCCCEEEEEEECCCCCCCCCC
Q ss_conf             56641024574799718-32234412306999961843356655
Q gi|254780401|r  126 GVQMLLQEGVDIIIMDD-GFHSADLQADFSLIVVNSHRGLGNGL  168 (338)
Q Consensus       126 ~~~~~~~~~~diiIlDD-GfQh~~l~rdl~Ivl~d~~~~~gn~~  168 (338)
                      ....+.+..+++||=-- .+|..--.+++-++++|-+..||-.+
T Consensus       150 ~~~~~~~g~~~iviGths~l~~~~~f~~LgLiIiDEeH~fg~kQ  193 (233)
T d2eyqa3         150 ILAEVAEGKIDILIGTHKLLQSDVKFKDLGLLIVDEEHRFGVRH  193 (233)
T ss_dssp             HHHHHHTTCCSEEEECTHHHHSCCCCSSEEEEEEESGGGSCHHH
T ss_pred             HHHHHHCCCCCEEEEEHHHHCCCCCCCCCCCEEEECHHHHHHHH
T ss_conf             99999679978897420233067765554630222312332578


SCOP domain information

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Tandem AAA-ATPase domain
domain: Transcription-repair coupling factor, TRCF
species: Escherichia coli [TaxId: 562]